Query 018971
Match_columns 348
No_of_seqs 132 out of 942
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 1.3E-35 4.4E-40 268.2 7.8 140 187-341 45-184 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 1.4E-32 4.8E-37 252.3 10.8 121 199-338 18-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 3E-31 1E-35 239.3 14.3 139 199-346 29-167 (185)
4 3phu_A RNA-directed RNA polyme 100.0 1.5E-30 5.3E-35 240.6 16.2 139 199-346 29-167 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 9.8E-22 3.4E-26 182.7 13.9 99 238-340 131-232 (234)
6 4dhi_B Ubiquitin thioesterase 99.8 1.6E-18 5.5E-23 165.7 14.7 103 237-340 168-275 (284)
7 4ddg_A Ubiquitin-conjugating e 99.8 2.4E-18 8E-23 170.4 14.2 97 238-337 299-398 (399)
8 2zfy_A Ubiquitin thioesterase 99.8 2.5E-18 8.7E-23 159.5 12.4 114 209-337 117-233 (234)
9 3dkb_A Tumor necrosis factor, 98.7 1.1E-07 3.6E-12 93.8 11.1 140 201-344 112-288 (390)
10 3zrh_A Ubiquitin thioesterase 98.3 3.6E-06 1.2E-10 84.3 10.8 137 201-342 189-352 (454)
11 2zfy_A Ubiquitin thioesterase 96.2 0.014 4.7E-07 53.9 8.2 21 202-222 44-64 (234)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=1.3e-35 Score=268.19 Aligned_cols=140 Identities=24% Similarity=0.419 Sum_probs=102.6
Q ss_pred ccccccccccccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHH
Q 018971 187 SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFD 266 (348)
Q Consensus 187 ~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd 266 (348)
....|...+....||.+++||+|||||||||++||+.+ ++.|.+||+.+++||++|+++|++|++++|+
T Consensus 45 ~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~-----------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e 113 (185)
T 3pfy_A 45 QEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGD-----------QDMHEVVRKHCMDYLMKNADYFSNYVTEDFT 113 (185)
T ss_dssp HHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSC-----------GGGHHHHHHHHHHHHHHTHHHHTTCC-----
T ss_pred HHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34457777777789999999999999999999999942 3568999999999999999999999999999
Q ss_pred HHHHHhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 018971 267 LYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 341 (348)
Q Consensus 267 ~Y~~~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~ 341 (348)
+||++|+++++|||++||+|||++|+++|.||+.+.. ++.+. .|.+....+||+|+||+.+|||||++|.+
T Consensus 114 ~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~---~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~ 184 (185)
T 3pfy_A 114 TYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTE---PINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184 (185)
T ss_dssp ------------CCHHHHHHHHHHHTSCEEEESSCSS---CSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred HHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCC---CeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence 9999999999999999999999999999999997522 33332 25444457899999998889999998864
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.97 E-value=1.4e-32 Score=252.29 Aligned_cols=121 Identities=28% Similarity=0.437 Sum_probs=106.8
Q ss_pred CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhhCCCC
Q 018971 199 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHV 277 (348)
Q Consensus 199 ~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~f-e~fie~dfd~Y~~~M~k~gt 277 (348)
.+|.+++||+||||||||||+|| .. ++.|.+||+.+++||++|+++| +.|++++|++||++|+++++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~-----------~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~ 85 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FK-----------QDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMES 85 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HS-----------SCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTS
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CC-----------chHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCE
Confidence 46899999999999999999999 42 1347899999999999999999 47788999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 018971 278 WGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 338 (348)
Q Consensus 278 WGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~ 338 (348)
|||++||+|||++|+++|.||+.+ ++ .+..||++. ..++|+|+|++ +|||||+.
T Consensus 86 WGg~iEL~Als~~~~~~I~V~~~~---~~--~~~~~~~~~-~~~~I~L~Y~g-~HYdsl~~ 139 (212)
T 3by4_A 86 WGGAIEIGIISDALAVAIYVVDID---AV--KIEKFNEDK-FDNYILILFNG-IHYDSLTM 139 (212)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEETT---TT--EEEEESTTT-CSEEEEEEECS-SCEEEEEE
T ss_pred EccHHHHHHHHHHHCCCEEEEECC---CC--CeEEeCCCC-CCCeEEEEEcC-CcceEEec
Confidence 999999999999999999999974 22 356788775 56899999996 59999987
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=3e-31 Score=239.28 Aligned_cols=139 Identities=17% Similarity=0.296 Sum_probs=113.0
Q ss_pred CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhhCCCCc
Q 018971 199 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW 278 (348)
Q Consensus 199 ~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd~Y~~~M~k~gtW 278 (348)
.+|.+.+||||||||||||++||+.+ .+.+. .+..|.+||+.+++||++|+++ .+++++|++||++|+++++|
T Consensus 29 ~~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~W 101 (185)
T 3phx_A 29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW 101 (185)
T ss_dssp HHEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCC
T ss_pred cCeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCcc
Confidence 45889999999999999999999842 12111 1355999999999999999988 45789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCC
Q 018971 279 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 346 (348)
Q Consensus 279 GG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~~~~~~ 346 (348)
||++||+|+|++|+++|+||+.+.+. .++.+..||++. ..++|+|+|++.+|||+|+....+.+..
T Consensus 102 Gg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~-~~~~I~L~Y~g~~HYdsl~~~~~~~~~~ 167 (185)
T 3phx_A 102 GSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETDT 167 (185)
T ss_dssp CBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCC-TTTSEEEEEETTTEEEEEEECGGGC---
T ss_pred CcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCC-CCCEEEEEECCCcCchhceECCCCCCCC
Confidence 99999999999999999999987542 234577888765 3689999999977999999977666554
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=1.5e-30 Score=240.55 Aligned_cols=139 Identities=17% Similarity=0.293 Sum_probs=116.1
Q ss_pred CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhhCCCCc
Q 018971 199 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW 278 (348)
Q Consensus 199 ~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd~Y~~~M~k~gtW 278 (348)
.+|.+++||||||||||||++||+.+ .+.+ . .+..|.+||+.+++||++|+++ .+++++|++||++|+++++|
T Consensus 29 ~~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~--~-~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~W 101 (219)
T 3phu_A 29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDH--S-YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW 101 (219)
T ss_dssp HHEEEECCCCSSCHHHHHHHHHHCTT--CCTT--T-HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCC
T ss_pred cceEEEccCCCCchHHHHHHHHHhCC--Cccc--h-hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCcc
Confidence 45889999999999999999999842 1211 1 1345999999999999999998 45789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCC
Q 018971 279 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 346 (348)
Q Consensus 279 GG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~~~~~~ 346 (348)
||++||+|+|++|+++|+||+.+.+ +..+.+..||++.. .++|+|+|++.+|||+|++...+.+..
T Consensus 102 GG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~~~I~L~Y~g~~HYdSL~~~~d~~~~~ 167 (219)
T 3phu_A 102 GSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-FTAVNLLHSGQTHFDALRILPQFETDT 167 (219)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-TTSEEEEEETTTEEEEEEECTTTCCSC
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-CCeEEEEECCCcCchhheECCCCCCCC
Confidence 9999999999999999999998743 23455778987753 689999999977999999977766544
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.87 E-value=9.8e-22 Score=182.69 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 018971 238 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 314 (348)
Q Consensus 238 ~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G 314 (348)
....||..++.||+.|+++|+||+++ +|++||+ .++.+++|||++||+|||++|+++|.|++.|.+. +.+....|.
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~ 209 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP 209 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence 45679999999999999999999976 7999999 8999999999999999999999999999987653 223334454
Q ss_pred CCCCCCCeEEEEEcCCCcceeeecCC
Q 018971 315 QEYGKEKPIRVLYHGFGHYDALQNLG 340 (348)
Q Consensus 315 ~e~~~~~pI~LsYhg~gHYDSL~~~~ 340 (348)
++ ..+.|+|+|++ ||||+|+..+
T Consensus 210 ~~--~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 210 EA--ATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp CC--SSCSEEEEEET-TEEEEEEECC
T ss_pred CC--CCCeEEEEECC-CCceecccCC
Confidence 32 35679999997 5999998653
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.78 E-value=1.6e-18 Score=165.70 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEE-
Q 018971 237 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE- 312 (348)
Q Consensus 237 ~~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~- 312 (348)
.....||..++.||+.|+++|+||+.+ ++++||+ +|+.+++|||++||+|||++|+++|.|...|+..+..+..+.
T Consensus 168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~ 247 (284)
T 4dhi_B 168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYD 247 (284)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEE
T ss_pred HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCccccc
Confidence 345689999999999999999999965 7999998 899999999999999999999999999999876544333334
Q ss_pred cCCCC-CCCCeEEEEEcCCCcceeeecCC
Q 018971 313 YGQEY-GKEKPIRVLYHGFGHYDALQNLG 340 (348)
Q Consensus 313 ~G~e~-~~~~pI~LsYhg~gHYDSL~~~~ 340 (348)
|.++. ...+.|+|+|.. ||||.|+..+
T Consensus 248 fp~~~~~~~p~I~LLYrp-gHYDILY~~~ 275 (284)
T 4dhi_B 248 IPSDDQQIAPEITLLYRP-GHYDVIYKKD 275 (284)
T ss_dssp ESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred CCCCCCCCCCEEEEeecC-CCccccccCC
Confidence 52221 123569999998 5999997654
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.77 E-value=2.4e-18 Score=170.35 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 018971 238 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 314 (348)
Q Consensus 238 ~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G 314 (348)
....||..+..||+.|+++|++|+++ ++++||+ +|...++|||++||+|||+.|+++|.|+..|+..++.+....|.
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~ 378 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP 378 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence 45679999999999999999999976 6999999 99999999999999999999999999999887544445555664
Q ss_pred CCCCCCCeEEEEEcCCCcceeee
Q 018971 315 QEYGKEKPIRVLYHGFGHYDALQ 337 (348)
Q Consensus 315 ~e~~~~~pI~LsYhg~gHYDSL~ 337 (348)
++ ..+.|+|+|.. ||||.|+
T Consensus 379 ~~--~~~~I~LLYrP-gHYDiLY 398 (399)
T 4ddg_A 379 EG--SEPKVYLLYRP-GHYDILY 398 (399)
T ss_dssp TT--CCCCCEEEEET-BEEEEEE
T ss_pred CC--CCCEEEEEEcC-CccccCC
Confidence 32 45789999976 5999986
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.76 E-value=2.5e-18 Score=159.52 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=98.1
Q ss_pred CCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHH
Q 018971 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELL 285 (348)
Q Consensus 209 DGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ 285 (348)
||+||++++.+|... ......||..+++||+.|+++|+||+++ +|++||+ .++.+++|||++||+
T Consensus 117 ~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ 184 (234)
T 2zfy_A 117 SVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHII 184 (234)
T ss_dssp CHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHH
T ss_pred CHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHH
Confidence 999999999999752 2568899999999999999999999976 7999997 699999999999999
Q ss_pred HHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeee
Q 018971 286 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 337 (348)
Q Consensus 286 ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~ 337 (348)
|||++|+++|.|++.|...++.+....|+++ ..++|+|+|+. ||||+|.
T Consensus 185 ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~--~~p~I~LlY~p-gHYdiLy 233 (234)
T 2zfy_A 185 ALAQALSVSIQVEYMDRGEGGTTNPHIFPEG--SEPKVYLLYRP-GHYDILY 233 (234)
T ss_dssp HHHHHHTCCEEEEECC-CCSSCCEEEEESTT--CCCSEEEEEET-TEEEEEE
T ss_pred HHHHHhCCCEEEEEcCCCCCCcccceeCCCC--CCCeEEEEECC-CCcccCC
Confidence 9999999999999998765444556677653 45789999996 5999996
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.66 E-value=1.1e-07 Score=93.76 Aligned_cols=140 Identities=20% Similarity=0.334 Sum_probs=88.5
Q ss_pred cEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhh----hhhc-------c----ccCH
Q 018971 201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE----TEWF-------I----EGDF 265 (348)
Q Consensus 201 L~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~----fe~f-------i----e~df 265 (348)
|....+.||||||.+|++..++ |-++.+..+|+.++.-||+.....|+.+... ...| . ..+|
T Consensus 112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW 188 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW 188 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence 5557889999999999999999 7677788889989988887543334332211 1111 1 2356
Q ss_pred HHHHHHhhCCCC-------c--CCHHHHHHHHHhcCCCEEEEeec--C--CCCCceEEEEcCC---------CCCCCCeE
Q 018971 266 DLYVSQIRKPHV-------W--GGEPELLMASHVLRMPITVYMHD--K--DAGGLISIAEYGQ---------EYGKEKPI 323 (348)
Q Consensus 266 d~Y~~~M~k~gt-------W--GG~iEL~ALA~ll~~~I~Vy~~d--~--~s~g~i~I~~~G~---------e~~~~~pI 323 (348)
++-++....+.. + =-++=+.+||++++|||+||... + ..++.+....|+. +.=...||
T Consensus 189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI 268 (390)
T 3dkb_A 189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI 268 (390)
T ss_dssp HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence 665655443321 1 12556899999999999999632 1 1122222222332 11126799
Q ss_pred EEEEcCCCcceeeecCCCCCC
Q 018971 324 RVLYHGFGHYDALQNLGHEGG 344 (348)
Q Consensus 324 ~LsYhg~gHYDSL~~~~~~~~ 344 (348)
.|+|+. |||.+|+.-...++
T Consensus 269 ~LgY~s-~HFsaLV~me~~~~ 288 (390)
T 3dkb_A 269 VLGYDS-HHFVPLVTLKDSGP 288 (390)
T ss_dssp EEEECS-SCEEEEEEBCSSSS
T ss_pred EEEecc-CceeeeeecccCCC
Confidence 999998 59999988654443
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.27 E-value=3.6e-06 Score=84.26 Aligned_cols=137 Identities=23% Similarity=0.377 Sum_probs=92.2
Q ss_pred cEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhh---------hcc--c----cCH
Q 018971 201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE---------WFI--E----GDF 265 (348)
Q Consensus 201 L~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe---------~fi--e----~df 265 (348)
|..-...||||||-+|++..|+ |-++.+..||+.+++.|++.- ..|..+...+| .|. + .+|
T Consensus 189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~-~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW 264 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCS-HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDW 264 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence 4456889999999999999999 777788889988999888643 23444433211 121 2 357
Q ss_pred HHHHHHhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCC---CCceEEEEcCCCC---------CCCCeEEEEEcCCCcc
Q 018971 266 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA---GGLISIAEYGQEY---------GKEKPIRVLYHGFGHY 333 (348)
Q Consensus 266 d~Y~~~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s---~g~i~I~~~G~e~---------~~~~pI~LsYhg~gHY 333 (348)
+.-++..+.||.==-++=+.+||++++|||+||....-. ++.+....|+.=| =...||.|.|+. |||
T Consensus 265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHF 343 (454)
T 3zrh_A 265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHF 343 (454)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEE
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cce
Confidence 777777777876555666899999999999999843110 1111111222111 125799999997 499
Q ss_pred eeeecCCCC
Q 018971 334 DALQNLGHE 342 (348)
Q Consensus 334 DSL~~~~~~ 342 (348)
.+|..-..+
T Consensus 344 saLV~~~~~ 352 (454)
T 3zrh_A 344 SALVAMEND 352 (454)
T ss_dssp EEEEEBCCC
T ss_pred eeeeecccc
Confidence 999886554
No 11
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=96.18 E-value=0.014 Score=53.88 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEeeCCCCchhhHHHHHhhh
Q 018971 202 SVIGIPGDGRCLFRAVAHGAC 222 (348)
Q Consensus 202 ~I~~IpGDGNCLFRAVS~QL~ 222 (348)
.++.|.|||||+|||++.+..
T Consensus 44 ~~R~vRgDGNCFyRaf~f~yl 64 (234)
T 2zfy_A 44 YIRKTRPDGNCFYRAFGFSHL 64 (234)
T ss_dssp EEECBCCSSCHHHHHHHHHHH
T ss_pred ceeeccCCccHHHHHHHHHHH
Confidence 568999999999999998876
Done!