BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018973
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE 295
L + D+EKLI+++K +LIV+D + CGPC + P V L++++ V FA+++ D+
Sbjct: 4 LATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ 60
Query: 296 NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQ 342
N+ +V +PTF+FI+DG+ R+ G+ + +L I R++
Sbjct: 61 NEEAAA---KYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRHK 104
Score = 31.2 bits (69), Expect = 0.98, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP 197
K +L+VV+F A I P + L+++ +VEF V D++E E + + +P
Sbjct: 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNE---EAAAKYSVTAMP 74
Query: 198 HFSFYKSMEKIHEEEGIGPDQL 219
F F K +++ G +L
Sbjct: 75 TFVFIKDGKEVDRFSGANETKL 96
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V+ +HS E I++ +KL+V+D CGPC + P L+++ VF +++
Sbjct: 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA-VFLKVD 72
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
DE + +V +PTFLF+++G ++ R VG+ K EL ++
Sbjct: 73 VDELKPIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 120 RVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
V VHS+E++ + A KLVV++F AS + P DL+++ + F+ V
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLH 237
DE K + E+ ++ +P F F K EG D+++G + + +A V LH
Sbjct: 73 VDE---LKPIAEQFSVEAMPTFLFMK--------EGDVKDRVVGAI---KEELTAKVGLH 118
Query: 238 S 238
+
Sbjct: 119 A 119
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V+ H+K++ + + K K++++D CGPC + P + +++ G V F +++
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVD 74
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQG 343
DE + NV +PTFLFI+DG + VG+ K +L I+++ G
Sbjct: 75 VDE---LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 122
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 125 HSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE 182
H+ +EFD + AK K+V+++F AS I P + +++ F+ V DE
Sbjct: 20 HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE-- 77
Query: 183 KTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSA 232
KE+ E+ ++ +P F F K + + G D L ++ + + +A
Sbjct: 78 -LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 126
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ S I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K++P F F+K +K+ E G ++L
Sbjct: 62 CQDVASECE---VKRMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGP + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ S S I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K +P F F+K +K+ E G ++L
Sbjct: 62 CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D GP + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
+ V Q+ K D++ + K KL+VLD CGPC + P +++LS Q A VV +
Sbjct: 5 AMVYQVKDKADLDGQLT--KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLK 62
Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
++ DE C + N+ +PTF+F+++G + G+ L
Sbjct: 63 VDVDE---CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 103
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ S I PF LS + ++V F+ V D+
Sbjct: 13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 72
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K +P F F+K +K+ E G ++L
Sbjct: 73 CQDVASECE---VKSMPTFQFFKKGQKVGEFSGANKEKL 108
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
+V Q+ SK ++ +D KL+V+D CGP + P LS + + V+F +
Sbjct: 12 SVKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEV 68
Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
+ D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 69 DVDD---CQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
AV+ H+K++ + + + K KL+++D CGPC + P + +++ G +F +
Sbjct: 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA-IFLK 64
Query: 291 MNGDENDSCMQFLRDM----NVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRYQGVRV 346
++ DE L+D+ NV +PTFLFI+DG+ VG K ++ +I+ G
Sbjct: 65 VDVDE-------LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAS 117
Query: 347 T 347
T
Sbjct: 118 T 118
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 115 APRDERVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE 172
A + V H+ +EFD + K+ KLV+++F AS I P + +++
Sbjct: 2 AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI 61
Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208
F+ V DE K++ E ++ +P F F K EK+
Sbjct: 62 FLKVDVDE---LKDVAEAYNVEAMPTFLFIKDGEKV 94
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ K D++ + K KL+VLD CGPC + P +++LS Q A VV +++
Sbjct: 2 VYQVKDKADLDGQLT--KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
DE C + N+ +PTF+F+++G + G+ L
Sbjct: 60 VDE---CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 98
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K P F F+K +K+ E G ++L
Sbjct: 62 CQDVASECE---VKCTPTFQFFKKGQKVGEFSGANKEKL 97
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 224 LYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA 283
L V+ H+ E + + + L+V+D CGPC + P L++++
Sbjct: 9 LEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 68
Query: 284 GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341
V+F +++ DE S D + +PTF+F+++G+I + VG+ K EL I ++
Sbjct: 69 N-VLFLKVDTDELKSVA---SDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 122
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 APRDERVKKVHSIEEFDEALRLAKNK--LVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE 172
A + +V H++E ++E L+ A LVVV+F AS I PF DL+++ +V
Sbjct: 12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 71
Query: 173 FILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDV 223
F+ V DE K + I+ +P F F K + + + G D+L +
Sbjct: 72 FLKVDTDE---LKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ S I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
S+ ++ ++K +P F F+K +K+ E G ++L
Sbjct: 62 SQ---DVASESEVKSMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGP + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D++ + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDDSQDVA---SESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ +ED K +++ KL+V+D CGPC + P + +LS+ M+ VVF +++
Sbjct: 2 VYQVKDQEDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQ 321
DE C +D + +PTFLF+++GQ
Sbjct: 59 VDE---CEDIAQDNQIACMPTFLFMKNGQ 84
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V +V E+F + L A NKLVV++F A+ I P + +LS+ +DV F+ V DE
Sbjct: 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDE 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLM 220
E ++ + +I +P F F K+ +K+ G D+L+
Sbjct: 62 CE---DIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKLL 98
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ + I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
++ ++ ++K P F F+K +K+ E G ++L
Sbjct: 62 AQ---DVASEAEVKATPTFQFFKKGQKVGEFSGANKEKL 97
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGP + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ + V PTF F + GQ G + G+ K +L I
Sbjct: 59 VDDAQDVAS---EAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K +P F F+K +K+ E G ++L
Sbjct: 62 CQDVASECE---VKSMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V+ +HS E I++ +KL+V+D CGP + P L+++ V F +++
Sbjct: 17 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVD 75
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
DE + +V +PTFLF+++G ++ R VG+ K EL ++
Sbjct: 76 VDELKPIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 120 RVKKVHSIEEFDEALRLAKN--KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
V VHS+E++ + A KLVV++F AS S + P DL+++ + F+ V
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLH 237
DE K + E+ ++ +P F F K EG D+++G + + +A V LH
Sbjct: 76 VDE---LKPIAEQFSVEAMPTFLFMK--------EGDVKDRVVGAI---KEELTAKVGLH 121
Query: 238 S 238
+
Sbjct: 122 A 122
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V ++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVND 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K +P F F+K +K+ E G ++L
Sbjct: 62 CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F +
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEV- 57
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D ND C + V +PTF F + GQ G + G+ K +L I
Sbjct: 58 -DVND-CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
++ ++ ++K P F F+K +K+ E G ++L
Sbjct: 62 AQ---DVASEAEVKATPTFQFFKKGQKVGEFSGANKEKL 97
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ + V PTF F + GQ G + G+ K +L I
Sbjct: 59 VDDAQDVAS---EAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ CE +K +P F F+K +K+ E G ++L
Sbjct: 62 CQDVASECE---VKCMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
S S +++L D+E L++ HK KL+V+D CGPC + P +LS + +F
Sbjct: 2 SMSKLIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIF 57
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
+++ D+ + + R N+ +PTF+ I++G+ G VG+
Sbjct: 58 VKVDVDKLE---ETARKYNISAMPTFIAIKNGEKVGDVVGA 95
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 129 EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELC 188
+ + L KNKLVVV+F A+ I P +LS + D F+ V + +K +E
Sbjct: 14 DLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEK-YDAIFVKV---DVDKLEETA 69
Query: 189 EREKIKKVPHFSFYKSMEKIHEEEG 213
+ I +P F K+ EK+ + G
Sbjct: 70 RKYNISAMPTFIAIKNGEKVGDVVG 94
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
+KE ++ + + D K+++ + + CGPC ++ P I+LS +++F ++ DE
Sbjct: 31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYP-SLMFLVIDVDE-- 87
Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
F + PTF F+RDGQ + VG+ K EL
Sbjct: 88 -LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 120 RVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
V + + E +D+ L A K+V+ F+A +I P+ ++LS + F+++
Sbjct: 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVID 84
Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDS 229
DE + +IK P F F + +++ + G +L + DS
Sbjct: 85 VDE---LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDS 133
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFAR 290
S +++L D+E L++ HK KL+V+D CGPC + P +LS + +F +
Sbjct: 13 SELIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVK 68
Query: 291 MNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
++ D+ + R N+ +PTF+ I++G+ G VG+
Sbjct: 69 VDVDKLEETA---RKYNISAMPTFIAIKNGEKVGDVVGA 104
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 129 EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELC 188
+ + L KNKLVVV+F A+ I P +LS + + + F+ V + +K +E
Sbjct: 23 DLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKV---DVDKLEETA 78
Query: 189 EREKIKKVPHFSFYKSMEKIHEEEG 213
+ I +P F K+ EK+ + G
Sbjct: 79 RKYNISAMPTFIAIKNGEKVGDVVG 103
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ ++ ++K +P F F+K +K+ E G ++L
Sbjct: 62 CQ---DVASESEVKSMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
K +++D CGPC V P + +++ + A + A+++ D N + R+ VV +P
Sbjct: 25 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSIP 81
Query: 313 TFLFIRDGQIRGRYVGS-GKGELIGEI 338
T + +DGQ R VG+ GK L+ E+
Sbjct: 82 TLILFKDGQPVKRIVGAKGKAALLREL 108
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
K +++D CGPC V P + +++ + A + A+++ D N + R+ VV +P
Sbjct: 30 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSIP 86
Query: 313 TFLFIRDGQIRGRYVGS-GKGELIGEI 338
T + +DGQ R VG+ GK L+ E+
Sbjct: 87 TLILFKDGQPVKRIVGAKGKAALLREL 113
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 51.2 bits (121), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V+ H+ + ++ + K QKLIV+D C PC + P +L+++ V F +++
Sbjct: 6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVD 64
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
DE + + + NV +PTF+F++DG++ + VG+ K L
Sbjct: 65 VDELKAVAE---EWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 120 RVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
+V H+++ + E K KL+VV+F AS I P +L+++ +V F+ V
Sbjct: 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVD 64
Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
DE K + E ++ +P F F K + + + G D L
Sbjct: 65 VDE---LKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ ++ ++K +P F F+K +K+ E G ++L
Sbjct: 62 CQ---DVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + V+F ++
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVD 58
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D+ C + V +PTF F + GQ G + G+ K +L I
Sbjct: 59 VDD---CQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314
L+++D + CGPC + P + ++ ++ AG V A++N D+N + V +PT
Sbjct: 22 LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ---VRSIPTL 78
Query: 315 LFIRDGQIRGRYVGS 329
+ +RDG++ + VG+
Sbjct: 79 MLVRDGKVIDKKVGA 93
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTK 185
S +F+E LRL L+VV F A + +++ M +L+++ V F+ + E+E
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL---EAEGVP 75
Query: 186 ELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHS 231
E+ E+ +I VP F F+K+ +KI +G +L V + S S
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 121
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTK 185
S +F+E LRL L+VV F A + +++ M +L+++ V F+ + E+E
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL---EAEGVP 81
Query: 186 ELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDS 229
E+ E+ +I VP F F+K+ +KI +G +L V + S
Sbjct: 82 EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS 125
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 239 KEDVEKLIDDHKVDQ-----KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293
KEDV ++ + D+ KL+++D + C PC P K++ + G VF R+N
Sbjct: 2 KEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61
Query: 294 DENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
DEN + +V+ +PT L +GQ+ VG+
Sbjct: 62 DENQ---KIADKYSVLNIPTTLIFVNGQLVDSLVGA 94
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
+KE ++ + + D K+++ + + CGP ++ P I+LS +++F ++ DE
Sbjct: 31 TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDE-- 87
Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
F + PTF F+RDGQ + VG+ K EL
Sbjct: 88 -LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 120 RVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVM 177
V + + E +D+ L A K+V+ F+A S +I P+ ++LS + F+++
Sbjct: 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVID 84
Query: 178 GDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDS 229
DE + +IK P F F + +++ + G +L + DS
Sbjct: 85 VDE---LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDS 133
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F + +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF---LEVD 58
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
+ +++ ++K +P F F+K +K+ E G ++L
Sbjct: 59 VDDXQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + +
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV 59
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEI 338
D D + V +PTF F + GQ G + G+ K +L I
Sbjct: 60 DDXQDVA----SEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
K +++D CGP V P + +++ + A + A+++ D N + R+ VV +P
Sbjct: 27 NKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSIP 83
Query: 313 TFLFIRDGQIRGRYVGS-GKGELIGEI 338
T + +DGQ R VG+ GK L+ E+
Sbjct: 84 TLILFKDGQPVKRIVGAKGKAALLREL 110
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
SH A+V++ + D KV+ + ++D CGPC + P + +L+ G
Sbjct: 1 SHMAIVKVTDADF------DSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADI 54
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
+++ DEN S V+ +PT + +DGQ + VG E + E+L
Sbjct: 55 LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 102
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
SH A+V++ + D KV+ + ++D CGPC + P + +L+ G
Sbjct: 2 SHMAIVKVTDADF------DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADI 55
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
+++ DEN S V+ +PT + +DGQ + VG E + E+L
Sbjct: 56 LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 103
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVP 312
K +++D CGPC + P + +L+++ G V ++N DEN ++ Q+ + +P
Sbjct: 20 KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQY----GIRSIP 75
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGE 337
T L ++GQ+ R VG+ E + E
Sbjct: 76 TLLLFKNGQVVDRLVGAQPKEALKE 100
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVP 312
K++V+D CGPC + P K+S AG V F +++ DE Q +++ + +P
Sbjct: 34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQS---QIAQEVGIRAMP 90
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGEILRY 341
TF+F ++GQ VG+ +L I ++
Sbjct: 91 TFVFFKNGQKIDTVVGADPSKLQAAITQH 119
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 116 PRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ--CNDVEF 173
PR V+ + S ++F + +K+VV++F A+ I P +S + V F
Sbjct: 13 PRGS-VQVISSYDQFKQVT--GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGF 69
Query: 174 ILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSA 232
V DE ++ + I+ +P F F+K+ +KI G P +L + HSA
Sbjct: 70 YKVDVDEQS---QIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAIT----QHSA 121
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 44.3 bits (103), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG 324
C PC K+ PT +++ QM G + FA M+ ++ + M ++N+ +P+ DG IR
Sbjct: 29 CQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMA---ELNIRTLPSLALFVDGMIRE 85
Query: 325 RYVGS 329
+ G+
Sbjct: 86 VFSGT 90
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 220 MGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS 279
MG ++ S++++ +L + + LI K + KL V+D CGPC + P + KL
Sbjct: 1 MGHHHHHHSSYTSITKLTNLTEFRNLI---KQNDKL-VIDFYATWCGPCKMMQPHLTKLI 56
Query: 280 RQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
Q V F + + DE+ ++ V +PTF+ +DGQ+ G+ +G+ L
Sbjct: 57 -QAYPDVRFVKCDVDESPD---IAKECEVTAMPTFVLGKDGQLIGKIIGANPTAL 107
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
+ K+ ++ EF ++ +N +V++F A+ + P + L + DV F+ DE
Sbjct: 14 ITKLTNLTEFRNLIK--QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDE 71
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219
S + CE + +P F K + I + G P L
Sbjct: 72 SPDIAKECE---VTAMPTFVLGKDGQLIGKIIGANPTAL 107
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 230 HSAVVQLHSKEDVEKLID--DHKVDQKLI-----VLDVGLKHCGPCVKVYPTVIKLSRQM 282
S + L E ++K+ D +H + K + ++D CGPC V P + +LS++
Sbjct: 21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY 80
Query: 283 AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317
AG + ++N D+ + RD + +PT F+
Sbjct: 81 AGKIYIYKVNVDKEP---ELARDFGIQSIPTIWFV 112
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK V S EFD + ++N+LV+V+F A +I PF + S+ + FI V DE
Sbjct: 10 VKIVTSQAEFDSII--SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 181 SEKTKELCEREKIKKVPHFSFYKS 204
E+ E+E I +P F YK+
Sbjct: 68 ---VSEVTEKENITSMPTFKVYKN 88
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313
+L+++D + CGPC ++ P + S+ +VF +++ DE + N+ +PT
Sbjct: 27 ELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE---VSEVTEKENITSMPT 82
Query: 314 FLFIRDGQIRGRYVGSGKGELIGEILRY 341
F ++G +G+ L I +Y
Sbjct: 83 FKVYKNGSSVDTLLGANDSALKQLIEKY 110
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
SH A+V++ + D KV+ + ++D CG C + P + +L+ G
Sbjct: 2 SHMAIVKVTDADF------DSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADI 55
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
+++ DEN S V+ +PT + +DGQ + VG E + E+L
Sbjct: 56 LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 103
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
VK++ S F EAL A +KLVVV+F+A+ I PF LS + ++V F+ V D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 181 SEKTKELCEREKIKKVPHFSFYKSME 206
++ ++ + I+ +P +K+ E
Sbjct: 62 AQ---DVAPKYGIRGIPTLLLFKNGE 84
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V Q+ SK ++ +D KL+V+D CGPC + P LS + + +
Sbjct: 2 VKQIESKTAFQEALD--AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV 59
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGEL 334
D D ++ + +PT L ++G++ VG+ KG+L
Sbjct: 60 DDAQDVAPKY----GIRGIPTLLLFKNGEVAATKVGALSKGQL 98
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 244 KLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQF 302
K D+ K++V+D + C PC+ + P + +L+ V F ++N +E+ D M++
Sbjct: 14 KNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQDIAMRY 72
Query: 303 LRDMNVVEVPTFLFIRDGQIRGRYVGS 329
++ +PT +F ++G++ + +G+
Sbjct: 73 ----GIMSLPTIMFFKNGELVDQILGA 95
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG 178
E VK ++S + FDE + KNK+VVV+F A + P + +L+ ND +
Sbjct: 6 EPVKHLNS-KNFDEFI--TKNKIVVVDFWAEWCAPCLILAPVIEELA---NDYPQVAFGK 59
Query: 179 DESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDV 223
+E+++++ R I +P F+K+ E + DQ++G V
Sbjct: 60 LNTEESQDIAMRYGIMSLPTIMFFKNGELV--------DQILGAV 96
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 230 HSAVVQLHSKEDVEKLID--DHKVDQKLI-----VLDVGLKHCGPCVKVYPTVIKLSRQM 282
S + L E ++K+ D +H + K + ++D CGPC V P + +LS++
Sbjct: 21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY 80
Query: 283 AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317
AG + ++N D+ + RD + +PT F+
Sbjct: 81 AGKIYIYKVNVDKEP---ELARDFGIQGIPTIWFV 112
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 248 DHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMN 307
D KV+ + ++D CG C + P + +L+ G +++ DEN S
Sbjct: 14 DSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTA---AKYE 70
Query: 308 VVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
V+ +PT + +DGQ + VG E + E+L
Sbjct: 71 VMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 102
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
+++D CGPC + P + +L+++ +G + ++N DE N+ +PT L
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG---IATQYNIRSIPTVL 76
Query: 316 FIRDGQIRGRYVGS-GKGELIGEILRY 341
F ++G+ + +G+ K L I +Y
Sbjct: 77 FFKNGERKESIIGAVPKSTLTDSIEKY 103
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
+++D CGPC + P + +L+++ +G + ++N DE N+ +PT L
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG---IATQYNIRSIPTVL 77
Query: 316 FIRDGQIRGRYVGS-GKGELIGEILRY 341
F ++G+ + +G+ K L I +Y
Sbjct: 78 FFKNGERKESIIGAVPKSTLTDSIEKY 104
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
+ +++ D CGPC + P + +L ++M + +++ DEN + V+ +P
Sbjct: 17 EGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDEN---QETAGKYGVMSIP 73
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGEILR 340
T L ++DG++ VG E + E++
Sbjct: 74 TLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRSIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 89
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 90 LFKNGEVAATKVGALSKGQL 109
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFA 289
+ +VV ++S E ++ + L V CGPC + + K++ + TV FA
Sbjct: 18 YPSVVDVYSVEQFRNIMSE----DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFA 72
Query: 290 RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
+++ D N + R V+++PTF+ R G++ G +G+ G L
Sbjct: 73 KVDADNNSEIVSKCR---VLQLPTFIIARSGKMLGHVIGANPGML 114
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC 299
E EK L ++D CGPC V P + +L+R AG + ++N DE+
Sbjct: 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG- 95
Query: 300 MQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILR 340
V VPT + R G +VG+ ++ E LR
Sbjct: 96 --LAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLR 134
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + ++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC 299
E ++ D+ L+++D + C PC + P + +++++ G ++ A+++ DEN
Sbjct: 6 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 65
Query: 300 MQFLRDMNVVEVPTFLFIRDGQ 321
R V +PT + +DGQ
Sbjct: 66 AXRYR---VXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC 299
E ++ D+ L+++D + C PC + P + +++++ G ++ A+++ DEN
Sbjct: 5 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 64
Query: 300 MQFLRDMNVVEVPTFLFIRDGQ 321
R V +PT + +DGQ
Sbjct: 65 AXRYR---VXSIPTVILFKDGQ 83
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G + VG+ KG+L
Sbjct: 80 LFKNGDVAATKVGALSKGQL 99
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAACKVGALSKGQL 99
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V ++ S E+D AL + +KLVVV+F A+ S I P + + Q +D F + DE
Sbjct: 10 VTQLKSASEYDSALA-SGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDE 68
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P FYK +++ G P
Sbjct: 69 ---VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 101
Score = 35.0 bits (79), Expect = 0.056, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V QL S + + + KL+V+D CGP + P + K + Q + F +++
Sbjct: 10 VTQLKSASEYDSALAS---GDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLD 65
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
DE Q V +PT +F + G+ R VG+
Sbjct: 66 VDEVSDVAQ---KAEVSSMPTLIFYKGGKEVTRVVGA 99
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V ++ S E+D AL + +KLVVV+F A+ S I P + + Q +D F + DE
Sbjct: 2 VTQLKSASEYDSALA-SGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDE 60
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P FYK +++ G P
Sbjct: 61 ---VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 93
Score = 35.0 bits (79), Expect = 0.058, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V QL S + + + KL+V+D CGP + P + K + Q + F +++
Sbjct: 2 VTQLKSASEYDSALAS---GDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLD 57
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
DE Q V +PT +F + G+ R VG+
Sbjct: 58 VDEVSDVAQ---KAEVSSMPTLIFYKGGKEVTRVVGA 91
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + PT L
Sbjct: 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGTPTLL 80
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 81 LFKNGEVAATKVGALSKGQL 100
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERG---IPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313
K +VLD+ + CGPC + P KL+ + V+F +++ ++ + + +++ + VPT
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLA--KELGIRVVPT 94
Query: 314 FLFIRDGQIRGRYVGSGKGELIGEI 338
F +++ + G G+ +L+ I
Sbjct: 95 FKILKENSVVGEVTGAKYDKLLEAI 119
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN-GDENDSCMQFLRDMNVVEVPTF 314
+V+D + CGPC + P + K+ + G VV A+++ D D +++ V VPT
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY----EVSAVPTV 89
Query: 315 LFIRDGQIRGRYVG 328
L +++G + ++VG
Sbjct: 90 LAMKNGDVVDKFVG 103
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF 288
SH A+V++ + D KV+ + ++D CG + P + +L+ G
Sbjct: 2 SHMAIVKVTDADF------DSKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADI 55
Query: 289 ARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339
+++ DEN S V+ +PT + +DGQ + VG E + E+L
Sbjct: 56 LKLDVDENPSTA---AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVL 103
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V QL S + + + KL+V+D CGPC + P + K + Q + F +++
Sbjct: 2 VTQLKSASEYDSALAS---GDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLD 57
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
DE Q V +PT +F + G+ R VG+
Sbjct: 58 VDEVSDVAQ---KAEVSSMPTLIFYKGGKEVTRVVGA 91
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V ++ S E+D AL + +KLVVV+F A+ I P + + Q +D F + DE
Sbjct: 2 VTQLKSASEYDSALA-SGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE 60
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P FYK +++ G P
Sbjct: 61 ---VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 93
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V QL S + + + KL+V+D CGPC + P + K + Q + F +++
Sbjct: 9 VTQLKSASEYDSALAS---GDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLD 64
Query: 293 GDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
DE Q V +PT +F + G+ R VG+
Sbjct: 65 VDEVSDVAQ---KAEVSSMPTLIFYKGGKEVTRVVGA 98
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V ++ S E+D AL + +KLVVV+F A+ I P + + Q +D F + DE
Sbjct: 9 VTQLKSASEYDSALA-SGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE 67
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P FYK +++ G P
Sbjct: 68 ---VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 100
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313
K +VLD+ + CGPC + P KL+ + V+F +++ ++ + + +++ + VPT
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLA--KELGIRVVPT 82
Query: 314 FLFIRDGQIRGRYVGSGKGELIGEI 338
F +++ + G G+ +L+ I
Sbjct: 83 FKILKENSVVGEVTGAKYDKLLEAI 107
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGP + P + +++ + G + A++N D+N + +PT L
Sbjct: 43 ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 99
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 100 LFKNGEVAATKVGALSKGQL 119
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292
V+ L SK D ++ V+D + C PC+ + P + +L+ V F ++N
Sbjct: 1 VIHLDSKN-----FDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLN 54
Query: 293 GDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329
DEN D ++ V+ +PT +F +DG+ +G+
Sbjct: 55 SDENPDIAARY----GVMSLPTVIFFKDGEPVDEIIGA 88
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
+ +++ D CGP + P + +L ++M + +++ DEN + V+ +P
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN---QETAGKYGVMSIP 73
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGEILR 340
T L ++DG++ VG E + E++
Sbjct: 74 TLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVP 312
K +++D CGPC + P + + + A V A++N DEN ++ QF ++ +P
Sbjct: 18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF----GIMSIP 73
Query: 313 TFLFIRDGQIRGRYVG 328
T + + G+ + +G
Sbjct: 74 TLILFKGGEPVKQLIG 89
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312
+ +++ D CGP + P + +L ++M + +++ DEN + V+ +P
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN---QETAGKYGVMSIP 73
Query: 313 TFLFIRDGQIRGRYVGSGKGELIGEILR 340
T L ++DG++ VG E + E++
Sbjct: 74 TLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
+V+ + SK + + K + K IV+D CGPC + P LS AG V+F ++
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
+ D + + + +PTF +DG VG+ + +L
Sbjct: 63 DVDAVAAVAE---AAGITAMPTFHVYKDGVKADDLVGASQDKL 102
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVP 312
K +++D CGPC + P + + + A V A++N DEN ++ QF ++ +P
Sbjct: 18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF----GIMSIP 73
Query: 313 TFLFIRDGQIRGRYVG 328
T + + G+ + +G
Sbjct: 74 TLILFKGGRPVKQLIG 89
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTF 314
+++D CGPC + P + + + A V A++N DEN ++ QF ++ +PT
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF----GIMSIPTL 75
Query: 315 LFIRDGQIRGRYVG 328
+ + G+ + +G
Sbjct: 76 ILFKGGEPVKQLIG 89
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGPC + + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CG C + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
I++D + CGP + P + +++ + G + A++N D+N + +PT L
Sbjct: 23 ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLL 79
Query: 316 FIRDGQIRGRYVGS-GKGEL 334
++G++ VG+ KG+L
Sbjct: 80 LFKNGEVAATKVGALSKGQL 99
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTF 314
+++D CGPC + P + + + A V A++N DEN ++ QF ++ +PT
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF----GIMSIPTL 75
Query: 315 LFIRDGQIRGRYVG 328
+ + G+ + +G
Sbjct: 76 ILFKGGRPVKQLIG 89
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 247 DDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM 306
D KL+V+D CGPC + P + K S Q F +++ DE Q
Sbjct: 12 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQ---KN 67
Query: 307 NVVEVPTFLFIRDGQIRGRYVGS 329
V +PT L ++G+ + VG+
Sbjct: 68 EVSAMPTLLLFKNGKEVAKVVGA 90
Score = 34.7 bits (78), Expect = 0.091, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V + + EFD A+ A++KLVVV+F A+ I P + S Q +F + DE
Sbjct: 2 VTQFKTASEFDSAI--AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 59
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P +K+ +++ + G P
Sbjct: 60 ---LGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANP 92
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 247 DDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM 306
D KL+V+D CGPC + P + K S Q F +++ DE Q
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQ---KN 73
Query: 307 NVVEVPTFLFIRDGQIRGRYVGS 329
V +PT L ++G+ + VG+
Sbjct: 74 EVSAMPTLLLFKNGKEVAKVVGA 96
Score = 34.7 bits (78), Expect = 0.091, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V + + EFD A+ A++KLVVV+F A+ I P + S Q +F + DE
Sbjct: 8 VTQFKTASEFDSAI--AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P +K+ +++ + G P
Sbjct: 66 ---LGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANP 98
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 256 IVLDVGLKHCG-PCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314
I++D + CG PC + P + +++ + G + A++N D+N + +PT
Sbjct: 23 ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTL 79
Query: 315 LFIRDGQIRGRYVGS-GKGEL 334
L ++G++ VG+ KG+L
Sbjct: 80 LLFKNGEVAATKVGALSKGQL 100
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180
V + + EFD A+ A++KLVVV+F A+ S I P + S Q +F + DE
Sbjct: 8 VTQFKTASEFDSAI--AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 181 SEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216
++ ++ ++ +P +K+ +++ + G P
Sbjct: 66 ---LGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANP 98
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 247 DDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM 306
D KL+V+D CGP + P + K S Q F +++ DE Q
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQ---KN 73
Query: 307 NVVEVPTFLFIRDGQIRGRYVGS 329
V +PT L ++G+ + VG+
Sbjct: 74 EVSAMPTLLLFKNGKEVAKVVGA 96
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV 311
+ K +++D CGPC ++ P++ ++ + + ++N DEN V+ +
Sbjct: 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAA---KYGVMSI 78
Query: 312 PTFLFIRDGQIRGRYVGS 329
PT + G++ VG+
Sbjct: 79 PTLNVYQGGEVAKTIVGA 96
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 266 GPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGR 325
GPC + P + +++ + G + A++N D+N + +PT L ++G++
Sbjct: 48 GPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---KYGIRGIPTLLLFKNGEVAAT 104
Query: 326 YVGS-GKGEL 334
VG+ KG+L
Sbjct: 105 KVGALSKGQL 114
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313
K +VLD+ + CGP + P KL+ + V+F +++ ++ + + +++ + VPT
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLA--KELGIRVVPT 81
Query: 314 FLFIRDGQIRGRYVGSGKGELIGEI 338
F +++ + G G+ +L+ I
Sbjct: 82 FKILKENSVVGEVTGAKYDKLLEAI 106
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 34.7 bits (78), Expect = 0.074, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291
+V+ + SK + + K + K IV+ CGPC + P LS AG V+F ++
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 292 NGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334
+ D + + + +PTF +DG VG+ + +L
Sbjct: 63 DVDAVAAVAE---AAGITAMPTFHVYKDGVKADDLVGASQDKL 102
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297
+ E ++KL+ D V+D CGPC P + + + AG V F ++N +
Sbjct: 44 TAETLDKLLQDDLP----XVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP 99
Query: 298 SCMQFLRDMNVVEVPTFLFIRDGQ 321
+ R + +PT R+G+
Sbjct: 100 ALSTRFR---IRSIPTIXLYRNGK 120
>pdb|2KCD|A Chain A, Solution Nmr Structure Of Ssp0047 From Staphylococcus
Saprophyticus. Northeast Structural Genomics Consortium
Target Syr6
Length = 120
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 114 NAPRDERVKKVHSIEEF------DEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLS 165
N PRDE+ + SIEE D+ +RL NK++ S +L S IYPF++
Sbjct: 16 NLPRDEKWE-CESIEEVADDILPDQYVRLGPLSNKILQTNTYYSDTLHKSNIYPFILYYQ 74
Query: 166 RQCNDVEFI 174
+Q + FI
Sbjct: 75 KQLIAIGFI 83
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313
+L V+ ++ CGPC+++ P +S + VF ++ + C N+ PT
Sbjct: 22 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQ---CQGTAATNNISATPT 77
Query: 314 FLFIRDGQIRGRYVGS 329
F F R+ +Y G+
Sbjct: 78 FQFFRNKVRIDQYQGA 93
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE- 295
H +E +E+ + H +++ L +LD ++ + P V+ S F ++ D
Sbjct: 269 HYQEILER--NRHILEENLAILDQWIEEEPLVSYIRPAVVSTS--------FVKIAVDXP 318
Query: 296 -NDSCMQFLRDMNVVEVPTFLFIRDGQIR 323
D C+Q L++ V+ VP F RDG +R
Sbjct: 319 XEDFCLQLLQEHGVLLVPGNRFERDGYVR 347
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313
K ++D CGPC V P + +L+++ G +V +++ ++ + + +P+
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKE---QELAGAFGIRSIPS 95
Query: 314 FLFI 317
LFI
Sbjct: 96 ILFI 99
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILV 176
+ E + KV++ E+ E + +K +V+F A + P + +L+++ + I++
Sbjct: 16 KAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ--IVI 73
Query: 177 MGDESEKTKELCEREKIKKVPHFSF 201
++EK +EL I+ +P F
Sbjct: 74 YKVDTEKEQELAGAFGIRSIPSILF 98
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN-DSCMQFLRDMNVVEVPTFLFIRDGQIR 323
CG C ++ P + ++ G V A+++ N ++C ++ V PT RDG+
Sbjct: 33 CGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKY----GVSGYPTLKIFRDGEEA 88
Query: 324 GRYVGSGKGELIGEILRYQG 343
G Y G + I L+ Q
Sbjct: 89 GAYDGPRTADGIVSHLKKQA 108
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
+++D CGPC ++ P + +AG V A+++ + + R + +P F+
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHR---IQGIPAFI 123
Query: 316 FIRDGQIRGRYVGSGKG-ELIGEILRYQGVRV 346
G+ R G+ EL+G + G R
Sbjct: 124 LFHKGRELARAAGARPASELVGFVRGKLGARA 155
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 250 KVDQKLIVLDVGLKHCGPCVKVYPTVIK---LSRQMAGTVVFARMNGDENDSCMQFLRDM 306
+V+ KL+ +D CGPC ++ V K ++ V +M+ ++ + ++ +
Sbjct: 24 EVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEG-VELRKKY 82
Query: 307 NVVEVPTFLFIR-DGQIRGRYVGS 329
V PT LFI G++ R VG+
Sbjct: 83 GVHAYPTLLFINSSGEVVYRLVGA 106
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV-FARMNGDEN 296
K I +DV CGPC P + +L + AG + F ++ D+N
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKN 74
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 174 ILVMGDESEKTKE---LCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSH 230
+ +MGD S + E L + +PH + + ME E GI D++ V YG++
Sbjct: 211 VRIMGDASTRVVEKANLTSDDIDLFIPHQANIRIMESARERLGISKDKMSVSVNKYGNTS 270
Query: 231 SAVVQLHSKEDVE--KLIDDHKV 251
+A + L ++++ KL DD +
Sbjct: 271 AASIPLSIDQELKNGKLKDDDTI 293
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVV---FARMNGDENDSCMQFLRDMNVVE-VP 312
+L V K C C + +P +I+ S+++ +V + + G+ S + + VE P
Sbjct: 35 ILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTP 94
Query: 313 TFLFIRDGQIRGRYVGS 329
T +F ++G+I + VG+
Sbjct: 95 TLVFYKEGRIVDKLVGA 111
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 189 EREKIKKVPHFSFYKSMEKIHEEEG-IGPDQLMGD-VLYYG 227
++ ++ V H S KSME ++E G G D + D +LYYG
Sbjct: 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 372
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 200 SFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSA 232
S YK + I +EEGIGP+ L G + G+S A
Sbjct: 209 SRYKITDIIGKEEGIGPENLRGSGMIAGESSLA 241
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315
+++D CGPC + P V +++ + + ++N DE+ + + + +PT +
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVAS---EYGIRSIPTIM 78
Query: 316 FIRDGQ 321
+ G+
Sbjct: 79 VFKGGK 84
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG 178
E + K+H+ +A K E+AA + +I D+ R+ ND L
Sbjct: 41 EMIAKLHAATPAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETL 100
Query: 179 DESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYG 227
D + +E + F F+ GI P L GD + G
Sbjct: 101 DTGKPIQETIVADPTSGADAFEFFG---------GIAPSALNGDYIPLG 140
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 228 DSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIK 277
D S L + ED EKL+ + IVLD+ + H PC +++ ++
Sbjct: 300 DYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALR 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,666,379
Number of Sequences: 62578
Number of extensions: 377783
Number of successful extensions: 1148
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 174
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)