Query 018973
Match_columns 348
No_of_seqs 408 out of 2387
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02187 GlrX_arch Glutaredox 100.0 5.2E-28 1.1E-32 216.3 18.6 198 129-340 8-214 (215)
2 KOG0190 Protein disulfide isom 99.9 1E-25 2.2E-30 218.0 13.9 84 118-207 24-111 (493)
3 PTZ00102 disulphide isomerase; 99.9 3.7E-24 8E-29 213.1 20.5 90 252-344 374-467 (477)
4 KOG0191 Thioredoxin/protein di 99.9 6.1E-24 1.3E-28 205.9 15.3 207 127-345 37-255 (383)
5 cd02985 TRX_CDSP32 TRX family, 99.9 7.2E-24 1.6E-28 167.6 10.2 102 125-226 1-102 (103)
6 PTZ00062 glutaredoxin; Provisi 99.9 6.2E-23 1.3E-27 180.1 15.8 171 125-323 4-179 (204)
7 TIGR01130 ER_PDI_fam protein d 99.9 1.9E-22 4.1E-27 199.6 19.2 90 252-346 363-458 (462)
8 KOG0907 Thioredoxin [Posttrans 99.9 1.8E-23 4E-28 165.0 7.4 94 125-221 5-100 (106)
9 KOG0910 Thioredoxin-like prote 99.9 4.8E-23 1E-27 168.8 9.2 98 119-220 42-141 (150)
10 cd02954 DIM1 Dim1 family; Dim1 99.9 2.1E-22 4.5E-27 160.2 12.4 92 126-220 1-94 (114)
11 KOG0910 Thioredoxin-like prote 99.9 3.7E-22 8E-27 163.5 11.9 107 231-343 42-149 (150)
12 KOG0908 Thioredoxin-like prote 99.9 2.3E-22 5E-27 175.7 6.9 105 120-227 2-106 (288)
13 cd02985 TRX_CDSP32 TRX family, 99.8 2.9E-20 6.3E-25 146.9 13.9 102 237-341 1-102 (103)
14 PHA02278 thioredoxin-like prot 99.8 1.3E-20 2.8E-25 148.5 10.2 88 125-214 2-91 (103)
15 cd02986 DLP Dim1 family, Dim1- 99.8 4.8E-20 1.1E-24 145.6 12.2 85 126-213 1-86 (114)
16 cd02954 DIM1 Dim1 family; Dim1 99.8 4.3E-20 9.4E-25 146.9 11.2 98 239-341 2-110 (114)
17 KOG0907 Thioredoxin [Posttrans 99.8 7E-20 1.5E-24 144.6 12.0 99 239-341 7-105 (106)
18 cd02989 Phd_like_TxnDC9 Phosdu 99.8 5.8E-20 1.2E-24 147.6 11.2 93 117-214 2-94 (113)
19 PHA02278 thioredoxin-like prot 99.8 1.5E-19 3.3E-24 142.4 12.6 97 237-337 2-100 (103)
20 PLN00410 U5 snRNP protein, DIM 99.8 5.5E-20 1.2E-24 151.9 10.2 92 120-214 4-98 (142)
21 cd02948 TRX_NDPK TRX domain, T 99.8 6.9E-20 1.5E-24 144.5 9.4 93 122-220 2-96 (102)
22 cd02957 Phd_like Phosducin (Ph 99.8 1E-19 2.3E-24 146.2 10.3 93 118-215 3-96 (113)
23 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.5E-19 3.2E-24 144.8 10.9 93 118-214 8-103 (113)
24 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.6E-19 5.7E-24 140.8 10.8 89 120-214 2-91 (101)
25 PTZ00051 thioredoxin; Provisio 99.8 4.1E-19 8.9E-24 138.6 10.7 96 120-220 1-96 (98)
26 cd02962 TMX2 TMX2 family; comp 99.8 7.2E-19 1.6E-23 147.9 12.3 95 118-216 27-129 (152)
27 cd02999 PDI_a_ERp44_like PDIa 99.8 2.3E-19 5.1E-24 140.9 8.7 84 127-214 6-90 (100)
28 PF00085 Thioredoxin: Thioredo 99.8 2.3E-18 5E-23 135.0 13.8 99 237-341 4-103 (103)
29 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 9.3E-19 2E-23 138.2 11.3 89 121-214 3-93 (104)
30 cd02948 TRX_NDPK TRX domain, T 99.8 2.3E-18 5E-23 135.8 13.5 97 236-340 4-101 (102)
31 cd02956 ybbN ybbN protein fami 99.8 1.9E-18 4.1E-23 134.4 12.1 94 241-339 2-96 (96)
32 cd03065 PDI_b_Calsequestrin_N 99.8 2.2E-18 4.9E-23 139.0 12.8 103 232-342 10-119 (120)
33 cd02987 Phd_like_Phd Phosducin 99.8 1.1E-18 2.3E-23 150.8 11.0 97 116-216 59-156 (175)
34 PLN00410 U5 snRNP protein, DIM 99.8 4E-18 8.6E-23 140.8 13.4 105 233-342 5-120 (142)
35 cd03065 PDI_b_Calsequestrin_N 99.8 1.3E-18 2.8E-23 140.5 9.6 93 117-215 7-106 (120)
36 COG3118 Thioredoxin domain-con 99.8 8E-19 1.7E-23 158.5 9.3 97 121-221 25-124 (304)
37 cd02984 TRX_PICOT TRX domain, 99.8 1.4E-18 3E-23 135.3 9.2 92 126-220 1-93 (97)
38 cd02956 ybbN ybbN protein fami 99.8 1.7E-18 3.6E-23 134.7 9.6 85 128-215 1-86 (96)
39 PF00085 Thioredoxin: Thioredo 99.8 1.4E-18 3.1E-23 136.2 9.0 93 124-220 3-97 (103)
40 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.1E-18 9E-23 136.4 11.3 100 233-337 11-112 (113)
41 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.8E-18 8.3E-23 134.1 10.8 93 238-337 7-100 (101)
42 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 5.4E-18 1.2E-22 133.9 10.9 95 238-338 7-104 (104)
43 cd02965 HyaE HyaE family; HyaE 99.8 2.9E-18 6.2E-23 135.6 8.7 85 126-215 16-103 (111)
44 PRK10996 thioredoxin 2; Provis 99.8 2.2E-17 4.7E-22 137.6 14.3 98 238-342 41-139 (139)
45 COG3118 Thioredoxin domain-con 99.7 6.3E-18 1.4E-22 152.7 11.0 107 233-344 25-132 (304)
46 cd02996 PDI_a_ERp44 PDIa famil 99.7 7E-18 1.5E-22 134.3 9.9 88 120-213 2-97 (108)
47 PRK09381 trxA thioredoxin; Pro 99.7 3.5E-17 7.5E-22 130.4 13.9 104 232-342 4-108 (109)
48 cd02999 PDI_a_ERp44_like PDIa 99.7 1.3E-17 2.8E-22 131.0 10.8 91 241-338 8-100 (100)
49 cd02963 TRX_DnaJ TRX domain, D 99.7 1.6E-17 3.5E-22 133.0 11.2 99 238-340 10-110 (111)
50 cd02984 TRX_PICOT TRX domain, 99.7 3.9E-17 8.4E-22 127.1 12.5 96 238-338 1-96 (97)
51 cd02965 HyaE HyaE family; HyaE 99.7 2.6E-17 5.7E-22 130.1 11.5 92 238-336 16-110 (111)
52 cd02963 TRX_DnaJ TRX domain, D 99.7 1.1E-17 2.5E-22 133.9 9.0 86 126-214 10-98 (111)
53 cd02986 DLP Dim1 family, Dim1- 99.7 5.5E-17 1.2E-21 128.2 12.5 98 239-341 2-110 (114)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.7 6.2E-17 1.3E-21 130.0 12.2 92 230-329 3-94 (113)
55 PTZ00051 thioredoxin; Provisio 99.7 1.3E-16 2.8E-21 124.4 12.4 95 233-335 2-96 (98)
56 PRK09381 trxA thioredoxin; Pro 99.7 6E-17 1.3E-21 129.0 10.7 91 119-214 3-94 (109)
57 PRK10996 thioredoxin 2; Provis 99.7 6E-17 1.3E-21 134.9 10.9 91 118-214 34-125 (139)
58 cd02988 Phd_like_VIAF Phosduci 99.7 3.9E-17 8.4E-22 142.9 9.8 93 116-215 79-172 (192)
59 TIGR01068 thioredoxin thioredo 99.7 2.2E-16 4.8E-21 123.1 13.0 98 239-342 3-101 (101)
60 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.1E-16 2.5E-21 125.4 11.3 93 238-338 6-102 (102)
61 cd02957 Phd_like Phosducin (Ph 99.7 1.9E-16 4E-21 127.2 12.7 92 231-329 4-95 (113)
62 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.1E-16 2.4E-21 127.4 11.1 97 234-338 4-108 (108)
63 cd02994 PDI_a_TMX PDIa family, 99.7 8.5E-17 1.9E-21 126.3 10.1 85 120-213 2-88 (101)
64 cd03005 PDI_a_ERp46 PDIa famil 99.7 7.6E-17 1.7E-21 126.5 9.7 88 121-215 2-93 (102)
65 cd02994 PDI_a_TMX PDIa family, 99.7 2.2E-16 4.8E-21 123.9 12.2 97 233-340 3-101 (101)
66 KOG0908 Thioredoxin-like prote 99.7 1E-16 2.2E-21 140.5 11.2 107 232-344 2-108 (288)
67 KOG4277 Uncharacterized conser 99.7 1.8E-16 3.9E-21 142.2 12.8 193 127-341 30-230 (468)
68 cd02950 TxlA TRX-like protein 99.7 3.2E-16 6.9E-21 131.0 12.8 99 240-343 11-111 (142)
69 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.4E-16 5.3E-21 125.3 10.9 95 238-338 6-108 (109)
70 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.2E-16 4.8E-21 125.5 10.7 83 121-206 2-85 (109)
71 cd02962 TMX2 TMX2 family; comp 99.7 3.9E-16 8.5E-21 131.3 12.6 92 232-329 29-127 (152)
72 cd02992 PDI_a_QSOX PDIa family 99.7 2.6E-16 5.6E-21 126.6 11.0 96 120-219 2-101 (114)
73 cd02949 TRX_NTR TRX domain, no 99.7 5.5E-16 1.2E-20 120.9 12.5 92 242-339 5-97 (97)
74 cd02950 TxlA TRX-like protein 99.7 2E-16 4.4E-21 132.1 9.2 87 127-216 10-98 (142)
75 cd02997 PDI_a_PDIR PDIa family 99.7 6.6E-16 1.4E-20 121.5 11.5 94 238-338 6-104 (104)
76 PTZ00443 Thioredoxin domain-co 99.7 3.6E-16 7.8E-21 139.6 10.7 98 119-220 30-132 (224)
77 PTZ00443 Thioredoxin domain-co 99.7 8.7E-16 1.9E-20 137.1 13.1 108 232-343 31-140 (224)
78 cd02952 TRP14_like Human TRX-r 99.7 4.4E-16 9.5E-21 125.3 9.7 87 123-209 5-104 (119)
79 TIGR01126 pdi_dom protein disu 99.7 9.5E-16 2.1E-20 119.9 11.3 96 239-341 3-101 (102)
80 cd03001 PDI_a_P5 PDIa family, 99.7 9.9E-16 2.1E-20 120.3 11.4 95 238-338 6-102 (103)
81 cd03001 PDI_a_P5 PDIa family, 99.7 9.6E-16 2.1E-20 120.4 11.0 88 121-213 2-91 (103)
82 cd02987 Phd_like_Phd Phosducin 99.7 2.5E-15 5.5E-20 129.7 14.0 105 230-340 61-173 (175)
83 cd02997 PDI_a_PDIR PDIa family 99.6 8.9E-16 1.9E-20 120.7 10.0 90 121-214 2-94 (104)
84 cd02953 DsbDgamma DsbD gamma f 99.6 7.4E-16 1.6E-20 121.7 9.1 95 240-338 2-103 (104)
85 cd02975 PfPDO_like_N Pyrococcu 99.6 2.7E-15 5.9E-20 120.5 12.2 89 252-344 21-112 (113)
86 cd02953 DsbDgamma DsbD gamma f 99.6 1.2E-15 2.6E-20 120.5 9.7 85 128-214 2-93 (104)
87 cd03000 PDI_a_TMX3 PDIa family 99.6 2.7E-15 5.8E-20 118.6 11.6 93 240-341 7-103 (104)
88 TIGR01295 PedC_BrcD bacterioci 99.6 3.8E-15 8.3E-20 121.1 12.8 97 237-339 11-121 (122)
89 cd02993 PDI_a_APS_reductase PD 99.6 2E-15 4.3E-20 120.4 10.5 91 120-213 2-97 (109)
90 TIGR01295 PedC_BrcD bacterioci 99.6 2.7E-15 5.9E-20 122.0 10.6 90 121-214 8-109 (122)
91 TIGR01068 thioredoxin thioredo 99.6 2.5E-15 5.5E-20 117.1 9.8 85 126-214 2-87 (101)
92 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 2.7E-15 5.8E-20 117.9 10.0 87 121-213 2-93 (104)
93 cd02975 PfPDO_like_N Pyrococcu 99.6 1.9E-15 4.2E-20 121.3 8.8 79 130-213 15-95 (113)
94 cd02949 TRX_NTR TRX domain, no 99.6 3.4E-15 7.4E-20 116.5 9.4 82 130-215 5-87 (97)
95 TIGR01126 pdi_dom protein disu 99.6 4.4E-15 9.6E-20 116.1 9.5 84 126-214 2-88 (102)
96 cd02998 PDI_a_ERp38 PDIa famil 99.6 5.2E-15 1.1E-19 116.4 9.8 95 238-338 6-105 (105)
97 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 5.4E-15 1.2E-19 116.1 9.8 94 238-338 6-104 (104)
98 cd03000 PDI_a_TMX3 PDIa family 99.6 2.8E-15 6E-20 118.5 7.6 80 127-213 6-89 (104)
99 cd02998 PDI_a_ERp38 PDIa famil 99.6 6.8E-15 1.5E-19 115.7 8.8 88 121-213 2-94 (105)
100 cd02961 PDI_a_family Protein D 99.6 1.2E-14 2.6E-19 112.6 10.0 94 238-338 4-101 (101)
101 cd02951 SoxW SoxW family; SoxW 99.6 1.7E-14 3.8E-19 117.7 10.9 100 240-343 4-120 (125)
102 cd02961 PDI_a_family Protein D 99.6 1.7E-14 3.7E-19 111.8 10.3 84 126-214 4-91 (101)
103 cd02993 PDI_a_APS_reductase PD 99.6 2.2E-14 4.8E-19 114.4 10.8 97 238-338 7-109 (109)
104 PTZ00062 glutaredoxin; Provisi 99.6 2.4E-14 5.1E-19 125.9 11.9 94 236-344 3-96 (204)
105 KOG0191 Thioredoxin/protein di 99.6 7E-15 1.5E-19 142.7 8.0 200 121-329 146-363 (383)
106 KOG0912 Thiol-disulfide isomer 99.6 3.4E-14 7.4E-19 127.9 11.6 194 126-341 2-207 (375)
107 cd02988 Phd_like_VIAF Phosduci 99.5 5.5E-14 1.2E-18 123.1 12.4 102 230-340 81-190 (192)
108 cd02947 TRX_family TRX family; 99.5 6.9E-14 1.5E-18 106.3 11.5 90 241-338 2-92 (93)
109 cd02952 TRP14_like Human TRX-r 99.5 4.7E-14 1E-18 113.6 10.6 101 235-337 5-117 (119)
110 TIGR00424 APS_reduc 5'-adenyly 99.5 3.9E-14 8.4E-19 138.5 11.4 87 118-206 350-439 (463)
111 cd02947 TRX_family TRX family; 99.5 3.5E-14 7.6E-19 107.9 7.8 83 128-215 1-83 (93)
112 cd03007 PDI_a_ERp29_N PDIa fam 99.5 5.1E-14 1.1E-18 112.5 8.8 84 125-213 6-100 (116)
113 cd02951 SoxW SoxW family; SoxW 99.5 6.2E-14 1.3E-18 114.4 8.6 87 127-215 3-106 (125)
114 PLN02309 5'-adenylylsulfate re 99.5 1E-13 2.2E-18 135.5 10.9 87 117-207 343-434 (457)
115 KOG0911 Glutaredoxin-related p 99.5 1.7E-13 3.7E-18 119.1 9.5 189 120-324 2-206 (227)
116 cd02959 ERp19 Endoplasmic reti 99.5 9.4E-14 2E-18 112.1 7.3 83 129-213 7-95 (117)
117 TIGR00411 redox_disulf_1 small 99.5 5.3E-13 1.1E-17 100.3 10.7 79 256-341 2-81 (82)
118 cd02992 PDI_a_QSOX PDIa family 99.5 1.6E-13 3.5E-18 110.3 8.1 87 238-329 7-96 (114)
119 KOG0190 Protein disulfide isom 99.5 1.9E-13 4E-18 133.1 9.2 107 232-346 26-136 (493)
120 cd02982 PDI_b'_family Protein 99.4 3.4E-13 7.4E-18 105.9 8.6 86 253-341 12-102 (103)
121 TIGR01130 ER_PDI_fam protein d 99.4 7E-13 1.5E-17 131.3 12.8 101 238-345 7-112 (462)
122 PTZ00102 disulphide isomerase; 99.4 7.9E-13 1.7E-17 131.8 13.1 105 233-346 34-142 (477)
123 KOG1731 FAD-dependent sulfhydr 99.4 3.9E-13 8.5E-18 130.6 9.9 212 117-346 37-273 (606)
124 TIGR00424 APS_reduc 5'-adenyly 99.4 9.7E-13 2.1E-17 128.7 12.5 105 233-341 353-462 (463)
125 cd02959 ERp19 Endoplasmic reti 99.4 1.8E-13 3.9E-18 110.5 5.6 99 241-341 7-112 (117)
126 PRK00293 dipZ thiol:disulfide 99.4 9.4E-13 2E-17 133.5 12.0 110 232-342 453-570 (571)
127 TIGR03143 AhpF_homolog putativ 99.4 1.1E-11 2.5E-16 125.8 19.7 200 121-338 348-554 (555)
128 PHA02125 thioredoxin-like prot 99.4 4.8E-13 1E-17 99.3 7.1 63 143-216 2-64 (75)
129 PRK00293 dipZ thiol:disulfide 99.4 9.3E-13 2E-17 133.5 11.5 96 118-213 451-555 (571)
130 TIGR02187 GlrX_arch Glutaredox 99.4 2E-12 4.3E-17 115.6 12.0 89 253-344 19-113 (215)
131 PLN02309 5'-adenylylsulfate re 99.4 1.7E-12 3.8E-17 126.9 12.4 104 233-341 347-456 (457)
132 KOG4277 Uncharacterized conser 99.4 8.3E-13 1.8E-17 118.8 7.6 100 240-343 31-133 (468)
133 cd03007 PDI_a_ERp29_N PDIa fam 99.4 2.2E-12 4.7E-17 103.1 8.6 96 238-341 7-115 (116)
134 PF13098 Thioredoxin_2: Thiore 99.4 2E-12 4.3E-17 103.2 8.0 87 252-338 4-112 (112)
135 PHA02125 thioredoxin-like prot 99.4 5.8E-12 1.2E-16 93.4 9.7 70 257-338 2-73 (75)
136 cd03008 TryX_like_RdCVF Trypar 99.3 5E-12 1.1E-16 105.6 9.4 76 134-209 20-127 (146)
137 cd02982 PDI_b'_family Protein 99.3 2.9E-12 6.3E-17 100.6 7.3 68 139-209 12-84 (103)
138 cd03009 TryX_like_TryX_NRX Try 99.3 9.4E-12 2E-16 102.3 9.4 74 137-210 16-115 (131)
139 PRK15412 thiol:disulfide inter 99.3 2.8E-11 6.1E-16 105.7 11.8 88 252-342 67-176 (185)
140 cd02964 TryX_like_family Trypa 99.3 1.4E-11 3E-16 101.6 9.3 76 136-211 14-116 (132)
141 TIGR00411 redox_disulf_1 small 99.3 8.1E-12 1.8E-16 93.8 6.9 65 142-213 2-67 (82)
142 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.3E-11 2.8E-16 100.8 8.6 78 138-216 24-122 (127)
143 TIGR00412 redox_disulf_2 small 99.3 2.5E-11 5.5E-16 90.2 9.4 72 257-338 2-75 (76)
144 KOG0912 Thiol-disulfide isomer 99.3 8.6E-12 1.9E-16 112.6 8.0 99 239-344 3-108 (375)
145 PF13905 Thioredoxin_8: Thiore 99.3 3.7E-11 8E-16 92.9 9.6 68 139-206 1-94 (95)
146 cd02955 SSP411 TRX domain, SSP 99.3 8.2E-11 1.8E-15 95.7 12.0 78 252-329 14-100 (124)
147 PRK14018 trifunctional thiored 99.3 3.8E-11 8.2E-16 119.1 12.0 90 252-341 55-172 (521)
148 cd02973 TRX_GRX_like Thioredox 99.3 1.4E-11 3E-16 89.1 6.6 59 143-206 3-61 (67)
149 TIGR00385 dsbE periplasmic pro 99.3 4.8E-11 1E-15 103.0 11.2 89 252-343 62-172 (173)
150 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 2.5E-11 5.4E-16 93.0 8.2 74 131-209 4-77 (89)
151 cd03010 TlpA_like_DsbE TlpA-li 99.3 2.8E-11 6.1E-16 98.8 9.0 81 252-334 24-126 (127)
152 cd02955 SSP411 TRX domain, SSP 99.3 3.7E-11 8E-16 97.7 9.5 87 126-214 4-100 (124)
153 TIGR00412 redox_disulf_2 small 99.2 1.2E-11 2.7E-16 91.9 6.1 62 143-214 2-64 (76)
154 cd02958 UAS UAS family; UAS is 99.2 1.1E-10 2.3E-15 93.8 11.5 101 241-342 5-111 (114)
155 cd03008 TryX_like_RdCVF Trypar 99.2 6.3E-11 1.4E-15 98.9 10.1 74 252-325 24-128 (146)
156 KOG1672 ATP binding protein [P 99.2 1.6E-11 3.5E-16 104.2 6.3 99 111-214 58-156 (211)
157 TIGR02740 TraF-like TraF-like 99.2 3E-11 6.5E-16 111.5 8.3 77 132-209 159-244 (271)
158 TIGR02738 TrbB type-F conjugat 99.2 1.4E-10 3E-15 97.9 11.4 88 253-342 50-153 (153)
159 TIGR02740 TraF-like TraF-like 99.2 1.9E-10 4.2E-15 106.1 12.9 90 252-343 165-265 (271)
160 PRK11509 hydrogenase-1 operon 99.2 3.8E-10 8.2E-15 92.0 13.0 100 240-346 25-128 (132)
161 PF13905 Thioredoxin_8: Thiore 99.2 1.4E-10 3E-15 89.7 9.9 70 253-322 1-95 (95)
162 PRK03147 thiol-disulfide oxido 99.2 4.3E-10 9.2E-15 96.7 12.4 91 252-342 60-172 (173)
163 PRK15412 thiol:disulfide inter 99.2 7.4E-11 1.6E-15 103.0 7.7 75 138-214 67-162 (185)
164 cd03009 TryX_like_TryX_NRX Try 99.2 2E-10 4.3E-15 94.3 9.6 74 252-325 17-115 (131)
165 cd02964 TryX_like_family Trypa 99.2 2.2E-10 4.7E-15 94.4 9.5 74 252-325 16-115 (132)
166 PF13098 Thioredoxin_2: Thiore 99.1 7.9E-11 1.7E-15 93.9 6.4 79 137-215 3-103 (112)
167 PRK13728 conjugal transfer pro 99.1 4E-10 8.7E-15 97.0 11.1 87 257-345 73-174 (181)
168 PRK14018 trifunctional thiored 99.1 1E-10 2.2E-15 116.1 8.4 83 138-220 55-166 (521)
169 PTZ00056 glutathione peroxidas 99.1 4.3E-10 9.4E-15 99.2 11.2 92 252-343 38-179 (199)
170 cd02966 TlpA_like_family TlpA- 99.1 2.2E-10 4.7E-15 90.4 8.5 76 138-213 18-116 (116)
171 TIGR02738 TrbB type-F conjugat 99.1 1.7E-10 3.7E-15 97.3 8.0 74 139-213 50-138 (153)
172 cd03012 TlpA_like_DipZ_like Tl 99.1 2.3E-10 5E-15 93.4 8.5 76 138-213 22-124 (126)
173 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 7.2E-10 1.6E-14 84.9 10.4 76 252-335 11-87 (89)
174 cd02973 TRX_GRX_like Thioredox 99.1 3.9E-10 8.5E-15 81.4 8.5 62 256-323 2-63 (67)
175 PLN02919 haloacid dehalogenase 99.1 4.9E-10 1.1E-14 121.1 12.3 92 252-343 419-537 (1057)
176 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 2.1E-10 4.5E-15 93.0 6.9 74 138-214 19-112 (123)
177 COG4232 Thiol:disulfide interc 99.1 4.9E-10 1.1E-14 110.5 10.6 93 117-209 451-549 (569)
178 TIGR00385 dsbE periplasmic pro 99.1 2.8E-10 6E-15 98.3 7.2 74 138-213 62-156 (173)
179 PLN02399 phospholipid hydroper 99.1 1.3E-09 2.8E-14 98.2 11.6 92 252-343 98-235 (236)
180 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 8E-10 1.7E-14 89.5 9.4 84 252-337 19-121 (123)
181 KOG0914 Thioredoxin-like prote 99.1 2.8E-10 6E-15 98.3 6.4 97 114-213 119-223 (265)
182 COG4232 Thiol:disulfide interc 99.1 6.9E-10 1.5E-14 109.4 9.9 106 234-342 457-568 (569)
183 cd02967 mauD Methylamine utili 99.1 1E-09 2.2E-14 87.6 9.2 73 253-325 21-111 (114)
184 cd02967 mauD Methylamine utili 99.0 6.8E-10 1.5E-14 88.7 7.7 62 139-200 21-83 (114)
185 PRK03147 thiol-disulfide oxido 99.0 1.4E-09 3E-14 93.5 9.2 77 138-214 60-158 (173)
186 smart00594 UAS UAS domain. 99.0 3.2E-09 7E-14 86.3 10.7 97 241-338 15-121 (122)
187 cd02966 TlpA_like_family TlpA- 99.0 2.3E-09 5.1E-14 84.4 9.7 77 252-328 18-116 (116)
188 PF08534 Redoxin: Redoxin; In 99.0 2.8E-09 6.2E-14 89.0 10.6 78 252-329 27-134 (146)
189 cd03012 TlpA_like_DipZ_like Tl 99.0 2.3E-09 5E-14 87.5 9.7 78 252-329 22-125 (126)
190 PLN02919 haloacid dehalogenase 99.0 8.1E-10 1.7E-14 119.4 8.8 77 138-214 419-522 (1057)
191 cd02960 AGR Anterior Gradient 99.0 1E-09 2.2E-14 89.5 7.2 88 238-329 8-99 (130)
192 PF13848 Thioredoxin_6: Thiore 99.0 1.7E-08 3.6E-13 87.4 15.2 167 157-340 8-184 (184)
193 TIGR02540 gpx7 putative glutat 99.0 5.4E-09 1.2E-13 88.3 11.6 90 252-341 21-152 (153)
194 PF13899 Thioredoxin_7: Thiore 99.0 1.6E-09 3.4E-14 81.7 7.3 71 129-203 5-81 (82)
195 PF08534 Redoxin: Redoxin; In 99.0 1.3E-09 2.8E-14 91.1 7.1 80 137-216 26-136 (146)
196 cd02960 AGR Anterior Gradient 98.9 1.7E-09 3.6E-14 88.2 6.6 82 128-215 10-100 (130)
197 PTZ00056 glutathione peroxidas 98.9 3.1E-09 6.6E-14 93.9 8.5 60 138-198 38-107 (199)
198 cd00340 GSH_Peroxidase Glutath 98.9 5.5E-09 1.2E-13 88.2 9.4 85 252-337 21-151 (152)
199 TIGR02661 MauD methylamine deh 98.9 6.7E-09 1.5E-13 91.0 10.2 88 252-341 73-178 (189)
200 PLN02399 phospholipid hydroper 98.9 4.2E-09 9E-14 94.9 9.0 63 135-198 95-168 (236)
201 PF02114 Phosducin: Phosducin; 98.9 2.1E-09 4.5E-14 98.6 6.8 95 116-214 122-217 (265)
202 TIGR01626 ytfJ_HI0045 conserve 98.9 6.4E-09 1.4E-13 90.0 9.3 83 252-337 58-175 (184)
203 PRK15317 alkyl hydroperoxide r 98.9 6.4E-08 1.4E-12 97.7 17.8 186 127-342 7-198 (517)
204 cd02958 UAS UAS family; UAS is 98.9 6.2E-09 1.3E-13 83.5 8.1 85 129-214 5-97 (114)
205 PRK13728 conjugal transfer pro 98.9 6.5E-09 1.4E-13 89.5 8.1 71 143-214 73-157 (181)
206 PLN02412 probable glutathione 98.9 1.4E-08 3.1E-13 87.1 10.1 92 252-343 28-165 (167)
207 cd00340 GSH_Peroxidase Glutath 98.9 6.3E-09 1.4E-13 87.9 7.6 60 138-199 21-91 (152)
208 TIGR03140 AhpF alkyl hydropero 98.8 1.7E-07 3.7E-12 94.6 18.2 186 127-341 7-198 (515)
209 PF13899 Thioredoxin_7: Thiore 98.8 9.7E-09 2.1E-13 77.4 6.4 74 241-318 5-81 (82)
210 COG0526 TrxA Thiol-disulfide i 98.8 1.4E-08 3.1E-13 79.5 7.5 72 139-213 32-107 (127)
211 PRK11509 hydrogenase-1 operon 98.8 1.4E-08 3E-13 82.9 7.5 83 128-215 25-111 (132)
212 TIGR02661 MauD methylamine deh 98.8 1.4E-08 3E-13 89.0 7.7 71 138-209 73-161 (189)
213 KOG0914 Thioredoxin-like prote 98.8 8.9E-09 1.9E-13 89.1 5.9 87 236-327 129-222 (265)
214 TIGR02540 gpx7 putative glutat 98.8 1.8E-08 3.9E-13 85.1 7.1 63 136-199 19-92 (153)
215 PF02114 Phosducin: Phosducin; 98.7 4.9E-08 1.1E-12 89.5 9.5 105 231-341 125-237 (265)
216 PTZ00256 glutathione peroxidas 98.7 1.1E-07 2.4E-12 82.9 11.1 91 253-343 40-182 (183)
217 TIGR02196 GlrX_YruB Glutaredox 98.7 8E-08 1.7E-12 69.9 8.5 71 257-338 2-73 (74)
218 TIGR01626 ytfJ_HI0045 conserve 98.7 2.6E-08 5.6E-13 86.3 6.5 75 138-214 58-166 (184)
219 COG0526 TrxA Thiol-disulfide i 98.7 6.5E-08 1.4E-12 75.7 8.4 85 253-340 32-122 (127)
220 KOG2501 Thioredoxin, nucleored 98.7 3.5E-08 7.5E-13 82.2 6.4 72 138-209 32-130 (157)
221 KOG1731 FAD-dependent sulfhydr 98.7 1.4E-08 3.1E-13 99.3 4.7 84 231-319 39-125 (606)
222 TIGR02196 GlrX_YruB Glutaredox 98.7 3.9E-08 8.5E-13 71.5 6.0 67 143-219 2-69 (74)
223 cd02969 PRX_like1 Peroxiredoxi 98.7 2.7E-07 5.8E-12 79.4 11.6 93 252-344 24-154 (171)
224 KOG2501 Thioredoxin, nucleored 98.7 9.1E-08 2E-12 79.7 7.7 73 252-324 32-130 (157)
225 KOG1672 ATP binding protein [P 98.6 9.1E-08 2E-12 81.6 7.8 95 227-329 62-156 (211)
226 COG2143 Thioredoxin-related pr 98.6 5.3E-07 1.1E-11 74.3 11.6 88 252-339 41-146 (182)
227 smart00594 UAS UAS domain. 98.6 1.7E-07 3.7E-12 76.1 8.7 73 128-203 14-94 (122)
228 cd03017 PRX_BCP Peroxiredoxin 98.6 2.2E-07 4.9E-12 76.7 9.0 87 252-338 22-139 (140)
229 PF06110 DUF953: Eukaryotic pr 98.6 3.2E-07 7E-12 73.7 9.1 89 238-329 4-105 (119)
230 cd01659 TRX_superfamily Thiore 98.6 2.6E-07 5.7E-12 64.0 7.7 63 143-205 1-63 (69)
231 PF01216 Calsequestrin: Calseq 98.6 2.6E-06 5.7E-11 79.0 15.8 209 115-344 30-249 (383)
232 cd02991 UAS_ETEA UAS family, E 98.6 1E-06 2.3E-11 70.8 11.5 101 241-343 5-114 (116)
233 KOG3425 Uncharacterized conser 98.5 3.5E-07 7.6E-12 71.9 7.4 97 237-336 10-121 (128)
234 PF14595 Thioredoxin_9: Thiore 98.5 2.9E-07 6.3E-12 75.4 7.1 84 128-214 30-117 (129)
235 TIGR02200 GlrX_actino Glutared 98.5 4.4E-07 9.4E-12 66.9 6.9 61 143-209 2-64 (77)
236 PRK10606 btuE putative glutath 98.5 9.4E-07 2E-11 76.8 10.0 90 252-342 24-181 (183)
237 cd03014 PRX_Atyp2cys Peroxired 98.5 4.7E-07 1E-11 75.3 7.8 60 138-197 25-85 (143)
238 PRK00522 tpx lipid hydroperoxi 98.5 5.1E-07 1.1E-11 77.5 8.0 60 138-197 43-103 (167)
239 PTZ00256 glutathione peroxidas 98.5 5.9E-07 1.3E-11 78.3 8.3 69 138-207 39-120 (183)
240 cd02969 PRX_like1 Peroxiredoxi 98.5 6E-07 1.3E-11 77.2 8.2 72 138-209 24-124 (171)
241 PF06110 DUF953: Eukaryotic pr 98.4 1.1E-06 2.4E-11 70.6 8.6 84 124-207 2-101 (119)
242 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 1.4E-06 3E-11 70.3 9.4 74 252-325 24-124 (124)
243 cd03017 PRX_BCP Peroxiredoxin 98.4 4.4E-07 9.4E-12 75.0 6.5 55 138-192 22-79 (140)
244 cd03014 PRX_Atyp2cys Peroxired 98.4 1.4E-06 3.1E-11 72.3 9.4 86 252-338 25-141 (143)
245 cd01659 TRX_superfamily Thiore 98.4 1.4E-06 3E-11 60.2 7.6 63 257-320 1-63 (69)
246 PLN02412 probable glutathione 98.4 7E-07 1.5E-11 76.6 7.1 62 138-200 28-100 (167)
247 PF14595 Thioredoxin_9: Thiore 98.4 1E-06 2.2E-11 72.2 7.1 90 242-338 32-125 (129)
248 TIGR02200 GlrX_actino Glutared 98.4 2.6E-06 5.7E-11 62.6 8.6 73 257-339 2-76 (77)
249 PF13192 Thioredoxin_3: Thiore 98.4 4.3E-06 9.3E-11 61.9 9.7 71 259-339 4-76 (76)
250 cd02970 PRX_like2 Peroxiredoxi 98.4 1.8E-06 4E-11 71.8 8.4 46 253-298 24-70 (149)
251 KOG3414 Component of the U4/U6 98.4 6.4E-06 1.4E-10 65.4 10.7 103 234-341 6-119 (142)
252 cd03015 PRX_Typ2cys Peroxiredo 98.3 2.9E-06 6.2E-11 73.1 9.5 91 252-342 28-157 (173)
253 PF03190 Thioredox_DsbH: Prote 98.3 1.8E-06 4E-11 72.9 7.7 71 252-325 36-118 (163)
254 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 1.8E-06 4E-11 69.6 7.4 55 138-192 24-81 (124)
255 PRK00522 tpx lipid hydroperoxi 98.3 5E-06 1.1E-10 71.3 10.4 77 252-329 43-150 (167)
256 PRK10606 btuE putative glutath 98.3 1.3E-06 2.8E-11 75.9 6.8 71 135-207 21-103 (183)
257 KOG3414 Component of the U4/U6 98.3 9.6E-06 2.1E-10 64.4 10.6 85 122-209 6-91 (142)
258 PRK09437 bcp thioredoxin-depen 98.3 4.9E-06 1.1E-10 70.1 9.8 84 252-335 29-146 (154)
259 PF13728 TraF: F plasmid trans 98.3 8.4E-06 1.8E-10 72.8 11.7 94 241-338 110-214 (215)
260 PRK11200 grxA glutaredoxin 1; 98.3 7.3E-06 1.6E-10 62.0 9.5 81 256-344 2-85 (85)
261 cd02970 PRX_like2 Peroxiredoxi 98.3 3.2E-06 7E-11 70.3 8.0 55 139-193 24-80 (149)
262 cd02968 SCO SCO (an acronym fo 98.3 2.4E-06 5.1E-11 70.8 7.1 55 138-192 21-85 (142)
263 TIGR03137 AhpC peroxiredoxin. 98.3 7.3E-06 1.6E-10 71.6 10.4 90 252-341 30-155 (187)
264 cd03018 PRX_AhpE_like Peroxire 98.3 7.6E-06 1.6E-10 68.3 9.9 85 254-338 29-147 (149)
265 cd03018 PRX_AhpE_like Peroxire 98.3 2.6E-06 5.7E-11 71.1 7.0 56 138-193 26-85 (149)
266 TIGR02180 GRX_euk Glutaredoxin 98.3 6.1E-06 1.3E-10 61.8 8.3 63 257-323 1-65 (84)
267 PF02966 DIM1: Mitosis protein 98.2 1.9E-05 4.2E-10 63.6 11.2 102 234-341 3-116 (133)
268 TIGR02180 GRX_euk Glutaredoxin 98.2 3E-06 6.6E-11 63.5 6.3 63 143-208 1-65 (84)
269 cd02971 PRX_family Peroxiredox 98.2 3.8E-06 8.3E-11 69.2 7.3 54 138-191 21-77 (140)
270 cd02968 SCO SCO (an acronym fo 98.2 6.8E-06 1.5E-10 68.0 8.2 44 252-295 21-69 (142)
271 cd02971 PRX_family Peroxiredox 98.2 9.8E-06 2.1E-10 66.8 9.0 78 252-329 21-129 (140)
272 PRK11200 grxA glutaredoxin 1; 98.2 6.8E-06 1.5E-10 62.2 7.3 66 142-209 2-70 (85)
273 PF11009 DUF2847: Protein of u 98.2 3.5E-05 7.6E-10 60.3 10.8 98 235-334 3-104 (105)
274 KOG0911 Glutaredoxin-related p 98.1 1.3E-06 2.9E-11 76.5 3.1 100 233-342 3-102 (227)
275 PF11009 DUF2847: Protein of u 98.1 2.2E-05 4.7E-10 61.4 9.4 89 122-210 2-93 (105)
276 KOG3425 Uncharacterized conser 98.1 6.8E-06 1.5E-10 64.8 6.5 80 125-204 10-104 (128)
277 PRK09437 bcp thioredoxin-depen 98.1 5.6E-06 1.2E-10 69.8 6.4 56 138-193 29-87 (154)
278 PRK10382 alkyl hydroperoxide r 98.1 2.7E-05 6E-10 68.0 10.7 91 252-342 30-156 (187)
279 PF13728 TraF: F plasmid trans 98.1 1.7E-05 3.6E-10 70.9 9.3 77 128-205 109-193 (215)
280 TIGR02739 TraF type-F conjugat 98.1 4.3E-05 9.4E-10 69.6 11.9 97 242-342 141-248 (256)
281 cd03015 PRX_Typ2cys Peroxiredo 98.0 1.1E-05 2.3E-10 69.6 6.7 71 138-208 28-105 (173)
282 PRK13190 putative peroxiredoxi 98.0 4.4E-05 9.6E-10 67.5 10.3 90 253-342 27-154 (202)
283 cd02976 NrdH NrdH-redoxin (Nrd 98.0 4.4E-05 9.6E-10 55.0 8.5 71 257-338 2-73 (73)
284 PF00462 Glutaredoxin: Glutare 98.0 3.7E-05 8.1E-10 53.9 7.7 57 143-206 1-58 (60)
285 TIGR02183 GRXA Glutaredoxin, G 98.0 4.5E-05 9.8E-10 57.8 8.6 80 257-344 2-84 (86)
286 PRK15000 peroxidase; Provision 98.0 6.3E-05 1.4E-09 66.4 10.7 89 253-341 34-161 (200)
287 PF02966 DIM1: Mitosis protein 97.9 0.00022 4.8E-09 57.6 12.0 84 122-209 3-88 (133)
288 TIGR03137 AhpC peroxiredoxin. 97.9 2.1E-05 4.5E-10 68.7 6.7 52 138-189 30-84 (187)
289 PF00462 Glutaredoxin: Glutare 97.9 5.2E-05 1.1E-09 53.2 7.5 59 257-323 1-60 (60)
290 cd02976 NrdH NrdH-redoxin (Nrd 97.9 3.2E-05 6.9E-10 55.8 6.2 54 143-201 2-56 (73)
291 PRK13703 conjugal pilus assemb 97.9 0.00013 2.8E-09 66.2 11.2 91 252-342 142-241 (248)
292 TIGR02190 GlrX-dom Glutaredoxi 97.9 4.3E-05 9.2E-10 57.0 6.7 64 138-208 5-68 (79)
293 cd02991 UAS_ETEA UAS family, E 97.9 8.1E-05 1.8E-09 59.8 8.5 81 130-213 6-98 (116)
294 cd03016 PRX_1cys Peroxiredoxin 97.9 0.00014 2.9E-09 64.5 10.6 88 255-342 28-154 (203)
295 PF13192 Thioredoxin_3: Thiore 97.9 7.9E-05 1.7E-09 55.1 7.6 57 145-208 4-60 (76)
296 TIGR02190 GlrX-dom Glutaredoxi 97.8 0.00013 2.8E-09 54.3 8.5 63 253-323 6-68 (79)
297 KOG3171 Conserved phosducin-li 97.8 5.2E-05 1.1E-09 65.8 7.0 109 227-341 134-250 (273)
298 PRK10329 glutaredoxin-like pro 97.8 0.00021 4.6E-09 53.5 9.5 75 257-342 3-77 (81)
299 COG2143 Thioredoxin-related pr 97.8 8.3E-05 1.8E-09 61.6 7.7 80 138-217 41-138 (182)
300 PF03190 Thioredox_DsbH: Prote 97.8 0.00015 3.3E-09 61.3 8.9 80 126-210 26-118 (163)
301 KOG3170 Conserved phosducin-li 97.8 0.00013 2.8E-09 62.8 8.3 92 115-213 87-179 (240)
302 TIGR02183 GRXA Glutaredoxin, G 97.8 8.8E-05 1.9E-09 56.3 6.6 64 143-208 2-68 (86)
303 TIGR02194 GlrX_NrdH Glutaredox 97.8 0.00017 3.8E-09 52.5 8.0 69 258-336 2-70 (72)
304 TIGR02739 TraF type-F conjugat 97.8 0.00014 3.1E-09 66.3 9.0 75 129-204 140-222 (256)
305 KOG3171 Conserved phosducin-li 97.8 0.0001 2.2E-09 64.1 7.6 95 115-213 134-229 (273)
306 PRK10382 alkyl hydroperoxide r 97.8 8.2E-05 1.8E-09 65.0 7.2 76 138-213 30-109 (187)
307 PRK13191 putative peroxiredoxi 97.7 0.00022 4.8E-09 63.7 9.9 90 253-342 33-161 (215)
308 KOG0913 Thiol-disulfide isomer 97.7 7.2E-06 1.6E-10 72.2 0.3 96 236-341 28-125 (248)
309 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00011 2.4E-09 54.7 6.7 61 143-208 2-64 (82)
310 PRK10877 protein disulfide iso 97.7 0.00028 6.2E-09 63.8 10.4 83 252-341 106-230 (232)
311 PTZ00137 2-Cys peroxiredoxin; 97.7 0.00036 7.9E-09 63.9 10.8 90 253-342 98-225 (261)
312 cd02066 GRX_family Glutaredoxi 97.7 0.00014 3.1E-09 52.0 6.6 60 143-209 2-62 (72)
313 PTZ00253 tryparedoxin peroxida 97.7 0.00025 5.5E-09 62.5 9.4 90 252-341 35-163 (199)
314 PRK13599 putative peroxiredoxi 97.6 0.00051 1.1E-08 61.4 10.5 89 253-341 28-155 (215)
315 cd03029 GRX_hybridPRX5 Glutare 97.6 0.00054 1.2E-08 49.8 8.9 69 257-338 3-71 (72)
316 PRK13189 peroxiredoxin; Provis 97.6 0.00054 1.2E-08 61.5 10.5 90 253-342 35-163 (222)
317 cd02983 P5_C P5 family, C-term 97.6 0.0015 3.2E-08 53.6 12.0 108 232-346 3-119 (130)
318 PRK10329 glutaredoxin-like pro 97.6 0.00034 7.4E-09 52.4 7.5 68 143-220 3-70 (81)
319 KOG0913 Thiol-disulfide isomer 97.6 8.5E-06 1.8E-10 71.8 -1.5 87 120-215 25-113 (248)
320 PF01216 Calsequestrin: Calseq 97.6 0.0011 2.5E-08 61.8 12.3 104 232-344 35-146 (383)
321 PHA03050 glutaredoxin; Provisi 97.6 0.00032 7E-09 55.6 7.5 64 143-208 15-80 (108)
322 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00028 6E-09 55.5 6.6 86 239-332 16-105 (107)
323 cd03419 GRX_GRXh_1_2_like Glut 97.5 0.00061 1.3E-08 50.6 8.1 61 257-323 2-64 (82)
324 PRK15000 peroxidase; Provision 97.5 0.00026 5.7E-09 62.5 7.0 76 138-213 33-115 (200)
325 cd03016 PRX_1cys Peroxiredoxin 97.5 0.00032 6.9E-09 62.1 7.4 42 141-182 28-71 (203)
326 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.0007 1.5E-08 59.5 9.3 79 252-338 76-197 (197)
327 cd02066 GRX_family Glutaredoxi 97.5 0.00058 1.3E-08 48.8 7.3 60 257-324 2-62 (72)
328 TIGR02194 GlrX_NrdH Glutaredox 97.5 0.0005 1.1E-08 50.1 6.9 69 143-220 1-69 (72)
329 TIGR03143 AhpF_homolog putativ 97.5 0.00043 9.4E-09 70.6 8.6 65 139-208 475-540 (555)
330 PRK15317 alkyl hydroperoxide r 97.4 0.00048 1E-08 69.7 8.7 77 127-208 104-180 (517)
331 cd02981 PDI_b_family Protein D 97.4 0.00085 1.8E-08 51.6 8.2 92 235-340 3-96 (97)
332 PTZ00253 tryparedoxin peroxida 97.4 0.00039 8.5E-09 61.3 7.1 45 138-182 35-82 (199)
333 cd03029 GRX_hybridPRX5 Glutare 97.4 0.00055 1.2E-08 49.8 6.7 59 143-208 3-61 (72)
334 TIGR02189 GlrX-like_plant Glut 97.4 0.00034 7.4E-09 54.5 5.6 59 257-323 10-72 (99)
335 PRK13703 conjugal pilus assemb 97.4 0.00071 1.5E-08 61.4 7.9 75 130-204 134-215 (248)
336 TIGR02189 GlrX-like_plant Glut 97.4 0.00055 1.2E-08 53.3 6.2 59 143-208 10-72 (99)
337 PRK13190 putative peroxiredoxi 97.3 0.00061 1.3E-08 60.3 6.7 56 138-193 26-88 (202)
338 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.0015 3.3E-08 47.6 7.6 59 143-208 2-62 (75)
339 PRK11657 dsbG disulfide isomer 97.2 0.0023 5E-08 58.6 10.0 85 252-339 116-249 (251)
340 PF07449 HyaE: Hydrogenase-1 e 97.2 0.00072 1.6E-08 53.2 5.7 86 122-214 12-101 (107)
341 TIGR00365 monothiol glutaredox 97.2 0.0047 1E-07 47.9 10.1 71 240-323 3-78 (97)
342 cd03418 GRX_GRXb_1_3_like Glut 97.2 0.0022 4.7E-08 46.8 7.9 59 257-323 2-62 (75)
343 cd03023 DsbA_Com1_like DsbA fa 97.2 0.0036 7.7E-08 51.9 10.0 39 252-291 4-42 (154)
344 cd03072 PDI_b'_ERp44 PDIb' fam 97.2 0.0033 7.1E-08 50.1 9.2 96 239-343 6-109 (111)
345 TIGR02181 GRX_bact Glutaredoxi 97.2 0.0024 5.3E-08 47.2 7.9 59 257-323 1-60 (79)
346 COG0695 GrxC Glutaredoxin and 97.2 0.003 6.6E-08 47.1 8.3 69 257-336 3-75 (80)
347 cd03027 GRX_DEP Glutaredoxin ( 97.2 0.0026 5.7E-08 46.3 7.7 60 257-324 3-63 (73)
348 PTZ00137 2-Cys peroxiredoxin; 97.2 0.0012 2.7E-08 60.5 7.1 51 138-188 97-150 (261)
349 PHA03050 glutaredoxin; Provisi 97.1 0.0016 3.5E-08 51.6 6.7 63 257-324 15-81 (108)
350 PF13462 Thioredoxin_4: Thiore 97.1 0.0095 2.1E-07 50.0 11.9 84 252-340 11-162 (162)
351 TIGR03140 AhpF alkyl hydropero 97.1 0.0019 4.2E-08 65.3 8.6 75 128-207 106-180 (515)
352 PRK13599 putative peroxiredoxi 97.1 0.0013 2.9E-08 58.7 6.6 51 138-188 27-80 (215)
353 COG0695 GrxC Glutaredoxin and 97.1 0.0022 4.8E-08 47.9 6.7 54 143-201 3-59 (80)
354 TIGR02181 GRX_bact Glutaredoxi 97.1 0.002 4.3E-08 47.7 6.4 59 143-208 1-60 (79)
355 cd03027 GRX_DEP Glutaredoxin ( 97.0 0.0035 7.5E-08 45.7 7.3 59 143-208 3-62 (73)
356 cd03028 GRX_PICOT_like Glutare 97.0 0.006 1.3E-07 46.5 8.8 63 253-323 7-74 (90)
357 PF05768 DUF836: Glutaredoxin- 97.0 0.0018 3.9E-08 48.4 5.5 77 257-339 2-81 (81)
358 PRK13191 putative peroxiredoxi 97.0 0.002 4.3E-08 57.6 6.6 50 138-187 32-84 (215)
359 PRK10638 glutaredoxin 3; Provi 96.9 0.0038 8.1E-08 46.8 7.0 60 143-209 4-64 (83)
360 PF13848 Thioredoxin_6: Thiore 96.9 0.0075 1.6E-07 51.8 9.9 80 118-203 76-159 (184)
361 PRK10877 protein disulfide iso 96.9 0.0031 6.7E-08 57.0 7.7 68 138-208 106-214 (232)
362 KOG3170 Conserved phosducin-li 96.9 0.0031 6.7E-08 54.5 7.1 101 231-340 91-199 (240)
363 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0041 8.8E-08 54.7 8.2 66 139-208 77-184 (197)
364 PRK10824 glutaredoxin-4; Provi 96.9 0.003 6.4E-08 50.6 6.5 72 240-324 6-82 (115)
365 cd03028 GRX_PICOT_like Glutare 96.9 0.0043 9.3E-08 47.3 7.1 63 139-208 7-74 (90)
366 PRK10638 glutaredoxin 3; Provi 96.9 0.0062 1.4E-07 45.6 7.6 60 257-324 4-64 (83)
367 cd02972 DsbA_family DsbA famil 96.8 0.006 1.3E-07 46.0 7.2 62 257-318 1-91 (98)
368 TIGR00365 monothiol glutaredox 96.8 0.011 2.3E-07 45.9 8.6 71 128-208 3-78 (97)
369 cd03073 PDI_b'_ERp72_ERp57 PDI 96.7 0.012 2.5E-07 46.9 8.6 73 266-341 31-110 (111)
370 cd03019 DsbA_DsbA DsbA family, 96.7 0.011 2.4E-07 50.5 9.1 41 252-292 14-54 (178)
371 KOG2603 Oligosaccharyltransfer 96.7 0.012 2.5E-07 54.4 9.5 112 229-345 38-169 (331)
372 PRK13189 peroxiredoxin; Provis 96.7 0.0038 8.3E-08 56.0 6.3 51 138-188 34-87 (222)
373 cd02972 DsbA_family DsbA famil 96.7 0.0074 1.6E-07 45.5 7.1 61 143-203 1-91 (98)
374 cd02981 PDI_b_family Protein D 96.6 0.016 3.6E-07 44.3 8.3 73 121-205 1-74 (97)
375 cd03019 DsbA_DsbA DsbA family, 96.5 0.011 2.4E-07 50.5 7.9 37 138-174 14-51 (178)
376 PRK10824 glutaredoxin-4; Provi 96.4 0.015 3.2E-07 46.5 7.3 72 127-208 5-81 (115)
377 PRK10954 periplasmic protein d 96.4 0.024 5.3E-07 50.2 9.4 41 253-293 37-80 (207)
378 COG1225 Bcp Peroxiredoxin [Pos 96.4 0.03 6.6E-07 47.2 9.3 90 252-341 29-155 (157)
379 PRK10954 periplasmic protein d 96.4 0.012 2.7E-07 52.1 7.3 40 139-178 37-80 (207)
380 cd03067 PDI_b_PDIR_N PDIb fami 96.3 0.03 6.6E-07 43.1 8.1 87 121-211 3-95 (112)
381 cd03023 DsbA_Com1_like DsbA fa 96.3 0.011 2.3E-07 49.0 6.1 41 138-178 4-44 (154)
382 cd03067 PDI_b_PDIR_N PDIb fami 96.2 0.04 8.6E-07 42.5 8.3 99 235-339 5-109 (112)
383 PRK12759 bifunctional gluaredo 96.2 0.014 3.1E-07 57.3 7.5 59 143-208 4-71 (410)
384 cd03066 PDI_b_Calsequestrin_mi 96.2 0.052 1.1E-06 42.3 9.2 95 233-341 2-100 (102)
385 PRK11657 dsbG disulfide isomer 96.0 0.04 8.6E-07 50.4 9.0 76 139-215 117-239 (251)
386 COG1225 Bcp Peroxiredoxin [Pos 96.0 0.021 4.6E-07 48.1 6.5 61 134-194 25-88 (157)
387 COG1331 Highly conserved prote 95.9 0.018 4E-07 58.6 6.6 83 238-324 32-123 (667)
388 PF07912 ERp29_N: ERp29, N-ter 95.8 0.17 3.8E-06 40.5 10.5 101 239-345 11-122 (126)
389 cd03013 PRX5_like Peroxiredoxi 95.7 0.025 5.4E-07 47.7 5.7 72 140-213 31-107 (155)
390 PRK12759 bifunctional gluaredo 95.6 0.035 7.7E-07 54.5 7.5 59 257-323 4-71 (410)
391 cd03069 PDI_b_ERp57 PDIb famil 95.4 0.11 2.4E-06 40.6 8.2 93 234-341 3-103 (104)
392 KOG1752 Glutaredoxin and relat 95.3 0.094 2E-06 41.1 7.4 71 241-323 6-78 (104)
393 PF00837 T4_deiodinase: Iodoth 95.3 0.086 1.9E-06 47.3 8.0 90 252-341 101-236 (237)
394 PF05768 DUF836: Glutaredoxin- 95.3 0.065 1.4E-06 39.9 6.1 56 143-203 2-57 (81)
395 KOG2603 Oligosaccharyltransfer 95.1 0.087 1.9E-06 48.8 7.7 83 118-204 39-135 (331)
396 cd02983 P5_C P5 family, C-term 94.6 0.4 8.6E-06 39.2 9.7 82 119-205 2-91 (130)
397 cd03072 PDI_b'_ERp44 PDIb' fam 94.6 0.19 4.1E-06 39.9 7.6 72 126-204 5-82 (111)
398 KOG1752 Glutaredoxin and relat 94.6 0.097 2.1E-06 41.1 5.6 72 128-208 5-78 (104)
399 cd02990 UAS_FAF1 UAS family, F 94.5 1.2 2.6E-05 36.7 12.2 93 250-343 18-134 (136)
400 PF07912 ERp29_N: ERp29, N-ter 94.4 0.16 3.4E-06 40.8 6.4 79 122-205 7-93 (126)
401 cd03013 PRX5_like Peroxiredoxi 94.1 0.13 2.9E-06 43.3 5.9 44 254-297 31-77 (155)
402 COG0386 BtuE Glutathione perox 93.9 0.67 1.4E-05 38.8 9.5 91 252-343 24-161 (162)
403 COG1999 Uncharacterized protei 93.7 0.59 1.3E-05 41.4 9.5 92 252-343 66-205 (207)
404 cd03031 GRX_GRX_like Glutaredo 93.6 0.64 1.4E-05 38.9 9.1 60 257-324 2-72 (147)
405 PF13462 Thioredoxin_4: Thiore 93.2 0.24 5.3E-06 41.3 6.2 43 138-180 11-56 (162)
406 COG0278 Glutaredoxin-related p 93.1 0.42 9.1E-06 36.9 6.5 65 253-324 15-83 (105)
407 PF13743 Thioredoxin_5: Thiore 92.7 0.4 8.6E-06 41.4 6.8 33 259-291 2-34 (176)
408 cd03073 PDI_b'_ERp72_ERp57 PDI 92.3 0.78 1.7E-05 36.4 7.5 50 152-204 31-86 (111)
409 cd03031 GRX_GRX_like Glutaredo 92.0 0.77 1.7E-05 38.4 7.4 59 143-208 2-71 (147)
410 KOG2792 Putative cytochrome C 91.7 0.94 2E-05 41.1 8.0 91 252-342 138-275 (280)
411 cd03068 PDI_b_ERp72 PDIb famil 91.4 2.7 5.8E-05 33.0 9.6 95 233-340 2-106 (107)
412 cd03041 GST_N_2GST_N GST_N fam 91.1 2.9 6.2E-05 30.3 9.0 73 258-341 3-76 (77)
413 cd02974 AhpF_NTD_N Alkyl hydro 90.6 4.3 9.3E-05 31.1 9.7 85 239-341 7-93 (94)
414 cd03040 GST_N_mPGES2 GST_N fam 90.0 3.7 8.1E-05 29.5 8.8 74 257-343 2-77 (77)
415 cd02978 KaiB_like KaiB-like fa 89.9 1.1 2.3E-05 32.6 5.5 58 141-201 2-61 (72)
416 cd03066 PDI_b_Calsequestrin_mi 89.2 3.3 7.1E-05 32.0 8.3 73 121-204 2-75 (102)
417 cd02974 AhpF_NTD_N Alkyl hydro 89.0 4 8.6E-05 31.3 8.5 64 127-205 7-70 (94)
418 cd03035 ArsC_Yffb Arsenate Red 88.6 1 2.3E-05 35.3 5.1 45 143-192 1-49 (105)
419 PF13417 GST_N_3: Glutathione 88.5 7.1 0.00015 28.0 9.3 72 260-344 2-73 (75)
420 PF04592 SelP_N: Selenoprotein 88.4 0.76 1.6E-05 41.1 4.6 46 134-179 21-71 (238)
421 KOG2640 Thioredoxin [Function 88.3 0.18 4E-06 46.7 0.7 134 131-281 68-202 (319)
422 PF00837 T4_deiodinase: Iodoth 88.2 0.62 1.3E-05 41.9 4.0 63 116-180 79-144 (237)
423 cd03069 PDI_b_ERp57 PDIb famil 88.2 2.4 5.3E-05 32.9 7.0 71 121-204 2-73 (104)
424 KOG2507 Ubiquitin regulatory p 88.2 4.1 8.8E-05 39.5 9.5 96 244-341 10-110 (506)
425 cd03060 GST_N_Omega_like GST_N 88.1 2 4.3E-05 30.6 6.0 58 258-322 2-59 (71)
426 PF09673 TrbC_Ftype: Type-F co 87.8 3.1 6.8E-05 33.1 7.4 70 240-319 11-80 (113)
427 COG3634 AhpF Alkyl hydroperoxi 87.6 11 0.00023 36.2 11.8 173 139-340 18-196 (520)
428 cd03060 GST_N_Omega_like GST_N 87.6 2 4.3E-05 30.6 5.7 53 144-201 2-54 (71)
429 cd03041 GST_N_2GST_N GST_N fam 87.6 3.1 6.7E-05 30.2 6.9 53 144-201 3-56 (77)
430 cd03036 ArsC_like Arsenate Red 87.2 1.3 2.8E-05 35.0 4.9 53 144-201 2-55 (111)
431 PRK09301 circadian clock prote 86.5 1.9 4.1E-05 33.6 5.2 72 138-213 4-77 (103)
432 cd02977 ArsC_family Arsenate R 86.3 1.2 2.5E-05 34.7 4.2 33 143-180 1-33 (105)
433 TIGR02742 TrbC_Ftype type-F co 86.3 3.5 7.5E-05 33.7 7.0 89 240-339 12-112 (130)
434 COG4545 Glutaredoxin-related p 86.2 1.4 3E-05 32.1 4.0 59 258-323 5-76 (85)
435 cd02978 KaiB_like KaiB-like fa 86.2 3.1 6.7E-05 30.3 5.9 58 256-316 3-61 (72)
436 cd03036 ArsC_like Arsenate Red 85.6 0.51 1.1E-05 37.4 1.8 75 258-341 2-87 (111)
437 PF02630 SCO1-SenC: SCO1/SenC; 85.6 3.1 6.7E-05 35.6 6.8 44 252-295 51-98 (174)
438 TIGR02654 circ_KaiB circadian 85.5 2.4 5.3E-05 32.0 5.3 70 140-213 3-74 (87)
439 KOG1651 Glutathione peroxidase 85.5 7 0.00015 33.1 8.5 32 312-343 138-170 (171)
440 PHA03075 glutaredoxin-like pro 85.4 1.2 2.5E-05 35.3 3.6 36 254-293 2-37 (123)
441 cd03035 ArsC_Yffb Arsenate Red 85.3 1.2 2.6E-05 34.9 3.8 74 258-341 2-84 (105)
442 PF01323 DSBA: DSBA-like thior 85.1 1.8 3.8E-05 37.2 5.2 38 143-180 2-41 (193)
443 PF02630 SCO1-SenC: SCO1/SenC; 84.3 1.9 4.1E-05 37.0 5.0 53 138-190 51-108 (174)
444 PRK01655 spxA transcriptional 84.1 2.5 5.5E-05 34.5 5.4 34 143-181 2-35 (131)
445 PRK12559 transcriptional regul 83.0 2.9 6.3E-05 34.2 5.3 33 143-180 2-34 (131)
446 cd03037 GST_N_GRX2 GST_N famil 82.6 5.1 0.00011 28.3 5.9 56 259-322 3-58 (71)
447 COG0386 BtuE Glutathione perox 82.6 3.4 7.4E-05 34.6 5.4 65 134-200 20-95 (162)
448 cd02977 ArsC_family Arsenate R 81.5 1.8 4E-05 33.6 3.4 75 258-341 2-86 (105)
449 cd03068 PDI_b_ERp72 PDIb famil 81.0 14 0.00031 28.8 8.4 74 121-205 2-76 (107)
450 TIGR02654 circ_KaiB circadian 81.0 5.9 0.00013 29.9 5.8 71 255-329 4-75 (87)
451 PHA03075 glutaredoxin-like pro 80.7 2.8 6.1E-05 33.3 4.1 36 140-178 2-37 (123)
452 PF06491 Disulph_isomer: Disul 80.6 30 0.00064 28.2 13.2 104 232-341 17-131 (136)
453 PF09673 TrbC_Ftype: Type-F co 79.9 5.9 0.00013 31.5 5.9 71 127-204 10-80 (113)
454 cd00570 GST_N_family Glutathio 79.6 4.3 9.3E-05 27.6 4.6 53 145-201 3-55 (71)
455 PRK09301 circadian clock prote 79.5 6.7 0.00015 30.6 5.8 79 253-335 5-86 (103)
456 COG2761 FrnE Predicted dithiol 79.2 3.7 7.9E-05 36.8 4.9 40 301-344 175-215 (225)
457 PF06953 ArsD: Arsenical resis 79.1 14 0.0003 29.9 7.8 52 285-340 40-100 (123)
458 TIGR01617 arsC_related transcr 78.7 5 0.00011 31.9 5.2 33 144-181 2-34 (117)
459 cd03059 GST_N_SspA GST_N famil 78.7 7.2 0.00016 27.4 5.6 52 144-200 2-53 (73)
460 KOG2792 Putative cytochrome C 78.6 4.5 9.7E-05 36.8 5.3 42 138-179 138-187 (280)
461 cd03059 GST_N_SspA GST_N famil 78.6 20 0.00043 25.1 8.2 70 258-340 2-71 (73)
462 PF00255 GSHPx: Glutathione pe 78.1 5.7 0.00012 31.4 5.2 45 135-180 17-63 (108)
463 cd03032 ArsC_Spx Arsenate Redu 77.7 6.7 0.00014 31.1 5.6 33 143-180 2-34 (115)
464 COG1999 Uncharacterized protei 76.9 9.5 0.00021 33.7 6.9 66 138-203 66-138 (207)
465 PRK01655 spxA transcriptional 76.7 4.6 9.9E-05 32.9 4.5 35 257-297 2-36 (131)
466 cd00570 GST_N_family Glutathio 75.7 18 0.00039 24.3 7.0 58 259-323 3-60 (71)
467 COG1331 Highly conserved prote 75.6 6.9 0.00015 40.5 6.3 81 126-208 32-122 (667)
468 cd03051 GST_N_GTT2_like GST_N 75.4 6.4 0.00014 27.6 4.6 55 144-201 2-57 (74)
469 cd03040 GST_N_mPGES2 GST_N fam 74.1 19 0.00041 25.7 6.9 53 143-202 2-54 (77)
470 COG3531 Predicted protein-disu 74.0 5.9 0.00013 34.6 4.6 43 300-342 164-209 (212)
471 PRK13344 spxA transcriptional 73.7 10 0.00023 30.9 5.9 45 143-192 2-50 (132)
472 PF06053 DUF929: Domain of unk 73.2 12 0.00026 34.1 6.6 57 252-318 57-113 (249)
473 COG3019 Predicted metal-bindin 72.7 11 0.00024 31.0 5.6 47 140-194 25-71 (149)
474 TIGR02742 TrbC_Ftype type-F co 71.6 10 0.00022 31.0 5.3 21 186-206 62-82 (130)
475 TIGR01617 arsC_related transcr 71.0 7.5 0.00016 30.8 4.4 76 258-341 2-87 (117)
476 KOG2507 Ubiquitin regulatory p 70.5 12 0.00026 36.4 6.2 90 131-221 9-105 (506)
477 cd03045 GST_N_Delta_Epsilon GS 70.2 10 0.00022 26.8 4.6 55 144-201 2-57 (74)
478 COG3019 Predicted metal-bindin 69.3 26 0.00057 28.9 7.0 73 255-341 26-103 (149)
479 cd03032 ArsC_Spx Arsenate Redu 69.2 11 0.00023 29.9 4.9 44 257-306 2-49 (115)
480 PF07689 KaiB: KaiB domain; I 68.4 1.8 3.9E-05 32.4 0.2 53 146-201 3-57 (82)
481 PRK13344 spxA transcriptional 68.1 13 0.00028 30.4 5.2 34 257-296 2-35 (132)
482 PRK12559 transcriptional regul 67.4 9.3 0.0002 31.2 4.3 34 257-296 2-35 (131)
483 COG2209 NqrE Na+-transporting 67.3 3.6 7.7E-05 34.4 1.7 24 34-57 141-164 (198)
484 cd03024 DsbA_FrnE DsbA family, 67.1 9.6 0.00021 32.9 4.6 34 301-338 166-200 (201)
485 cd03051 GST_N_GTT2_like GST_N 66.7 11 0.00025 26.3 4.2 54 259-316 3-57 (74)
486 cd03037 GST_N_GRX2 GST_N famil 66.1 12 0.00026 26.3 4.3 51 145-201 3-53 (71)
487 PF13417 GST_N_3: Glutathione 64.8 18 0.0004 25.8 5.1 56 146-208 2-57 (75)
488 COG0450 AhpC Peroxiredoxin [Po 63.8 81 0.0018 27.6 9.5 87 253-342 33-161 (194)
489 COG3634 AhpF Alkyl hydroperoxi 63.1 30 0.00066 33.3 7.2 77 127-208 104-180 (520)
490 cd03055 GST_N_Omega GST_N fami 62.3 29 0.00064 25.7 5.9 54 143-201 19-72 (89)
491 COG1651 DsbG Protein-disulfide 62.2 17 0.00038 32.5 5.5 40 299-343 204-244 (244)
492 cd03033 ArsC_15kD Arsenate Red 62.2 21 0.00045 28.3 5.3 46 143-193 2-51 (113)
493 PF06491 Disulph_isomer: Disul 61.3 89 0.0019 25.5 9.3 88 119-210 16-110 (136)
494 PF13778 DUF4174: Domain of un 60.1 86 0.0019 24.9 9.3 76 266-341 23-111 (118)
495 PF07689 KaiB: KaiB domain; I 58.9 5.1 0.00011 30.0 1.1 51 262-315 5-56 (82)
496 PF06764 DUF1223: Protein of u 58.7 75 0.0016 28.0 8.6 80 258-343 3-99 (202)
497 cd03033 ArsC_15kD Arsenate Red 58.5 20 0.00043 28.4 4.5 46 257-308 2-51 (113)
498 cd03022 DsbA_HCCA_Iso DsbA fam 58.2 17 0.00038 30.9 4.6 24 146-169 4-27 (192)
499 KOG2640 Thioredoxin [Function 58.0 4.5 9.9E-05 37.7 0.9 88 252-343 75-163 (319)
500 cd03045 GST_N_Delta_Epsilon GS 57.5 63 0.0014 22.5 7.1 55 258-316 2-57 (74)
No 1
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.96 E-value=5.2e-28 Score=216.32 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=146.2
Q ss_pred HHHHH-HHhcCCCEEEEEEeC---CCCHHHHhhhhHHHHHHHHcCCcE--EEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 129 EFDEA-LRLAKNKLVVVEFAA---SRSLDSSKIYPFMVDLSRQCNDVE--FILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 129 ~f~~~-l~~~~~k~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~v~--f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
++.+. ++..++...++.|++ +||++|+.+.|.+++++++|+++. ++.+|.|+ .++++++|+|+++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~---~~~l~~~~~V~~~Pt~~~f 84 (215)
T TIGR02187 8 ILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE---DKEEAEKYGVERVPTTIIL 84 (215)
T ss_pred HHHHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc---cHHHHHHcCCCccCEEEEE
Confidence 33444 444456666777888 999999999999999999997754 55555556 5679999999999999999
Q ss_pred ecccccc-ccccCC-CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHH
Q 018973 203 KSMEKIH-EEEGIG-PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSR 280 (348)
Q Consensus 203 ~~g~~v~-~~~G~~-~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~ 280 (348)
++|+.+. ++.|.. .+++...+............+ + ++..+.+... ++...++.||++||++|+.+.+.+.+++.
T Consensus 85 ~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~-~~~~~~l~~~--~~pv~I~~F~a~~C~~C~~~~~~l~~l~~ 160 (215)
T TIGR02187 85 EEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-S-EKTVELLQSL--DEPVRIEVFVTPTCPYCPYAVLMAHKFAL 160 (215)
T ss_pred eCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-C-HHHHHHHHhc--CCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 9999984 888843 333332222111000011111 2 2223333332 34556666999999999999999999998
Q ss_pred HhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973 281 QMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 281 ~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~ 340 (348)
+. +++.+..+|.+++++ ++++|+|.++||++++++|+. +.|. +.++|.++|.+
T Consensus 161 ~~-~~i~~~~vD~~~~~~---~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 161 AN-DKILGEMIEANENPD---LAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred hc-CceEEEEEeCCCCHH---HHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence 86 469999999999887 999999999999999988863 7888 88999998875
No 2
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=218.04 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=75.1
Q ss_pred CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCc
Q 018973 118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKI 193 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V 193 (348)
+..|..+ +.++|++.+. .+..++|.||||||++|+++.|.+++.++... .+..++||+.+ ..++|.+|+|
T Consensus 24 ~~~Vl~L-t~dnf~~~i~--~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~---~~~~~~~y~v 97 (493)
T KOG0190|consen 24 EEDVLVL-TKDNFKETIN--GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE---ESDLASKYEV 97 (493)
T ss_pred ccceEEE-ecccHHHHhc--cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch---hhhhHhhhcC
Confidence 3345555 8999999998 78999999999999999999999999998763 48999999999 5789999999
Q ss_pred CCCCeEEEeecccc
Q 018973 194 KKVPHFSFYKSMEK 207 (348)
Q Consensus 194 ~~~Pt~~~~~~g~~ 207 (348)
+++||+.+|+||+.
T Consensus 98 ~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRS 111 (493)
T ss_pred CCCCeEEEEecCCc
Confidence 99999999999985
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=99.92 E-value=3.7e-24 Score=213.15 Aligned_cols=90 Identities=22% Similarity=0.418 Sum_probs=80.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE-EEEeC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR-GRYVG 328 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v-~~~~G 328 (348)
.+++++|+||++||++|+.+.|.|+++++.+++ .+.++.+|++.++. .+++++++++||+++|++|+.+ .++.|
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~v~~~Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFSWSAFPTILFVKAGERTPIPYEG 450 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCCCcccCeEEEEECCCcceeEecC
Confidence 478999999999999999999999999988864 58999999999887 8899999999999999877654 57899
Q ss_pred C-ChHHHHHHHHHHhCC
Q 018973 329 S-GKGELIGEILRYQGV 344 (348)
Q Consensus 329 ~-~~~~L~~~l~~~~~~ 344 (348)
. +.++|.++|+++...
T Consensus 451 ~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 451 ERTVEGFKEFVNKHATN 467 (477)
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 8 999999999998754
No 4
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.1e-24 Score=205.89 Aligned_cols=207 Identities=20% Similarity=0.305 Sum_probs=162.6
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM 205 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g 205 (348)
...+...+. .+++++|+||++||++|+.+.|.|.++++.+.+ +.+..||+++ ++++|++|+|+++||+.+|.+|
T Consensus 37 ~~~~~~~~~--~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 37 DSFFDFLLK--DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred cccHHHhhc--cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccCcEEEEEcCC
Confidence 333334444 689999999999999999999999999999988 8999999999 7779999999999999999999
Q ss_pred cccccccc-CCCCccccccccc-----CCCccc-eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHH
Q 018973 206 EKIHEEEG-IGPDQLMGDVLYY-----GDSHSA-VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKL 278 (348)
Q Consensus 206 ~~v~~~~G-~~~~~l~~~v~~~-----~~~~~~-v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~l 278 (348)
.....+.| .+.+.+....... ...... +..+ ...++...+.+ .+..++|.||+|||++|+.+.|.+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFEL-TKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred CceeeccCcccHHHHHHHHHHhhccccccccCCceEEc-cccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHH
Confidence 44555555 2233333322211 111122 4443 44566666665 378899999999999999999999999
Q ss_pred HHHhC--CcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE-EEEEeCC-ChHHHHHHHHHHhCCC
Q 018973 279 SRQMA--GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI-RGRYVGS-GKGELIGEILRYQGVR 345 (348)
Q Consensus 279 a~~~~--~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~-v~~~~G~-~~~~L~~~l~~~~~~~ 345 (348)
+..+. +.+.++.+|++.... ++++++|.++||+++|++|.. ...+.|. +.+.+..++....+.+
T Consensus 188 a~~~~~~~~v~~~~~d~~~~~~---~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 188 AKLLKSKENVELGKIDATVHKS---LASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred HHHhccCcceEEEeeccchHHH---HhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 99884 569999999985555 999999999999999998887 6677777 9999999999887653
No 5
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=7.2e-24 Score=167.58 Aligned_cols=102 Identities=70% Similarity=1.091 Sum_probs=93.6
Q ss_pred cCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 125 ~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
+|.++|++.+.++++++|||+|||+||+||+.+.|.|++++++++++.|++||+|+.++..+++++|+|+++||+++|++
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 57899999999878999999999999999999999999999999889999999998765568999999999999999999
Q ss_pred cccccccccCCCCccccccccc
Q 018973 205 MEKIHEEEGIGPDQLMGDVLYY 226 (348)
Q Consensus 205 g~~v~~~~G~~~~~l~~~v~~~ 226 (348)
|+.+.++.|..+++|...+.++
T Consensus 81 G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 81 GEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred CeEEEEEeCCCHHHHHHHHHhc
Confidence 9999999999988888766554
No 6
>PTZ00062 glutaredoxin; Provisional
Probab=99.90 E-value=6.2e-23 Score=180.12 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=128.2
Q ss_pred cCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 125 ~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
.+.++|++.+++ ....+|++|+|+||++|+.+.|.|.+|+++|+++.|+.||.| |+|.++|||++|++
T Consensus 4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQN 71 (204)
T ss_pred CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEEC
Confidence 478999999873 237789999999999999999999999999999999999966 89999999999999
Q ss_pred cccccccccCCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEe----CCCChhhhhhhhHHHHHHH
Q 018973 205 MEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVG----LKHCGPCVKVYPTVIKLSR 280 (348)
Q Consensus 205 g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~----a~wC~~C~~~~p~l~~la~ 280 (348)
|+.++++.|+++..+...+..+..... .++..+.+++.. +.++++|+-- .|+|++|+++...|.+.
T Consensus 72 g~~i~r~~G~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-- 141 (204)
T PTZ00062 72 SQLINSLEGCNTSTLVSFIRGWAQKGS-------SEDTVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-- 141 (204)
T ss_pred CEEEeeeeCCCHHHHHHHHHHHcCCCC-------HHHHHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHc--
Confidence 999999999999999887776544322 122333333322 2344444333 37999999987666642
Q ss_pred HhCCcEEEEEEECCCchhHHHHHHhC-CCCccceEEEEeCCeEE
Q 018973 281 QMAGTVVFARMNGDENDSCMQFLRDM-NVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 281 ~~~~~v~~~~vd~~~~~~~~~l~~~~-~V~~~PTl~~~~~G~~v 323 (348)
++.|..+|+++.++.++..+++ |...+|.+.+ +|+.+
T Consensus 142 ----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 142 ----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred ----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 3677888998777655444443 5556666554 78765
No 7
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.90 E-value=1.9e-22 Score=199.62 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=78.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE--EEE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR--GRY 326 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v--~~~ 326 (348)
.++.++|+||++||++|+.+.|.+.++++.+.+ ++.|+++|++.++ +.. ++|.++||+++|++|... ..+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~i~~~Pt~~~~~~~~~~~~~~~ 437 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FEVEGFPTIKFVPAGKKSEPVPY 437 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CCccccCEEEEEeCCCCcCceEe
Confidence 478899999999999999999999999999976 6999999999876 444 999999999999988653 567
Q ss_pred eCC-ChHHHHHHHHHHhCCCC
Q 018973 327 VGS-GKGELIGEILRYQGVRV 346 (348)
Q Consensus 327 ~G~-~~~~L~~~l~~~~~~~~ 346 (348)
.|. +.+.|.++|.++...++
T Consensus 438 ~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred cCcCCHHHHHHHHHhcCCCCC
Confidence 787 99999999998876544
No 8
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-23 Score=164.97 Aligned_cols=94 Identities=32% Similarity=0.446 Sum_probs=81.4
Q ss_pred cCHHHHHHHHH--hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 125 HSIEEFDEALR--LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 125 ~s~~~f~~~l~--~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
.+.++++..+. +.+++++||+|||+|||||+.+.|.+++|+.+|+++.|++||+|+ ..+++++++|+.+|||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~~~~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 5 ETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---LEEVAKEFNVKAMPTFVFY 81 (106)
T ss_pred EehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---CHhHHHhcCceEeeEEEEE
Confidence 34444444433 334799999999999999999999999999999999999999999 5679999999999999999
Q ss_pred eccccccccccCCCCcccc
Q 018973 203 KSMEKIHEEEGIGPDQLMG 221 (348)
Q Consensus 203 ~~g~~v~~~~G~~~~~l~~ 221 (348)
++|+.+.++.|++.+.+..
T Consensus 82 k~g~~~~~~vGa~~~~l~~ 100 (106)
T KOG0907|consen 82 KGGEEVDEVVGANKAELEK 100 (106)
T ss_pred ECCEEEEEEecCCHHHHHH
Confidence 9999999999998776553
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.8e-23 Score=168.76 Aligned_cols=98 Identities=28% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
.....+.+.++|++.+.+ .+.||+|+|||+||+||+.+.|.|++++.+|.| ++|++||+|+ ..+++.+|+|+++|
T Consensus 42 ~~~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~avP 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAVP 117 (150)
T ss_pred cccccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeeee
Confidence 456677899999999875 699999999999999999999999999999988 9999999999 55699999999999
Q ss_pred eEEEeeccccccccccCCCC-ccc
Q 018973 198 HFSFYKSMEKIHEEEGIGPD-QLM 220 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G~~~~-~l~ 220 (348)
|+++|+||++++++.|+.+. +|.
T Consensus 118 tvlvfknGe~~d~~vG~~~~~~l~ 141 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRFVGAVPKEQLR 141 (150)
T ss_pred EEEEEECCEEeeeecccCCHHHHH
Confidence 99999999999999996544 444
No 10
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.89 E-value=2.1e-22 Score=160.24 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=83.2
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
+.++|++.+....+++|||+|||+||+||+.|.|.|+++++++++ +.|++||+|+ .++++++|+|+++||+++|++
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDPPTVMFFFR 77 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCCCEEEEEEC
Confidence 468899999866789999999999999999999999999999998 7999999999 556999999999999999999
Q ss_pred ccccccccc-CCCCccc
Q 018973 205 MEKIHEEEG-IGPDQLM 220 (348)
Q Consensus 205 g~~v~~~~G-~~~~~l~ 220 (348)
|+.+.+..| .+.+.+.
T Consensus 78 G~~v~~~~G~~~~~~~~ 94 (114)
T cd02954 78 NKHMKIDLGTGNNNKIN 94 (114)
T ss_pred CEEEEEEcCCCCCceEE
Confidence 999999988 4455555
No 11
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.7e-22 Score=163.52 Aligned_cols=107 Identities=22% Similarity=0.480 Sum_probs=100.6
Q ss_pred cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE 310 (348)
Q Consensus 231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~ 310 (348)
...+...+.++|++.+.+ ++.||+|+|||+||+||+.+.|.|+++..++.++++|+++|+|++.+ ++.+|+|..
T Consensus 42 ~~~~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e---la~~Y~I~a 115 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE---LAEDYEISA 115 (150)
T ss_pred cccccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc---hHhhcceee
Confidence 356677789999999887 48999999999999999999999999999999999999999999998 999999999
Q ss_pred cceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 311 VPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 311 ~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+||+++|++|+.+.++.|. +.+.|..+|+++++
T Consensus 116 vPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 116 VPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999 99999999999875
No 12
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-22 Score=175.72 Aligned_cols=105 Identities=30% Similarity=0.409 Sum_probs=98.4
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
.|..|.+..+|+..+..++.++|+|+|+|+|||||++++|.+..|+.+|++.+|++||+|+|.. .+..+||.++|||
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~---taa~~gV~amPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG---TAATNGVNAMPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc---hhhhcCcccCceE
Confidence 5788999999999999989999999999999999999999999999999999999999999654 8899999999999
Q ss_pred EEeeccccccccccCCCCcccccccccC
Q 018973 200 SFYKSMEKIHEEEGIGPDQLMGDVLYYG 227 (348)
Q Consensus 200 ~~~~~g~~v~~~~G~~~~~l~~~v~~~~ 227 (348)
++|+||..++.+.|++...|+..+.++.
T Consensus 79 iff~ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred EEEecCeEeeeecCCCHHHHHHHHHHHh
Confidence 9999999999999999999888776653
No 13
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.85 E-value=2.9e-20 Score=146.91 Aligned_cols=102 Identities=47% Similarity=0.826 Sum_probs=91.4
Q ss_pred CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
++.+++++.+.+. .+++++|+||++||++|+.+.|.|.++++++ +++.|+.||+++++...+++++|+|.++||+++
T Consensus 1 ~~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 1 HSVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CCHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 3578899998764 5899999999999999999999999999999 569999999998865566999999999999999
Q ss_pred EeCCeEEEEEeCCChHHHHHHHHHH
Q 018973 317 IRDGQIRGRYVGSGKGELIGEILRY 341 (348)
Q Consensus 317 ~~~G~~v~~~~G~~~~~L~~~l~~~ 341 (348)
|++|+++.++.|.++++|.+.+..+
T Consensus 78 ~~~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 78 YKDGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred EeCCeEEEEEeCCCHHHHHHHHHhc
Confidence 9999999999999889998887653
No 14
>PHA02278 thioredoxin-like protein
Probab=99.84 E-value=1.3e-20 Score=148.52 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=77.9
Q ss_pred cCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEe
Q 018973 125 HSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESE-KTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 125 ~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~ 202 (348)
.+.++|++.+. ++++|||+|||+|||||+.+.|.++++++++.. +.|++||+|..+ +..+++++|+|+++|||++|
T Consensus 2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 47889999996 789999999999999999999999999988544 789999999742 12469999999999999999
Q ss_pred eccccccccccC
Q 018973 203 KSMEKIHEEEGI 214 (348)
Q Consensus 203 ~~g~~v~~~~G~ 214 (348)
++|+.+++..|.
T Consensus 80 k~G~~v~~~~G~ 91 (103)
T PHA02278 80 KDGQLVKKYEDQ 91 (103)
T ss_pred ECCEEEEEEeCC
Confidence 999999999994
No 15
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.83 E-value=4.8e-20 Score=145.57 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=77.6
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
+.++|++.+.++++++|||+|+|+||+||+.+.|.|++++++|++ +.|++||+|+ .++++++|+|+++||++||++
T Consensus 1 ~~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~amPtfvffkn 77 (114)
T cd02986 1 SKKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYIPSTIFFFN 77 (114)
T ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeCcEEEEEEC
Confidence 357899999988899999999999999999999999999999999 9999999999 666999999999999999999
Q ss_pred ccccccccc
Q 018973 205 MEKIHEEEG 213 (348)
Q Consensus 205 g~~v~~~~G 213 (348)
|+.+.--.|
T Consensus 78 gkh~~~d~g 86 (114)
T cd02986 78 GQHMKVDYG 86 (114)
T ss_pred CcEEEEecC
Confidence 987754444
No 16
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.83 E-value=4.3e-20 Score=146.95 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=85.6
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~ 318 (348)
.+++++.+... .+++++|+|||+||+||+.+.|.|.+++.++++.+.|++||++++++ ++++|+|.++||+++|+
T Consensus 2 ~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~---la~~~~V~~iPTf~~fk 76 (114)
T cd02954 2 GWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD---FNKMYELYDPPTVMFFF 76 (114)
T ss_pred HHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHcCCCCCCEEEEEE
Confidence 46777777643 57899999999999999999999999999998878999999999998 99999999999999999
Q ss_pred CCeEEEEEeCC-----------ChHHHHHHHHHH
Q 018973 319 DGQIRGRYVGS-----------GKGELIGEILRY 341 (348)
Q Consensus 319 ~G~~v~~~~G~-----------~~~~L~~~l~~~ 341 (348)
+|+.+.+..|. +++.+++.+..+
T Consensus 77 ~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 77 RNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 99999998884 356666666544
No 17
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7e-20 Score=144.57 Aligned_cols=99 Identities=30% Similarity=0.560 Sum_probs=86.3
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~ 318 (348)
.++++.........+++++|+|||+||+||+.+.|.+.+|+.+|++ +.|+++|+|+. ++++++++|..+|||++|+
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~---~~~~~~~~V~~~PTf~f~k 82 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDEL---EEVAKEFNVKAMPTFVFYK 82 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccC---HhHHHhcCceEeeEEEEEE
Confidence 3444444444444579999999999999999999999999999987 99999999994 4599999999999999999
Q ss_pred CCeEEEEEeCCChHHHHHHHHHH
Q 018973 319 DGQIRGRYVGSGKGELIGEILRY 341 (348)
Q Consensus 319 ~G~~v~~~~G~~~~~L~~~l~~~ 341 (348)
+|+.+.++.|.+.++|.+.+.++
T Consensus 83 ~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 83 GGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999888888888764
No 18
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.82 E-value=5.8e-20 Score=147.61 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=86.7
Q ss_pred CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973 117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV 196 (348)
Q Consensus 117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~ 196 (348)
+.+.+..|.+.++|.+.+. .+++|+|+||++||++|+.+.|.|++++++|+++.|++||+++ ..+++++|+|+.+
T Consensus 2 ~~g~v~~i~~~~~~~~~i~--~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~---~~~l~~~~~v~~v 76 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVK--SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK---APFLVEKLNIKVL 76 (113)
T ss_pred CCCCeEEeCCHHHHHHHHh--CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc---CHHHHHHCCCccC
Confidence 4578999999999999997 5789999999999999999999999999999999999999999 5569999999999
Q ss_pred CeEEEeeccccccccccC
Q 018973 197 PHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 197 Pt~~~~~~g~~v~~~~G~ 214 (348)
||+++|++|+.++++.|.
T Consensus 77 Pt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 77 PTVILFKNGKTVDRIVGF 94 (113)
T ss_pred CEEEEEECCEEEEEEECc
Confidence 999999999999998885
No 19
>PHA02278 thioredoxin-like protein
Probab=99.82 E-value=1.5e-19 Score=142.42 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=83.0
Q ss_pred CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccceEE
Q 018973 237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~PTl~ 315 (348)
++.++|++.+. .+++++|+|||+||+||+.+.|.++++++++..++.|+++|+++++ +..+++++|+|.++||++
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 35678888885 4799999999999999999999999999886555789999999762 112399999999999999
Q ss_pred EEeCCeEEEEEeCC-ChHHHHHH
Q 018973 316 FIRDGQIRGRYVGS-GKGELIGE 337 (348)
Q Consensus 316 ~~~~G~~v~~~~G~-~~~~L~~~ 337 (348)
+|++|+.++++.|. +.++|.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999998 88777654
No 20
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.82 E-value=5.5e-20 Score=151.88 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=82.2
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH 198 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt 198 (348)
.+.++.|.++|++.+....+++|||+|||+||+||+.+.|.|+++++++++ +.|++||+|+ .++++++|+|+..||
T Consensus 4 ~l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~~t 80 (142)
T PLN00410 4 LLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDPCT 80 (142)
T ss_pred hHhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCCCc
Confidence 356778999999999877899999999999999999999999999999998 8889999999 566999999997766
Q ss_pred EE-Eeeccc-cccccccC
Q 018973 199 FS-FYKSME-KIHEEEGI 214 (348)
Q Consensus 199 ~~-~~~~g~-~v~~~~G~ 214 (348)
++ ||++|+ .+.+..|.
T Consensus 81 ~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 81 VMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred EEEEEECCeEEEEEeccc
Confidence 55 999998 78877773
No 21
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.81 E-value=6.9e-20 Score=144.51 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=83.1
Q ss_pred eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
++|.|.++|++++. .+++|+|+|||+||++|+.+.|.|+++++++++ +.|+++|+|. + +++++|+|+++||+
T Consensus 2 ~~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-~---~~~~~~~v~~~Pt~ 75 (102)
T cd02948 2 VEINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-I---DTLKRYRGKCEPTF 75 (102)
T ss_pred eEccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-H---HHHHHcCCCcCcEE
Confidence 45789999999986 689999999999999999999999999999974 7899999993 3 48999999999999
Q ss_pred EEeeccccccccccCCCCccc
Q 018973 200 SFYKSMEKIHEEEGIGPDQLM 220 (348)
Q Consensus 200 ~~~~~g~~v~~~~G~~~~~l~ 220 (348)
++|++|+.+.+..|.+.+.+.
T Consensus 76 ~~~~~g~~~~~~~G~~~~~~~ 96 (102)
T cd02948 76 LFYKNGELVAVIRGANAPLLN 96 (102)
T ss_pred EEEECCEEEEEEecCChHHHH
Confidence 999999999999997766654
No 22
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.81 E-value=1e-19 Score=146.17 Aligned_cols=93 Identities=23% Similarity=0.295 Sum_probs=83.9
Q ss_pred CCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973 118 DERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKV 196 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~ 196 (348)
.+.+.++.+ ++|.+.+.+.+ +++|+|+||++||++|+.+.|.|++++++|+++.|++||+++ . +++++|+|+.+
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~---~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK---A-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh---h-HHHHhcCCCcC
Confidence 467888855 99999987543 589999999999999999999999999999999999999998 4 69999999999
Q ss_pred CeEEEeeccccccccccCC
Q 018973 197 PHFSFYKSMEKIHEEEGIG 215 (348)
Q Consensus 197 Pt~~~~~~g~~v~~~~G~~ 215 (348)
||+++|++|+.++++.|..
T Consensus 78 Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 78 PTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred CEEEEEECCEEEEEEecHH
Confidence 9999999999999998843
No 23
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.81 E-value=1.5e-19 Score=144.82 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=80.0
Q ss_pred CCCceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHH-HHcCcC
Q 018973 118 DERVKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELC-EREKIK 194 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~-~~~~V~ 194 (348)
.+.|.++ +.++|++++. ..++++++|+|||+||++|+.+.|.|+++++++.+ +.|++||+|+ ..++| ++|+|+
T Consensus 8 ~~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~ 83 (113)
T cd03006 8 RSPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFF 83 (113)
T ss_pred CCCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCc
Confidence 3456776 7888988732 23789999999999999999999999999999987 8999999998 45588 589999
Q ss_pred CCCeEEEeeccccccccccC
Q 018973 195 KVPHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 195 ~~Pt~~~~~~g~~v~~~~G~ 214 (348)
++||+++|++|+...++.|.
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~ 103 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGP 103 (113)
T ss_pred ccCEEEEEECCccceEEeCC
Confidence 99999999999988777774
No 24
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=2.6e-19 Score=140.76 Aligned_cols=89 Identities=15% Similarity=0.291 Sum_probs=80.1
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH 198 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt 198 (348)
.++++ +.++|++.+. .+++++|+|||+||++|+.+.|.|+++++++++ +.|++||+|+ .+++|++|+|+.+||
T Consensus 2 ~~~~l-~~~~f~~~v~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTL-DRGDFDAAVN--SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSYPS 75 (101)
T ss_pred CeEEc-CHhhHHHHhc--CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCccCE
Confidence 35566 7889999986 569999999999999999999999999999976 8999999998 556999999999999
Q ss_pred EEEeeccccccccccC
Q 018973 199 FSFYKSMEKIHEEEGI 214 (348)
Q Consensus 199 ~~~~~~g~~v~~~~G~ 214 (348)
+++|++|+.+.++.|.
T Consensus 76 ~~~~~~g~~~~~~~G~ 91 (101)
T cd03003 76 LYVFPSGMNPEKYYGD 91 (101)
T ss_pred EEEEcCCCCcccCCCC
Confidence 9999999988888774
No 25
>PTZ00051 thioredoxin; Provisional
Probab=99.80 E-value=4.1e-19 Score=138.61 Aligned_cols=96 Identities=30% Similarity=0.460 Sum_probs=88.3
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
.+.++.+.++|+++++ .+++++|+||++||++|+.+.|.|++++++++++.|+.+|+++ ..+++++|+|+++||+
T Consensus 1 ~v~~i~~~~~~~~~~~--~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 1 MVHIVTSQAEFESTLS--QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE---LSEVAEKENITSMPTF 75 (98)
T ss_pred CeEEecCHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc---hHHHHHHCCCceeeEE
Confidence 3678889999999987 6899999999999999999999999999999999999999998 5679999999999999
Q ss_pred EEeeccccccccccCCCCccc
Q 018973 200 SFYKSMEKIHEEEGIGPDQLM 220 (348)
Q Consensus 200 ~~~~~g~~v~~~~G~~~~~l~ 220 (348)
++|++|+.+.++.|.+.+.+.
T Consensus 76 ~~~~~g~~~~~~~G~~~~~~~ 96 (98)
T PTZ00051 76 KVFKNGSVVDTLLGANDEALK 96 (98)
T ss_pred EEEeCCeEEEEEeCCCHHHhh
Confidence 999999999999998776654
No 26
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.79 E-value=7.2e-19 Score=147.86 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=84.4
Q ss_pred CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCC
Q 018973 118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKK 195 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~ 195 (348)
+..+.++ +.++|++.+...++++|+|+|||+||++|+.+.|.|+++++++. ++.|++||+|+ .++++++|+|+.
T Consensus 27 ~~~v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~ 102 (152)
T cd02962 27 PEHIKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVST 102 (152)
T ss_pred CCccEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCcee
Confidence 3566666 78899999876678899999999999999999999999999986 39999999999 556999999988
Q ss_pred ------CCeEEEeeccccccccccCCC
Q 018973 196 ------VPHFSFYKSMEKIHEEEGIGP 216 (348)
Q Consensus 196 ------~Pt~~~~~~g~~v~~~~G~~~ 216 (348)
+||+++|++|+++.++.|++.
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G~~~ 129 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPYYND 129 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEecccc
Confidence 999999999999999999543
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.79 E-value=2.3e-19 Score=140.93 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCC-CchhHHHHHHHcCcCCCCeEEEeecc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGD-ESEKTKELCEREKIKKVPHFSFYKSM 205 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d-~~~~~~~l~~~~~V~~~Pt~~~~~~g 205 (348)
...+.+++.+.++++|+|+|||+||++|+.+.|.|++++++++++.|++||.+ + ..+++++|+|+++||+++|++|
T Consensus 6 ~~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~---~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 6 LNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI---KPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred hhHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC---CHHHHHhcCCeecCEEEEEcCC
Confidence 35667777777899999999999999999999999999999999999999988 5 4579999999999999999999
Q ss_pred ccccccccC
Q 018973 206 EKIHEEEGI 214 (348)
Q Consensus 206 ~~v~~~~G~ 214 (348)
.+.++.|.
T Consensus 83 -~~~~~~G~ 90 (100)
T cd02999 83 -PRVRYNGT 90 (100)
T ss_pred -ceeEecCC
Confidence 77788774
No 28
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.79 E-value=2.3e-18 Score=135.00 Aligned_cols=99 Identities=30% Similarity=0.530 Sum_probs=92.4
Q ss_pred CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
.+.++|++.+.+ .+++++|+||++||++|+.+.|.|.++++.+.+++.|+.+|++++.+ ++++|+|.++||+++
T Consensus 4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE---LCKKYGVKSVPTIIF 77 (103)
T ss_dssp ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH---HHHHTTCSSSSEEEE
T ss_pred CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch---hhhccCCCCCCEEEE
Confidence 366889999886 37999999999999999999999999999998789999999999877 999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 317 IRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 317 ~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
|++|+.+.++.|. +.++|.++|+++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999 999999999875
No 29
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.79 E-value=9.3e-19 Score=138.24 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=79.8
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+.++ +.++|++.+.+ .+++|+|+|||+||++|+.+.|.|+++++++.+ +.|++||+++ ..++|++|+|+++||+
T Consensus 3 v~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 3 VITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAYPTI 77 (104)
T ss_pred ceEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcccEE
Confidence 5566 78999998875 467999999999999999999999999999865 8999999999 5679999999999999
Q ss_pred EEeecc-ccccccccC
Q 018973 200 SFYKSM-EKIHEEEGI 214 (348)
Q Consensus 200 ~~~~~g-~~v~~~~G~ 214 (348)
++|++| +.+.++.|.
T Consensus 78 ~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 78 RLYPGNASKYHSYNGW 93 (104)
T ss_pred EEEcCCCCCceEccCC
Confidence 999988 888888884
No 30
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.79 E-value=2.3e-18 Score=135.76 Aligned_cols=97 Identities=27% Similarity=0.454 Sum_probs=87.2
Q ss_pred cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
+.+.+++++.+. .+++++|+||++||++|+.+.|.+.+++++++++ +.|+.+|++ .++ ++++|+|+++||+
T Consensus 4 i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~---~~~~~~v~~~Pt~ 75 (102)
T cd02948 4 INNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID---TLKRYRGKCEPTF 75 (102)
T ss_pred ccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH---HHHHcCCCcCcEE
Confidence 467888999876 4789999999999999999999999999999743 789999999 454 8999999999999
Q ss_pred EEEeCCeEEEEEeCCChHHHHHHHHH
Q 018973 315 LFIRDGQIRGRYVGSGKGELIGEILR 340 (348)
Q Consensus 315 ~~~~~G~~v~~~~G~~~~~L~~~l~~ 340 (348)
++|++|+.+.+..|.+.+.|.++|++
T Consensus 76 ~~~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 76 LFYKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EEEECCEEEEEEecCChHHHHHHHhh
Confidence 99999999999999988999998875
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.78 E-value=1.9e-18 Score=134.38 Aligned_cols=94 Identities=19% Similarity=0.360 Sum_probs=84.8
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG 320 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G 320 (348)
+|++.+.+. .+++++|+||++||++|+.+.|.+++++..+++.+.++.+|++++++ ++++|+|.++||+++|++|
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ---IAQQFGVQALPTVYLFAAG 76 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH---HHHHcCCCCCCEEEEEeCC
Confidence 466666543 47899999999999999999999999999998789999999999887 9999999999999999999
Q ss_pred eEEEEEeCC-ChHHHHHHHH
Q 018973 321 QIRGRYVGS-GKGELIGEIL 339 (348)
Q Consensus 321 ~~v~~~~G~-~~~~L~~~l~ 339 (348)
+.+.++.|. +.++|..+|+
T Consensus 77 ~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 QPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeeeecCCCCHHHHHHHhC
Confidence 999999999 8999988863
No 32
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=2.2e-18 Score=139.04 Aligned_cols=103 Identities=14% Similarity=0.253 Sum_probs=92.0
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChh--hh--hhhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHHh
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGP--CV--KVYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLRD 305 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~--C~--~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~~ 305 (348)
.+..+ +.++|++.+.++ +.++|++||++||++ |+ .+.|.+.+++.++ .+++.|++||++++++ ++++
T Consensus 10 ~v~~l-t~~nF~~~v~~~---~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~---La~~ 82 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKY---DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK---VAKK 82 (120)
T ss_pred ceeeC-ChhhHHHHHHhC---CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH---HHHH
Confidence 34444 468999998874 789999999999988 99 8889999999998 7789999999999988 9999
Q ss_pred CCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 306 MNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 306 ~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
|+|.++||+++|++|+++. +.|. +.+.|.++|.+..
T Consensus 83 ~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 LGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999999887 9999 9999999998764
No 33
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=1.1e-18 Score=150.79 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=87.4
Q ss_pred CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973 116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
...+.+.+|.+.++|.+.+.+.+ +.+|||+||++||++|+.+.|.|++|+++|++++|++||+++ . +++.+|+|+
T Consensus 59 ~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~---~-~l~~~f~v~ 134 (175)
T cd02987 59 RRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA---T-GASDEFDTD 134 (175)
T ss_pred CCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc---h-hhHHhCCCC
Confidence 45788999977799999987543 569999999999999999999999999999999999999998 3 699999999
Q ss_pred CCCeEEEeeccccccccccCCC
Q 018973 195 KVPHFSFYKSMEKIHEEEGIGP 216 (348)
Q Consensus 195 ~~Pt~~~~~~g~~v~~~~G~~~ 216 (348)
.+||+++|++|+.+.++.|...
T Consensus 135 ~vPTlllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 135 ALPALLVYKGGELIGNFVRVTE 156 (175)
T ss_pred CCCEEEEEECCEEEEEEechHH
Confidence 9999999999999999988643
No 34
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.78 E-value=4e-18 Score=140.83 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=93.1
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P 312 (348)
+..+.+.+++++.+... .+++++|+||++||+||+.+.|.|.++++++++.+.|++||+|++++ ++++|+|.+.|
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d---la~~y~I~~~~ 79 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD---FNTMYELYDPC 79 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHcCccCCC
Confidence 34567899999998754 58899999999999999999999999999998779999999999998 99999999887
Q ss_pred eEE-EEeCCe-EEEEEeC--------C-ChHHHHHHHHHHh
Q 018973 313 TFL-FIRDGQ-IRGRYVG--------S-GKGELIGEILRYQ 342 (348)
Q Consensus 313 Tl~-~~~~G~-~v~~~~G--------~-~~~~L~~~l~~~~ 342 (348)
|++ +|++|+ .+.+..| . +.++|++.++..+
T Consensus 80 t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 80 TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred cEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 554 999999 8899999 5 8889999888764
No 35
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.77 E-value=1.3e-18 Score=140.48 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHH--HH--hhhhHHHHHHHHc--C-CcEEEEEeCCCchhHHHHHH
Q 018973 117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLD--SS--KIYPFMVDLSRQC--N-DVEFILVMGDESEKTKELCE 189 (348)
Q Consensus 117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~--C~--~~~p~l~~la~~~--~-~v~f~~vd~d~~~~~~~l~~ 189 (348)
+...+..+ |.++|++.+.+ .+.++|++||+.||+| |+ .+.|.++++++++ . ++.|++||+|+ .+++|+
T Consensus 7 ~~~~v~~l-t~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~ 81 (120)
T cd03065 7 GKDRVIDL-NEKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAK 81 (120)
T ss_pred CCcceeeC-ChhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHH
Confidence 34456666 78999999875 5779999999999988 99 8999999999998 5 49999999999 567999
Q ss_pred HcCcCCCCeEEEeeccccccccccCC
Q 018973 190 REKIKKVPHFSFYKSMEKIHEEEGIG 215 (348)
Q Consensus 190 ~~~V~~~Pt~~~~~~g~~v~~~~G~~ 215 (348)
+|||+++||+++|++|+.+. +.|..
T Consensus 82 ~~~I~~iPTl~lfk~G~~v~-~~G~~ 106 (120)
T cd03065 82 KLGLDEEDSIYVFKDDEVIE-YDGEF 106 (120)
T ss_pred HcCCccccEEEEEECCEEEE-eeCCC
Confidence 99999999999999999887 88854
No 36
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8e-19 Score=158.54 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=86.5
Q ss_pred ceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe
Q 018973 121 VKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH 198 (348)
Q Consensus 121 v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt 198 (348)
+++| |..+|+..+. +++.+||+|+||||||+||+.+.|.|++++.+|.+ +.+++||||+ .+.++..|||+++||
T Consensus 25 I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsIPt 100 (304)
T COG3118 25 IKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSIPT 100 (304)
T ss_pred ceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcCCe
Confidence 8888 7788876644 45577999999999999999999999999999988 9999999999 556999999999999
Q ss_pred EEEeeccccccccccCCCC-cccc
Q 018973 199 FSFYKSMEKIHEEEGIGPD-QLMG 221 (348)
Q Consensus 199 ~~~~~~g~~v~~~~G~~~~-~l~~ 221 (348)
++.|++|++|+.|.|..++ ++++
T Consensus 101 V~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 101 VYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEeeCCcCccccCCCCcHHHHHH
Confidence 9999999999999998876 4443
No 37
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.77 E-value=1.4e-18 Score=135.29 Aligned_cols=92 Identities=27% Similarity=0.471 Sum_probs=82.8
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH-cCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ-CNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~-~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
|.++|++++.++.+++|+|+||++||++|+.+.|.|++++++ ++++.|+++|.++ ..+++++|+|+++||+++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccccEEEEEEC
Confidence 568999999876689999999999999999999999999999 5679999999998 556999999999999999999
Q ss_pred cccccccccCCCCccc
Q 018973 205 MEKIHEEEGIGPDQLM 220 (348)
Q Consensus 205 g~~v~~~~G~~~~~l~ 220 (348)
|+.+.+..|...+.+.
T Consensus 78 g~~~~~~~g~~~~~l~ 93 (97)
T cd02984 78 GTIVDRVSGADPKELA 93 (97)
T ss_pred CEEEEEEeCCCHHHHH
Confidence 9999999997766554
No 38
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=1.7e-18 Score=134.72 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
++|++.+.+.++++|+|+|||+||++|+.+.|.++++++.+++ +.|++||+++ .++++++|+|+++||+++|++|+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCCCEEEEEeCCE
Confidence 3678888766789999999999999999999999999999976 8899999999 55699999999999999999999
Q ss_pred cccccccCC
Q 018973 207 KIHEEEGIG 215 (348)
Q Consensus 207 ~v~~~~G~~ 215 (348)
.+.++.|..
T Consensus 78 ~~~~~~g~~ 86 (96)
T cd02956 78 PVDGFQGAQ 86 (96)
T ss_pred EeeeecCCC
Confidence 998888743
No 39
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=1.4e-18 Score=136.22 Aligned_cols=93 Identities=29% Similarity=0.478 Sum_probs=83.1
Q ss_pred ecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 124 VHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 124 v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
..|.++|++.+.+ .++++||+||++||++|+.+.|.|++++++++ ++.|+.||+++ .++++++|+|+.+||+++|
T Consensus 3 ~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 3 VLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp EESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSSSEEEEE
T ss_pred ECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCCCEEEEE
Confidence 3489999999985 58999999999999999999999999999998 69999999998 5679999999999999999
Q ss_pred eccccccccccC-CCCccc
Q 018973 203 KSMEKIHEEEGI-GPDQLM 220 (348)
Q Consensus 203 ~~g~~v~~~~G~-~~~~l~ 220 (348)
++|+.+.++.|. +.+.|.
T Consensus 79 ~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 79 KNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp ETTEEEEEEESSSSHHHHH
T ss_pred ECCcEEEEEECCCCHHHHH
Confidence 999999988885 344433
No 40
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.76 E-value=4.1e-18 Score=136.44 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=84.8
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHH-HhCCCCcc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFL-RDMNVVEV 311 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~-~~~~V~~~ 311 (348)
+.++ +.++|++.+.- ...+++++|.||++||++|+.+.|.++++++++++.+.|++||++++.+ ++ ++|+|.++
T Consensus 11 v~~l-~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l~~~~~~I~~~ 85 (113)
T cd03006 11 VLDF-YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---KCRKQKHFFYF 85 (113)
T ss_pred eEEe-chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---HHHHhcCCccc
Confidence 4444 44667765221 1157999999999999999999999999999998889999999999887 88 58999999
Q ss_pred ceEEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973 312 PTFLFIRDGQIRGRYVGS-GKGELIGE 337 (348)
Q Consensus 312 PTl~~~~~G~~v~~~~G~-~~~~L~~~ 337 (348)
||+++|++|+...++.|. +.+.|..+
T Consensus 86 PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 86 PVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred CEEEEEECCccceEEeCCCCHHHHHhh
Confidence 999999999988999999 88888875
No 41
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=3.8e-18 Score=134.09 Aligned_cols=93 Identities=17% Similarity=0.384 Sum_probs=84.8
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
+.++|++.+. .+++++|+||++||++|+.+.|.+.++++++++.+.|+++|+++++. ++++++|+++||+++|
T Consensus 7 ~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 7 DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCRSQGVNSYPSLYVF 79 (101)
T ss_pred CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH---HHHHcCCCccCEEEEE
Confidence 5678888875 35899999999999999999999999999998889999999999887 9999999999999999
Q ss_pred eCCeEEEEEeCC-ChHHHHHH
Q 018973 318 RDGQIRGRYVGS-GKGELIGE 337 (348)
Q Consensus 318 ~~G~~v~~~~G~-~~~~L~~~ 337 (348)
++|+.+.++.|. +.++|.++
T Consensus 80 ~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 80 PSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCcccCCCCCCHHHHHhh
Confidence 999999999998 88888765
No 42
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=5.4e-18 Score=133.88 Aligned_cols=95 Identities=21% Similarity=0.383 Sum_probs=85.7
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
+.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++.+.+.|+++|++++++ ++++|+|.++||+++|
T Consensus 7 ~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 7 TPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES---LCQQANIRAYPTIRLY 80 (104)
T ss_pred CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH---HHHHcCCCcccEEEEE
Confidence 56788888765 36799999999999999999999999999998789999999999887 9999999999999999
Q ss_pred eCC-eEEEEEeCC-C-hHHHHHHH
Q 018973 318 RDG-QIRGRYVGS-G-KGELIGEI 338 (348)
Q Consensus 318 ~~G-~~v~~~~G~-~-~~~L~~~l 338 (348)
++| +.+.++.|. + .++|.+||
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 988 889999998 6 88888764
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.75 E-value=2.9e-18 Score=135.59 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=78.1
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCC--CHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASR--SLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
|..+|++.++ .+..+||+|||+| |++|+.+.|.|++++++|++ +.|++||+|+ .++++.+|+|+++||+++|
T Consensus 16 ~~~~~~~~~~--~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 16 DAATLDDWLA--AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRTPALLFF 90 (111)
T ss_pred ccccHHHHHh--CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcCCEEEEE
Confidence 7788998884 6889999999997 99999999999999999988 7899999999 4569999999999999999
Q ss_pred eccccccccccCC
Q 018973 203 KSMEKIHEEEGIG 215 (348)
Q Consensus 203 ~~g~~v~~~~G~~ 215 (348)
++|+.+.++.|..
T Consensus 91 kdGk~v~~~~G~~ 103 (111)
T cd02965 91 RDGRYVGVLAGIR 103 (111)
T ss_pred ECCEEEEEEeCcc
Confidence 9999999998843
No 44
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=2.2e-17 Score=137.58 Aligned_cols=98 Identities=21% Similarity=0.439 Sum_probs=89.9
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
+.+++++.+. .+++++|+||++||++|+.+.|.|.++++++.+++.|+++|++++++ ++++|+|.++||+++|
T Consensus 41 ~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 41 TGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE---LSARFRIRSIPTIMIF 113 (139)
T ss_pred CHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH---HHHhcCCCccCEEEEE
Confidence 5678888775 47999999999999999999999999999998789999999999887 9999999999999999
Q ss_pred eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 318 RDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 318 ~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
++|+++.++.|. +.+.|.++|++++
T Consensus 114 ~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 114 KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999 8999999998763
No 45
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.3e-18 Score=152.75 Aligned_cols=107 Identities=21% Similarity=0.376 Sum_probs=95.8
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P 312 (348)
++.+ +..+|++.+... ...+||+|+||+|||++|+.+.|.|++++.++++++++++||+|+.+. ++.+|||+++|
T Consensus 25 I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~---vAaqfgiqsIP 99 (304)
T COG3118 25 IKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM---VAAQFGVQSIP 99 (304)
T ss_pred ceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh---HHHHhCcCcCC
Confidence 4444 567777766543 246699999999999999999999999999999999999999999998 99999999999
Q ss_pred eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973 313 TFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV 344 (348)
Q Consensus 313 Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~ 344 (348)
|++.|++|+.+..+.|. .++.+.+||+++++.
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999 888999999998764
No 46
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.75 E-value=7e-18 Score=134.28 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=75.4
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc----C---CcEEEEEeCCCchhHHHHHHHcC
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC----N---DVEFILVMGDESEKTKELCEREK 192 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~----~---~v~f~~vd~d~~~~~~~l~~~~~ 192 (348)
.++++ +.++|++.+. .+++++|+|||+||++|+.+.|.|+++++++ + .+.|++||+|+ ..+++++||
T Consensus 2 ~v~~l-~~~~f~~~i~--~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~ 75 (108)
T cd02996 2 EIVSL-TSGNIDDILQ--SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYR 75 (108)
T ss_pred ceEEc-CHhhHHHHHh--cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCC
Confidence 35566 7899999886 5789999999999999999999999998864 2 38999999999 456999999
Q ss_pred cCCCCeEEEeecccc-cccccc
Q 018973 193 IKKVPHFSFYKSMEK-IHEEEG 213 (348)
Q Consensus 193 V~~~Pt~~~~~~g~~-v~~~~G 213 (348)
|+++||+++|++|+. ..++.|
T Consensus 76 v~~~Ptl~~~~~g~~~~~~~~g 97 (108)
T cd02996 76 INKYPTLKLFRNGMMMKREYRG 97 (108)
T ss_pred CCcCCEEEEEeCCcCcceecCC
Confidence 999999999999984 355556
No 47
>PRK09381 trxA thioredoxin; Provisional
Probab=99.75 E-value=3.5e-17 Score=130.41 Aligned_cols=104 Identities=21% Similarity=0.452 Sum_probs=91.5
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV 311 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~ 311 (348)
.+..+ +.+++++.+.+ .+++++|+||++||++|+.+.|.++++++++++++.++.+|++..+. ++++|+|.++
T Consensus 4 ~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~ 76 (109)
T PRK09381 4 KIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYGIRGI 76 (109)
T ss_pred cceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh---HHHhCCCCcC
Confidence 34455 34677765543 37899999999999999999999999999998889999999999887 8999999999
Q ss_pred ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
||+++|++|+++.++.|. +.++|.++|++++
T Consensus 77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 77 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999999999999999 9999999998765
No 48
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=1.3e-17 Score=130.98 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=79.9
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCCCCccceEEEEeC
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMNVVEVPTFLFIRD 319 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~V~~~PTl~~~~~ 319 (348)
.+.+++.+. .+++++|+||++||++|+.+.|.|+++++++++ +.++.+|.+ ++++ ++++|+|.++||+++|++
T Consensus 8 ~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~---l~~~~~V~~~PT~~lf~~ 81 (100)
T cd02999 8 IALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPS---LLSRYGVVGFPTILLFNS 81 (100)
T ss_pred HHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHH---HHHhcCCeecCEEEEEcC
Confidence 445555544 689999999999999999999999999999964 889999998 6676 999999999999999999
Q ss_pred CeEEEEEeCC-ChHHHHHHH
Q 018973 320 GQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 320 G~~v~~~~G~-~~~~L~~~l 338 (348)
| .+.++.|. +.++|.+|+
T Consensus 82 g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 82 T-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred C-ceeEecCCCCHHHHHhhC
Confidence 9 78899999 999888774
No 49
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.74 E-value=1.6e-17 Score=132.98 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=85.8
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
+.+++++.+.. ...+++++|+||++||++|+.+.|.+.++++++++ ++.++++|+++++. ++++++|.++||+++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~---l~~~~~V~~~Pt~~i 85 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR---LARKLGAHSVPAIVG 85 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH---HHHHcCCccCCEEEE
Confidence 44666654322 11579999999999999999999999999999964 49999999998877 999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973 317 IRDGQIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 317 ~~~G~~v~~~~G~-~~~~L~~~l~~ 340 (348)
|++|+.+.++.|. +.++|.++|++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 9999999999998 89999999876
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.74 E-value=3.9e-17 Score=127.10 Aligned_cols=96 Identities=27% Similarity=0.505 Sum_probs=86.1
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
+.+++++.+... .+++++|+||++||++|+.+.+.|+++++++..++.++++|.++.++ ++++|+|.++||+++|
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~ 75 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE---ISEKFEITAVPTFVFF 75 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH---HHHhcCCccccEEEEE
Confidence 356788888764 37999999999999999999999999999965679999999998887 9999999999999999
Q ss_pred eCCeEEEEEeCCChHHHHHHH
Q 018973 318 RDGQIRGRYVGSGKGELIGEI 338 (348)
Q Consensus 318 ~~G~~v~~~~G~~~~~L~~~l 338 (348)
++|+++.++.|.+.++|.+.|
T Consensus 76 ~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 76 RNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred ECCEEEEEEeCCCHHHHHHhh
Confidence 999999999999888887765
No 51
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.74 E-value=2.6e-17 Score=130.12 Aligned_cols=92 Identities=17% Similarity=0.278 Sum_probs=83.7
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCC--ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKH--CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~ 315 (348)
+.++|++.++ .+.+++|.||++| |++|+.+.|.|.++++++++.+.|+++|++++++ ++.+|+|.++||++
T Consensus 16 ~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~---la~~f~V~sIPTli 88 (111)
T cd02965 16 DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA---LAARFGVLRTPALL 88 (111)
T ss_pred ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH---HHHHcCCCcCCEEE
Confidence 4567777774 4789999999997 9999999999999999998889999999999987 99999999999999
Q ss_pred EEeCCeEEEEEeCC-ChHHHHH
Q 018973 316 FIRDGQIRGRYVGS-GKGELIG 336 (348)
Q Consensus 316 ~~~~G~~v~~~~G~-~~~~L~~ 336 (348)
+|++|+.+.++.|. +.++|.+
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EEECCEEEEEEeCccCHHHHhh
Confidence 99999999999999 8888764
No 52
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.73 E-value=1.1e-17 Score=133.86 Aligned_cols=86 Identities=9% Similarity=0.155 Sum_probs=76.0
Q ss_pred CHHHHHHH-HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 126 SIEEFDEA-LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 126 s~~~f~~~-l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
+.++|++. +....+++|+|+|||+||++|+.+.|.+++++++++ ++.|++||+++ ..+++++++|+++||+++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccCCEEEEE
Confidence 67888764 444468999999999999999999999999999986 48999999998 4569999999999999999
Q ss_pred eccccccccccC
Q 018973 203 KSMEKIHEEEGI 214 (348)
Q Consensus 203 ~~g~~v~~~~G~ 214 (348)
++|+.+.+..|.
T Consensus 87 ~~g~~~~~~~G~ 98 (111)
T cd02963 87 INGQVTFYHDSS 98 (111)
T ss_pred ECCEEEEEecCC
Confidence 999998888884
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.73 E-value=5.5e-17 Score=128.21 Aligned_cols=98 Identities=21% Similarity=0.373 Sum_probs=84.3
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~ 318 (348)
.+++++.+.+. .++++||.|+++||++|+.+.|.|+++++++++.+.|++||+|+.++ ++++|+|...||+++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d---va~~y~I~amPtfvffk 76 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV---YTQYFDISYIPSTIFFF 76 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH---HHHhcCceeCcEEEEEE
Confidence 46777777765 68999999999999999999999999999996559999999999998 99999999999999999
Q ss_pred CCeEEE---------EEeCC--ChHHHHHHHHHH
Q 018973 319 DGQIRG---------RYVGS--GKGELIGEILRY 341 (348)
Q Consensus 319 ~G~~v~---------~~~G~--~~~~L~~~l~~~ 341 (348)
+|+-+. ++.+. +++++++.++..
T Consensus 77 ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 77 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 998763 33344 678888888754
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.72 E-value=6.2e-17 Score=130.00 Aligned_cols=92 Identities=14% Similarity=0.291 Sum_probs=83.5
Q ss_pred ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV 309 (348)
Q Consensus 230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~ 309 (348)
+..+..+.+.+++.+.+.+ +++++|+||++||++|+.+.|.++++++++++ ++|++||++++++ ++++|+|.
T Consensus 3 ~g~v~~i~~~~~~~~~i~~----~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~---l~~~~~v~ 74 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKS----SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPF---LVEKLNIK 74 (113)
T ss_pred CCCeEEeCCHHHHHHHHhC----CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHH---HHHHCCCc
Confidence 3456778888999999874 58999999999999999999999999999864 9999999999987 99999999
Q ss_pred ccceEEEEeCCeEEEEEeCC
Q 018973 310 EVPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 310 ~~PTl~~~~~G~~v~~~~G~ 329 (348)
.+||+++|++|+.++++.|.
T Consensus 75 ~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 75 VLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred cCCEEEEEECCEEEEEEECc
Confidence 99999999999999998875
No 55
>PTZ00051 thioredoxin; Provisional
Probab=99.71 E-value=1.3e-16 Score=124.43 Aligned_cols=95 Identities=23% Similarity=0.505 Sum_probs=85.1
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P 312 (348)
+..+.+.+++.+.+. .+++++|+||++||++|+.+.+.+.++++++. ++.|+.+|++++.+ ++++|+|.++|
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~---~~~~~~v~~~P 73 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSE---VAEKENITSMP 73 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHH---HHHHCCCceee
Confidence 456778888988876 36899999999999999999999999999885 49999999998776 99999999999
Q ss_pred eEEEEeCCeEEEEEeCCChHHHH
Q 018973 313 TFLFIRDGQIRGRYVGSGKGELI 335 (348)
Q Consensus 313 Tl~~~~~G~~v~~~~G~~~~~L~ 335 (348)
|+++|++|+++.++.|...++|.
T Consensus 74 t~~~~~~g~~~~~~~G~~~~~~~ 96 (98)
T PTZ00051 74 TFKVFKNGSVVDTLLGANDEALK 96 (98)
T ss_pred EEEEEeCCeEEEEEeCCCHHHhh
Confidence 99999999999999999777665
No 56
>PRK09381 trxA thioredoxin; Provisional
Probab=99.71 E-value=6e-17 Score=129.00 Aligned_cols=91 Identities=14% Similarity=0.264 Sum_probs=80.3
Q ss_pred CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
..|+++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|+++ ...++++|+|+.+|
T Consensus 3 ~~v~~~-~~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~P 77 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGIP 77 (109)
T ss_pred Ccceee-ChhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcCC
Confidence 457777 66899876653 588999999999999999999999999999976 8999999998 45599999999999
Q ss_pred eEEEeeccccccccccC
Q 018973 198 HFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G~ 214 (348)
|+++|++|+.+.++.|.
T Consensus 78 t~~~~~~G~~~~~~~G~ 94 (109)
T PRK09381 78 TLLLFKNGEVAATKVGA 94 (109)
T ss_pred EEEEEeCCeEEEEecCC
Confidence 99999999999888774
No 57
>PRK10996 thioredoxin 2; Provisional
Probab=99.71 E-value=6e-17 Score=134.91 Aligned_cols=91 Identities=23% Similarity=0.376 Sum_probs=81.0
Q ss_pred CCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973 118 DERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKV 196 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~ 196 (348)
++.+.++ +.++|+++++ .+++|+|+|||+||++|+.+.|.|+++++++.+ +.|++||+++ .++++++|+|+++
T Consensus 34 ~~~~i~~-~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~ 107 (139)
T PRK10996 34 DGEVINA-TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI 107 (139)
T ss_pred CCCCEEc-CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc
Confidence 3456665 8899999886 589999999999999999999999999998765 9999999998 4569999999999
Q ss_pred CeEEEeeccccccccccC
Q 018973 197 PHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 197 Pt~~~~~~g~~v~~~~G~ 214 (348)
||+++|++|+.+.++.|.
T Consensus 108 Ptlii~~~G~~v~~~~G~ 125 (139)
T PRK10996 108 PTIMIFKNGQVVDMLNGA 125 (139)
T ss_pred CEEEEEECCEEEEEEcCC
Confidence 999999999999888774
No 58
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.71 E-value=3.9e-17 Score=142.92 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=82.5
Q ss_pred CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973 116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
...+.+.+| |.++|...+.++. +.+|||+||++||++|+.+.|.|++|+++|++++|++||+++ ...+|+|+
T Consensus 79 ~~~G~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~------~~~~~~i~ 151 (192)
T cd02988 79 SKFGEVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ------CIPNYPDK 151 (192)
T ss_pred CCCCeEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH------hHhhCCCC
Confidence 467889999 7788887665543 579999999999999999999999999999999999999886 35799999
Q ss_pred CCCeEEEeeccccccccccCC
Q 018973 195 KVPHFSFYKSMEKIHEEEGIG 215 (348)
Q Consensus 195 ~~Pt~~~~~~g~~v~~~~G~~ 215 (348)
.+||+++|++|+.++++.|..
T Consensus 152 ~lPTlliyk~G~~v~~ivG~~ 172 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGLL 172 (192)
T ss_pred CCCEEEEEECCEEEEEEeCch
Confidence 999999999999999999853
No 59
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=2.2e-16 Score=123.11 Aligned_cols=98 Identities=27% Similarity=0.506 Sum_probs=88.3
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~ 318 (348)
.+++.+.+.+ .+++++|+||++||++|+.+.+.+.++++.+++++.|+.+|+++++. ++++|+|..+||+++|+
T Consensus 3 ~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~P~~~~~~ 76 (101)
T TIGR01068 3 DANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD---IAAKYGIRSIPTLLLFK 76 (101)
T ss_pred HHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcCCCcCCEEEEEe
Confidence 4677777764 36799999999999999999999999999987779999999999887 99999999999999999
Q ss_pred CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 319 DGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 319 ~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
+|+.+.++.|. +.++|.++|++.+
T Consensus 77 ~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 77 NGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCcEeeeecCCCCHHHHHHHHHhhC
Confidence 99999999999 8899999998753
No 60
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=1.1e-16 Score=125.45 Aligned_cols=93 Identities=19% Similarity=0.414 Sum_probs=82.7
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
+.+++++.+.+ ++++|+||++||++|+.+.|.+.++++++.+ ++.++.+|++++.. ++++|+|.++||+
T Consensus 6 ~~~~f~~~~~~-----~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~ 77 (102)
T cd03005 6 TEDNFDHHIAE-----GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE---LCSEFQVRGYPTL 77 (102)
T ss_pred CHHHHHHHhhc-----CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh---hHhhcCCCcCCEE
Confidence 45678888753 3499999999999999999999999999865 69999999999887 9999999999999
Q ss_pred EEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973 315 LFIRDGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 315 ~~~~~G~~v~~~~G~-~~~~L~~~l 338 (348)
++|++|+.+.++.|. +.++|.++|
T Consensus 78 ~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999999999999 888887764
No 61
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.71 E-value=1.9e-16 Score=127.24 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=80.2
Q ss_pred cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE 310 (348)
Q Consensus 231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~ 310 (348)
..+..+.+ ++|.+.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|++||++++ + ++++|+|.+
T Consensus 4 g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~---l~~~~~i~~ 76 (113)
T cd02957 4 GEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-F---LVNYLDIKV 76 (113)
T ss_pred ceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-H---HHHhcCCCc
Confidence 45566666 8888888753 124899999999999999999999999999996 489999999987 5 999999999
Q ss_pred cceEEEEeCCeEEEEEeCC
Q 018973 311 VPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 311 ~PTl~~~~~G~~v~~~~G~ 329 (348)
+||+++|++|+.+.++.|.
T Consensus 77 ~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 77 LPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CCEEEEEECCEEEEEEecH
Confidence 9999999999999999884
No 62
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.70 E-value=1.1e-16 Score=127.40 Aligned_cols=97 Identities=16% Similarity=0.403 Sum_probs=83.0
Q ss_pred eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC------CcEEEEEEECCCchhHHHHHHhCC
Q 018973 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA------GTVVFARMNGDENDSCMQFLRDMN 307 (348)
Q Consensus 234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~------~~v~~~~vd~~~~~~~~~l~~~~~ 307 (348)
..+ +.++|++.+. .+++++|+||++||++|+.+.|.+.++++.++ +++.|+++|++++++ ++++|+
T Consensus 4 ~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~---l~~~~~ 75 (108)
T cd02996 4 VSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD---IADRYR 75 (108)
T ss_pred EEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH---HHHhCC
Confidence 344 4678888875 36899999999999999999999999988753 248999999999887 999999
Q ss_pred CCccceEEEEeCCeE-EEEEeCC-ChHHHHHHH
Q 018973 308 VVEVPTFLFIRDGQI-RGRYVGS-GKGELIGEI 338 (348)
Q Consensus 308 V~~~PTl~~~~~G~~-v~~~~G~-~~~~L~~~l 338 (348)
|+++||+++|++|++ ..++.|. +.++|.+||
T Consensus 76 v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 INKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999999999984 4777888 888888775
No 63
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.70 E-value=8.5e-17 Score=126.29 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=73.0
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
.|.++ +.++|+++++ +. ++|+|||+||++|+.+.|.|+++++.+. ++.|++||+++ ..+++++|+|+++|
T Consensus 2 ~v~~l-~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~P 73 (101)
T cd02994 2 NVVEL-TDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTALP 73 (101)
T ss_pred ceEEc-ChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCcccC
Confidence 35666 7889998874 44 7899999999999999999999998875 48999999998 45699999999999
Q ss_pred eEEEeecccccccccc
Q 018973 198 HFSFYKSMEKIHEEEG 213 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G 213 (348)
|+++|++|+. .++.|
T Consensus 74 t~~~~~~g~~-~~~~G 88 (101)
T cd02994 74 TIYHAKDGVF-RRYQG 88 (101)
T ss_pred EEEEeCCCCE-EEecC
Confidence 9999999974 56666
No 64
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.70 E-value=7.6e-17 Score=126.46 Aligned_cols=88 Identities=22% Similarity=0.375 Sum_probs=76.5
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcCCC
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIKKV 196 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~~~ 196 (348)
+.++ +.++|++.+. .+ +++|+|||+||++|+.+.|.|+++++++. ++.|++||+++ ..++|++|+|+++
T Consensus 2 ~~~l-~~~~f~~~~~--~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~ 74 (102)
T cd03005 2 VLEL-TEDNFDHHIA--EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY 74 (102)
T ss_pred eeEC-CHHHHHHHhh--cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC
Confidence 3455 7889999996 33 59999999999999999999999999885 38999999998 4569999999999
Q ss_pred CeEEEeeccccccccccCC
Q 018973 197 PHFSFYKSMEKIHEEEGIG 215 (348)
Q Consensus 197 Pt~~~~~~g~~v~~~~G~~ 215 (348)
||+++|++|+.+.++.|..
T Consensus 75 Pt~~~~~~g~~~~~~~G~~ 93 (102)
T cd03005 75 PTLLLFKDGEKVDKYKGTR 93 (102)
T ss_pred CEEEEEeCCCeeeEeeCCC
Confidence 9999999999888888854
No 65
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.70 E-value=2.2e-16 Score=123.94 Aligned_cols=97 Identities=20% Similarity=0.359 Sum_probs=83.2
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEV 311 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~ 311 (348)
+.++ +.++|++.+. ++ ++|+||++||++|+.+.|.+.++++.+++ ++.++.+|+++++. ++++|+|.++
T Consensus 3 v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~i~~~ 72 (101)
T cd02994 3 VVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFFVTAL 72 (101)
T ss_pred eEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcCCccc
Confidence 4444 4678887764 23 78999999999999999999999988754 59999999999887 9999999999
Q ss_pred ceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973 312 PTFLFIRDGQIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~ 340 (348)
||++++++|+. .++.|. +.++|.++|++
T Consensus 73 Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 73 PTIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 99999999985 788998 99999998864
No 66
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-16 Score=140.50 Aligned_cols=107 Identities=25% Similarity=0.497 Sum_probs=98.4
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV 311 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~ 311 (348)
+++.+.+..+|+..+... ..+.++|+|++.||+||+.+.|.+..++.+|+ +..|.+||+|+... .+..+||...
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~---taa~~gV~am 75 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRG---TAATNGVNAM 75 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhc---hhhhcCcccC
Confidence 466778899999998876 68899999999999999999999999999996 48999999998776 8999999999
Q ss_pred ceEEEEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973 312 PTFLFIRDGQIRGRYVGSGKGELIGEILRYQGV 344 (348)
Q Consensus 312 PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~~~~ 344 (348)
|||++|++|..+.++.|+++..|++.+.++.+.
T Consensus 76 PTFiff~ng~kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 76 PTFIFFRNGVKIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred ceEEEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999754
No 67
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=142.18 Aligned_cols=193 Identities=15% Similarity=0.212 Sum_probs=125.7
Q ss_pred HHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC----cEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 127 IEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND----VEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 127 ~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~----v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
.+++++..++.+ +..++|+||||||++||++.|.|.+.--+.++ +++.++|+.. .+.++.++||+++||+.+
T Consensus 30 VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~---f~aiAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 30 VEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR---FPAIANEFGIQGYPTIKF 106 (468)
T ss_pred hhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc---chhhHhhhccCCCceEEE
Confidence 355555555444 68999999999999999999999998776654 8999999999 556999999999999999
Q ss_pred eeccccccccccCCCCcccccccccCCCccceeecCCh--hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHH
Q 018973 202 YKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSK--EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS 279 (348)
Q Consensus 202 ~~~g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~--~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la 279 (348)
|++|-.++.-.|...+.+.....++ ...+++.... ..+..+-+ ..++.+|+|++..-|-- ..+.+.+
T Consensus 107 ~kgd~a~dYRG~R~Kd~iieFAhR~---a~aiI~pi~enQ~~fehlq~----Rhq~ffVf~Gtge~PL~----d~fidAA 175 (468)
T KOG4277|consen 107 FKGDHAIDYRGGREKDAIIEFAHRC---AAAIIEPINENQIEFEHLQA----RHQPFFVFFGTGEGPLF----DAFIDAA 175 (468)
T ss_pred ecCCeeeecCCCccHHHHHHHHHhc---ccceeeecChhHHHHHHHhh----ccCceEEEEeCCCCcHH----HHHHHHh
Confidence 9999888766666677666543333 3344444333 23333333 36888888886543321 1233333
Q ss_pred HHhCCcEEEEEEECCCchhHHHHH-HhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 018973 280 RQMAGTVVFARMNGDENDSCMQFL-RDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 341 (348)
Q Consensus 280 ~~~~~~v~~~~vd~~~~~~~~~l~-~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~~~ 341 (348)
.+ ++.+.+.-....+ ++ ..-.....|.+.+|++..-.-.. ..+.++|.+|+.+-
T Consensus 176 Se---~~~~a~FfSasee----VaPe~~~~kempaV~VFKDetf~i~d-e~dd~dLseWinRE 230 (468)
T KOG4277|consen 176 SE---KFSVARFFSASEE----VAPEENDAKEMPAVAVFKDETFEIED-EGDDEDLSEWINRE 230 (468)
T ss_pred hh---heeeeeeeccccc----cCCcccchhhccceEEEccceeEEEe-cCchhHHHHHHhHh
Confidence 33 3433333221111 11 12234568999999987432222 22667888888764
No 68
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=3.2e-16 Score=130.97 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=84.6
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE-e
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI-R 318 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~-~ 318 (348)
.++++.+. .+++++|+||++||++|+.+.|.+.++++.+.+++.|+.||++... ..+++++|+|.++||+++| +
T Consensus 11 ~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 11 TPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred CCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCCCEEEEECC
Confidence 34555544 4799999999999999999999999999999777889999988653 1348999999999999999 5
Q ss_pred CCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 319 DGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 319 ~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+|+++.++.|. +.++|.+.|++++.
T Consensus 86 ~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 86 EGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 89999999999 88999999998763
No 69
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=2.4e-16 Score=125.26 Aligned_cols=95 Identities=19% Similarity=0.388 Sum_probs=83.6
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC--chhHHHHHHhCCCCccceEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE--NDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~~~~l~~~~~V~~~PTl~ 315 (348)
+.+++++.+.+ .+++++|+||++||++|+.+.|.+.++++.+.+.+.++.+|+++ +.+ ++++|+|.++||++
T Consensus 6 ~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~---~~~~~~i~~~Pt~~ 79 (109)
T cd03002 6 TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP---LCGKYGVQGFPTLK 79 (109)
T ss_pred chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH---HHHHcCCCcCCEEE
Confidence 45678888875 47889999999999999999999999999998779999999998 555 99999999999999
Q ss_pred EEeCCe-----EEEEEeCC-ChHHHHHHH
Q 018973 316 FIRDGQ-----IRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 316 ~~~~G~-----~v~~~~G~-~~~~L~~~l 338 (348)
+|++|+ ....+.|. +.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 998885 45678888 999999887
No 70
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=2.2e-16 Score=125.48 Aligned_cols=83 Identities=20% Similarity=0.357 Sum_probs=72.9
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+.++ +.++|++.+.+ .+++++|+|||+||++|+.+.|.|+++++++.+ +.|+.||+++.+ ..+++++|+|+++||+
T Consensus 2 v~~l-~~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYEL-TPKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEc-chhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcCCEE
Confidence 3455 78899999875 588999999999999999999999999999876 899999998733 3569999999999999
Q ss_pred EEeeccc
Q 018973 200 SFYKSME 206 (348)
Q Consensus 200 ~~~~~g~ 206 (348)
++|++|+
T Consensus 79 ~~~~~~~ 85 (109)
T cd03002 79 KVFRPPK 85 (109)
T ss_pred EEEeCCC
Confidence 9999886
No 71
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.68 E-value=3.9e-16 Score=131.30 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=79.9
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCc
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVE 310 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~ 310 (348)
.+..+ +.++|++.+... .+++++|+||++||++|+.+.|.++++++++.+ ++.|++||++++++ ++++|+|.+
T Consensus 29 ~v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---la~~~~V~~ 102 (152)
T cd02962 29 HIKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---VAEKFRVST 102 (152)
T ss_pred ccEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---HHHHcCcee
Confidence 34444 457788887643 467999999999999999999999999999864 59999999999987 999999988
Q ss_pred ------cceEEEEeCCeEEEEEeCC
Q 018973 311 ------VPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 311 ------~PTl~~~~~G~~v~~~~G~ 329 (348)
+||+++|++|+.+.++.|.
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999999973
No 72
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.68 E-value=2.6e-16 Score=126.60 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=78.1
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---C-cEEEEEeCCCchhHHHHHHHcCcCC
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---D-VEFILVMGDESEKTKELCEREKIKK 195 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~-v~f~~vd~d~~~~~~~l~~~~~V~~ 195 (348)
.+.++ +.++|++.+.+. +++|+|+|||+||++|+.+.|.|+++++++. + +.|+++|++... ..+++++|+|++
T Consensus 2 ~v~~l-~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~ 78 (114)
T cd02992 2 PVIVL-DAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTG 78 (114)
T ss_pred CeEEC-CHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCC
Confidence 35566 789999998864 4899999999999999999999999999764 3 889999986432 467999999999
Q ss_pred CCeEEEeeccccccccccCCCCcc
Q 018973 196 VPHFSFYKSMEKIHEEEGIGPDQL 219 (348)
Q Consensus 196 ~Pt~~~~~~g~~v~~~~G~~~~~l 219 (348)
+||+++|++|+ .....|...+..
T Consensus 79 ~Pt~~lf~~~~-~~~~~~~~~~~~ 101 (114)
T cd02992 79 YPTLRYFPPFS-KEATDGLKQEGP 101 (114)
T ss_pred CCEEEEECCCC-ccCCCCCcccCC
Confidence 99999999988 555555444443
No 73
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.68 E-value=5.5e-16 Score=120.94 Aligned_cols=92 Identities=25% Similarity=0.447 Sum_probs=82.7
Q ss_pred HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCe
Q 018973 242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQ 321 (348)
Q Consensus 242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~ 321 (348)
++..+.+ .+++++++||++||+.|+.+.|.+.++++++.+++.++.+|+++.++ ++++++|.++||+++|++|+
T Consensus 5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~---l~~~~~v~~vPt~~i~~~g~ 78 (97)
T cd02949 5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE---IAEAAGIMGTPTVQFFKDKE 78 (97)
T ss_pred HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH---HHHHCCCeeccEEEEEECCe
Confidence 4445554 48999999999999999999999999999998789999999999887 99999999999999999999
Q ss_pred EEEEEeCC-ChHHHHHHHH
Q 018973 322 IRGRYVGS-GKGELIGEIL 339 (348)
Q Consensus 322 ~v~~~~G~-~~~~L~~~l~ 339 (348)
.+.++.|. +.++|.++|+
T Consensus 79 ~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 79 LVKEISGVKMKSEYREFIE 97 (97)
T ss_pred EEEEEeCCccHHHHHHhhC
Confidence 99999999 8888888763
No 74
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.67 E-value=2e-16 Score=132.13 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee-c
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYK-S 204 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~-~ 204 (348)
..+|++.+. ++++|||+|||+||++|+.+.|.|++++++|.+ +.|+.||+|... ..+++++|+|+++||+++|. +
T Consensus 10 ~~~~~~a~~--~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALS--NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHh--CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCCCEEEEECCC
Confidence 455666665 789999999999999999999999999999975 889999988632 35789999999999999994 8
Q ss_pred cccccccccCCC
Q 018973 205 MEKIHEEEGIGP 216 (348)
Q Consensus 205 g~~v~~~~G~~~ 216 (348)
|+.+.++.|...
T Consensus 87 G~~v~~~~G~~~ 98 (142)
T cd02950 87 GNEEGQSIGLQP 98 (142)
T ss_pred CCEEEEEeCCCC
Confidence 999999998653
No 75
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.67 E-value=6.6e-16 Score=121.47 Aligned_cols=94 Identities=24% Similarity=0.505 Sum_probs=82.7
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCC--chhHHHHHHhCCCCccce
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDE--NDSCMQFLRDMNVVEVPT 313 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~--~~~~~~l~~~~~V~~~PT 313 (348)
+.+++++.+++ +++++|+||++||++|+.+.|.+.++++.+. +.+.++.+|+++ ++. ++++|+|.++||
T Consensus 6 ~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~i~~~Pt 78 (104)
T cd02997 6 TDEDFRKFLKK----EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA---LKEEYNVKGFPT 78 (104)
T ss_pred chHhHHHHHhh----CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH---HHHhCCCccccE
Confidence 34578877764 5699999999999999999999999999886 558999999988 665 999999999999
Q ss_pred EEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973 314 FLFIRDGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 314 l~~~~~G~~v~~~~G~-~~~~L~~~l 338 (348)
+++|++|+.+.++.|. +.++|.++|
T Consensus 79 ~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999999999999998 888888764
No 76
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.67 E-value=3.6e-16 Score=139.57 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=83.1
Q ss_pred CCceEecCHHHHHHHHHhc---CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC
Q 018973 119 ERVKKVHSIEEFDEALRLA---KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 119 ~~v~~v~s~~~f~~~l~~~---~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
..+.++ +.++|++.+... .+++++|+|||+||++|+.+.|.|+++++++++ +.|+++|+++ .++++++|+|+
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~ 105 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIK 105 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCC
Confidence 456776 899999988643 368999999999999999999999999999987 8999999998 56699999999
Q ss_pred CCCeEEEeecccccccccc-CCCCccc
Q 018973 195 KVPHFSFYKSMEKIHEEEG-IGPDQLM 220 (348)
Q Consensus 195 ~~Pt~~~~~~g~~v~~~~G-~~~~~l~ 220 (348)
++||+++|++|+.+....| ...+.+.
T Consensus 106 ~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred cCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 9999999999988876666 3334443
No 77
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.66 E-value=8.7e-16 Score=137.13 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=93.8
Q ss_pred ceeecCChhhHHHHhhhcc-cCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973 232 AVVQLHSKEDVEKLIDDHK-VDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE 310 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~-~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~ 310 (348)
.+.++ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++++++.+.|+.+|++++++ ++++|+|.+
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~---l~~~~~I~~ 106 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN---LAKRFAIKG 106 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH---HHHHcCCCc
Confidence 34555 5678998876431 135899999999999999999999999999998889999999999887 999999999
Q ss_pred cceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 311 VPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 311 ~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+||+++|++|+.+.+..|. +.++|.+++.+...
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999999998888887 99999999988753
No 78
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.66 E-value=4.4e-16 Score=125.34 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=75.9
Q ss_pred EecCHHHHHHHHHhcCCCEEEEEEeC-------CCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCch----hHHHHHHH
Q 018973 123 KVHSIEEFDEALRLAKNKLVVVEFAA-------SRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESE----KTKELCER 190 (348)
Q Consensus 123 ~v~s~~~f~~~l~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~----~~~~l~~~ 190 (348)
.+.+.++|.+.+...++++|+|+||| +||+||+.+.|.+++++++++ ++.|++||+++.+ ...++..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 35688999999987678999999999 999999999999999999998 5999999998742 13579999
Q ss_pred cCcC-CCCeEEEeecccccc
Q 018973 191 EKIK-KVPHFSFYKSMEKIH 209 (348)
Q Consensus 191 ~~V~-~~Pt~~~~~~g~~v~ 209 (348)
|+|. ++||+++|++|+.+.
T Consensus 85 ~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred cCcccCCCEEEEEcCCceec
Confidence 9998 999999998876554
No 79
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.66 E-value=9.5e-16 Score=119.94 Aligned_cols=96 Identities=18% Similarity=0.399 Sum_probs=85.9
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
.+++++.+. .+++++|+||++||++|+.+.+.+.++++.+.+ ++.++.+|++++.+ ++++|+|.++|++++
T Consensus 3 ~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 3 ASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD---LASRFGVSGFPTIKF 75 (102)
T ss_pred hhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH---HHHhCCCCcCCEEEE
Confidence 466777775 478999999999999999999999999999875 69999999999887 999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 317 IRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 317 ~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
|++|+.+.++.|. +.++|..+|+++
T Consensus 76 ~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCcceeecCCCCHHHHHHHHHhc
Confidence 9888767889999 899999999875
No 80
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=9.9e-16 Score=120.31 Aligned_cols=95 Identities=17% Similarity=0.353 Sum_probs=83.8
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
+.+++++.+.+. +++++|+||++||++|+.+.|.|.++++++.+++.|+.+|++++++ ++++|+|+++||+++|
T Consensus 6 ~~~~~~~~i~~~---~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 6 TDSNFDKKVLNS---DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS---LAQQYGVRGFPTIKVF 79 (103)
T ss_pred CHHhHHHHHhcC---CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH---HHHHCCCCccCEEEEE
Confidence 557788887653 6789999999999999999999999999998789999999999887 9999999999999999
Q ss_pred eCC-eEEEEEeCC-ChHHHHHHH
Q 018973 318 RDG-QIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 318 ~~G-~~v~~~~G~-~~~~L~~~l 338 (348)
++| +....+.|. +.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 988 555677888 899998886
No 81
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=9.6e-16 Score=120.39 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=74.9
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
|.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|.++++++.+ +.|+.+|+++ ..+++++|+|+++||+
T Consensus 2 v~~l-~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~P~~ 76 (103)
T cd03001 2 VVEL-TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGFPTI 76 (103)
T ss_pred eEEc-CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCccCEE
Confidence 4455 78899998874 467899999999999999999999999999865 8999999998 5669999999999999
Q ss_pred EEeecc-cccccccc
Q 018973 200 SFYKSM-EKIHEEEG 213 (348)
Q Consensus 200 ~~~~~g-~~v~~~~G 213 (348)
++|++| +....+.|
T Consensus 77 ~~~~~~~~~~~~~~g 91 (103)
T cd03001 77 KVFGAGKNSPQDYQG 91 (103)
T ss_pred EEECCCCcceeecCC
Confidence 999988 33444544
No 82
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.65 E-value=2.5e-15 Score=129.73 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=87.7
Q ss_pred ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV 309 (348)
Q Consensus 230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~ 309 (348)
+..+..+.+.++|.+.+... ..+.++||+||++||++|+.+.|.|.+++.+++ .++|++||+++. . ++.+|+|.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~---l~~~f~v~ 134 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-G---ASDEFDTD 134 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-h---hHHhCCCC
Confidence 55677787768888888653 124599999999999999999999999999996 599999999986 4 99999999
Q ss_pred ccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHH
Q 018973 310 EVPTFLFIRDGQIRGRYVGS--------GKGELIGEILR 340 (348)
Q Consensus 310 ~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~ 340 (348)
.+||+++|++|+.+.++.|. +.+.|..+|.+
T Consensus 135 ~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999999998875 34556655543
No 83
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.65 E-value=8.9e-16 Score=120.70 Aligned_cols=90 Identities=23% Similarity=0.308 Sum_probs=77.0
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--C-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--D-VEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~-v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
+.++ +.++|++.++ ++++++|+|||+||++|+.+.|.++++++++. + +.|+++|+++.. ..+++++|+|+++|
T Consensus 2 ~~~l-~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~P 77 (104)
T cd02997 2 VVHL-TDEDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGFP 77 (104)
T ss_pred eEEe-chHhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCcccc
Confidence 4455 6779999887 56799999999999999999999999998875 3 889999998732 45699999999999
Q ss_pred eEEEeeccccccccccC
Q 018973 198 HFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G~ 214 (348)
|+++|++|+.+.++.|.
T Consensus 78 t~~~~~~g~~~~~~~g~ 94 (104)
T cd02997 78 TFKYFENGKFVEKYEGE 94 (104)
T ss_pred EEEEEeCCCeeEEeCCC
Confidence 99999999988877773
No 84
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.64 E-value=7.4e-16 Score=121.68 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=80.4
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEE
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~ 315 (348)
+++.+.++ .+++++|+||++||++|+.+.+.+ .++++.+.+++.++.+|+++++. ..+++++|+|.++||++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 35566654 479999999999999999999887 67888886679999999986432 35699999999999999
Q ss_pred EEe--CCeEEEEEeCC-ChHHHHHHH
Q 018973 316 FIR--DGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 316 ~~~--~G~~v~~~~G~-~~~~L~~~l 338 (348)
+|+ +|+.+.++.|. +.++|.++|
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHh
Confidence 997 79999999999 999988876
No 85
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.64 E-value=2.7e-15 Score=120.46 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=78.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEE--EEeCC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG--RYVGS 329 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~--~~~G~ 329 (348)
.+..++|+||++||++|+.+.|.+++++..+ +++.|..+|++++++ ++++|+|.++||+++|++|.... ++.|.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~---l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE---KAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH---HHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 4677999999999999999999999999887 569999999999887 99999999999999999876554 78898
Q ss_pred -ChHHHHHHHHHHhCC
Q 018973 330 -GKGELIGEILRYQGV 344 (348)
Q Consensus 330 -~~~~L~~~l~~~~~~ 344 (348)
+..+|.++|...+..
T Consensus 97 ~~~~el~~~i~~i~~~ 112 (113)
T cd02975 97 PAGYEFASLIEDIVRV 112 (113)
T ss_pred CchHHHHHHHHHHHhc
Confidence 889999999887653
No 86
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.64 E-value=1.2e-15 Score=120.50 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcC-CcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEe
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCN-DVEFILVMGDESE-KTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~-~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~ 202 (348)
++|+++++ .+++|+|+||++||++|+.+.|.+ +++++.+. ++.++.||+++.+ ...+++++|+|+++||+++|
T Consensus 2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 57888886 689999999999999999999988 67888777 5999999987633 24689999999999999999
Q ss_pred e--ccccccccccC
Q 018973 203 K--SMEKIHEEEGI 214 (348)
Q Consensus 203 ~--~g~~v~~~~G~ 214 (348)
+ +|+.+.++.|.
T Consensus 80 ~~~~g~~~~~~~G~ 93 (104)
T cd02953 80 GPGGEPEPLRLPGF 93 (104)
T ss_pred CCCCCCCCcccccc
Confidence 8 78988888774
No 87
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.64 E-value=2.7e-15 Score=118.56 Aligned_cols=93 Identities=16% Similarity=0.344 Sum_probs=79.3
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
+++++. . .+++++|.||++||++|+.+.|.|.+++++++ ..+.++.+|+++.++ ++++|+|.++||+++
T Consensus 7 ~~~~~~-~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~I~~~Pt~~l 78 (104)
T cd03000 7 DSFKDV-R----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS---IASEFGVRGYPTIKL 78 (104)
T ss_pred hhhhhh-c----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh---HHhhcCCccccEEEE
Confidence 555553 2 35799999999999999999999999999984 348999999998877 999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 317 IRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 317 ~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
|++|. ..++.|. +.++|.+++++.
T Consensus 79 ~~~~~-~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 79 LKGDL-AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EcCCC-ceeecCCCCHHHHHHHHHhh
Confidence 98774 4678888 999999999864
No 88
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.64 E-value=3.8e-15 Score=121.12 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=79.4
Q ss_pred CChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------hHHHHHHhCCC
Q 018973 237 HSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------SCMQFLRDMNV 308 (348)
Q Consensus 237 ~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------~~~~l~~~~~V 308 (348)
.+.+++.+.++ +++.++|+||++||++|+.+.|.|.+++++. ++.++.+|++.++ +..++.++|++
T Consensus 11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 35677888887 3688999999999999999999999999984 4678888887542 34567788765
Q ss_pred ----CccceEEEEeCCeEEEEEeCC--ChHHHHHHHH
Q 018973 309 ----VEVPTFLFIRDGQIRGRYVGS--GKGELIGEIL 339 (348)
Q Consensus 309 ----~~~PTl~~~~~G~~v~~~~G~--~~~~L~~~l~ 339 (348)
.++||+++|++|+.+.+..|. +.++|.+++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 459999999999999999995 6888888764
No 89
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.63 E-value=2e-15 Score=120.42 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=74.1
Q ss_pred CceEecCHHHHHHHHHh-cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHH-HcCcCC
Q 018973 120 RVKKVHSIEEFDEALRL-AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCE-REKIKK 195 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~-~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~-~~~V~~ 195 (348)
.|+++ +.++|+.++.. ..+++|+|+||++||++|+.+.|.|+++++++.+ +.|+.||+|.. ...+++ .|+|+.
T Consensus 2 ~v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~ 78 (109)
T cd02993 2 AVVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKS 78 (109)
T ss_pred cceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCc
Confidence 35566 78899988753 3579999999999999999999999999999864 89999999873 235786 599999
Q ss_pred CCeEEEeeccc-ccccccc
Q 018973 196 VPHFSFYKSME-KIHEEEG 213 (348)
Q Consensus 196 ~Pt~~~~~~g~-~v~~~~G 213 (348)
+||+++|++|. ....+.|
T Consensus 79 ~Pti~~f~~~~~~~~~y~g 97 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPS 97 (109)
T ss_pred CCEEEEEcCCCCCceeccC
Confidence 99999997753 4555555
No 90
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.62 E-value=2.7e-15 Score=122.00 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=74.6
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------hHHHHHHHcC
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------KTKELCEREK 192 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------~~~~l~~~~~ 192 (348)
...+ +.++|.+.++ .++.++|+|+++||++|+.+.|.|++++++ .++.|+.||+|..+ +..++.++|+
T Consensus 8 ~~~i-t~~~~~~~i~--~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 8 LEVT-TVVRALEALD--KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ceec-CHHHHHHHHH--cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 3444 7889999997 688899999999999999999999999998 45788888888432 3456777766
Q ss_pred c----CCCCeEEEeeccccccccccC
Q 018973 193 I----KKVPHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 193 V----~~~Pt~~~~~~g~~v~~~~G~ 214 (348)
+ .++||+++|++|+.+.+..|.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCC
Confidence 5 459999999999999988874
No 91
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.62 E-value=2.5e-15 Score=117.08 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
+.++|.+.+.+ .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|+++ ..+++++|+|..+||+++|++
T Consensus 2 ~~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcCCEEEEEeC
Confidence 56788888874 467999999999999999999999999999875 9999999998 456999999999999999999
Q ss_pred cccccccccC
Q 018973 205 MEKIHEEEGI 214 (348)
Q Consensus 205 g~~v~~~~G~ 214 (348)
|+.+..+.|.
T Consensus 78 g~~~~~~~g~ 87 (101)
T TIGR01068 78 GKEVDRSVGA 87 (101)
T ss_pred CcEeeeecCC
Confidence 9888777664
No 92
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.62 E-value=2.7e-15 Score=117.86 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=73.6
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
|.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++.+.+ +.|+++|+++. +++..+++.++|
T Consensus 2 v~~l-~~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~P 75 (104)
T cd02995 2 VKVV-VGKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGFP 75 (104)
T ss_pred eEEE-chhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCCC
Confidence 4455 78899998875 358999999999999999999999999998765 89999999873 478899999999
Q ss_pred eEEEeeccc--ccccccc
Q 018973 198 HFSFYKSME--KIHEEEG 213 (348)
Q Consensus 198 t~~~~~~g~--~v~~~~G 213 (348)
|+++|++|+ ...++.|
T Consensus 76 t~~~~~~~~~~~~~~~~g 93 (104)
T cd02995 76 TILFFPAGDKSNPIKYEG 93 (104)
T ss_pred EEEEEcCCCcCCceEccC
Confidence 999999887 4444554
No 93
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.61 E-value=1.9e-15 Score=121.30 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=67.1
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc
Q 018973 130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH 209 (348)
Q Consensus 130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~ 209 (348)
|.+.+. .++.++|+|||+||++|+.+.|.+++++++++.+.|.++|.|+ .++++++|+|+.+||+++|++|+...
T Consensus 15 ~~~~l~--~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~---~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 15 FFKEMK--NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE---DKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHhC--CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc---CHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 444454 4777999999999999999999999999998779999999998 45699999999999999999876554
Q ss_pred --cccc
Q 018973 210 --EEEG 213 (348)
Q Consensus 210 --~~~G 213 (348)
++.|
T Consensus 90 ~~~~~G 95 (113)
T cd02975 90 GIRYYG 95 (113)
T ss_pred eEEEEe
Confidence 3444
No 94
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.61 E-value=3.4e-15 Score=116.46 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=72.4
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
++..+.+ .+++|+|+||++||++|+.+.|.++++++++++ +.++++|+|+ ..+++++++|.++||+++|++|+.+
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeeccEEEEEECCeEE
Confidence 3444443 689999999999999999999999999999875 9999999998 4569999999999999999999999
Q ss_pred cccccCC
Q 018973 209 HEEEGIG 215 (348)
Q Consensus 209 ~~~~G~~ 215 (348)
.++.|..
T Consensus 81 ~~~~g~~ 87 (97)
T cd02949 81 KEISGVK 87 (97)
T ss_pred EEEeCCc
Confidence 9888854
No 95
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.60 E-value=4.4e-15 Score=116.10 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC---cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND---VEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
+.++|++.+. ++++++|+||++||++|+.+.|.|+++++.+.+ +.|+.+|+++ ..+++++|+|+.+|++++|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~P~~~~~ 76 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGFPTIKFF 76 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcCCEEEEe
Confidence 5788999986 799999999999999999999999999998864 9999999998 5679999999999999999
Q ss_pred eccccccccccC
Q 018973 203 KSMEKIHEEEGI 214 (348)
Q Consensus 203 ~~g~~v~~~~G~ 214 (348)
++|+.+.++.|.
T Consensus 77 ~~~~~~~~~~g~ 88 (102)
T TIGR01126 77 PKGKKPVDYEGG 88 (102)
T ss_pred cCCCcceeecCC
Confidence 988766667663
No 96
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.60 E-value=5.2e-15 Score=116.36 Aligned_cols=95 Identities=26% Similarity=0.505 Sum_probs=81.4
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCC-chhHHHHHHhCCCCccceE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDE-NDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~-~~~~~~l~~~~~V~~~PTl 314 (348)
+.+++++.+.. .+++++|+||++||++|+.+.|.+.++++.++ +++.++.+|+++ +++ ++++|+|.++||+
T Consensus 6 ~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~i~~~P~~ 79 (105)
T cd02998 6 TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD---LAKKYGVSGFPTL 79 (105)
T ss_pred chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh---hHHhCCCCCcCEE
Confidence 34677777654 36799999999999999999999999999986 469999999999 777 9999999999999
Q ss_pred EEEeCC-eEEEEEeCC-ChHHHHHHH
Q 018973 315 LFIRDG-QIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 315 ~~~~~G-~~v~~~~G~-~~~~L~~~l 338 (348)
++|++| +....+.|. +.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999866 666778888 888888764
No 97
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.60 E-value=5.4e-15 Score=116.11 Aligned_cols=94 Identities=27% Similarity=0.466 Sum_probs=81.4
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--cEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--TVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~ 315 (348)
+.+++++.+.+. +++++|+||++||++|+.+.|.+.++++.+++ ++.++++|+++++ ++..+++.++||++
T Consensus 6 ~~~~f~~~i~~~---~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~~~~~Pt~~ 78 (104)
T cd02995 6 VGKNFDEVVLDS---DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----VPSEFVVDGFPTIL 78 (104)
T ss_pred chhhhHHHHhCC---CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh----hhhhccCCCCCEEE
Confidence 456788887753 68999999999999999999999999999865 5999999999874 78889999999999
Q ss_pred EEeCCe--EEEEEeCC-ChHHHHHHH
Q 018973 316 FIRDGQ--IRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 316 ~~~~G~--~v~~~~G~-~~~~L~~~l 338 (348)
+|++|+ ...++.|. +.++|.+||
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999887 56778898 888888775
No 98
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.59 E-value=2.8e-15 Score=118.48 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
.++|++.. ++++++|+|||+||++|+.+.|.|+++++++. ++.++.+|+++ ..+++++|+|+++||+++|
T Consensus 6 ~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 6 DDSFKDVR---KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGYPTIKLL 79 (104)
T ss_pred hhhhhhhc---cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccccEEEEE
Confidence 36677642 47899999999999999999999999999873 38899999998 4569999999999999999
Q ss_pred ecccccccccc
Q 018973 203 KSMEKIHEEEG 213 (348)
Q Consensus 203 ~~g~~v~~~~G 213 (348)
++|. ...+.|
T Consensus 80 ~~~~-~~~~~G 89 (104)
T cd03000 80 KGDL-AYNYRG 89 (104)
T ss_pred cCCC-ceeecC
Confidence 7764 344555
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.58 E-value=6.8e-15 Score=115.67 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=73.2
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCC-chhHHHHHHHcCcCCC
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDE-SEKTKELCEREKIKKV 196 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~-~~~~~~l~~~~~V~~~ 196 (348)
+.++ +.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++. ++.|+.+|+++ .+ +++++|+|+++
T Consensus 2 ~~~l-~~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~i~~~ 76 (105)
T cd02998 2 VVEL-TDSNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYGVSGF 76 (105)
T ss_pred eEEc-chhcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCCCCCc
Confidence 3455 67899887754 46799999999999999999999999999875 38999999888 54 49999999999
Q ss_pred CeEEEeecc-cccccccc
Q 018973 197 PHFSFYKSM-EKIHEEEG 213 (348)
Q Consensus 197 Pt~~~~~~g-~~v~~~~G 213 (348)
||+++|++| +....+.|
T Consensus 77 P~~~~~~~~~~~~~~~~g 94 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEG 94 (105)
T ss_pred CEEEEEeCCCCCccccCC
Confidence 999999877 44444555
No 100
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.58 E-value=1.2e-14 Score=112.65 Aligned_cols=94 Identities=23% Similarity=0.472 Sum_probs=82.3
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~ 315 (348)
+.+++.+.+.+ +++++|+||++||++|+.+.+.+.++++.+ .+.+.|+.+|++++.. ++++|+|.++||++
T Consensus 4 ~~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~i~~~Pt~~ 76 (101)
T cd02961 4 TDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND---LCSEYGVRGYPTIK 76 (101)
T ss_pred cHHHHHHHHhC----CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH---HHHhCCCCCCCEEE
Confidence 44678888775 459999999999999999999999999999 5779999999998776 99999999999999
Q ss_pred EEeCC-eEEEEEeCC-ChHHHHHHH
Q 018973 316 FIRDG-QIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 316 ~~~~G-~~v~~~~G~-~~~~L~~~l 338 (348)
+|++| +...++.|. +.+++.+++
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 99877 788888888 888887764
No 101
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.57 E-value=1.7e-14 Score=117.72 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=80.2
Q ss_pred hhHHHHhhhcccCC-cEEEEEEeCCCChhhhhhhhHHH---HHHHHhCCcEEEEEEECCCch----------hHHHHHHh
Q 018973 240 EDVEKLIDDHKVDQ-KLIVLDVGLKHCGPCVKVYPTVI---KLSRQMAGTVVFARMNGDEND----------SCMQFLRD 305 (348)
Q Consensus 240 ~~~~~~l~~~~~~~-k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~~~~~----------~~~~l~~~ 305 (348)
+++++..+ .+ ++++|+||++||++|+.+.+.+. .+.+.+.+++.++.+|++... ...+++++
T Consensus 4 ~~~~~a~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAA----DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHH----cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 34444444 46 99999999999999999998874 566666566889999998642 12359999
Q ss_pred CCCCccceEEEEeC--CeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 306 MNVVEVPTFLFIRD--GQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 306 ~~V~~~PTl~~~~~--G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
|+|.++||++++.+ |+++.++.|. +.+++.+.|+..++
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999999988864 6999999999 88999999988754
No 102
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.57 E-value=1.7e-14 Score=111.83 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=74.2
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc---CCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC---NDVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~---~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
+.++|.+.+. ++++++|+||++||++|+.+.|.|+++++.+ .++.|+.+|+++ ..+++++|+|+.+||+++|
T Consensus 4 ~~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 4 TDDNFDELVK--DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred cHHHHHHHHh--CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCCCEEEEE
Confidence 6789999998 4559999999999999999999999999988 349999999998 6679999999999999999
Q ss_pred ecc-ccccccccC
Q 018973 203 KSM-EKIHEEEGI 214 (348)
Q Consensus 203 ~~g-~~v~~~~G~ 214 (348)
++| +...++.|.
T Consensus 79 ~~~~~~~~~~~g~ 91 (101)
T cd02961 79 PNGSKEPVKYEGP 91 (101)
T ss_pred cCCCcccccCCCC
Confidence 887 666666664
No 103
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.57 E-value=2.2e-14 Score=114.37 Aligned_cols=97 Identities=20% Similarity=0.361 Sum_probs=78.8
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCc-hhHHHHHH-hCCCCccceE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDEN-DSCMQFLR-DMNVVEVPTF 314 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~-~~~~~l~~-~~~V~~~PTl 314 (348)
+.+++++++... ..+++++|.||++||++|+++.|.+.++++.+++ .+.++.||++.+ .. +++ .|+|.++||+
T Consensus 7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti 82 (109)
T cd02993 7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTI 82 (109)
T ss_pred cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEE
Confidence 456888777531 2478999999999999999999999999999976 499999999973 44 776 4999999999
Q ss_pred EEEeCC-eEEEEEeCC--ChHHHHHHH
Q 018973 315 LFIRDG-QIRGRYVGS--GKGELIGEI 338 (348)
Q Consensus 315 ~~~~~G-~~v~~~~G~--~~~~L~~~l 338 (348)
++|++| .....|.|. +.+.|..||
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999765 566778883 888887764
No 104
>PTZ00062 glutaredoxin; Provisional
Probab=99.57 E-value=2.4e-14 Score=125.93 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=84.1
Q ss_pred cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~ 315 (348)
..+.+++.+.++. +.+.++++||++||++|+.+.|.+.+++++++ .+.|++||.+ |+|.++|||+
T Consensus 3 ~~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------~~V~~vPtfv 67 (204)
T PTZ00062 3 FIKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------DANNEYGVFE 67 (204)
T ss_pred CCCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------cCcccceEEE
Confidence 4567888888864 24778999999999999999999999999995 5999999977 8999999999
Q ss_pred EEeCCeEEEEEeCCChHHHHHHHHHHhCC
Q 018973 316 FIRDGQIRGRYVGSGKGELIGEILRYQGV 344 (348)
Q Consensus 316 ~~~~G~~v~~~~G~~~~~L~~~l~~~~~~ 344 (348)
+|++|++++++.|.+..+|...+.++.+.
T Consensus 68 ~~~~g~~i~r~~G~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 68 FYQNSQLINSLEGCNTSTLVSFIRGWAQK 96 (204)
T ss_pred EEECCEEEeeeeCCCHHHHHHHHHHHcCC
Confidence 99999999999999999999999988653
No 105
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7e-15 Score=142.65 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=141.3
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
+.+. +.++|+..+.+ .+..++|.||+|||++|+.+.|.+++++..+. .+.+.++|++. ...++.+++|+.+|
T Consensus 146 v~~l-~~~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~---~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV---HKSLASRLEVRGYP 220 (383)
T ss_pred eEEc-cccchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch---HHHHhhhhcccCCc
Confidence 5554 77888877664 57889999999999999999999999999874 38999999986 67799999999999
Q ss_pred eEEEeecccc-cccccc-CCCCcccccccccCCC---ccceeecCChh----hH---HHHhhhcccCCcEEEEEEeCCCC
Q 018973 198 HFSFYKSMEK-IHEEEG-IGPDQLMGDVLYYGDS---HSAVVQLHSKE----DV---EKLIDDHKVDQKLIVLDVGLKHC 265 (348)
Q Consensus 198 t~~~~~~g~~-v~~~~G-~~~~~l~~~v~~~~~~---~~~v~~~~s~~----~~---~~~l~~~~~~~k~vvV~F~a~wC 265 (348)
|+++|++|.. ...+.| .+.+.+...+...... ...+.+..+.+ .+ +...... ......++.|+++||
T Consensus 221 t~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~ 299 (383)
T KOG0191|consen 221 TLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWC 299 (383)
T ss_pred eEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchh
Confidence 9999998888 444444 3333333222211110 11111111111 00 1111110 123567899999999
Q ss_pred hhhhhhhhHHHHHHHH---hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC
Q 018973 266 GPCVKVYPTVIKLSRQ---MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 266 ~~C~~~~p~l~~la~~---~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~ 329 (348)
..|....|.+...+.. ....+.+.++++..... ++.+..++.+|++.++..|.......|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (383)
T KOG0191|consen 300 GHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKS---LCQKAIVRGYPTIKLYNYGKNPSNIVGL 363 (383)
T ss_pred hcccccchhHHHHHhccccccccceeeccccccccc---hhhHhhhhcCceeEeeccccccccccCc
Confidence 9999999999988887 33457888888877766 8899999999999999887655444444
No 106
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.55 E-value=3.4e-14 Score=127.91 Aligned_cols=194 Identities=19% Similarity=0.210 Sum_probs=132.1
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH----cCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ----CND--VEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~----~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+.++++..+. .+.+|+|.|||+||+-.+.+.|.+++.+++ +++ +.+.+||||. ..+++.+|.|..+||+
T Consensus 2 t~~N~~~il~--s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~---e~~ia~ky~I~KyPTl 76 (375)
T KOG0912|consen 2 TSENIDSILD--SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK---EDDIADKYHINKYPTL 76 (375)
T ss_pred ccccHHHhhc--cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch---hhHHhhhhccccCcee
Confidence 4567788887 589999999999999999999999998875 554 9999999999 5669999999999999
Q ss_pred EEeecccccc-ccccC-CCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHH
Q 018973 200 SFYKSMEKIH-EEEGI-GPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIK 277 (348)
Q Consensus 200 ~~~~~g~~v~-~~~G~-~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~ 277 (348)
.+|+||.... ++.|. ..+.|.+.+.+.. ..++.+..+.++++..... +++.++.+|-....+.-. .+.+
T Consensus 77 KvfrnG~~~~rEYRg~RsVeaL~efi~kq~--s~~i~Ef~sl~~l~n~~~p---~K~~vIgyF~~kdspey~----~~~k 147 (375)
T KOG0912|consen 77 KVFRNGEMMKREYRGQRSVEALIEFIEKQL--SDPINEFESLDQLQNLDIP---SKRTVIGYFPSKDSPEYD----NLRK 147 (375)
T ss_pred eeeeccchhhhhhccchhHHHHHHHHHHHh--ccHHHHHHhHHHHHhhhcc---ccceEEEEeccCCCchHH----HHHH
Confidence 9999999887 67773 3455554443322 2335566666777766553 367777777756555433 3566
Q ss_pred HHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE--EEEeCC--ChHHHHHHHHHH
Q 018973 278 LSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR--GRYVGS--GKGELIGEILRY 341 (348)
Q Consensus 278 la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v--~~~~G~--~~~~L~~~l~~~ 341 (348)
++.-+.++..|..--.|. .....-.+.+ +++|+.+... ..+.|. +.+++..||++.
T Consensus 148 va~~lr~dc~f~V~~gD~-------~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK 207 (375)
T KOG0912|consen 148 VASLLRDDCVFLVGFGDL-------LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK 207 (375)
T ss_pred HHHHHhhccEEEeecccc-------ccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence 666666554443221121 1111112233 3444333222 258888 899999999875
No 107
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.55 E-value=5.5e-14 Score=123.05 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=81.6
Q ss_pred ccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC
Q 018973 230 HSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV 309 (348)
Q Consensus 230 ~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~ 309 (348)
++.+..+ +.++|...+... ..+.+|||+||++||++|+.+.|.|.+++.+|+ .++|++||+++ ...+|++.
T Consensus 81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~------~~~~~~i~ 151 (192)
T cd02988 81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ------CIPNYPDK 151 (192)
T ss_pred CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH------hHhhCCCC
Confidence 4456666 456666655542 124699999999999999999999999999996 59999999975 35799999
Q ss_pred ccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHH
Q 018973 310 EVPTFLFIRDGQIRGRYVGS--------GKGELIGEILR 340 (348)
Q Consensus 310 ~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~ 340 (348)
++||+++|++|+.+.++.|. +.++|..+|.+
T Consensus 152 ~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999999999874 45566666543
No 108
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.55 E-value=6.9e-14 Score=106.29 Aligned_cols=90 Identities=33% Similarity=0.592 Sum_probs=79.6
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG 320 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G 320 (348)
++++.+.. +++++|+||++||++|+.+.+.+.++++. .+++.|+.+|+++... ++++|++.++||++++++|
T Consensus 2 ~~~~~~~~----~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~v~~~P~~~~~~~g 73 (93)
T cd02947 2 EFEELIKS----AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE---LAEEYGVRSIPTFLFFKNG 73 (93)
T ss_pred chHHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh---HHHhcCcccccEEEEEECC
Confidence 45556653 48899999999999999999999999988 4569999999998776 9999999999999999999
Q ss_pred eEEEEEeCC-ChHHHHHHH
Q 018973 321 QIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 321 ~~v~~~~G~-~~~~L~~~l 338 (348)
+.+..+.|. +.++|.++|
T Consensus 74 ~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 74 KEVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEEecCCCHHHHHHHh
Confidence 999999998 778888776
No 109
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.54 E-value=4.7e-14 Score=113.57 Aligned_cols=101 Identities=21% Similarity=0.176 Sum_probs=78.6
Q ss_pred ecCChhhHHHHhhhcccCCcEEEEEEeC-------CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHH
Q 018973 235 QLHSKEDVEKLIDDHKVDQKLIVLDVGL-------KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFL 303 (348)
Q Consensus 235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~ 303 (348)
.+.+.++|.+.+... .+++++|+||| +||++|+.+.|.+++++.++++++.|++||+++.+ ...+++
T Consensus 5 ~~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 355778888888864 57899999999 99999999999999999999867999999998742 112399
Q ss_pred HhCCCC-ccceEEEEeCCeEEEEEeCCChHHHHHH
Q 018973 304 RDMNVV-EVPTFLFIRDGQIRGRYVGSGKGELIGE 337 (348)
Q Consensus 304 ~~~~V~-~~PTl~~~~~G~~v~~~~G~~~~~L~~~ 337 (348)
++++|. ++||+++|++|+.+....-.+.+.+..+
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMF 117 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence 999998 9999999988754432222255555444
No 110
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.53 E-value=3.9e-14 Score=138.48 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCCceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcC
Q 018973 118 DERVKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
...|+++ |.++|+++++ ...+++|||+|||+||++|+.+.|.|+++++++.+ +.|++||+|..+. ...+++|+|+
T Consensus 350 ~~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~I~ 427 (463)
T TIGR00424 350 SNNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLG 427 (463)
T ss_pred CCCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcCCC
Confidence 3456665 8889999986 55799999999999999999999999999999864 8999999997431 2234789999
Q ss_pred CCCeEEEeeccc
Q 018973 195 KVPHFSFYKSME 206 (348)
Q Consensus 195 ~~Pt~~~~~~g~ 206 (348)
++||+++|++|.
T Consensus 428 ~~PTii~Fk~g~ 439 (463)
T TIGR00424 428 SFPTILFFPKHS 439 (463)
T ss_pred ccceEEEEECCC
Confidence 999999999885
No 111
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.52 E-value=3.5e-14 Score=107.92 Aligned_cols=83 Identities=31% Similarity=0.506 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK 207 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~ 207 (348)
++|++.+. .+++++|.||++||++|+.+.+.+++++++++++.|+.+|+++ ..+++++|++.++||+++|++|+.
T Consensus 1 ~~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 1 EEFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE---NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred CchHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC---ChhHHHhcCcccccEEEEEECCEE
Confidence 35777777 4599999999999999999999999999997789999999998 556999999999999999999998
Q ss_pred ccccccCC
Q 018973 208 IHEEEGIG 215 (348)
Q Consensus 208 v~~~~G~~ 215 (348)
+..+.|..
T Consensus 76 ~~~~~g~~ 83 (93)
T cd02947 76 VDRVVGAD 83 (93)
T ss_pred EEEEecCC
Confidence 88887754
No 112
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.52 E-value=5.1e-14 Score=112.52 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHhcCCCEEEEEEeC--CCCH---HHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHcCcC--C
Q 018973 125 HSIEEFDEALRLAKNKLVVVEFAA--SRSL---DSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCEREKIK--K 195 (348)
Q Consensus 125 ~s~~~f~~~l~~~~~k~vvV~F~a--~wC~---~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~~V~--~ 195 (348)
.+.++|++.+. +++.|+|.||| |||+ +|+.++|.+.+.+.+ +.+++||+++.+ +..+||++|+|+ +
T Consensus 6 L~~~nF~~~v~--~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~~g 80 (116)
T cd03007 6 LDTVTFYKVIP--KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDKES 80 (116)
T ss_pred CChhhHHHHHh--cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCcCC
Confidence 38999999998 78999999999 9999 888888777765543 899999996422 157899999999 9
Q ss_pred CCeEEEeeccc--ccccccc
Q 018973 196 VPHFSFYKSME--KIHEEEG 213 (348)
Q Consensus 196 ~Pt~~~~~~g~--~v~~~~G 213 (348)
+||+++|++|+ ....+.|
T Consensus 81 yPTl~lF~~g~~~~~~~Y~G 100 (116)
T cd03007 81 YPVIYLFHGGDFENPVPYSG 100 (116)
T ss_pred CCEEEEEeCCCcCCCccCCC
Confidence 99999999985 3344555
No 113
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.51 E-value=6.2e-14 Score=114.45 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCC-CEEEEEEeCCCCHHHHhhhhHHH---HHHHHcC-CcEEEEEeCCCch----------hHHHHHHHc
Q 018973 127 IEEFDEALRLAKN-KLVVVEFAASRSLDSSKIYPFMV---DLSRQCN-DVEFILVMGDESE----------KTKELCERE 191 (348)
Q Consensus 127 ~~~f~~~l~~~~~-k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~-~v~f~~vd~d~~~----------~~~~l~~~~ 191 (348)
.++++++++ .+ ++|+|+|||+||++|+.+.|.+. ++.+.+. ++.++.||+++.. ...+++.+|
T Consensus 3 ~~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 3 YEDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 467777776 57 99999999999999999999884 5555554 4889999988631 136799999
Q ss_pred CcCCCCeEEEeec--cccccccccCC
Q 018973 192 KIKKVPHFSFYKS--MEKIHEEEGIG 215 (348)
Q Consensus 192 ~V~~~Pt~~~~~~--g~~v~~~~G~~ 215 (348)
+|+++||++|+.+ |+.+.++.|..
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~ 106 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYL 106 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCC
Confidence 9999999999975 58888888853
No 114
>PLN02309 5'-adenylylsulfate reductase
Probab=99.50 E-value=1e-13 Score=135.47 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCCCceEecCHHHHHHHHH-hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC-CchhHHHHHH-Hc
Q 018973 117 RDERVKKVHSIEEFDEALR-LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD-ESEKTKELCE-RE 191 (348)
Q Consensus 117 ~~~~v~~v~s~~~f~~~l~-~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d-~~~~~~~l~~-~~ 191 (348)
..+.|+++ +.++|++++. ...+++|||+|||+||++|+.+.|.|+++++++.+ +.|++||+| + ..++++ +|
T Consensus 343 ~~~~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~ 418 (457)
T PLN02309 343 NSQNVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQEL 418 (457)
T ss_pred CCCCcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhC
Confidence 33466666 8899999875 34689999999999999999999999999999854 999999999 5 456886 69
Q ss_pred CcCCCCeEEEeecccc
Q 018973 192 KIKKVPHFSFYKSMEK 207 (348)
Q Consensus 192 ~V~~~Pt~~~~~~g~~ 207 (348)
+|+++|||++|++|..
T Consensus 419 ~I~~~PTil~f~~g~~ 434 (457)
T PLN02309 419 QLGSFPTILLFPKNSS 434 (457)
T ss_pred CCceeeEEEEEeCCCC
Confidence 9999999999998753
No 115
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.7e-13 Score=119.12 Aligned_cols=189 Identities=20% Similarity=0.316 Sum_probs=135.9
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+|+.+...++| ... +++..++.|||+||.+|+++...++.+++..+++.|++++.++ ..+++..+.|..+|++
T Consensus 2 ~v~~i~~~~~f--~~~--~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~---~~eis~~~~v~~vp~~ 74 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LDQ--KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE---FPEISNLIAVEAVPYF 74 (227)
T ss_pred CceeehhHHHH--HHh--ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh---hhHHHHHHHHhcCcee
Confidence 57788888899 433 7999999999999999999999999999999889999999999 6679999999999999
Q ss_pred EEeeccccccccccCCCCcccccccccCCCc---------cceeecC--ChhhHHHHhhhcccCCcEEEEEE-eC---CC
Q 018973 200 SFYKSMEKIHEEEGIGPDQLMGDVLYYGDSH---------SAVVQLH--SKEDVEKLIDDHKVDQKLIVLDV-GL---KH 264 (348)
Q Consensus 200 ~~~~~g~~v~~~~G~~~~~l~~~v~~~~~~~---------~~v~~~~--s~~~~~~~l~~~~~~~k~vvV~F-~a---~w 264 (348)
+++..|+.+.+..|.++..+...+..+.... ..+.+.. ....++..+...- +.++++++. +. |-
T Consensus 75 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv-~a~~v~lFmKG~p~~P~ 153 (227)
T KOG0911|consen 75 VFFFLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLV-KAKPVMLFMKGTPEEPK 153 (227)
T ss_pred eeeecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhc-ccCeEEEEecCCCCccc
Confidence 9999999999999988766554433321111 1111110 0011333333321 234444433 33 56
Q ss_pred ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE-EEEeCCeEEE
Q 018973 265 CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF-LFIRDGQIRG 324 (348)
Q Consensus 265 C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl-~~~~~G~~v~ 324 (348)
|+..+++...|. .+ ++.|...|+-.++++++..+.| ..+||| .+|-+|+.++
T Consensus 154 CGFS~~~v~iL~----~~--nV~~~~fdIL~DeelRqglK~f--SdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 154 CGFSRQLVGILQ----SH--NVNYTIFDVLTDEELRQGLKEF--SDWPTFPQLYVKGEFIG 206 (227)
T ss_pred ccccHHHHHHHH----Hc--CCCeeEEeccCCHHHHHHhhhh--cCCCCccceeECCEecc
Confidence 666666544443 33 3678999999888877777776 789998 8888998764
No 116
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.47 E-value=9.4e-14 Score=112.14 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=63.7
Q ss_pred HHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCC--CCeEEEee
Q 018973 129 EFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKK--VPHFSFYK 203 (348)
Q Consensus 129 ~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~--~Pt~~~~~ 203 (348)
++++.++.+ ++++|+|+|||+||++|+.+.|.+.+....+. +..|+.||+|..++ .+.++|++.+ +||++|+.
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRILFLD 84 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEEEEC
Confidence 355555433 48999999999999999999999999876543 35677777776432 3456899986 99999995
Q ss_pred -cccccccccc
Q 018973 204 -SMEKIHEEEG 213 (348)
Q Consensus 204 -~g~~v~~~~G 213 (348)
+|+.+.++.+
T Consensus 85 ~~Gk~~~~~~~ 95 (117)
T cd02959 85 PSGDVHPEIIN 95 (117)
T ss_pred CCCCCchhhcc
Confidence 8999886555
No 117
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.47 E-value=5.3e-13 Score=100.31 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=70.3
Q ss_pred EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHH
Q 018973 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGEL 334 (348)
Q Consensus 256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L 334 (348)
.+..||++||++|+.+.+.+++++++++..+.++.||.+++++ ++++|++.++||+++ +|+. ++.|. +.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ---KAMEYGIMAVPAIVI--NGDV--EFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH---HHHHcCCccCCEEEE--CCEE--EEecCCCHHHH
Confidence 4678999999999999999999999987779999999998887 899999999999986 7763 77898 89999
Q ss_pred HHHHHHH
Q 018973 335 IGEILRY 341 (348)
Q Consensus 335 ~~~l~~~ 341 (348)
.++|++.
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998865
No 118
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.47 E-value=1.6e-13 Score=110.28 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=70.6
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
+.++|++.+.+. +++++|+||++||++|+.+.|.|.++++.++ +.+.|+.+|++... ..+++++|+|+++||+
T Consensus 7 ~~~~f~~~i~~~---~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 7 DAASFNSALLGS---PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGYPTL 82 (114)
T ss_pred CHHhHHHHHhcC---CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCCCEE
Confidence 567888888764 5899999999999999999999999999874 34899999976422 1239999999999999
Q ss_pred EEEeCCeEEEEEeCC
Q 018973 315 LFIRDGQIRGRYVGS 329 (348)
Q Consensus 315 ~~~~~G~~v~~~~G~ 329 (348)
++|++|. .....|.
T Consensus 83 ~lf~~~~-~~~~~~~ 96 (114)
T cd02992 83 RYFPPFS-KEATDGL 96 (114)
T ss_pred EEECCCC-ccCCCCC
Confidence 9999887 3333444
No 119
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.9e-13 Score=133.10 Aligned_cols=107 Identities=19% Similarity=0.398 Sum_probs=94.1
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCC
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNV 308 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V 308 (348)
.+..+ +.++|+..+.. +..++|.||||||++|+++.|.+.+.+..+.+ .+..++||++++.+ +|.+|+|
T Consensus 26 ~Vl~L-t~dnf~~~i~~----~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~---~~~~y~v 97 (493)
T KOG0190|consen 26 DVLVL-TKDNFKETING----HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD---LASKYEV 97 (493)
T ss_pred ceEEE-ecccHHHHhcc----CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh---hHhhhcC
Confidence 34444 56889999985 58899999999999999999999999999864 58999999999876 9999999
Q ss_pred CccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973 309 VEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVRV 346 (348)
Q Consensus 309 ~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~ 346 (348)
+++||+.+|++|+....|.|. +.+.+..||.+..|...
T Consensus 98 ~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred CCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence 999999999999987788888 99999999999887643
No 120
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.45 E-value=3.4e-13 Score=105.91 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=78.3
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC--ccceEEEEeC--CeEEEEEeC
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV--EVPTFLFIRD--GQIRGRYVG 328 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~--~~PTl~~~~~--G~~v~~~~G 328 (348)
++++++.|+++||++|+.+.+.++++++++++++.|+.+|++++++ +++.|++. ++|+++++++ |+......|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~---~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR---HLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH---HHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 5899999999999999999999999999999889999999999887 99999999 9999999988 766665566
Q ss_pred C-ChHHHHHHHHHH
Q 018973 329 S-GKGELIGEILRY 341 (348)
Q Consensus 329 ~-~~~~L~~~l~~~ 341 (348)
. +.++|.++++++
T Consensus 89 ~~~~~~l~~fi~~~ 102 (103)
T cd02982 89 ELTAESLEEFVEDF 102 (103)
T ss_pred ccCHHHHHHHHHhh
Confidence 6 899999999875
No 121
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=7e-13 Score=131.26 Aligned_cols=101 Identities=17% Similarity=0.417 Sum_probs=89.6
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
+.+++++.+.+ +++++|.||++||++|+.+.|.+.++++.+.+ ++.|+.||++++.+ ++++|+|.++||+
T Consensus 7 ~~~~~~~~i~~----~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 7 TKDNFDDFIKS----HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD---LAQKYGVSGYPTL 79 (462)
T ss_pred CHHHHHHHHhc----CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH---HHHhCCCccccEE
Confidence 56788888864 67899999999999999999999999888743 49999999999887 9999999999999
Q ss_pred EEEeCCeE-EEEEeCC-ChHHHHHHHHHHhCCC
Q 018973 315 LFIRDGQI-RGRYVGS-GKGELIGEILRYQGVR 345 (348)
Q Consensus 315 ~~~~~G~~-v~~~~G~-~~~~L~~~l~~~~~~~ 345 (348)
++|++|+. +.++.|. +.+.|.+++.+.++..
T Consensus 80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred EEEeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 99999988 7888998 9999999999987644
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=99.44 E-value=7.9e-13 Score=131.80 Aligned_cols=105 Identities=21% Similarity=0.442 Sum_probs=90.9
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCCCC
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMNVV 309 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~V~ 309 (348)
+..+ +.+++++.+.+ ++.++|+||++||++|+++.|.+.++++.+. .++.|+.+|++++.+ ++++|+|.
T Consensus 34 v~~l-~~~~f~~~i~~----~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~---l~~~~~i~ 105 (477)
T PTZ00102 34 VTVL-TDSTFDKFITE----NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME---LAQEFGVR 105 (477)
T ss_pred cEEc-chhhHHHHHhc----CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH---HHHhcCCC
Confidence 3444 55788888764 5789999999999999999999999987763 359999999999887 99999999
Q ss_pred ccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973 310 EVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGVRV 346 (348)
Q Consensus 310 ~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~ 346 (348)
++||+++|++|+.+ ++.|. +.+.|.+++.++.+..+
T Consensus 106 ~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 106 GYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred cccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 99999999999877 88898 99999999999987644
No 123
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=3.9e-13 Score=130.62 Aligned_cols=212 Identities=14% Similarity=0.241 Sum_probs=131.0
Q ss_pred CCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---C-cEEEEEeCCCchhHHHHHHHcC
Q 018973 117 RDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---D-VEFILVMGDESEKTKELCEREK 192 (348)
Q Consensus 117 ~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~-v~f~~vd~d~~~~~~~l~~~~~ 192 (348)
.++.+.++ +.+.|...+... .+..+|+||++|||+|++++|.++++++... . +.+..|||-+.. +..+|++|+
T Consensus 37 ~~D~ii~L-d~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~ 113 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFS 113 (606)
T ss_pred CCCCeEEe-ehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcC
Confidence 33677777 899999998753 4689999999999999999999999999754 3 789999987644 678999999
Q ss_pred cCCCCeEEEeeccccc----cccccCC-CCccccccc----------ccC--CCccceeecCChhhHHHHhhhcccCCcE
Q 018973 193 IKKVPHFSFYKSMEKI----HEEEGIG-PDQLMGDVL----------YYG--DSHSAVVQLHSKEDVEKLIDDHKVDQKL 255 (348)
Q Consensus 193 V~~~Pt~~~~~~g~~v----~~~~G~~-~~~l~~~v~----------~~~--~~~~~v~~~~s~~~~~~~l~~~~~~~k~ 255 (348)
|+.+||+.+|..+-.- ..+.|.. +.++.+... .++ .+..++.+..+.+++.+.+.. ....
T Consensus 114 V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~---~~~y 190 (606)
T KOG1731|consen 114 VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGIST---TANY 190 (606)
T ss_pred CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccc---ccce
Confidence 9999999999643211 1122211 112111111 111 011123333333333333332 2334
Q ss_pred EEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEE-EEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-Ch
Q 018973 256 IVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFA-RMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GK 331 (348)
Q Consensus 256 vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~-~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~ 331 (348)
+.+.|- .+.- --+..+...++ +.+.+. ..|....+ +.+ +++...|+.+++++|+........ +.
T Consensus 191 vAiv~e~~~s~-------lg~~~~l~~l~~~~v~vr~~~d~q~~~----~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~ 258 (606)
T KOG1731|consen 191 VAIVFETEPSD-------LGWANLLNDLPSKQVGVRARLDTQNFP----LFG-LKPDNFPLALLFRNGEQQPLWPSSSSR 258 (606)
T ss_pred eEEEEecCCcc-------cHHHHHHhhccCCCcceEEEecchhcc----ccc-cCCCCchhhhhhcCCcccccccccccH
Confidence 444442 2211 11344444442 123333 33444444 455 899999999999999876554444 67
Q ss_pred HHHHHHHHHHhCCCC
Q 018973 332 GELIGEILRYQGVRV 346 (348)
Q Consensus 332 ~~L~~~l~~~~~~~~ 346 (348)
+...+.|.+++|.+.
T Consensus 259 ~~y~~~I~~~lg~~~ 273 (606)
T KOG1731|consen 259 SAYVKKIDDLLGDKN 273 (606)
T ss_pred HHHHHHHHHHhcCcc
Confidence 788888888887653
No 124
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.43 E-value=9.7e-13 Score=128.72 Aligned_cols=105 Identities=20% Similarity=0.358 Sum_probs=83.4
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHH-HhCCCCc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFL-RDMNVVE 310 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~-~~~~V~~ 310 (348)
+..+ +.++|++.++. ...+++++|+||++||++|+.+.|.|++++++++++ +.|++||++.++. +++ ++|+|.+
T Consensus 353 Vv~L-~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~ 428 (463)
T TIGR00424 353 VVSL-SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGS 428 (463)
T ss_pred eEEC-CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCc
Confidence 4444 55688988752 125899999999999999999999999999999754 8999999987542 144 6899999
Q ss_pred cceEEEEeCCe-EEEEEe-CC-ChHHHHHHHHHH
Q 018973 311 VPTFLFIRDGQ-IRGRYV-GS-GKGELIGEILRY 341 (348)
Q Consensus 311 ~PTl~~~~~G~-~v~~~~-G~-~~~~L~~~l~~~ 341 (348)
+||+++|++|. ....|. |. +.+.|..||+.+
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999885 334565 45 999999998754
No 125
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.42 E-value=1.8e-13 Score=110.50 Aligned_cols=99 Identities=16% Similarity=0.273 Sum_probs=71.5
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc--cceEEEEe
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE--VPTFLFIR 318 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~--~PTl~~~~ 318 (348)
++++.++.+...+++++|+||++||++|+.+.|.+.+..........|+.+|++..++ ...++|++.+ +||++++.
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRILFLD 84 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEEEEC
Confidence 3556666555578999999999999999999999988766543334566677765542 1567899986 99999995
Q ss_pred -CCeEEEEE---eCC-ChHHHHHHHHHH
Q 018973 319 -DGQIRGRY---VGS-GKGELIGEILRY 341 (348)
Q Consensus 319 -~G~~v~~~---~G~-~~~~L~~~l~~~ 341 (348)
+|+++.++ .|. +...+...|...
T Consensus 85 ~~Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 85 PSGDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCCCchhhccCCCCccccccCCCHHHH
Confidence 99998754 444 555555555544
No 126
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.42 E-value=9.4e-13 Score=133.49 Aligned_cols=110 Identities=19% Similarity=0.362 Sum_probs=92.1
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCch-hHHHHHHhCC
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEND-SCMQFLRDMN 307 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~ 307 (348)
....+.+.+++++.+++++..+|+++|+||++||++|+.+.+.+ .++.++++ ++.++++|+++++ +.++++++|+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcC
Confidence 35567788999999887666689999999999999999998865 67777775 5889999998753 4467999999
Q ss_pred CCccceEEEEe-CCeE--EEEEeCC-ChHHHHHHHHHHh
Q 018973 308 VVEVPTFLFIR-DGQI--RGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 308 V~~~PTl~~~~-~G~~--v~~~~G~-~~~~L~~~l~~~~ 342 (348)
+.++||+++|+ +|++ +.++.|. +.+++.+++++..
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99999999995 8988 4788998 9999999998764
No 127
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.42 E-value=1.1e-11 Score=125.81 Aligned_cols=200 Identities=13% Similarity=0.159 Sum_probs=145.9
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS 200 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 200 (348)
+..-...+++++.+.+..+...++.|+.+.|..|..+...|++++...+.+.+...|.++ .++++++|+|...|+|.
T Consensus 348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~---~~~~~~~~~v~~~P~~~ 424 (555)
T TIGR03143 348 LLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE---EPESETLPKITKLPTVA 424 (555)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc---chhhHhhcCCCcCCEEE
Confidence 333344566777787766777788898889999999999999999776668888888776 45689999999999999
Q ss_pred Eee-ccccc-cccccCC----CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH
Q 018973 201 FYK-SMEKI-HEEEGIG----PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT 274 (348)
Q Consensus 201 ~~~-~g~~v-~~~~G~~----~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~ 274 (348)
+++ +|+.. -+|.|.. ...+...+...+.....+ + ++..+.++.. ++...+-.|.+++|++|......
T Consensus 425 i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l----~-~~~~~~i~~~--~~~~~i~v~~~~~C~~Cp~~~~~ 497 (555)
T TIGR03143 425 LLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQPL----G-EELLEKIKKI--TKPVNIKIGVSLSCTLCPDVVLA 497 (555)
T ss_pred EEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCCCC----C-HHHHHHHHhc--CCCeEEEEEECCCCCCcHHHHHH
Confidence 985 55432 3455532 223443333333322222 2 3333444432 33444556689999999999999
Q ss_pred HHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973 275 VIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 275 l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l 338 (348)
+++++.+.+ ++..-.+|..++++ ++++|+|.++|++++ ||+.+ +.|. +.+++.++|
T Consensus 498 ~~~~~~~~~-~i~~~~i~~~~~~~---~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 498 AQRIASLNP-NVEAEMIDVSHFPD---LKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred HHHHHHhCC-CceEEEEECcccHH---HHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence 999998875 59999999999988 999999999999988 77754 4587 888888775
No 128
>PHA02125 thioredoxin-like protein
Probab=99.42 E-value=4.8e-13 Score=99.30 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=54.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGP 216 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~ 216 (348)
+++|||+||++|+.+.|.|+++. +.+++||.++ ..+++++|+|+++||++ +|+.++++.|.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~---~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDE---GVELTAKHHIRSLPTLV---NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCC---CHHHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence 78999999999999999998763 4688999888 55799999999999987 6788888888643
No 129
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.42 E-value=9.3e-13 Score=133.54 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=80.6
Q ss_pred CCCceEecCHHHHHHHHHhcC--CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCCcEEEEEeCCCc-hhHHHHHHHc
Q 018973 118 DERVKKVHSIEEFDEALRLAK--NKLVVVEFAASRSLDSSKIYPFM---VDLSRQCNDVEFILVMGDES-EKTKELCERE 191 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~~--~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~v~f~~vd~d~~-~~~~~l~~~~ 191 (348)
.....++.+.+++++.+++++ +|+|+|+|||+||++|+.+++.. +++.++++++.++++|+++. ++..+++++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 346788889999999987643 79999999999999999999875 67788888899999998864 3457899999
Q ss_pred CcCCCCeEEEee-ccccc--ccccc
Q 018973 192 KIKKVPHFSFYK-SMEKI--HEEEG 213 (348)
Q Consensus 192 ~V~~~Pt~~~~~-~g~~v--~~~~G 213 (348)
+|.++||+++|+ +|+++ .++.|
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G 555 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTG 555 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccC
Confidence 999999999996 78774 55556
No 130
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.41 E-value=2e-12 Score=115.64 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=74.3
Q ss_pred CcEEEEEEeC---CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEE-EEe
Q 018973 253 QKLIVLDVGL---KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRG-RYV 327 (348)
Q Consensus 253 ~k~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~-~~~ 327 (348)
+...++.|++ +||++|+.+.|.+++++++++. .+.++.+|.+++++ ++++|+|.++||+++|++|+.+. ++.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~---l~~~~~V~~~Pt~~~f~~g~~~~~~~~ 95 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE---EAEKYGVERVPTTIILEEGKDGGIRYT 95 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH---HHHHcCCCccCEEEEEeCCeeeEEEEe
Confidence 4445666877 9999999999999999999853 24566666667777 99999999999999999999984 899
Q ss_pred CC-ChHHHHHHHHHHhCC
Q 018973 328 GS-GKGELIGEILRYQGV 344 (348)
Q Consensus 328 G~-~~~~L~~~l~~~~~~ 344 (348)
|. +.++|.++|+.+++.
T Consensus 96 G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 96 GIPAGYEFAALIEDIVRV 113 (215)
T ss_pred ecCCHHHHHHHHHHHHHh
Confidence 99 888999999888643
No 131
>PLN02309 5'-adenylylsulfate reductase
Probab=99.41 E-value=1.7e-12 Score=126.92 Aligned_cols=104 Identities=19% Similarity=0.333 Sum_probs=83.4
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC-CchhHHHHHH-hCCCC
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD-ENDSCMQFLR-DMNVV 309 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~-~~~~~~~l~~-~~~V~ 309 (348)
+..+ +.+++++++... ..+++++|+||++||++|+.+.|.|.++++++.+ .+.|+++|++ .+.+ +++ +|+|.
T Consensus 347 Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~ 421 (457)
T PLN02309 347 VVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLG 421 (457)
T ss_pred cEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCc
Confidence 4443 567888877521 2588999999999999999999999999999865 4999999999 5554 776 69999
Q ss_pred ccceEEEEeCCe-EEEEEeC-C-ChHHHHHHHHHH
Q 018973 310 EVPTFLFIRDGQ-IRGRYVG-S-GKGELIGEILRY 341 (348)
Q Consensus 310 ~~PTl~~~~~G~-~v~~~~G-~-~~~~L~~~l~~~ 341 (348)
++||+++|++|. ....|.| . +.+.|..||+.+
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999998775 3345554 4 999999999864
No 132
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.38 E-value=8.3e-13 Score=118.83 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=82.5
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
+++++..++. .++..++|.||+|||++|+++.|.|.++.-++++ -++++++|++..+. ++.+|+|+++||+.+
T Consensus 31 eDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a---iAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 31 EDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA---IANEFGIQGYPTIKF 106 (468)
T ss_pred hhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh---hHhhhccCCCceEEE
Confidence 3344444433 2578999999999999999999999999877643 38999999999998 999999999999999
Q ss_pred EeCCeEEEEEeCCChHHHHHHHHHHhC
Q 018973 317 IRDGQIRGRYVGSGKGELIGEILRYQG 343 (348)
Q Consensus 317 ~~~G~~v~~~~G~~~~~L~~~l~~~~~ 343 (348)
+++|..+....|..++.++++-.+..+
T Consensus 107 ~kgd~a~dYRG~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 107 FKGDHAIDYRGGREKDAIIEFAHRCAA 133 (468)
T ss_pred ecCCeeeecCCCccHHHHHHHHHhccc
Confidence 999987765555599999999887654
No 133
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.37 E-value=2.2e-12 Score=103.12 Aligned_cols=96 Identities=10% Similarity=0.101 Sum_probs=73.6
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeC--CCCh---hhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--HHHHHHhCCCC-
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGL--KHCG---PCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--CMQFLRDMNVV- 309 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a--~wC~---~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--~~~l~~~~~V~- 309 (348)
+.++|++.+.. .+.++|.||+ |||+ .|+++.|.+.+.+ +.+.++.||+++..+ .++|+++|+|+
T Consensus 7 ~~~nF~~~v~~----~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 7 DTVTFYKVIPK----FKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred ChhhHHHHHhc----CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhHHHHHHhCCCc
Confidence 56789998875 5889999999 8888 6666665555433 248899999954221 23499999999
Q ss_pred -ccceEEEEeCCe--EEEEEeCC--ChHHHHHHHHHH
Q 018973 310 -EVPTFLFIRDGQ--IRGRYVGS--GKGELIGEILRY 341 (348)
Q Consensus 310 -~~PTl~~~~~G~--~v~~~~G~--~~~~L~~~l~~~ 341 (348)
++||+.+|++|+ ....|.|. +.+.|.++|.++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999985 33567773 899999999875
No 134
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.36 E-value=2e-12 Score=103.19 Aligned_cols=87 Identities=24% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHH---HHHHhCCcEEEEEEECCCch-----------------hHHHHHHhCCCCcc
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIK---LSRQMAGTVVFARMNGDEND-----------------SCMQFLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~~~~v~~~~vd~~~~~-----------------~~~~l~~~~~V~~~ 311 (348)
.+++++++||++||++|+++.+.+.+ +...+.+++.++.++++... ...+++++|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 68999999999999999999988875 44445456888888887543 12469999999999
Q ss_pred ceEEEEe-CCeEEEEEeCC-ChHHHHHHH
Q 018973 312 PTFLFIR-DGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 312 PTl~~~~-~G~~v~~~~G~-~~~~L~~~l 338 (348)
||++++. +|+++.++.|. ++++|.+.|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999995 89999999999 999998765
No 135
>PHA02125 thioredoxin-like protein
Probab=99.36 E-value=5.8e-12 Score=93.45 Aligned_cols=70 Identities=19% Similarity=0.423 Sum_probs=58.5
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGEL 334 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~L 334 (348)
+++||++||++|+.+.|.|.++. +.++.+|.+++.+ ++++|+|.++||++ +|+.+.++.|. +..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~---l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE---LTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH---HHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987652 4688999888776 99999999999987 78888999998 33555
Q ss_pred HHHH
Q 018973 335 IGEI 338 (348)
Q Consensus 335 ~~~l 338 (348)
.+.|
T Consensus 70 ~~~~ 73 (75)
T PHA02125 70 KEKL 73 (75)
T ss_pred HHHh
Confidence 5543
No 136
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.34 E-value=5e-12 Score=105.56 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=60.1
Q ss_pred HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---------CcEEEEEeCCCchh---------------------
Q 018973 134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---------DVEFILVMGDESEK--------------------- 183 (348)
Q Consensus 134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---------~v~f~~vd~d~~~~--------------------- 183 (348)
+++.++++|+|+|||+||+||+...|.|.++++++. ++.++.|+.|+..+
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 344579999999999999999999999999876442 48899999886421
Q ss_pred -HHHHHHHcCcCCCCeEEEee-cccccc
Q 018973 184 -TKELCEREKIKKVPHFSFYK-SMEKIH 209 (348)
Q Consensus 184 -~~~l~~~~~V~~~Pt~~~~~-~g~~v~ 209 (348)
...++++|+|.++||.+++. +|+.+.
T Consensus 100 ~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 100 FRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 13688899999999977764 777765
No 137
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.34 E-value=2.9e-12 Score=100.57 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC--CCCeEEEeec--ccccc
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK--KVPHFSFYKS--MEKIH 209 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~--~~Pt~~~~~~--g~~v~ 209 (348)
++++++.|+++||++|+.+.|.+++++++|.+ +.|+.||+++ ..++++.|||. .+|+++++++ |+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEecccccccC
Confidence 68999999999999999999999999999977 9999999999 55699999999 9999999998 65544
No 138
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.31 E-value=9.4e-12 Score=102.26 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=60.3
Q ss_pred cCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCch---------------------hHHHHHHHc
Q 018973 137 AKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESE---------------------KTKELCERE 191 (348)
Q Consensus 137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~---------------------~~~~l~~~~ 191 (348)
.++++|+|+||++||++|+.+.|.+.++++++. ++.++.|++|... ....+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 368999999999999999999999999988763 4777777777532 124688999
Q ss_pred CcCCCCeEEEee-ccccccc
Q 018973 192 KIKKVPHFSFYK-SMEKIHE 210 (348)
Q Consensus 192 ~V~~~Pt~~~~~-~g~~v~~ 210 (348)
+|.++|+++++. +|+.+.+
T Consensus 96 ~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCCEEEEECCCCCEEcc
Confidence 999999988885 7877754
No 139
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.29 E-value=2.8e-11 Score=105.66 Aligned_cols=88 Identities=26% Similarity=0.312 Sum_probs=70.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHH-------------------HHHhCCCCcc
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQ-------------------FLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~-------------------l~~~~~V~~~ 311 (348)
.+++++|+||++||++|+++.|.+.++.++ .+.++.|+.++.. +.++ +.+.|++.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 478999999999999999999999998653 4778888875432 2221 3446889999
Q ss_pred c-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 312 P-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 312 P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
| |+++.++|+++.++.|. ++++|.+.|+.++
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 9 56666899999999999 8888888888765
No 140
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.29 E-value=1.4e-11 Score=101.55 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=60.5
Q ss_pred hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCch----------------------hHHHHHH
Q 018973 136 LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDESE----------------------KTKELCE 189 (348)
Q Consensus 136 ~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~~----------------------~~~~l~~ 189 (348)
+.++++|+|+||++||++|+...|.|+++++++. ++.++.|++|+.+ ....+.+
T Consensus 14 ~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 14 ALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred HhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 3368999999999999999999999999988764 4778888777532 1235777
Q ss_pred HcCcCCCCeEEEee-cccccccc
Q 018973 190 REKIKKVPHFSFYK-SMEKIHEE 211 (348)
Q Consensus 190 ~~~V~~~Pt~~~~~-~g~~v~~~ 211 (348)
.|+|.++||++++. +|+.+.+.
T Consensus 94 ~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HcCCCCCCEEEEECCCCCEEchh
Confidence 89999999988885 77776543
No 141
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.29 E-value=8.1e-12 Score=93.80 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=55.6
Q ss_pred EEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973 142 VVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G 213 (348)
.|..||++||++|+.+.|.+++++++++. +.+++||.++ ..+++++|||+++||+++ +|+. ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~vPt~~~--~g~~--~~~G 67 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAVPAIVI--NGDV--EFIG 67 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccCCEEEE--CCEE--EEec
Confidence 46789999999999999999999999865 8999999988 456899999999999986 6652 4555
No 142
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.29 E-value=1.3e-11 Score=100.85 Aligned_cols=78 Identities=17% Similarity=0.080 Sum_probs=63.0
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------------------hhHHHHHHHcCcCCCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------------------EKTKELCEREKIKKVP 197 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------------------~~~~~l~~~~~V~~~P 197 (348)
++++++|+||++||++|+...|.|+++.+++ ++.++.|+.++. +...++++.|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 5899999999999999999999999999887 478887775321 1234678889999999
Q ss_pred e-EEEeeccccccccccCCC
Q 018973 198 H-FSFYKSMEKIHEEEGIGP 216 (348)
Q Consensus 198 t-~~~~~~g~~v~~~~G~~~ 216 (348)
+ +++.++|+.+.++.|...
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred eEEEECCCceEEEEEeccCC
Confidence 5 556679999998888543
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.28 E-value=2.5e-11 Score=90.24 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=59.6
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGEL 334 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~L 334 (348)
.|.||++||++|+.+.|.+++++++++.++.++.+| + .+ .+.+|++.++||+++ ||+.+ +.|. +.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~---~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MN---EILEAGVTATPGVAV--DGELV--IMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HH---HHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHH
Confidence 378999999999999999999999997778888777 2 22 477899999999999 99877 6775 55777
Q ss_pred HHHH
Q 018973 335 IGEI 338 (348)
Q Consensus 335 ~~~l 338 (348)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7665
No 144
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.28 E-value=8.6e-12 Score=112.60 Aligned_cols=99 Identities=19% Similarity=0.391 Sum_probs=86.9
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-----CcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-----GTVVFARMNGDENDSCMQFLRDMNVVEVPT 313 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-----~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT 313 (348)
.++.+.++.. +..++|.|||+||+..+.+.|.+++.+..++ +++.+++||+++++. ++.+|.|..+||
T Consensus 3 ~~N~~~il~s----~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~---ia~ky~I~KyPT 75 (375)
T KOG0912|consen 3 SENIDSILDS----NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD---IADKYHINKYPT 75 (375)
T ss_pred cccHHHhhcc----ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH---HhhhhccccCce
Confidence 3556677763 6999999999999999999999999887763 569999999999988 999999999999
Q ss_pred EEEEeCCeEEE-EEeCC-ChHHHHHHHHHHhCC
Q 018973 314 FLFIRDGQIRG-RYVGS-GKGELIGEILRYQGV 344 (348)
Q Consensus 314 l~~~~~G~~v~-~~~G~-~~~~L~~~l~~~~~~ 344 (348)
+-+|++|.... .|.|. +.+.|.++|++.+..
T Consensus 76 lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred eeeeeccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 99999999887 57788 999999999987653
No 145
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.26 E-value=3.7e-11 Score=92.93 Aligned_cols=68 Identities=29% Similarity=0.402 Sum_probs=55.5
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC---CcEEEEEeCCCch----------------------hHHHHHHHcCc
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCN---DVEFILVMGDESE----------------------KTKELCEREKI 193 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~v~f~~vd~d~~~----------------------~~~~l~~~~~V 193 (348)
||+++|+|||+||++|+...|.|.++.++|+ ++.|+.|..|+.. ...++.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 5999999988641 23578889999
Q ss_pred CCCCeEEEee-ccc
Q 018973 194 KKVPHFSFYK-SME 206 (348)
Q Consensus 194 ~~~Pt~~~~~-~g~ 206 (348)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999988775 454
No 146
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.26 E-value=8.2e-11 Score=95.68 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=60.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHH-----HhCCCCccceEEEE-eCCeE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFL-----RDMNVVEVPTFLFI-RDGQI 322 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~-----~~~~V~~~PTl~~~-~~G~~ 322 (348)
.+|+++|+|+++||++|+.+.+.. .++.+.+..++.++++|.++.++..+.. ..|++.++||++++ .+|++
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence 589999999999999999997632 4666666557999999999877632211 13699999999888 68999
Q ss_pred EEEEeCC
Q 018973 323 RGRYVGS 329 (348)
Q Consensus 323 v~~~~G~ 329 (348)
+....+.
T Consensus 94 ~~~~~~~ 100 (124)
T cd02955 94 FFGGTYF 100 (124)
T ss_pred Eeeeeec
Confidence 9766554
No 147
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.26 E-value=3.8e-11 Score=119.11 Aligned_cols=90 Identities=13% Similarity=0.251 Sum_probs=72.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCC-----c--------------------hhHHHHHHh
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDE-----N--------------------DSCMQFLRD 305 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-----~--------------------~~~~~l~~~ 305 (348)
.+++++|+|||+||++|+.+.|.|.+++++++ +++.++.|..+. . +....+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 47999999999999999999999999999886 347777665310 0 011237889
Q ss_pred CCCCccceE-EEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 306 MNVVEVPTF-LFIRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 306 ~~V~~~PTl-~~~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
|+|.++||+ +++++|+++.++.|. +.++|.++|+..
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999987 555899999999999 999999998843
No 148
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.26 E-value=1.4e-11 Score=89.12 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=53.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
++.|+++||++|+.+.+.+++++++++++.|..+|+++ .++++++|||.++||+++ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~---~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE---FPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc---CHhHHHHcCCcccCEEEE--CCE
Confidence 67899999999999999999999988889999999998 456999999999999876 454
No 149
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.26 E-value=4.8e-11 Score=103.05 Aligned_cols=89 Identities=20% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHH-------------------HHHHhCCCCcc
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCM-------------------QFLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~-------------------~l~~~~~V~~~ 311 (348)
.+++++|+||++||++|+++.|.++++.+. ++.++.|+.++.. +.+ .+.++|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 478999999999999999999999988754 3777777764321 111 25667899999
Q ss_pred ce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 312 PT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 312 PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
|+ +++.++|+++.++.|. +.+++.++|+++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 95 6666899999999998 99999999998864
No 150
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.26 E-value=2.5e-11 Score=93.04 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc
Q 018973 131 DEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH 209 (348)
Q Consensus 131 ~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~ 209 (348)
.+.+++.++..-+..|+++||++|+.+.+.+++++++++++.+..+|.++ .++++++|||.++||+++ +|+.+.
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~---~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL---FQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh---CHHHHHHcCCccCCEEEE--CCEEEE
Confidence 34555556777899999999999999999999999999999999999998 556999999999999975 787665
No 151
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.25 E-value=2.8e-11 Score=98.83 Aligned_cols=81 Identities=32% Similarity=0.405 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------------------hHHHHHHhCCCCcc
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------------------SCMQFLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------------------~~~~l~~~~~V~~~ 311 (348)
.+++++|+||++||++|+.+.|.+.++.+.+ .+.++.|+.+... ....+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 4789999999999999999999999998886 3777777753211 11237778999999
Q ss_pred c-eEEEEeCCeEEEEEeCC-ChHHH
Q 018973 312 P-TFLFIRDGQIRGRYVGS-GKGEL 334 (348)
Q Consensus 312 P-Tl~~~~~G~~v~~~~G~-~~~~L 334 (348)
| ++++.++|+++.++.|. +++.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9 56666899999999998 76654
No 152
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.25 E-value=3.7e-11 Score=97.71 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHH-cCCcEEEEEeCCCchhHHHHH-----HHcCcCCC
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQ-CNDVEFILVMGDESEKTKELC-----EREKIKKV 196 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~-~~~v~f~~vd~d~~~~~~~l~-----~~~~V~~~ 196 (348)
+.+.++++.+ .+|+|+|+|+|+||++|+.|.+.. .++++. ..++.++++|.++.++..+.. ..||+.++
T Consensus 4 ~~eal~~Ak~--~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 4 GEEAFEKARR--EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CHHHHHHHHH--cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 4566666665 799999999999999999998732 245554 346899999998854322111 13699999
Q ss_pred CeEEEee-ccccccccccC
Q 018973 197 PHFSFYK-SMEKIHEEEGI 214 (348)
Q Consensus 197 Pt~~~~~-~g~~v~~~~G~ 214 (348)
||++|+. +|+.+....+.
T Consensus 82 Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred CEEEEECCCCCEEeeeeec
Confidence 9999884 68888776553
No 153
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.25 E-value=1.2e-11 Score=91.93 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=51.9
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~ 214 (348)
.|+||++||++|+.+.|.+++++++++. +.|++|| + . +.+.+|||.++||+++ +|+.+ +.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~---~-~~a~~~~v~~vPti~i--~G~~~--~~G~ 64 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D---M-NEILEAGVTATPGVAV--DGELV--IMGK 64 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C---H-HHHHHcCCCcCCEEEE--CCEEE--EEec
Confidence 3789999999999999999999999976 8888877 3 1 2377899999999999 88776 5553
No 154
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.24 E-value=1.1e-10 Score=93.81 Aligned_cols=101 Identities=13% Similarity=0.236 Sum_probs=82.3
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
.+++.++.+...+|+++|+|+++||++|+.+... | .++.+.+.+++.++.+|+++ ++..++++.|++.++|+++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHHHHHHhCccCCCeEEEE
Confidence 4566666666679999999999999999998764 3 55556665568888999876 345679999999999998888
Q ss_pred e--CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 318 R--DGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 318 ~--~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
. +|+++.++.|. ++++|...|++..
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 4 79999999999 9999999988764
No 155
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.23 E-value=6.3e-11 Score=98.93 Aligned_cols=74 Identities=15% Similarity=0.331 Sum_probs=59.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC--------cEEEEEEECCCchh----------------------HHH
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG--------TVVFARMNGDENDS----------------------CMQ 301 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~~~~~~----------------------~~~ 301 (348)
.+++++|+|||+||++|+++.|.|.++.+++.+ ++.++.|+.++..+ -..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999998876542 48889998875432 124
Q ss_pred HHHhCCCCccceEEEE-eCCeEEEE
Q 018973 302 FLRDMNVVEVPTFLFI-RDGQIRGR 325 (348)
Q Consensus 302 l~~~~~V~~~PTl~~~-~~G~~v~~ 325 (348)
++++|++.++||.+++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 7778899999987666 68998865
No 156
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.22 E-value=1.6e-11 Score=104.15 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=92.1
Q ss_pred CCCCCCCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH
Q 018973 111 GTKNAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER 190 (348)
Q Consensus 111 ~~~~~~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~ 190 (348)
..+...++|.+.+|.++.+|-+... +..-||++||-+.-..|+.|..+|+.||+.|-+.+|++||+..+|- |+.+
T Consensus 58 ~~~~~~GhG~y~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PF---lv~k 132 (211)
T KOG1672|consen 58 KEWLSKGHGEYEEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPF---LVTK 132 (211)
T ss_pred HHHHHcCCceEEEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCce---eeee
Confidence 3356788999999999999999987 6788999999999999999999999999999999999999999765 9999
Q ss_pred cCcCCCCeEEEeeccccccccccC
Q 018973 191 EKIKKVPHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 191 ~~V~~~Pt~~~~~~g~~v~~~~G~ 214 (348)
++|+.+|++.+|++|+.+.+++|.
T Consensus 133 L~IkVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 133 LNIKVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeeeEeeeEEEEEcCEEEEEEeeH
Confidence 999999999999999999999993
No 157
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.22 E-value=3e-11 Score=111.48 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=61.8
Q ss_pred HHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------hHHHHHHHcCcCCCCeEEEee
Q 018973 132 EALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------KTKELCEREKIKKVPHFSFYK 203 (348)
Q Consensus 132 ~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------~~~~l~~~~~V~~~Pt~~~~~ 203 (348)
..+++..++++||+|||+||++|+.+.|.|++++++|+ +.++.|++|... ....++++|||+.+||+++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 44666678999999999999999999999999999996 666666665421 124589999999999999997
Q ss_pred c-ccccc
Q 018973 204 S-MEKIH 209 (348)
Q Consensus 204 ~-g~~v~ 209 (348)
. |+.+.
T Consensus 238 ~~~~~v~ 244 (271)
T TIGR02740 238 PDPNQFT 244 (271)
T ss_pred CCCCEEE
Confidence 5 65554
No 158
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.21 E-value=1.4e-10 Score=97.91 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=64.5
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch---------hHHHHH-HhC---CCCccceEEEE-e
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND---------SCMQFL-RDM---NVVEVPTFLFI-R 318 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---------~~~~l~-~~~---~V~~~PTl~~~-~ 318 (348)
++..+|+||++||++|+++.|.+++++++++ +.++.|+.++.. ...+.. +.| ++.++||.+++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4567999999999999999999999999984 455555555421 001233 345 88999976555 6
Q ss_pred CCeE-EEEEeCC-ChHHHHHHHHHHh
Q 018973 319 DGQI-RGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 319 ~G~~-v~~~~G~-~~~~L~~~l~~~~ 342 (348)
+|++ +.++.|. +.++|.+.|++++
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 7665 5578899 9999998888753
No 159
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.20 E-value=1.9e-10 Score=106.10 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--------hHHHHHHhCCCCccceEEEEeC-CeE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--------SCMQFLRDMNVVEVPTFLFIRD-GQI 322 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------~~~~l~~~~~V~~~PTl~~~~~-G~~ 322 (348)
.+++++|+||++||++|+.+.|.|.+++++++ +.++.|++|... ....++++|||.++||++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 57899999999999999999999999999985 555566655421 0124889999999999888864 544
Q ss_pred E-EEEeCC-ChHHHHHHHHHHhC
Q 018973 323 R-GRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 323 v-~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+ ....|. +.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 445687 99999998887643
No 160
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.20 E-value=3.8e-10 Score=92.03 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=81.7
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCC--CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLK--HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~--wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
.+++.++.. ....+|+|-.+ -++.+.-..-.|.+++++|.+ +++|++||++++++ ++.+|||.++||+++
T Consensus 25 ~~~~~~~~~----~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fgV~siPTLl~ 97 (132)
T PRK11509 25 SRLDDWLTQ----APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFGVFRFPATLV 97 (132)
T ss_pred ccHHHHHhC----CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcCCccCCEEEE
Confidence 556677754 34455555442 345566666789999999974 59999999999998 999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHHHHHHhCCCC
Q 018973 317 IRDGQIRGRYVGS-GKGELIGEILRYQGVRV 346 (348)
Q Consensus 317 ~~~G~~v~~~~G~-~~~~L~~~l~~~~~~~~ 346 (348)
|++|+.++++.|. +.+++.++|+++++...
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999999999999 99999999999987643
No 161
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.20 E-value=1.4e-10 Score=89.72 Aligned_cols=70 Identities=26% Similarity=0.505 Sum_probs=55.6
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhC--CcEEEEEEECCCch-h---------------------HHHHHHhCCC
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA--GTVVFARMNGDEND-S---------------------CMQFLRDMNV 308 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~-~---------------------~~~l~~~~~V 308 (348)
+|+++|+||++||++|+...|.|.++.++++ +++.++.|+.++.. + ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 67999999987542 1 2346777999
Q ss_pred CccceEEEE-eCCeE
Q 018973 309 VEVPTFLFI-RDGQI 322 (348)
Q Consensus 309 ~~~PTl~~~-~~G~~ 322 (348)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999987666 67864
No 162
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.16 E-value=4.3e-10 Score=96.69 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=75.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCCchh-------------------HHHHHHhCCCCcc
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDENDS-------------------CMQFLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~-------------------~~~l~~~~~V~~~ 311 (348)
.+++++|+||++||++|+...+.+.++.+++++. +.++.++.+..++ ..++++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 3689999999999999999999999999998653 8888888765431 2357889999999
Q ss_pred ceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 312 PTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 312 PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
|+++++ ++|+++..+.|. +.+++.+++++..
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 976555 699999998998 8899999888653
No 163
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.16 E-value=7.4e-11 Score=103.01 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-H-------------------HHHHHHcCcCCCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-T-------------------KELCEREKIKKVP 197 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~-------------------~~l~~~~~V~~~P 197 (348)
++++++|+|||+||++|+...|.|.++.++ ++.++.|+.++..+ . ..+++.|||.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 589999999999999999999999999763 68889998765321 1 2355678999999
Q ss_pred e-EEEeeccccccccccC
Q 018973 198 H-FSFYKSMEKIHEEEGI 214 (348)
Q Consensus 198 t-~~~~~~g~~v~~~~G~ 214 (348)
+ +++.++|+.+..+.|.
T Consensus 145 ~t~vid~~G~i~~~~~G~ 162 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGD 162 (185)
T ss_pred eEEEECCCceEEEEEecC
Confidence 6 5555789988888774
No 164
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.16 E-value=2e-10 Score=94.35 Aligned_cols=74 Identities=16% Similarity=0.407 Sum_probs=59.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchh---------------------HHHHHHhCC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDS---------------------CMQFLRDMN 307 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~---------------------~~~l~~~~~ 307 (348)
.+++++|+||++||++|+.+.|.+.++.+++.+ ++.++.++.+...+ ...++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 478999999999999999999999999888753 47777777765421 135788999
Q ss_pred CCccceEEEE-eCCeEEEE
Q 018973 308 VVEVPTFLFI-RDGQIRGR 325 (348)
Q Consensus 308 V~~~PTl~~~-~~G~~v~~ 325 (348)
|.++||++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999988777 58988765
No 165
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.15 E-value=2.2e-10 Score=94.42 Aligned_cols=74 Identities=16% Similarity=0.377 Sum_probs=59.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC---cEEEEEEECCCchh----------------------HHHHHHhC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG---TVVFARMNGDENDS----------------------CMQFLRDM 306 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~----------------------~~~l~~~~ 306 (348)
.+++++|+||++||++|+.+.|.+.++.+++++ ++.++.|+.+..++ ...+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 579999999999999999999999999888764 47777777765421 13467789
Q ss_pred CCCccceEEEE-eCCeEEEE
Q 018973 307 NVVEVPTFLFI-RDGQIRGR 325 (348)
Q Consensus 307 ~V~~~PTl~~~-~~G~~v~~ 325 (348)
+|.++||++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999988777 58988765
No 166
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.14 E-value=7.9e-11 Score=93.87 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=60.3
Q ss_pred cCCCEEEEEEeCCCCHHHHhhhhHHHHH---HHHcC-CcEEEEEeCCCch-----------------hHHHHHHHcCcCC
Q 018973 137 AKNKLVVVEFAASRSLDSSKIYPFMVDL---SRQCN-DVEFILVMGDESE-----------------KTKELCEREKIKK 195 (348)
Q Consensus 137 ~~~k~vvV~F~a~wC~~C~~~~p~l~~l---a~~~~-~v~f~~vd~d~~~-----------------~~~~l~~~~~V~~ 195 (348)
.++++++++|+++||+.|+.+.+.+.+. ...+. ++.++.+++++.. ...+++++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 3689999999999999999999999864 34443 4888999987643 2357999999999
Q ss_pred CCeEEEee-ccccccccccCC
Q 018973 196 VPHFSFYK-SMEKIHEEEGIG 215 (348)
Q Consensus 196 ~Pt~~~~~-~g~~v~~~~G~~ 215 (348)
+||++++. +|+.+..+.|..
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS-
T ss_pred cCEEEEEcCCCCEEEEecCCC
Confidence 99999995 799898888854
No 167
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.14 E-value=4e-10 Score=96.98 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=68.6
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----------hHHHHHHhCCC--Cccce-EEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----------SCMQFLRDMNV--VEVPT-FLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------~~~~l~~~~~V--~~~PT-l~~~~~G~~v 323 (348)
+|+||++||++|+++.|.+++++++++ +.++.|+.++.. .-..+.+.|++ .++|| |++.++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999984 666666665431 11236778995 69995 5666899986
Q ss_pred -EEEeCC-ChHHHHHHHHHHhCCC
Q 018973 324 -GRYVGS-GKGELIGEILRYQGVR 345 (348)
Q Consensus 324 -~~~~G~-~~~~L~~~l~~~~~~~ 345 (348)
..+.|. +.++|.+.|++.+..+
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhh
Confidence 578999 9999999999887654
No 168
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.14 E-value=1e-10 Score=116.12 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=66.0
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC-------------------------chhHHHHHHH
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE-------------------------SEKTKELCER 190 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~-------------------------~~~~~~l~~~ 190 (348)
++++|||+|||+||++|+.+.|.|++++++++ ++.|+.|..+. .+...++++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 68999999999999999999999999999986 57777765310 0123568899
Q ss_pred cCcCCCCeEE-EeeccccccccccCC-CCccc
Q 018973 191 EKIKKVPHFS-FYKSMEKIHEEEGIG-PDQLM 220 (348)
Q Consensus 191 ~~V~~~Pt~~-~~~~g~~v~~~~G~~-~~~l~ 220 (348)
|+|+++||++ +.++|+.+..+.|.. .+++.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~ 166 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQAL 166 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHH
Confidence 9999999975 557999999999954 34444
No 169
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.13 E-value=4.3e-10 Score=99.25 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC--------CchhHHHHHHhCCC--------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD--------ENDSCMQFLRDMNV-------------- 308 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~--------~~~~~~~l~~~~~V-------------- 308 (348)
.+++++|.||++||++|+...|.|.++.+++++ .+.++.|+++ ..++.+++++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 478999999999999999999999999999965 3889999863 22356667777653
Q ss_pred ----------------------Cccc----eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 309 ----------------------VEVP----TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 309 ----------------------~~~P----Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
..+| |+++.++|+++.++.|. +.++|.+.|+++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122 67777999999999998 88889888888764
No 170
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.13 E-value=2.2e-10 Score=90.40 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=63.6
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCc--h------------------hHHHHHHHcCcCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDES--E------------------KTKELCEREKIKK 195 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~--~------------------~~~~l~~~~~V~~ 195 (348)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+.|.. + ...++++.|++..
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4799999999999999999999999999998 5699999999873 1 1156888999999
Q ss_pred CCeEEEe-ecccccccccc
Q 018973 196 VPHFSFY-KSMEKIHEEEG 213 (348)
Q Consensus 196 ~Pt~~~~-~~g~~v~~~~G 213 (348)
+|+++++ ++|+.+.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9998777 47877776654
No 171
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.13 E-value=1.7e-10 Score=97.34 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=53.6
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch---------hHHHHH-HHc---CcCCCCeEEEee-c
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE---------KTKELC-ERE---KIKKVPHFSFYK-S 204 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~---------~~~~l~-~~~---~V~~~Pt~~~~~-~ 204 (348)
++..+|+|||+||+||++..|.|++++++|+ +.++.|+.|+.. ...+.. ..| +|.++||.+++. +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 5667999999999999999999999999984 666667766421 012233 345 899999977774 5
Q ss_pred ccc-cccccc
Q 018973 205 MEK-IHEEEG 213 (348)
Q Consensus 205 g~~-v~~~~G 213 (348)
|.. +....|
T Consensus 129 G~~i~~~~~G 138 (153)
T TIGR02738 129 TRKAYPVLQG 138 (153)
T ss_pred CCEEEEEeec
Confidence 554 444555
No 172
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.12 E-value=2.3e-10 Score=93.41 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=60.6
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC------c------------------hhHHHHHHHc
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE------S------------------EKTKELCERE 191 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~------~------------------~~~~~l~~~~ 191 (348)
+++++||+||++||++|+...|.|+++.++|.+ +.++.|+.++ . +...++++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 679999999999999999999999999999974 7888886521 1 1123567778
Q ss_pred CcCCCCeEEEe-ecccccccccc
Q 018973 192 KIKKVPHFSFY-KSMEKIHEEEG 213 (348)
Q Consensus 192 ~V~~~Pt~~~~-~~g~~v~~~~G 213 (348)
++..+|+.+++ ++|+.+..+.|
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEec
Confidence 88999987777 57888877766
No 173
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.12 E-value=7.2e-10 Score=84.93 Aligned_cols=76 Identities=13% Similarity=0.276 Sum_probs=65.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-C
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-G 330 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~ 330 (348)
.+..-+..|+++||++|....+.+.+++..++ ++.+..+|.++.++ ++++|+|.++||+++ +|+.+. .|. +
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e---~a~~~~V~~vPt~vi--dG~~~~--~G~~~ 82 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQD---EVEERGIMSVPAIFL--NGELFG--FGRMT 82 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHH---HHHHcCCccCCEEEE--CCEEEE--eCCCC
Confidence 46677889999999999999999999998874 59999999999887 999999999999975 888766 476 6
Q ss_pred hHHHH
Q 018973 331 KGELI 335 (348)
Q Consensus 331 ~~~L~ 335 (348)
.+++.
T Consensus 83 ~~e~~ 87 (89)
T cd03026 83 LEEIL 87 (89)
T ss_pred HHHHh
Confidence 66654
No 174
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.12 E-value=3.9e-10 Score=81.41 Aligned_cols=62 Identities=11% Similarity=0.240 Sum_probs=54.0
Q ss_pred EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE
Q 018973 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
-++.|+++||++|+.+.+.+++++... +++.+..+|++++++ +++++++.++||+++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~---l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD---LADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh---HHHHcCCcccCEEEE--CCEEE
Confidence 367899999999999999999998775 469999999998877 999999999999876 66644
No 175
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=4.9e-10 Score=121.06 Aligned_cols=92 Identities=20% Similarity=0.358 Sum_probs=75.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEEC---CCch---------------------hHHHHHHhC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNG---DEND---------------------SCMQFLRDM 306 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~---~~~~---------------------~~~~l~~~~ 306 (348)
.+++++|+||++||++|+.+.|.|+++.++++++ +.++.|.. ++.. ...++.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999754 77777742 2111 112367789
Q ss_pred CCCccceEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 307 NVVEVPTFLFI-RDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 307 ~V~~~PTl~~~-~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+|.++||++++ ++|+++.++.|. ..++|.++|++.+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999998888 799999999999 88999999888753
No 176
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.09 E-value=2.1e-10 Score=92.98 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------------------hhHHHHHHHcCcCCCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------------------EKTKELCEREKIKKVP 197 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------------------~~~~~l~~~~~V~~~P 197 (348)
++++++|+||++||++|+.+.|.|.++++++ .++.|..+.. +...++++.|+|.++|
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY---PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC---CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 5799999999999999999999999998874 3333333221 1134699999999999
Q ss_pred eEEEeeccccccccccC
Q 018973 198 HFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G~ 214 (348)
+++++.+|+.+....|.
T Consensus 96 ~~~vid~~gi~~~~~g~ 112 (123)
T cd03011 96 AIVIVDPGGIVFVTTGV 112 (123)
T ss_pred EEEEEcCCCeEEEEecc
Confidence 99999766677777773
No 177
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.09 E-value=4.9e-10 Score=110.45 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCCc-eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHH---HHHHHcCCcEEEEEeCCC-chhHHHHHHHc
Q 018973 117 RDERV-KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMV---DLSRQCNDVEFILVMGDE-SEKTKELCERE 191 (348)
Q Consensus 117 ~~~~v-~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~v~f~~vd~d~-~~~~~~l~~~~ 191 (348)
.+... ..+.+.+++++++.++++|+|+|||||+||-.||.+++..- +...+..|++.+++|.++ +++..++.++|
T Consensus 451 ~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 451 SHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred ccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc
Confidence 33344 67766779999999888889999999999999999998763 445567889999999665 56788999999
Q ss_pred CcCCCCeEEEee-cccccc
Q 018973 192 KIKKVPHFSFYK-SMEKIH 209 (348)
Q Consensus 192 ~V~~~Pt~~~~~-~g~~v~ 209 (348)
|+-++|++++|. +|++..
T Consensus 531 ~~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred CCCCCCEEEEECCCCCcCc
Confidence 999999999997 665554
No 178
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.07 E-value=2.8e-10 Score=98.30 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=57.9
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--------------------hHHHHHHHcCcCCCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--------------------KTKELCEREKIKKVP 197 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--------------------~~~~l~~~~~V~~~P 197 (348)
++++++|+||++||++|+.+.|.++++.++ ++.++.|+.++.. ...++.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 589999999999999999999999999864 5788888865321 112456778889999
Q ss_pred e-EEEeecccccccccc
Q 018973 198 H-FSFYKSMEKIHEEEG 213 (348)
Q Consensus 198 t-~~~~~~g~~v~~~~G 213 (348)
+ +++.++|+.+..+.|
T Consensus 140 ~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAG 156 (173)
T ss_pred eEEEEcCCceEEEEEec
Confidence 5 555578988887777
No 179
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.07 E-value=1.3e-09 Score=98.23 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECC--------CchhHHHHH-HhCCC-------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGD--------ENDSCMQFL-RDMNV------------- 308 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~--------~~~~~~~l~-~~~~V------------- 308 (348)
.+++++|+||++||++|+...|.|.++.++++++ +.++.|+++ ..++..+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3689999999999999999999999999999654 888888864 223445554 33321
Q ss_pred ---------------------Cccc-eEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 309 ---------------------VEVP-TFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 309 ---------------------~~~P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
...| |+++.++|+++.++.|. ++++|.+.|++++.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1247 56777999999999999 89999999998874
No 180
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.07 E-value=8e-10 Score=89.51 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc------------------hhHHHHHHhCCCCccce
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN------------------DSCMQFLRDMNVVEVPT 313 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~------------------~~~~~l~~~~~V~~~PT 313 (348)
.+++++|+||++||++|+.+.|.+.++.+++. +..+.+|-+.. +...+++++|+|.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 46899999999999999999999999987742 33333332100 01124888999999999
Q ss_pred EEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973 314 FLFIRDGQIRGRYVGS-GKGELIGE 337 (348)
Q Consensus 314 l~~~~~G~~v~~~~G~-~~~~L~~~ 337 (348)
++++.+|+++.++.|. ++++|.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 8888644488899998 88888764
No 181
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.8e-10 Score=98.32 Aligned_cols=97 Identities=19% Similarity=0.287 Sum_probs=85.7
Q ss_pred CCCCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHc
Q 018973 114 NAPRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCERE 191 (348)
Q Consensus 114 ~~~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~ 191 (348)
.-.++++++-..+.+.+++.+...+.+.++|.|||.|.+.|+...|.+.+|..+|.. .+|.+||+.. .++.+++|
T Consensus 119 ~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kf 195 (265)
T KOG0914|consen 119 AYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKF 195 (265)
T ss_pred ccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHhe
Confidence 345677888888889999999988889999999999999999999999999999965 9999999998 55589999
Q ss_pred CcC------CCCeEEEeecccccccccc
Q 018973 192 KIK------KVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 192 ~V~------~~Pt~~~~~~g~~v~~~~G 213 (348)
+|. .+||+++|++|+++.+.-.
T Consensus 196 ris~s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred eeccCcccccCCeEEEEccchhhhcCcc
Confidence 985 7899999999999986643
No 182
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.05 E-value=6.9e-10 Score=109.43 Aligned_cols=106 Identities=18% Similarity=0.334 Sum_probs=87.3
Q ss_pred eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCC
Q 018973 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVV 309 (348)
Q Consensus 234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~ 309 (348)
..+.+..++++.++++ .+|+|+|+|||+||-.|+.+++.. .+...+.+ ++...++|.++++ +..++.++||+-
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 4455556899999876 457999999999999999998865 34444444 4999999998765 678899999999
Q ss_pred ccceEEEEe-CCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 310 EVPTFLFIR-DGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 310 ~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
++|++++|. +|++.....|. +.+.+.+++++..
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999996 88877778899 9999999998764
No 183
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.05 E-value=1e-09 Score=87.61 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=53.4
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-----------------HHHHhCCCCccceEE
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-----------------QFLRDMNVVEVPTFL 315 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-----------------~l~~~~~V~~~PTl~ 315 (348)
+++++|+||++||++|+.+.|.++++.+.+.+++.++.+..+..++.. ++.++|++..+|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 789999999999999999999999998888666766665322222222 244557778889755
Q ss_pred EE-eCCeEEEE
Q 018973 316 FI-RDGQIRGR 325 (348)
Q Consensus 316 ~~-~~G~~v~~ 325 (348)
++ ++|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 55 68887654
No 184
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.04 E-value=6.8e-10 Score=88.67 Aligned_cols=62 Identities=13% Similarity=0.298 Sum_probs=50.1
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFS 200 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 200 (348)
+++++|+||++||++|+...|.++++++++.+ +.++.+..++.++..++++++++..+|++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 79999999999999999999999999988754 666666433344566788888888888764
No 185
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.02 E-value=1.4e-09 Score=93.53 Aligned_cols=77 Identities=25% Similarity=0.307 Sum_probs=63.9
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCch-------------------hHHHHHHHcCcCCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESE-------------------KTKELCEREKIKKV 196 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~-------------------~~~~l~~~~~V~~~ 196 (348)
++++++|+||++||++|+...+.+.++.+++++ +.++.|++|+.+ ...++++.|+|..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 579999999999999999999999999999864 889999987542 23578899999999
Q ss_pred CeEEEe-eccccccccccC
Q 018973 197 PHFSFY-KSMEKIHEEEGI 214 (348)
Q Consensus 197 Pt~~~~-~~g~~v~~~~G~ 214 (348)
|+++++ ++|+.+..+.|.
T Consensus 140 P~~~lid~~g~i~~~~~g~ 158 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGE 158 (173)
T ss_pred CeEEEECCCCcEEEEEeCC
Confidence 987666 578777766663
No 186
>smart00594 UAS UAS domain.
Probab=99.01 E-value=3.2e-09 Score=86.31 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=75.6
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
.+++.+..+...+|.++|+|+++||++|+.+...+ .++.+.+..++.+..+|++..+. .+++++|++.++|+++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEE
Confidence 45555555555689999999999999999987653 44555555568888899886653 579999999999998887
Q ss_pred -eCC-----eEEEEEeCC-ChHHHHHHH
Q 018973 318 -RDG-----QIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 318 -~~G-----~~v~~~~G~-~~~~L~~~l 338 (348)
.+| +.+.++.|. +.++|...|
T Consensus 94 ~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 94 DPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 455 467888999 889988776
No 187
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.01 E-value=2.3e-09 Score=84.40 Aligned_cols=77 Identities=27% Similarity=0.512 Sum_probs=64.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc-h-hH------------------HHHHHhCCCCc
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN-D-SC------------------MQFLRDMNVVE 310 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~-~-~~------------------~~l~~~~~V~~ 310 (348)
.+++++|+||++||+.|+...+.+.++.+++. .++.++.|+.+.. . .. .++.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 36899999999999999999999999999985 4599999999874 1 11 23788899999
Q ss_pred cceEEEE-eCCeEEEEEeC
Q 018973 311 VPTFLFI-RDGQIRGRYVG 328 (348)
Q Consensus 311 ~PTl~~~-~~G~~v~~~~G 328 (348)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9987666 68999988776
No 188
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.01 E-value=2.8e-09 Score=89.03 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=63.8
Q ss_pred CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCC--
Q 018973 252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVV-- 309 (348)
Q Consensus 252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~-- 309 (348)
.+++++|+||++ ||++|+...|.+.++.+.+++ .+.++.|..+..+...+ +.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 589999999999 999999999999999888654 38888888776554333 55567888
Q ss_pred -------ccceE-EEEeCCeEEEEEeCC
Q 018973 310 -------EVPTF-LFIRDGQIRGRYVGS 329 (348)
Q Consensus 310 -------~~PTl-~~~~~G~~v~~~~G~ 329 (348)
.+|++ ++.++|+++....|.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99965 666899999999998
No 189
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.01 E-value=2.3e-09 Score=87.49 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=61.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCC------chhHH------------------HHHHhC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDE------NDSCM------------------QFLRDM 306 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~------~~~~~------------------~l~~~~ 306 (348)
.+++++|+||++||++|....|.|+++.+++++ ++.++.|+.++ .+..+ .+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 468999999999999999999999999999974 48888886521 11222 255568
Q ss_pred CCCccceEEEE-eCCeEEEEEeCC
Q 018973 307 NVVEVPTFLFI-RDGQIRGRYVGS 329 (348)
Q Consensus 307 ~V~~~PTl~~~-~~G~~v~~~~G~ 329 (348)
++.++|+.+++ ++|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 88999976666 799999998875
No 190
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=8.1e-10 Score=119.40 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeC---CC--c-------------------hhHHHHHHHc
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMG---DE--S-------------------EKTKELCERE 191 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~---d~--~-------------------~~~~~l~~~~ 191 (348)
++++|||+|||+||++|+...|.|++++++|++ +.++.|.. |+ . +...++.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 689999999999999999999999999999975 77777742 22 0 1134577899
Q ss_pred CcCCCCeEEEe-eccccccccccC
Q 018973 192 KIKKVPHFSFY-KSMEKIHEEEGI 214 (348)
Q Consensus 192 ~V~~~Pt~~~~-~~g~~v~~~~G~ 214 (348)
+|.++||++++ ++|+.+.++.|.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~ 522 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGE 522 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecc
Confidence 99999999988 699999888884
No 191
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.00 E-value=1e-09 Score=89.48 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=62.4
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
...++++.++.+...+|+++|+|+++||++|+.+...+ .++.+....++..+.++.+..+. -....+ .++||+
T Consensus 8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~---~~~~~g-~~vPti 83 (130)
T cd02960 8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDK---NLSPDG-QYVPRI 83 (130)
T ss_pred chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCC---CcCccC-cccCeE
Confidence 33467777777777899999999999999999998765 44455454456666777653321 011234 679999
Q ss_pred EEE-eCCeEEEEEeCC
Q 018973 315 LFI-RDGQIRGRYVGS 329 (348)
Q Consensus 315 ~~~-~~G~~v~~~~G~ 329 (348)
+|+ .+|+++.++.|.
T Consensus 84 vFld~~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDPSLTVRADITGR 99 (130)
T ss_pred EEECCCCCCccccccc
Confidence 888 689888887774
No 192
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.99 E-value=1.7e-08 Score=87.38 Aligned_cols=167 Identities=17% Similarity=0.281 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc-ccccccccC--CCCcccccccccCCCccc
Q 018973 157 IYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM-EKIHEEEGI--GPDQLMGDVLYYGDSHSA 232 (348)
Q Consensus 157 ~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g-~~v~~~~G~--~~~~l~~~v~~~~~~~~~ 232 (348)
....+.++|+.+. ++.|+.+. ..++++++++.. |++++|+.+ +....+.|. +.+.|...+..... +.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~------~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~--P~ 78 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF------NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF--PL 78 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS--TS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc------HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc--cc
Confidence 4567888999987 49999997 234899999999 999999984 334556664 44455443333222 22
Q ss_pred eeecCChhhHHHHhhhcccCCc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC--
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV-- 309 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~-- 309 (348)
+..+ +.+.+..+... +. ++++.|..........+...+..+++++++++.|+.+|++..++ +++.||+.
T Consensus 79 v~~~-t~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~---~~~~~~i~~~ 150 (184)
T PF13848_consen 79 VPEL-TPENFEKLFSS----PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR---LLKYFGIDED 150 (184)
T ss_dssp CEEE-STTHHHHHHST----SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH---HHHHTTTTTS
T ss_pred cccc-chhhHHHHhcC----CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH---HHHHcCCCCc
Confidence 3333 56678777764 44 47888877777788888889999999999999999999997776 99999998
Q ss_pred ccceEEEEe--CCeEEEEEeCC-ChHHHHHHHHH
Q 018973 310 EVPTFLFIR--DGQIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 310 ~~PTl~~~~--~G~~v~~~~G~-~~~~L~~~l~~ 340 (348)
.+|+++++. +++......|. +.+.|.+|++.
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 899999886 45533334677 99999999864
No 193
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.99 E-value=5.4e-09 Score=88.34 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEEC--------CCchhHHHHHHh-CCC-------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNG--------DENDSCMQFLRD-MNV------------- 308 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~--------~~~~~~~~l~~~-~~V------------- 308 (348)
.+++++|.||++||++|+...|.+.++.+++++ .+.++.|++ +..+..++++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 478899999999999999999999999999964 588998885 222345556653 322
Q ss_pred -------------Cccc-----eEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 309 -------------VEVP-----TFLFIRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 309 -------------~~~P-----Tl~~~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
..+| |+++.++|+++.++.|. +.++|...|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1367 68888999999999999 889999888765
No 194
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.98 E-value=1.6e-09 Score=81.69 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=50.5
Q ss_pred HHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH---HHHHH-HcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 129 EFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM---VDLSR-QCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 129 ~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l---~~la~-~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
++++.+..+ .+|+++|+|+|+||++|+.+...+ .++.+ -..++.+++||.++.+... .+..+++|+++|+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~~~~~P~~~~l 80 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFDRQGYPTFFFL 80 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHHHCSSSEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhCCccCCEEEEe
Confidence 455555544 499999999999999999998766 34444 2256899999998744322 2222679999987
Q ss_pred e
Q 018973 203 K 203 (348)
Q Consensus 203 ~ 203 (348)
.
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 195
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.97 E-value=1.3e-09 Score=91.09 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=64.6
Q ss_pred cCCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchh------------------HHHHHHHcCcC-
Q 018973 137 AKNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEK------------------TKELCEREKIK- 194 (348)
Q Consensus 137 ~~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~------------------~~~l~~~~~V~- 194 (348)
.+++++||+||++ ||++|+...|.+.+++++|. ++.++.|..+..+. ...+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3799999999999 99999999999999998864 48888888775431 23677788988
Q ss_pred --------CCCeE-EEeeccccccccccCCC
Q 018973 195 --------KVPHF-SFYKSMEKIHEEEGIGP 216 (348)
Q Consensus 195 --------~~Pt~-~~~~~g~~v~~~~G~~~ 216 (348)
.+|++ ++-++|+.+....|...
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99985 45578999888887655
No 196
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.95 E-value=1.7e-09 Score=88.16 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=56.7
Q ss_pred HHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH------HHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 128 EEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM------VDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 128 ~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l------~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
.+|++.++.+ .+|+|+|+|+++||++|+.+.... .++.++ ++..+.++.|..+.. +. ..+ .++||+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~--~~-~~g-~~vPti 83 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKN--LS-PDG-QYVPRI 83 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCC--cC-ccC-cccCeE
Confidence 3666665544 489999999999999999998654 333322 456667776643211 11 234 689999
Q ss_pred EEe-eccccccccccCC
Q 018973 200 SFY-KSMEKIHEEEGIG 215 (348)
Q Consensus 200 ~~~-~~g~~v~~~~G~~ 215 (348)
+|+ .+|+.+.++.|..
T Consensus 84 vFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 84 MFVDPSLTVRADITGRY 100 (130)
T ss_pred EEECCCCCCcccccccc
Confidence 999 5788888888854
No 197
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.94 E-value=3.1e-09 Score=93.86 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC--------CchhHHHHHHHcCcCCCCe
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD--------ESEKTKELCEREKIKKVPH 198 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d--------~~~~~~~l~~~~~V~~~Pt 198 (348)
++++|||.|||+||++|+...|.|.++.++|.+ +.++.|+++ ..++.+++++++++. +|.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpv 107 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNF 107 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-cee
Confidence 689999999999999999999999999999864 899999864 234567778888763 443
No 198
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.93 E-value=5.5e-09 Score=88.20 Aligned_cols=85 Identities=22% Similarity=0.378 Sum_probs=65.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCC--------chhHHHHHHh-CCC-------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDE--------NDSCMQFLRD-MNV------------- 308 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~--------~~~~~~l~~~-~~V------------- 308 (348)
.+++++|+||++||+ |....|.|.++.+++++ .+.++.|+.+. .+..++++++ +++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 478999999999999 99999999999999964 48888887642 2345566654 331
Q ss_pred ----------Cccc------------eEEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973 309 ----------VEVP------------TFLFIRDGQIRGRYVGS-GKGELIGE 337 (348)
Q Consensus 309 ----------~~~P------------Tl~~~~~G~~v~~~~G~-~~~~L~~~ 337 (348)
..+| |+++.++|+++.++.|. +.++|.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 2356 56666999999999999 88877653
No 199
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.93 E-value=6.7e-09 Score=90.99 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=62.1
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-----------------HHHHHHhCCCCccce-
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-----------------CMQFLRDMNVVEVPT- 313 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-----------------~~~l~~~~~V~~~PT- 313 (348)
.+++++|+||++||++|+++.|.+.++.++.+.++. .++.+..++ ..++.+.|++..+|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv--~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVV--MISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEE--EEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 478999999999999999999999999877543344 443221111 224677889999996
Q ss_pred EEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 018973 314 FLFIRDGQIRGRYVGSGKGELIGEILRY 341 (348)
Q Consensus 314 l~~~~~G~~v~~~~G~~~~~L~~~l~~~ 341 (348)
+++.++|+++.+......+.+.+.++..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 5556899988763222566777777654
No 200
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.92 E-value=4.2e-09 Score=94.94 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=48.7
Q ss_pred HhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCC--------CchhHHHHH-HHcCcCCCCe
Q 018973 135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGD--------ESEKTKELC-EREKIKKVPH 198 (348)
Q Consensus 135 ~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d--------~~~~~~~l~-~~~~V~~~Pt 198 (348)
.+.++++|||.|||+||++|+...|.|.+++++|.+ +.++.|+++ +.++..+.+ +++++. +|.
T Consensus 95 sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~-fPv 168 (236)
T PLN02399 95 SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAE-FPI 168 (236)
T ss_pred HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-Ccc
Confidence 333689999999999999999999999999999964 899999874 223445554 466664 553
No 201
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.92 E-value=2.1e-09 Score=98.56 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=75.4
Q ss_pred CCCCCceEecCHHHHHHHHHhcC-CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973 116 PRDERVKKVHSIEEFDEALRLAK-NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 116 ~~~~~v~~v~s~~~f~~~l~~~~-~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
..-+.|.+|.+.++|-+.+.... +..|||+||-+.++.|+.+...|..||.+|+.++|++|....++ +..+|.+.
T Consensus 122 ~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~----~~~~f~~~ 197 (265)
T PF02114_consen 122 PRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP----ASENFPDK 197 (265)
T ss_dssp ----SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC----TTTTS-TT
T ss_pred CcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC----cccCCccc
Confidence 34678999988999999886543 67899999999999999999999999999999999999988743 56789999
Q ss_pred CCCeEEEeeccccccccccC
Q 018973 195 KVPHFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 195 ~~Pt~~~~~~g~~v~~~~G~ 214 (348)
.+||+++|++|+.++.++|.
T Consensus 198 ~LPtllvYk~G~l~~~~V~l 217 (265)
T PF02114_consen 198 NLPTLLVYKNGDLIGNFVGL 217 (265)
T ss_dssp C-SEEEEEETTEEEEEECTG
T ss_pred CCCEEEEEECCEEEEeEEeh
Confidence 99999999999999988874
No 202
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.91 E-value=6.4e-09 Score=90.02 Aligned_cols=83 Identities=7% Similarity=0.002 Sum_probs=63.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEE------EEEECCCch-hHH------------------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVF------ARMNGDEND-SCM------------------------ 300 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~------~~vd~~~~~-~~~------------------------ 300 (348)
.+|+++|+|||.||++|+...|.+.++... ++.+ ..||.++.. ...
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 489999999999999999999999999654 2444 566665421 111
Q ss_pred -HHHHhCCCCccc-e-EEEEeCCeEEEEEeCC-ChHHHHHH
Q 018973 301 -QFLRDMNVVEVP-T-FLFIRDGQIRGRYVGS-GKGELIGE 337 (348)
Q Consensus 301 -~l~~~~~V~~~P-T-l~~~~~G~~v~~~~G~-~~~~L~~~ 337 (348)
.+...|++.++| | +++.++|+++.++.|. +.+++.+.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 144568899997 6 5777999999999999 87777653
No 203
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.90 E-value=6.4e-08 Score=97.71 Aligned_cols=186 Identities=15% Similarity=0.184 Sum_probs=127.6
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
.+++.+.+.+.++. |-+.++.+.|+.|..+...++++++.-+.+.+...+.+ ...|+|.+.++|+
T Consensus 7 ~~~l~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------------~~~p~~~~~~~~~ 71 (517)
T PRK15317 7 KTQLKQYLELLERP-IELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------------VRKPSFSITRPGE 71 (517)
T ss_pred HHHHHHHHHhCCCC-EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------------CCCCEEEEEcCCc
Confidence 45667777754444 54555555899999999999999998776665332211 2479999887665
Q ss_pred cc-cccccCC----CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973 207 KI-HEEEGIG----PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ 281 (348)
Q Consensus 207 ~v-~~~~G~~----~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~ 281 (348)
.. -+|.|.. ...+...+...+.....+ .++..+.++.- ++..-+..|.++.|++|......+.+++..
T Consensus 72 ~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l-----~~~~~~~i~~~--~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 72 DTGVRFAGIPMGHEFTSLVLALLQVGGHPPKL-----DQEVIEQIKAL--DGDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred cceEEEEecCccHHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHhc--CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 43 2344422 122333333323332222 23344444433 355668899999999999999999999987
Q ss_pred hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 282 MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 282 ~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
.+ ++.+-.+|..++++ ++++|++.++|++++ +|+.+ +.|. +.++|.+.+.+..
T Consensus 145 ~~-~i~~~~id~~~~~~---~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 145 NP-NITHTMIDGALFQD---EVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILAKLDTGA 198 (517)
T ss_pred CC-CceEEEEEchhCHh---HHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhccc
Confidence 64 69999999999998 999999999999876 66543 5688 8888888887643
No 204
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.89 E-value=6.2e-09 Score=83.51 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=64.2
Q ss_pred HHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 129 EFDEALRLA--KNKLVVVEFAASRSLDSSKIYPFM---VDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 129 ~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
+|+++++.+ ++|+++|+|+++||++|+.+.... +++.+... +..++++|+++. +..+++..|++.++|+++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhCccCCCeEEEE
Confidence 455555544 489999999999999999987532 22333332 478888998763 36789999999999999988
Q ss_pred e--ccccccccccC
Q 018973 203 K--SMEKIHEEEGI 214 (348)
Q Consensus 203 ~--~g~~v~~~~G~ 214 (348)
. +|+.+.++.|.
T Consensus 84 ~~~~g~~l~~~~G~ 97 (114)
T cd02958 84 DPRTGEVLKVWSGN 97 (114)
T ss_pred eCccCcEeEEEcCC
Confidence 5 58888877774
No 205
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.88 E-value=6.5e-09 Score=89.53 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=55.1
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc----------hhHHHHHHHcCc--CCCCeEEEe-eccccc-
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES----------EKTKELCEREKI--KKVPHFSFY-KSMEKI- 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~----------~~~~~l~~~~~V--~~~Pt~~~~-~~g~~v- 208 (348)
+|.||++||++|++..|.|.+++++|+ +.++.|+.|+. +....+.+.|++ .++||.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 677999999999999999999999994 77777877753 122447778995 699996655 688875
Q ss_pred cccccC
Q 018973 209 HEEEGI 214 (348)
Q Consensus 209 ~~~~G~ 214 (348)
..+.|.
T Consensus 152 ~~~~G~ 157 (181)
T PRK13728 152 PLLQGA 157 (181)
T ss_pred EEEECC
Confidence 456663
No 206
>PLN02412 probable glutathione peroxidase
Probab=98.87 E-value=1.4e-08 Score=87.09 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHH-HHHhCC--------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQ-FLRDMN-------------- 307 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~-l~~~~~-------------- 307 (348)
.+++++|+||++||++|+...|.|.++.++++++ +.++.|+.+. .++... ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 3689999999999999999999999999999754 8889888642 112222 233321
Q ss_pred --------------------CCccce-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 308 --------------------VVEVPT-FLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 308 --------------------V~~~PT-l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
|...|+ +++.++|+++.++.|. +.++|...|+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 233475 6666899999999999 99999999998865
No 207
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.87 E-value=6.3e-09 Score=87.86 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=47.0
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC--------chhHHHHHHH-cCcCCCCeE
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE--------SEKTKELCER-EKIKKVPHF 199 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~--------~~~~~~l~~~-~~V~~~Pt~ 199 (348)
++++|||.|||+||+ |+...|.|.+++++|. ++.++.|+++. .++.++++++ +++. +|.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~-fp~~ 91 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT-FPMF 91 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC-ceee
Confidence 689999999999999 9999999999999996 48888887642 2345666765 6653 5544
No 208
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.84 E-value=1.7e-07 Score=94.59 Aligned_cols=186 Identities=14% Similarity=0.209 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
.+++.+.+.+.++...++.|.. .|..|..+...++++++..+.+.+...+.++ ...|++.+.++|+
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~-------------~~~p~~~~~~~~~ 72 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT-------------LRKPSFTILRDGA 72 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc-------------CCCCeEEEecCCc
Confidence 4667777776445555555554 7999999999999999987767665444322 3469998887765
Q ss_pred cc-cccccCC----CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973 207 KI-HEEEGIG----PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ 281 (348)
Q Consensus 207 ~v-~~~~G~~----~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~ 281 (348)
.. -+|.|.. ...+...+...+.....+ + ++..+.++.- ++..-+..|.++.|++|......+.+++..
T Consensus 73 ~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l----~-~~~~~~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 73 DTGIRFAGIPGGHEFTSLVLAILQVGGHGPKL----D-EGIIDRIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALL 145 (515)
T ss_pred ccceEEEecCCcHHHHHHHHHHHHhcCCCCCC----C-HHHHHHHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 32 3344422 122333333333322222 2 3333344432 355668899999999999999999999988
Q ss_pred hCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 282 MAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 282 ~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
.+ ++..-.+|..++++ ++++|++.++|++++ +|+.+ +.|. +.+++.+.+.+.
T Consensus 146 ~p-~i~~~~id~~~~~~---~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 146 NP-NISHTMIDGALFQD---EVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred CC-CceEEEEEchhCHH---HHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhhc
Confidence 75 68888999999998 999999999999876 66543 5687 888887777655
No 209
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.82 E-value=9.7e-09 Score=77.36 Aligned_cols=74 Identities=28% Similarity=0.552 Sum_probs=54.3
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI 317 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~ 317 (348)
++++.+..+...+++++|+|+++||++|+.+...+ .++.+.+.+++.++.+|.++.+....+.. .++|+++++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~----~~~P~~~~l 80 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR----QGYPTFFFL 80 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH----CSSSEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC----ccCCEEEEe
Confidence 45566666556799999999999999999998766 45555344568999999987664221222 569999887
Q ss_pred e
Q 018973 318 R 318 (348)
Q Consensus 318 ~ 318 (348)
.
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 210
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.81 E-value=1.4e-08 Score=79.50 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=63.3
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCC-CchhHHHHHHHcC--cCCCCeEEEeecccccccccc
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGD-ESEKTKELCEREK--IKKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d-~~~~~~~l~~~~~--V~~~Pt~~~~~~g~~v~~~~G 213 (348)
+++++++||++||++|+.+.|.+.++++++.+ +.++.+|.. . .+++...|+ +..+|++.++.+|+.+....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 78999999999999999999999999999985 999999986 5 456888999 999999998888877655554
No 211
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.81 E-value=1.4e-08 Score=82.85 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCCEEEEEEeCC--CCHHHHhhhhHHHHHHHHcC-C-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee
Q 018973 128 EEFDEALRLAKNKLVVVEFAAS--RSLDSSKIYPFMVDLSRQCN-D-VEFILVMGDESEKTKELCEREKIKKVPHFSFYK 203 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~--wC~~C~~~~p~l~~la~~~~-~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 203 (348)
.++++.+. .....+|.|-.+ .++.+--+.-.|++++++|+ + ++|++||+|+ .++++.+|||+++||+++|+
T Consensus 25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccCCEEEEEE
Confidence 55555555 344455555432 47778888999999999998 3 8999999999 56699999999999999999
Q ss_pred ccccccccccCC
Q 018973 204 SMEKIHEEEGIG 215 (348)
Q Consensus 204 ~g~~v~~~~G~~ 215 (348)
+|+.+.+..|..
T Consensus 100 dGk~v~~i~G~~ 111 (132)
T PRK11509 100 GGNYRGVLNGIH 111 (132)
T ss_pred CCEEEEEEeCcC
Confidence 999999998854
No 212
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.80 E-value=1.4e-08 Score=88.97 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=51.5
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-----------------HHHHHHHcCcCCCCeEE
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-----------------TKELCEREKIKKVPHFS 200 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-----------------~~~l~~~~~V~~~Pt~~ 200 (348)
++++++|+||++||++|+...|.+.++.+++ ++.++.|..++.++ ..++++.|+|..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 6899999999999999999999999998775 34444444332111 23567788888888755
Q ss_pred E-eecccccc
Q 018973 201 F-YKSMEKIH 209 (348)
Q Consensus 201 ~-~~~g~~v~ 209 (348)
+ .++|+...
T Consensus 152 lID~~G~I~~ 161 (189)
T TIGR02661 152 LLDQDGKIRA 161 (189)
T ss_pred EECCCCeEEE
Confidence 4 45676654
No 213
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.9e-09 Score=89.09 Aligned_cols=87 Identities=13% Similarity=0.269 Sum_probs=73.8
Q ss_pred cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHHHHHHhCCC------
Q 018973 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCMQFLRDMNV------ 308 (348)
Q Consensus 236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~~l~~~~~V------ 308 (348)
....+.+++.+... ..+.++|.|++.|.+.|+...|.+.+++.+|. +.++|++||+...++ .+++|+|
T Consensus 129 f~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd---~a~kfris~s~~s 203 (265)
T KOG0914|consen 129 FTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD---VAAKFRISLSPGS 203 (265)
T ss_pred ecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC---hHHheeeccCccc
Confidence 44455566666544 57899999999999999999999999999996 459999999999998 8999988
Q ss_pred CccceEEEEeCCeEEEEEe
Q 018973 309 VEVPTFLFIRDGQIRGRYV 327 (348)
Q Consensus 309 ~~~PTl~~~~~G~~v~~~~ 327 (348)
+++||+++|++|+++.|.-
T Consensus 204 rQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 204 RQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred ccCCeEEEEccchhhhcCc
Confidence 4799999999999887653
No 214
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.77 E-value=1.8e-08 Score=85.13 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=49.3
Q ss_pred hcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeC--------CCchhHHHHHHH-cCcCCCCeE
Q 018973 136 LAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMG--------DESEKTKELCER-EKIKKVPHF 199 (348)
Q Consensus 136 ~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~--------d~~~~~~~l~~~-~~V~~~Pt~ 199 (348)
+.++|+|||.|||+||++|+...|.|.++.++|+ ++.++.|++ |..+...+.+++ +++. +|.+
T Consensus 19 ~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~-fp~~ 92 (153)
T TIGR02540 19 KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT-FPMF 92 (153)
T ss_pred HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC-CCcc
Confidence 3368999999999999999999999999999986 489999985 323345666764 6764 5644
No 215
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.74 E-value=4.9e-08 Score=89.54 Aligned_cols=105 Identities=18% Similarity=0.322 Sum_probs=79.2
Q ss_pred cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE 310 (348)
Q Consensus 231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~ 310 (348)
..+..+.+.++|-+.+... ..+..|||+||.+.++.|..+...|..|+.+|+ .++|++|..+..+ +..+|.+..
T Consensus 125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~----~~~~f~~~~ 198 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP----ASENFPDKN 198 (265)
T ss_dssp -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC----TTTTS-TTC
T ss_pred ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC----cccCCcccC
Confidence 3466676777777777543 245689999999999999999999999999996 4999999987654 567899999
Q ss_pred cceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 018973 311 VPTFLFIRDGQIRGRYVGS--------GKGELIGEILRY 341 (348)
Q Consensus 311 ~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~ 341 (348)
+||+++|++|..++.++|. +..+|..+|.++
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999999999874 355777777654
No 216
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.73 E-value=1.1e-07 Score=82.88 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=68.0
Q ss_pred CcE-EEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCC--------chhHHHHHH-hC---------------
Q 018973 253 QKL-IVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDE--------NDSCMQFLR-DM--------------- 306 (348)
Q Consensus 253 ~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~--------~~~~~~l~~-~~--------------- 306 (348)
+++ +++.+|++||++|+...|.|.++.+++++ .+.++.|+++. .++..++.+ ++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 564 45566999999999999999999999964 38888887531 122333322 21
Q ss_pred ---------------------CCCccce----EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 307 ---------------------NVVEVPT----FLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 307 ---------------------~V~~~PT----l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
++.++|+ +++.++|+++.++.|. +.+++.+.|++++.
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 2346793 7888999999999999 88889999988764
No 217
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.72 E-value=8e-08 Score=69.88 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=56.0
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELI 335 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~ 335 (348)
+..|+++||++|+.+.+.|.+ .++.+..+|+++++. .+++.+.+++.++|++++. |+. +.|.+.++|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHH
Confidence 568999999999999877765 247888999987653 3457788999999999874 654 5677888888
Q ss_pred HHH
Q 018973 336 GEI 338 (348)
Q Consensus 336 ~~l 338 (348)
++|
T Consensus 71 ~~i 73 (74)
T TIGR02196 71 QLL 73 (74)
T ss_pred HHh
Confidence 776
No 218
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.71 E-value=2.6e-08 Score=86.27 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEE------EEEeCCCch--------------------------hHH
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEF------ILVMGDESE--------------------------KTK 185 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f------~~vd~d~~~--------------------------~~~ 185 (348)
.+|+++|.|||+||++|+...|.+++|.++ ++.+ +.||.|+.. ...
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 699999999999999999999999999654 2444 667766521 112
Q ss_pred HHHHHcCcCCCCe--EEEeeccccccccccC
Q 018973 186 ELCEREKIKKVPH--FSFYKSMEKIHEEEGI 214 (348)
Q Consensus 186 ~l~~~~~V~~~Pt--~~~~~~g~~v~~~~G~ 214 (348)
.+...||+.++|+ |++-++|+.+....|.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~ 166 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGA 166 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCC
Confidence 4566888989865 3556789988888885
No 219
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.71 E-value=6.5e-08 Score=75.68 Aligned_cols=85 Identities=29% Similarity=0.488 Sum_probs=69.8
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC-CchhHHHHHHhCC--CCccceEEEEeCCeEEEEEeC-
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD-ENDSCMQFLRDMN--VVEVPTFLFIRDGQIRGRYVG- 328 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~~~l~~~~~--V~~~PTl~~~~~G~~v~~~~G- 328 (348)
++++++.||++||++|+.+.|.+.++++.+...+.++.+|.. ...+ +...|+ +..+|+++++.+|+.+....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 108 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVAVRSIPTLLLFKDGKEVDRLVGG 108 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhhhccCCeEEEEeCcchhhhhhhc
Confidence 679999999999999999999999999999766899999996 5555 888888 899999999988877666665
Q ss_pred -C-ChHHHHHHHHH
Q 018973 329 -S-GKGELIGEILR 340 (348)
Q Consensus 329 -~-~~~~L~~~l~~ 340 (348)
. ....+......
T Consensus 109 ~~~~~~~~~~~~~~ 122 (127)
T COG0526 109 KVLPKEALIDALGE 122 (127)
T ss_pred ccCCHHHHHHHhcc
Confidence 4 55555555443
No 220
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.69 E-value=3.5e-08 Score=82.16 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=56.3
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC----CcEEEEEeCCCc----------------------hhHHHHHHHc
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN----DVEFILVMGDES----------------------EKTKELCERE 191 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~----~v~f~~vd~d~~----------------------~~~~~l~~~~ 191 (348)
.||.|.++|.|.||+|||.+-|.|.++.++.. .+.++-|+-|.+ +...+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 58999999999999999999999988877642 366666666543 2346889999
Q ss_pred CcCCCCeEEEee-cccccc
Q 018973 192 KIKKVPHFSFYK-SMEKIH 209 (348)
Q Consensus 192 ~V~~~Pt~~~~~-~g~~v~ 209 (348)
+|.++|++++.+ +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999987775 565554
No 221
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.4e-08 Score=99.31 Aligned_cols=84 Identities=17% Similarity=0.381 Sum_probs=69.3
Q ss_pred cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC---CcEEEEEEECCCchhHHHHHHhCC
Q 018973 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA---GTVVFARMNGDENDSCMQFLRDMN 307 (348)
Q Consensus 231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~~~l~~~~~ 307 (348)
++++.+ +.+.|...+... ++..+|.||++|||+|+.+.|.++++++... +-+.++.|||-+..+ ..+|++|+
T Consensus 39 D~ii~L-d~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~ 113 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFS 113 (606)
T ss_pred CCeEEe-ehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcC
Confidence 555555 567888888763 5788999999999999999999999998874 448888999875442 45999999
Q ss_pred CCccceEEEEeC
Q 018973 308 VVEVPTFLFIRD 319 (348)
Q Consensus 308 V~~~PTl~~~~~ 319 (348)
|.++||+.+|..
T Consensus 114 V~~~Ptlryf~~ 125 (606)
T KOG1731|consen 114 VSGYPTLRYFPP 125 (606)
T ss_pred CCCCceeeecCC
Confidence 999999999954
No 222
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.69 E-value=3.9e-08 Score=71.53 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=51.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeeccccccccccCCCCcc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQL 219 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l 219 (348)
+..|+++||++|+.+.+.|++ .++.+..+|+++.++ ..++.+.+++.++|++++. |+. +.|.+++.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHH
Confidence 568999999999999988876 468899999887543 3457888999999999885 543 455444433
No 223
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.67 E-value=2.7e-07 Score=79.36 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCc--------hhHH------------------HHHH
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDEN--------DSCM------------------QFLR 304 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~--------~~~~------------------~l~~ 304 (348)
.+++++|+||++||+.|....+.+.++.++++ .++.|+.|+.+.. ...+ .+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 36899999999999999999999999999996 4589999887642 1212 2455
Q ss_pred hCCCCccceEEEE-eCCeEEEEEe---------CC-ChHHHHHHHHHHhCC
Q 018973 305 DMNVVEVPTFLFI-RDGQIRGRYV---------GS-GKGELIGEILRYQGV 344 (348)
Q Consensus 305 ~~~V~~~PTl~~~-~~G~~v~~~~---------G~-~~~~L~~~l~~~~~~ 344 (348)
.|++..+|+++++ ++|+++.... +. +..++.+.|+..+..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 6889999966555 7999886531 22 568899999887643
No 224
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.65 E-value=9.1e-08 Score=79.66 Aligned_cols=73 Identities=15% Similarity=0.367 Sum_probs=58.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc---EEEEEEECCCch----------------------hHHHHHHhC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT---VVFARMNGDEND----------------------SCMQFLRDM 306 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~----------------------~~~~l~~~~ 306 (348)
.+|.|.++|.|.||+||+.+.|.++++.++..+. +.++.|+.|... ..+++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4799999999999999999999999998888655 666666665322 245688889
Q ss_pred CCCccceEEEE-eCCeEEE
Q 018973 307 NVVEVPTFLFI-RDGQIRG 324 (348)
Q Consensus 307 ~V~~~PTl~~~-~~G~~v~ 324 (348)
+|.++|++++. .+|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999998777 5887664
No 225
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.65 E-value=9.1e-08 Score=81.57 Aligned_cols=95 Identities=15% Similarity=0.242 Sum_probs=84.7
Q ss_pred CCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC
Q 018973 227 GDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM 306 (348)
Q Consensus 227 ~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~ 306 (348)
...++....+.+..+|-+.... ...||+.||-+.-..|+-|...|+.|++.+-+ .+|++||++..+- |+.++
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~~k----S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PF---lv~kL 133 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEVKK----SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPF---LVTKL 133 (211)
T ss_pred HcCCceEEEeccHHHHHHHhhc----CceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCce---eeeee
Confidence 3456777788888888777764 57899999999999999999999999999865 8999999999998 99999
Q ss_pred CCCccceEEEEeCCeEEEEEeCC
Q 018973 307 NVVEVPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 307 ~V~~~PTl~~~~~G~~v~~~~G~ 329 (348)
+|..+|++++|++|+.+.+++|.
T Consensus 134 ~IkVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 134 NIKVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeeEeeeEEEEEcCEEEEEEeeH
Confidence 99999999999999999999986
No 226
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.3e-07 Score=74.33 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEECCCc-------------hhHHHHHHhCCCCccceEE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNGDEN-------------DSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~-------------~~~~~l~~~~~V~~~PTl~ 315 (348)
.++..+++|..+.|..|.++...+ +++.+.+.+++.++++++... ...++|++.|+|+++||++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 588999999999999999998776 556666667788888887522 1245799999999999999
Q ss_pred EE-eCCeEEEEEeCC-ChHHHHHHHH
Q 018973 316 FI-RDGQIRGRYVGS-GKGELIGEIL 339 (348)
Q Consensus 316 ~~-~~G~~v~~~~G~-~~~~L~~~l~ 339 (348)
+| ++|+.+..+-|. +++++...++
T Consensus 121 Ffdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 121 FFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred EEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99 579999999999 8888776554
No 227
>smart00594 UAS UAS domain.
Probab=98.63 E-value=1.7e-07 Score=76.15 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHHHHHHhc--CCCEEEEEEeCCCCHHHHhhhhH------HHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 128 EEFDEALRLA--KNKLVVVEFAASRSLDSSKIYPF------MVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 128 ~~f~~~l~~~--~~k~vvV~F~a~wC~~C~~~~p~------l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
..|+++++.+ .+|+++|+|+++||++|+.+... +.++.++ ++.+..+|++..+ ..++++.|+++++|++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~e-g~~l~~~~~~~~~P~~ 90 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSE-GQRVSQFYKLDSFPYV 90 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChh-HHHHHHhcCcCCCCEE
Confidence 3555555544 37899999999999999998754 3333332 4888889988655 5789999999999999
Q ss_pred EEee
Q 018973 200 SFYK 203 (348)
Q Consensus 200 ~~~~ 203 (348)
+++.
T Consensus 91 ~~l~ 94 (122)
T smart00594 91 AIVD 94 (122)
T ss_pred EEEe
Confidence 8884
No 228
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.61 E-value=2.2e-07 Score=76.75 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCcc
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~~ 311 (348)
.+++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..+.....++ +.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3688999999 68999999999999999888853 48888888765444333 4445777777
Q ss_pred ---------ceEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 018973 312 ---------PTFLFI-RDGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 312 ---------PTl~~~-~~G~~v~~~~G~-~~~~L~~~l 338 (348)
|+.+++ ++|+++..+.|. ..+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 865444 689999999999 666666543
No 229
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.59 E-value=3.2e-07 Score=73.66 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=60.2
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeC-------CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH----HHHH--
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGL-------KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM----QFLR-- 304 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~----~l~~-- 304 (348)
.-+++.+.++.....+++++|+|++ +||+.|+...|.+++.....+++..++.+.+...+..+ .+.+
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 4567888887655567899999986 59999999999999998887777889988875433111 2445
Q ss_pred hCCCCccceEEEEeCCeEEEEEeCC
Q 018973 305 DMNVVEVPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 305 ~~~V~~~PTl~~~~~G~~v~~~~G~ 329 (348)
++++.++||++-+..+ .++.+.
T Consensus 84 ~~~l~~IPTLi~~~~~---~rL~e~ 105 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG---ERLVEE 105 (119)
T ss_dssp CC---SSSEEEECTSS----EEEHH
T ss_pred eeeeeecceEEEECCC---Cccchh
Confidence 5999999999999877 445554
No 230
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.59 E-value=2.6e-07 Score=63.96 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=52.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM 205 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g 205 (348)
++.||++||++|+.+.+.+.++.....++.+..+|+++.....+....+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 578999999999999999999955556799999999985542222358999999999999876
No 231
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.58 E-value=2.6e-06 Score=79.01 Aligned_cols=209 Identities=12% Similarity=0.151 Sum_probs=127.9
Q ss_pred CCCCCCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHh-----hhhHHHHHH-HH--cCCcEEEEEeCCCchhHHH
Q 018973 115 APRDERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSK-----IYPFMVDLS-RQ--CNDVEFILVMGDESEKTKE 186 (348)
Q Consensus 115 ~~~~~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~-----~~p~l~~la-~~--~~~v~f~~vd~d~~~~~~~ 186 (348)
..+..+|.++ |..+|.++++ +....+|+|+.+--..=-. +...+-+|+ +. ..++.|+.||..+ ...
T Consensus 30 YDGkDRVi~L-neKNfk~~lK--kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K---d~k 103 (383)
T PF01216_consen 30 YDGKDRVIDL-NEKNFKRALK--KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK---DAK 103 (383)
T ss_dssp -SSS--CEEE--TTTHHHHHH--H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT---THH
T ss_pred CCCccceEEc-chhHHHHHHH--hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH---HHH
Confidence 4456678888 8999999998 5788889999876332211 112223343 32 3569999999998 567
Q ss_pred HHHHcCcCCCCeEEEeeccccccccccCCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCCh
Q 018973 187 LCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCG 266 (348)
Q Consensus 187 l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~ 266 (348)
+++++|+...+++.+|++|+.+....-..++.|+..+...-. .++..+.+..+++.+-.- ...+.+|-|+.+.-+
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~e--dPVeiIn~~~e~~~Fe~i---ed~~klIGyFk~~~s 178 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLE--DPVEIINNKHELKAFERI---EDDIKLIGYFKSEDS 178 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHS--SSEEEE-SHHHHHHHHH-----SS-EEEEE-SSTTS
T ss_pred HHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcc--cchhhhcChhhhhhhhhc---ccceeEEEEeCCCCc
Confidence 999999999999999999999975533556777765544322 456666676666655432 234556665554322
Q ss_pred hhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC--CeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 267 PCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD--GQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 267 ~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~--G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
. ....++++|.++.+.++|+.+= ++. +++++++. +=.+-+|+- .+.+..-... ++++|.+|++++..
T Consensus 179 ~---~yk~FeeAAe~F~p~IkFfAtf---d~~---vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 179 E---HYKEFEEAAEHFQPYIKFFATF---DKK---VAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp H---HHHHHHHHHHHCTTTSEEEEE----SHH---HHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred H---HHHHHHHHHHhhcCceeEEEEe---cch---hhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 2 2345789999998888888763 333 99999986 557888852 4444432333 89999999999865
Q ss_pred C
Q 018973 344 V 344 (348)
Q Consensus 344 ~ 344 (348)
.
T Consensus 249 p 249 (383)
T PF01216_consen 249 P 249 (383)
T ss_dssp -
T ss_pred h
Confidence 4
No 232
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.57 E-value=1e-06 Score=70.80 Aligned_cols=101 Identities=12% Similarity=0.168 Sum_probs=76.2
Q ss_pred hHHHHhhhcccCCcEEEEEEeCC----CChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLK----HCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~----wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
.+++.+..++.+.|.++|+++++ ||..|+.... =.++.+-+..++.+...|++..+. .++++.+++.++|++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEG-YRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHH-HHHHHHhCCCCCCEEEE
Confidence 34555555555799999999999 8899977631 133333334468899999987653 66999999999999877
Q ss_pred E--e--CCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 317 I--R--DGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 317 ~--~--~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+ + +.+++.++.|. ++++|...|.....
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 7 2 34678999999 99999999887643
No 233
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.5e-07 Score=71.95 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=71.2
Q ss_pred CChhhHHHHhhhcccCCcEEEEEEeC--------CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH----HHHH
Q 018973 237 HSKEDVEKLIDDHKVDQKLIVLDVGL--------KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM----QFLR 304 (348)
Q Consensus 237 ~s~~~~~~~l~~~~~~~k~vvV~F~a--------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~----~l~~ 304 (348)
...++|++.+++.. +++.++++|++ +|||.|.+..|.+.+..++.+.++.|+.+++.+.+..+ .+.+
T Consensus 10 ~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 10 PGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred chHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 34578888887764 34458999986 69999999999999999988888999999987654221 2566
Q ss_pred hCCC-CccceEEEEeCCeEEEEEeCC--ChHHHHH
Q 018973 305 DMNV-VEVPTFLFIRDGQIRGRYVGS--GKGELIG 336 (348)
Q Consensus 305 ~~~V-~~~PTl~~~~~G~~v~~~~G~--~~~~L~~ 336 (348)
..++ .++||++-++++ ..+..|. ..+.|.+
T Consensus 89 d~~~lt~vPTLlrw~~~--~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKRQ--PQRLDGLQCLNDHLVE 121 (128)
T ss_pred CCCceeecceeeEEcCc--cccchHhHhhHHHHHH
Confidence 6677 899999998752 3444554 4444443
No 234
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.51 E-value=2.9e-07 Score=75.44 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH---cCcCCCCeEEEee-
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER---EKIKKVPHFSFYK- 203 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~---~~V~~~Pt~~~~~- 203 (348)
++..+.++....+.-++-|..+|||.|+..-|.|.++++..+++.+-.+..|+ ..++..+ .|.+.+|||+++.
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~---~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE---NKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH---HHHHTTTTTT-SS--SSEEEEE-T
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC---ChhHHHHHHhCCCeecCEEEEEcC
Confidence 44455666556778999999999999999999999999999887666666555 4455554 4789999999995
Q ss_pred ccccccccccC
Q 018973 204 SMEKIHEEEGI 214 (348)
Q Consensus 204 ~g~~v~~~~G~ 214 (348)
+|+++.+++..
T Consensus 107 ~~~~lg~wger 117 (129)
T PF14595_consen 107 DGKELGRWGER 117 (129)
T ss_dssp T--EEEEEESS
T ss_pred CCCEeEEEcCC
Confidence 57888776553
No 235
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.49 E-value=4.4e-07 Score=66.86 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=43.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH--cCcCCCCeEEEeecccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER--EKIKKVPHFSFYKSMEKIH 209 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~--~~V~~~Pt~~~~~~g~~v~ 209 (348)
++.|+++||++|+++.+.|.++ ++.|-.+|+++.+...+...+ +++..+|++ ++.+|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 6789999999999999999775 345567888775432222222 489999997 466776554
No 236
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.49 E-value=9.4e-07 Score=76.81 Aligned_cols=90 Identities=18% Similarity=0.314 Sum_probs=68.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECC--------CchhHHHHHH-hCCCC------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGD--------ENDSCMQFLR-DMNVV------------ 309 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~--------~~~~~~~l~~-~~~V~------------ 309 (348)
.+++++|.|||+||+.|.+ .+.|+++.++|++ .+.++.+.++ ..++++++++ ++++.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE 102 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence 4799999999999999974 7899999999964 4888888774 2345666776 55541
Q ss_pred -----------ccc--------------------------------eEEEEeCCeEEEEEeCC-ChHH--HHHHHHHHh
Q 018973 310 -----------EVP--------------------------------TFLFIRDGQIRGRYVGS-GKGE--LIGEILRYQ 342 (348)
Q Consensus 310 -----------~~P--------------------------------Tl~~~~~G~~v~~~~G~-~~~~--L~~~l~~~~ 342 (348)
..| .|++.++|+++.|+... .+.+ |.+.|++++
T Consensus 103 ~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 103 GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence 233 46777999999999877 4444 888888776
No 237
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.49 E-value=4.7e-07 Score=75.28 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCCEEEEEEeCCC-CHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 138 KNKLVVVEFAASR-SLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 138 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
+++++||.||+.| |++|+...|.|.++.++++++.++.|+.|......+..+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 6889999999999 69999999999999999989999999998755456666676665454
No 238
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.48 E-value=5.1e-07 Score=77.49 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=52.0
Q ss_pred CCCEEEEEEeCCC-CHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 138 KNKLVVVEFAASR-SLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 138 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
+++++||.||++| |++|+...|.|.++++++.++.++.|..|......++++++++..+|
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~ 103 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVI 103 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCce
Confidence 6889999999999 99999999999999999888999999998765567788888776433
No 239
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.47 E-value=5.9e-07 Score=78.26 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=47.3
Q ss_pred CCCEE-EEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC--------chhHHHH-HHHcCcCCCCeEE-Eeec
Q 018973 138 KNKLV-VVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE--------SEKTKEL-CEREKIKKVPHFS-FYKS 204 (348)
Q Consensus 138 ~~k~v-vV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~--------~~~~~~l-~~~~~V~~~Pt~~-~~~~ 204 (348)
++++| ++.|||+||++|+...|.|.++.++|. ++.++.|+++. .++..+. .+++++. +|.+. +..+
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~-fpv~~d~d~~ 117 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVD-FPLFQKIEVN 117 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-CCCceEEecC
Confidence 57754 566799999999999999999999986 48999998642 1223333 3466664 66653 2334
Q ss_pred ccc
Q 018973 205 MEK 207 (348)
Q Consensus 205 g~~ 207 (348)
|+.
T Consensus 118 g~~ 120 (183)
T PTZ00256 118 GEN 120 (183)
T ss_pred CCC
Confidence 443
No 240
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.47 E-value=6e-07 Score=77.17 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=57.4
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCc--------h------------------hHHHHHH
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDES--------E------------------KTKELCE 189 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~--------~------------------~~~~l~~ 189 (348)
+++++||+||++||+.|....+.|.++.++|+ ++.|+.|..|.. + ....+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57999999999999999999999999999987 489999987641 1 1235667
Q ss_pred HcCcCCCCeEEEee-cccccc
Q 018973 190 REKIKKVPHFSFYK-SMEKIH 209 (348)
Q Consensus 190 ~~~V~~~Pt~~~~~-~g~~v~ 209 (348)
.|+|..+|+++++. +|+.+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~ 124 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVY 124 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEE
Confidence 88888889877774 666553
No 241
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.45 E-value=1.1e-06 Score=70.58 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=58.7
Q ss_pred ecCHHHHHHHHHh--cCCCEEEEEEeC-------CCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhH----HHHHH
Q 018973 124 VHSIEEFDEALRL--AKNKLVVVEFAA-------SRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKT----KELCE 189 (348)
Q Consensus 124 v~s~~~f~~~l~~--~~~k~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~----~~l~~ 189 (348)
|..-++|.+.++. ..+++++|.|++ +||+.|+...|.+++.....+ +..|+.|.+.+.+.. ..+-.
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4567899999886 457899999996 599999999999999888765 489998987653211 12333
Q ss_pred --HcCcCCCCeEEEeecccc
Q 018973 190 --REKIKKVPHFSFYKSMEK 207 (348)
Q Consensus 190 --~~~V~~~Pt~~~~~~g~~ 207 (348)
+++++++||++-+.+++.
T Consensus 82 ~p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp --CC---SSSEEEECTSS-E
T ss_pred cceeeeeecceEEEECCCCc
Confidence 599999999999987643
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.45 E-value=1.4e-06 Score=70.26 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=59.2
Q ss_pred CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCC--
Q 018973 252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVV-- 309 (348)
Q Consensus 252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~-- 309 (348)
.+++++|.||+. ||+.|....+.|.++.++++. ++.++.|..+..++.++ +++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 479999999999 999999999999999998864 59999999886654443 45557887
Q ss_pred ----ccce-EEEEeCCeEEEE
Q 018973 310 ----EVPT-FLFIRDGQIRGR 325 (348)
Q Consensus 310 ----~~PT-l~~~~~G~~v~~ 325 (348)
.+|+ +++.++|+++++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSEESEEEEEEETTSBEEEE
T ss_pred cCCceEeEEEEECCCCEEEeC
Confidence 8896 455578888753
No 243
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.44 E-value=4.4e-07 Score=75.00 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC
Q 018973 138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK 192 (348)
Q Consensus 138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~ 192 (348)
++++++|.|| +.||+.|....+.|.++.+++. ++.++.|..|..+...+.+++++
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 5789999999 5899999999999999998874 58899988876544444444443
No 244
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.43 E-value=1.4e-06 Score=72.34 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=64.1
Q ss_pred CCcEEEEEEeCCC-ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh--------------------HHHHHHhCCCCc
Q 018973 252 DQKLIVLDVGLKH-CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS--------------------CMQFLRDMNVVE 310 (348)
Q Consensus 252 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--------------------~~~l~~~~~V~~ 310 (348)
.+++++|+||+.| |++|+...+.|.++.+++. ++.++.|+.+.... ...+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 3689999999998 6999999999999999985 58899988864221 134666777753
Q ss_pred ------cce-EEEEeCCeEEEEEeCC---ChHHHHHHH
Q 018973 311 ------VPT-FLFIRDGQIRGRYVGS---GKGELIGEI 338 (348)
Q Consensus 311 ------~PT-l~~~~~G~~v~~~~G~---~~~~L~~~l 338 (348)
.|+ +++.++|+++....|. +..++.+.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 575 5555799999998875 345555544
No 245
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.41 E-value=1.4e-06 Score=60.23 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=51.9
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG 320 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G 320 (348)
++.||..||+.|+++.+.+.++ .....++.+..++++...+.......+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999988 44445699999999988763333358999999999999877
No 246
>PLN02412 probable glutathione peroxidase
Probab=98.41 E-value=7e-07 Score=76.62 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=48.5
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhH-HHHHHHcCcCCCCeEE
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKT-KELCEREKIKKVPHFS 200 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~-~~l~~~~~V~~~Pt~~ 200 (348)
++++|||.||++||++|+...|.|.++.++|.+ +.++.|+++. .++. +.+++++++. +|.+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE-FPIFD 100 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCC-CceEe
Confidence 679999999999999999999999999999974 8999998752 1122 2235677875 67653
No 247
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.38 E-value=1e-06 Score=72.21 Aligned_cols=90 Identities=20% Similarity=0.386 Sum_probs=54.4
Q ss_pred HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh---CCCCccceEEEE-
Q 018973 242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD---MNVVEVPTFLFI- 317 (348)
Q Consensus 242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~---~~V~~~PTl~~~- 317 (348)
..+.++.. .++..++.|..+|||.|....|.+.++++..+ ++.+-.+..|++.+ +.++ .|...+||++++
T Consensus 32 ~~~~l~~~--~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~e---l~~~~lt~g~~~IP~~I~~d 105 (129)
T PF14595_consen 32 QIEKLKSI--QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKE---LMDQYLTNGGRSIPTFIFLD 105 (129)
T ss_dssp HHHHHHT----S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHH---HTTTTTT-SS--SSEEEEE-
T ss_pred HHHHHHhc--CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChh---HHHHHHhCCCeecCEEEEEc
Confidence 33344433 46778899999999999999999999999864 57777776666665 5554 467899999999
Q ss_pred eCCeEEEEEeCCChHHHHHHH
Q 018973 318 RDGQIRGRYVGSGKGELIGEI 338 (348)
Q Consensus 318 ~~G~~v~~~~G~~~~~L~~~l 338 (348)
++|+.+++..... +.+.+.+
T Consensus 106 ~~~~~lg~wgerP-~~~~~~~ 125 (129)
T PF14595_consen 106 KDGKELGRWGERP-KEVQELV 125 (129)
T ss_dssp TT--EEEEEESS--HHHH---
T ss_pred CCCCEeEEEcCCC-HHHhhcc
Confidence 5688888876652 3344333
No 248
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.37 E-value=2.6e-06 Score=62.64 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=50.2
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh--CCCCccceEEEEeCCeEEEEEeCCChHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD--MNVVEVPTFLFIRDGQIRGRYVGSGKGEL 334 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~--~~V~~~PTl~~~~~G~~v~~~~G~~~~~L 334 (348)
++.||++||++|+++.+.|.++. +.|-.+|+++.+...+..++ +++.++|++ ++.+|+.+. ..+..++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~ 71 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQV 71 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHH
Confidence 56899999999999988876642 45667888877653333322 489999997 467886532 3355666
Q ss_pred HHHHH
Q 018973 335 IGEIL 339 (348)
Q Consensus 335 ~~~l~ 339 (348)
.+.|+
T Consensus 72 ~~~l~ 76 (77)
T TIGR02200 72 KAKLQ 76 (77)
T ss_pred HHHhh
Confidence 66554
No 249
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.37 E-value=4.3e-06 Score=61.93 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=55.4
Q ss_pred EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeC-C-ChHHHHH
Q 018973 259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVG-S-GKGELIG 336 (348)
Q Consensus 259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G-~-~~~~L~~ 336 (348)
.+++++|+.|..+...++++...++ +.+-.+|..+.++ + ++|||.++|++++ ||+. ++.| . +.++|.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~---~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEE---I-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKE 73 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHH---H-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHH---H-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHH
Confidence 3467889999999999999999983 7777777765554 5 9999999999976 7875 4678 4 7888888
Q ss_pred HHH
Q 018973 337 EIL 339 (348)
Q Consensus 337 ~l~ 339 (348)
+|+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.36 E-value=1.8e-06 Score=71.83 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=36.4
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchh
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDS 298 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~ 298 (348)
+..++++|++.||++|+...+.|.++.+++. ..+.++.|+.+..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 3455665679999999999999999999985 348889888775443
No 251
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=6.4e-06 Score=65.39 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=83.4
Q ss_pred eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313 (348)
Q Consensus 234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT 313 (348)
..+++..+.++.+... ..+.+||-|+-.|-+.|.++...|.++++...+-..++-+|+++-++ +.+-|++...||
T Consensus 6 p~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~---~~~~~~l~~p~t 80 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD---FVKMYELYDPPT 80 (142)
T ss_pred cccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh---hhhhhcccCCce
Confidence 4566778888887754 68999999999999999999999999999987667888899998776 999999999998
Q ss_pred EEEEeCCeEE---------EEEeCC--ChHHHHHHHHHH
Q 018973 314 FLFIRDGQIR---------GRYVGS--GKGELIGEILRY 341 (348)
Q Consensus 314 l~~~~~G~~v---------~~~~G~--~~~~L~~~l~~~ 341 (348)
+++|-+++-+ .++.++ +++++++.++..
T Consensus 81 vmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 81 VMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred EEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 8777555433 234444 788888888764
No 252
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.35 E-value=2.9e-06 Score=73.14 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=66.6
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR 304 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~ 304 (348)
.+++++|+|| +.||+.|....+.|.++.+++.+ ++.++.|..+.... ..++++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3689999999 89999999999999999999853 47777777664321 113555
Q ss_pred hCCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 018973 305 DMNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRYQ 342 (348)
Q Consensus 305 ~~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~~ 342 (348)
.|++. .+|+ +++.++|+++..+.+. +.+++.+.|+.+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67775 4675 4555799999988654 4567777776653
No 253
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.33 E-value=1.8e-06 Score=72.93 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=47.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHHhC--------CCCccceEEEE-eC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLRDM--------NVVEVPTFLFI-RD 319 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~--------~V~~~PTl~~~-~~ 319 (348)
.+|+++|.++.+||..|+.|... + .++++.+..++.-+++|.++.++ +.+.| +..++|+.+|. .+
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcCCCCCCceEEECCC
Confidence 58999999999999999998753 3 56666666668899999999998 55554 78899976555 79
Q ss_pred CeEEEE
Q 018973 320 GQIRGR 325 (348)
Q Consensus 320 G~~v~~ 325 (348)
|+.+..
T Consensus 113 g~p~~~ 118 (163)
T PF03190_consen 113 GKPFFG 118 (163)
T ss_dssp S-EEEE
T ss_pred CCeeee
Confidence 988765
No 254
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.32 E-value=1.8e-06 Score=69.55 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=47.9
Q ss_pred CCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC
Q 018973 138 KNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK 192 (348)
Q Consensus 138 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~ 192 (348)
+++++||.||++ ||++|+...+.|.++.++++ ++.++.|..|..++.+++.++++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 579999999999 99999999999999999876 69999999988665666666666
No 255
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.32 E-value=5e-06 Score=71.30 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCcEEEEEEeCCC-ChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH--------------------HHHHhCCCCc
Q 018973 252 DQKLIVLDVGLKH-CGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM--------------------QFLRDMNVVE 310 (348)
Q Consensus 252 ~~k~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~--------------------~l~~~~~V~~ 310 (348)
.+++++|+||+.| |++|....+.|.++.+++. ++.++.|+.|.....+ .+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4789999999999 9999999999999999984 6888888876422212 4666778766
Q ss_pred cc---------eE-EEEeCCeEEEEEeCC
Q 018973 311 VP---------TF-LFIRDGQIRGRYVGS 329 (348)
Q Consensus 311 ~P---------Tl-~~~~~G~~v~~~~G~ 329 (348)
.| +. ++.++|+++..+.+.
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECC
Confidence 66 54 555799999888643
No 256
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.32 E-value=1.3e-06 Score=75.94 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=52.5
Q ss_pred HhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCC--------CchhHHHHHH-HcCcCCCCeEEEe-
Q 018973 135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGD--------ESEKTKELCE-REKIKKVPHFSFY- 202 (348)
Q Consensus 135 ~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d--------~~~~~~~l~~-~~~V~~~Pt~~~~- 202 (348)
++.++++|||.|||+||++|+. .|.|++|.++|. ++.++.+.++ ..++..++++ +|++. +|.+.-.
T Consensus 21 s~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~d 98 (183)
T PRK10606 21 EKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIE 98 (183)
T ss_pred HHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEc
Confidence 3447899999999999999975 889999999996 4899999874 2344567776 68874 5654322
Q ss_pred ecccc
Q 018973 203 KSMEK 207 (348)
Q Consensus 203 ~~g~~ 207 (348)
.+|+.
T Consensus 99 vnG~~ 103 (183)
T PRK10606 99 VNGEG 103 (183)
T ss_pred cCCCC
Confidence 35544
No 257
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=9.6e-06 Score=64.40 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=76.4
Q ss_pred eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPHFS 200 (348)
Q Consensus 122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 200 (348)
-..+|..+.++++.....++||+.|...|-+.|..+...|.++++...+ +.++-+|+|+ .+++.+-|++...||++
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYDPPTVM 82 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccCCceEE
Confidence 3567889999999888899999999999999999999999999999888 8999999998 67799999999999999
Q ss_pred Eeecccccc
Q 018973 201 FYKSMEKIH 209 (348)
Q Consensus 201 ~~~~g~~v~ 209 (348)
||-+++-..
T Consensus 83 fFfn~kHmk 91 (142)
T KOG3414|consen 83 FFFNNKHMK 91 (142)
T ss_pred EEEcCceEE
Confidence 888776554
No 258
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.30 E-value=4.9e-06 Score=70.11 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=60.8
Q ss_pred CCcEEEEEEeCC-CChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCcc
Q 018973 252 DQKLIVLDVGLK-HCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVEV 311 (348)
Q Consensus 252 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~~ 311 (348)
.+++++|+||+. ||+.|....+.+.++.+++++ ++.++.|+.+..+..++ +++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 468899999976 677899999999999888853 48888888875444333 4445666543
Q ss_pred ------------ce-EEEEeCCeEEEEEeCC-ChHHHH
Q 018973 312 ------------PT-FLFIRDGQIRGRYVGS-GKGELI 335 (348)
Q Consensus 312 ------------PT-l~~~~~G~~v~~~~G~-~~~~L~ 335 (348)
|+ +++.++|+++..+.|. ..+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~ 146 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHD 146 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHH
Confidence 54 5555799999999998 444433
No 259
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.30 E-value=8.4e-06 Score=72.77 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=67.9
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--------hhHHHHHHhCCCCccc
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--------DSCMQFLRDMNVVEVP 312 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--------~~~~~l~~~~~V~~~P 312 (348)
.-++.++.. .++.-+++||.+.|+.|+.+.|.+..++++++ +.+..|++|.. .....++++|+|..+|
T Consensus 110 ~~~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P 185 (215)
T PF13728_consen 110 KRDKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP 185 (215)
T ss_pred HHHHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence 334445544 47888999999999999999999999999994 55555555521 0013489999999999
Q ss_pred eEEEE-eCC-eEEEEEeCC-ChHHHHHHH
Q 018973 313 TFLFI-RDG-QIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 313 Tl~~~-~~G-~~v~~~~G~-~~~~L~~~l 338 (348)
++++. .++ +..-.-.|. +.++|.+-|
T Consensus 186 al~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 186 ALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 87666 455 444444687 888887654
No 260
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.29 E-value=7.3e-06 Score=61.99 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=60.2
Q ss_pred EEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCC--CCccceEEEEeCCeEEEEEeCCChH
Q 018973 256 IVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMN--VVEVPTFLFIRDGQIRGRYVGSGKG 332 (348)
Q Consensus 256 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~--V~~~PTl~~~~~G~~v~~~~G~~~~ 332 (348)
-++.|+.+||++|.+....|.++..++ ..+.+..+|+++.. +..++.+..+ +..+|++++ +|+.++ ..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHH
Confidence 367899999999999999999998775 35888899988653 2233555444 578999764 887653 447
Q ss_pred HHHHHHHHHhCC
Q 018973 333 ELIGEILRYQGV 344 (348)
Q Consensus 333 ~L~~~l~~~~~~ 344 (348)
+|.+++++++|+
T Consensus 74 ~~~~~~~~~~~~ 85 (85)
T PRK11200 74 DFEAYVKENLGL 85 (85)
T ss_pred HHHHHHHHhccC
Confidence 788888887763
No 261
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.27 E-value=3.2e-06 Score=70.33 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=42.8
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchhHHHHHHHcCc
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEKTKELCEREKI 193 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~~~~l~~~~~V 193 (348)
++.||+.|+++||++|+...|.|.++.+++ .++.++.|..|+.+....+.+++++
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 445555566999999999999999999998 4599999998875544455666655
No 262
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.27 E-value=2.4e-06 Score=70.76 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=44.1
Q ss_pred CCCEEEEEEeCCCCHH-HHhhhhHHHHHHHHcCC-----cEEEEEeCCCc----hhHHHHHHHcC
Q 018973 138 KNKLVVVEFAASRSLD-SSKIYPFMVDLSRQCND-----VEFILVMGDES----EKTKELCEREK 192 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~-----v~f~~vd~d~~----~~~~~l~~~~~ 192 (348)
+++++||.||++||++ |....+.|.++.+++.+ +.++.|..|.. +..++.+++++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~ 85 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG 85 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999998 99999999999998753 88888887642 33455666666
No 263
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.27 E-value=7.3e-06 Score=71.63 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=65.3
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN 307 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~ 307 (348)
.+++++|+|| +.||+.|....+.|.++.+++.+ .+.++.|..+.... ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 99999999999999999888852 46777777654211 124677788
Q ss_pred CC------ccc-eEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973 308 VV------EVP-TFLFIRDGQIRGRYVGS-----GKGELIGEILRY 341 (348)
Q Consensus 308 V~------~~P-Tl~~~~~G~~v~~~~G~-----~~~~L~~~l~~~ 341 (348)
+. ..| |+++.++|+++....+. +.+++.+.|+++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 358 45666899999876432 566777766543
No 264
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.26 E-value=7.6e-06 Score=68.32 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=60.8
Q ss_pred cEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH--------------------HHHHHhCCCC--
Q 018973 254 KLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC--------------------MQFLRDMNVV-- 309 (348)
Q Consensus 254 k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~--------------------~~l~~~~~V~-- 309 (348)
++++|.|| ++||+.|....|.+.++.+++++ ++.++.|+.+..+.. ..+++.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 77888887 99999999999999999999853 488888876642222 2356667776
Q ss_pred --ccc--e-EEEEeCCeEEEEEeCC-----ChHHHHHHH
Q 018973 310 --EVP--T-FLFIRDGQIRGRYVGS-----GKGELIGEI 338 (348)
Q Consensus 310 --~~P--T-l~~~~~G~~v~~~~G~-----~~~~L~~~l 338 (348)
++| + +++.++|+++..+.|. +..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 333 4 5555799999988886 344555444
No 265
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.25 E-value=2.6e-06 Score=71.13 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=44.6
Q ss_pred CC-CEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc
Q 018973 138 KN-KLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI 193 (348)
Q Consensus 138 ~~-k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V 193 (348)
++ ++++|.|| ++||++|....|.|.++.+++. ++.++.|..|..+..++..+++++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 44 88888887 9999999999999999999885 589999998875445555556553
No 266
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.25 E-value=6.1e-06 Score=61.80 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.1
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hH-HHHHHhCCCCccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SC-MQFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~-~~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
++.|+++||++|+++.+.|.++. ..+.+.++.+|.+++. +. ..+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 47899999999999999998875 3334677777776443 22 23666789999999854 77654
No 267
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.24 E-value=1.9e-05 Score=63.57 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=79.7
Q ss_pred eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc-
Q 018973 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP- 312 (348)
Q Consensus 234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P- 312 (348)
..+++.-+.++.+... .++.+++-|+-+|-+.|.++...|.++++..++-..++.+|+++-++ +.+.|.+. -|
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd---fn~~yel~-dP~ 76 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD---FNQMYELY-DPC 76 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC---CHHHTTS--SSE
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh---hhcccccC-CCe
Confidence 3466777888887765 68999999999999999999999999999998778999999999888 89999999 88
Q ss_pred eEEEEeCCeEEEE---------EeCC--ChHHHHHHHHHH
Q 018973 313 TFLFIRDGQIRGR---------YVGS--GKGELIGEILRY 341 (348)
Q Consensus 313 Tl~~~~~G~~v~~---------~~G~--~~~~L~~~l~~~ 341 (348)
|+.||-+++-+.- +.+. +++++++.++..
T Consensus 77 tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 77 TVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp EEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred EEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 7877766665532 2233 578888877754
No 268
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.23 E-value=3e-06 Score=63.47 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=46.5
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-h-HHHHHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-K-TKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~-~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|+++||++|+.+.+.|+++.-. +.+.++.||.++.. + ...+.+.+|+..+|++.+ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 5789999999999999999998622 23778888876432 1 234777789999999843 66544
No 269
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.22 E-value=3.8e-06 Score=69.24 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHc--CCcEEEEEeCCCchhHHHHHHHc
Q 018973 138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQC--NDVEFILVMGDESEKTKELCERE 191 (348)
Q Consensus 138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~--~~v~f~~vd~d~~~~~~~l~~~~ 191 (348)
++++++|.|| +.||++|....|.|.++.+++ .++.|+.|..|..+......+++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 6899999999 789999999999999999986 45899999987644333444444
No 270
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.20 E-value=6.8e-06 Score=67.97 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhCC----cEEEEEEECCC
Q 018973 252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMAG----TVVFARMNGDE 295 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~~~ 295 (348)
.+++++|.||++||++ |....+.+.++.+++++ ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3689999999999998 99999999999998864 38888887653
No 271
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.19 E-value=9.8e-06 Score=66.78 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHH-------------------HHHHhCCCCc
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCM-------------------QFLRDMNVVE 310 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~-------------------~l~~~~~V~~ 310 (348)
.+++++|+|| +.||+.|....+.+.++.++++ ..+.++.|..+.....+ .+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 3789999999 7899999999999999998884 34888888876433222 2455567666
Q ss_pred cc---------e-EEEEeCCeEEEEEeCC
Q 018973 311 VP---------T-FLFIRDGQIRGRYVGS 329 (348)
Q Consensus 311 ~P---------T-l~~~~~G~~v~~~~G~ 329 (348)
.| + +++.++|+++.++.|.
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecC
Confidence 55 4 4555789999999887
No 272
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.18 E-value=6.8e-06 Score=62.17 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=51.4
Q ss_pred EEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcC--cCCCCeEEEeecccccc
Q 018973 142 VVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREK--IKKVPHFSFYKSMEKIH 209 (348)
Q Consensus 142 vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~--V~~~Pt~~~~~~g~~v~ 209 (348)
-|+.|+.+||+.|++....|+++..++.++.+..+|+++.+ +..++.+..+ +..+|++.+ +|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc
Confidence 37889999999999999999999998888999999988642 2234555554 589999764 676553
No 273
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.16 E-value=3.5e-05 Score=60.27 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=70.0
Q ss_pred ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCc-cc
Q 018973 235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVE-VP 312 (348)
Q Consensus 235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~-~P 312 (348)
.+.+.++++++++.. .+++++|+=.++.|+-.......|++......+.+.++.+|+-+..+ .-+++++|||.. -|
T Consensus 3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 467889999999875 68999999999999999999999999988887669999999977653 235899999974 59
Q ss_pred eEEEEeCCeEEEEEeCC--ChHHH
Q 018973 313 TFLFIRDGQIRGRYVGS--GKGEL 334 (348)
Q Consensus 313 Tl~~~~~G~~v~~~~G~--~~~~L 334 (348)
.++++++|+.+..-... +.+.|
T Consensus 81 Q~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cEEEEECCEEEEECccccCCHHhc
Confidence 99999999999765543 55544
No 274
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-06 Score=76.45 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=83.8
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P 312 (348)
+..+...++| ... .++..+++||++||.+|.++...+..+++.. .++.|++++.++.++ +++.+.+..+|
T Consensus 3 v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e---is~~~~v~~vp 72 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE---ISNLIAVEAVP 72 (227)
T ss_pred ceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH---HHHHHHHhcCc
Confidence 3445556666 222 4789999999999999999999999999888 569999999999998 99999999999
Q ss_pred eEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 018973 313 TFLFIRDGQIRGRYVGSGKGELIGEILRYQ 342 (348)
Q Consensus 313 Tl~~~~~G~~v~~~~G~~~~~L~~~l~~~~ 342 (348)
+++++..|+.+.++.|.++..+...+..+.
T Consensus 73 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 102 (227)
T KOG0911|consen 73 YFVFFFLGEKVDRLSGADPPFLVSKVEKLA 102 (227)
T ss_pred eeeeeecchhhhhhhccCcHHHHHHHHHhh
Confidence 999999999999999997666666666553
No 275
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.14 E-value=2.2e-05 Score=61.43 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=66.1
Q ss_pred eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCc-hhHHHHHHHcCcC-CCCe
Q 018973 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDES-EKTKELCEREKIK-KVPH 198 (348)
Q Consensus 122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~-~~~~~l~~~~~V~-~~Pt 198 (348)
.++.|.++|+++++++.+++++|+=.++.|+-.......|++.....++ +.++.+|+-+. +--..++++|||+ .-|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4678999999999988899999999999999999999999999999887 99999997663 2234689999998 5699
Q ss_pred EEEeeccccccc
Q 018973 199 FSFYKSMEKIHE 210 (348)
Q Consensus 199 ~~~~~~g~~v~~ 210 (348)
++++++|+.+..
T Consensus 82 ~ili~~g~~v~~ 93 (105)
T PF11009_consen 82 VILIKNGKVVWH 93 (105)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEECCEEEEE
Confidence 999999998853
No 276
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=6.8e-06 Score=64.80 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHhc-CCCEEEEEEeC--------CCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHH----HHHHH
Q 018973 125 HSIEEFDEALRLA-KNKLVVVEFAA--------SRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTK----ELCER 190 (348)
Q Consensus 125 ~s~~~f~~~l~~~-~~k~vvV~F~a--------~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~----~l~~~ 190 (348)
.-.++|++.+++. +++-++|.|++ +||+.|.+.+|.+.+.-+..+. +.|+.|++.+-+..+ .+...
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 3468889888865 56779999997 7999999999999998887664 999999988744222 23445
Q ss_pred cCc-CCCCeEEEeec
Q 018973 191 EKI-KKVPHFSFYKS 204 (348)
Q Consensus 191 ~~V-~~~Pt~~~~~~ 204 (348)
.++ +++||++=|++
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 566 89999998874
No 277
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.13 E-value=5.6e-06 Score=69.78 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCc
Q 018973 138 KNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKI 193 (348)
Q Consensus 138 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V 193 (348)
+++++||.||+. ||+.|....+.|.++.+++. ++.++.|..|..++..+.++++++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~ 87 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELL 87 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 578999999986 67789999999999998874 499999998876666666777665
No 278
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.12 E-value=2.7e-05 Score=67.96 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh----------------------HHHHHHhCC
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS----------------------CMQFLRDMN 307 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~----------------------~~~l~~~~~ 307 (348)
.+++++|+|| +.||+.|....+.|.++.+++.+ ++.++.|+.|.... ...+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3678999999 99999999999999999999853 47788887765322 124677788
Q ss_pred C----Ccc--ce-EEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973 308 V----VEV--PT-FLFIRDGQIRGRYVG-----SGKGELIGEILRYQ 342 (348)
Q Consensus 308 V----~~~--PT-l~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~ 342 (348)
+ .++ |+ +++.++|+++..... .+.+++.+.|+.+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8 356 84 566679999877543 26788888886654
No 279
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.11 E-value=1.7e-05 Score=70.88 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--------hhHHHHHHHcCcCCCCeE
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--------EKTKELCEREKIKKVPHF 199 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--------~~~~~l~~~~~V~~~Pt~ 199 (348)
++-+..|++..++.-++.||.+.|+.|+.+.|.+..++++| ++.++.|++|.. -....+++++||..+|++
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal 187 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPAL 187 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEE
Confidence 34445566666889999999999999999999999999999 666666666631 013568999999999998
Q ss_pred EEeecc
Q 018973 200 SFYKSM 205 (348)
Q Consensus 200 ~~~~~g 205 (348)
++...+
T Consensus 188 ~Lv~~~ 193 (215)
T PF13728_consen 188 FLVNPN 193 (215)
T ss_pred EEEECC
Confidence 777543
No 280
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.09 E-value=4.3e-05 Score=69.62 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=69.9
Q ss_pred HHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc--h------hHHHHHHhCCCCccce
Q 018973 242 VEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN--D------SCMQFLRDMNVVEVPT 313 (348)
Q Consensus 242 ~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--~------~~~~l~~~~~V~~~PT 313 (348)
-++.++.. .++.-+++||...|+.|.++.|.+..++++|+ +.+..|++|.. + ....+++++||..+|+
T Consensus 141 ~~~~i~~l--a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 141 KEKAIQQL--SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHHHH--HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 33444443 46788999999999999999999999999995 55555555433 1 1134889999999997
Q ss_pred EEEE-eC-CeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 314 FLFI-RD-GQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 314 l~~~-~~-G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
+++. .+ ++..---.|. +.++|.+.|....
T Consensus 217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 217 LYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 6555 55 4443344687 9999988887654
No 281
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.04 E-value=1.1e-05 Score=69.59 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcC----cCCCCeEEEeeccccc
Q 018973 138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREK----IKKVPHFSFYKSMEKI 208 (348)
Q Consensus 138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~----V~~~Pt~~~~~~g~~v 208 (348)
+++++||.|| ++||++|....+.|.++++++. ++.++.|..|..+....+.+..+ ...+|.-++......+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 5789999999 8999999999999999999985 48899998886433333444433 3455554444433333
No 282
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.02 E-value=4.4e-05 Score=67.55 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=64.2
Q ss_pred CcEEEE-EEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhC
Q 018973 253 QKLIVL-DVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDM 306 (348)
Q Consensus 253 ~k~vvV-~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~ 306 (348)
++.++| .||++||+.|....+.|.++.+++++ ++.++.|+++.... ...+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 555555 68999999999999999999888853 47777777663211 12466677
Q ss_pred CCC------ccceE-EEEeCCeEEEEE----e-CCChHHHHHHHHHHh
Q 018973 307 NVV------EVPTF-LFIRDGQIRGRY----V-GSGKGELIGEILRYQ 342 (348)
Q Consensus 307 ~V~------~~PTl-~~~~~G~~v~~~----~-G~~~~~L~~~l~~~~ 342 (348)
|+. .+|+. ++.++|+++... . |.+.+++.+.|+.+.
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 874 47965 444799888665 2 338888888887764
No 283
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.01 E-value=4.4e-05 Score=55.02 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=49.3
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-HHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-MQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELI 335 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~ 335 (348)
++.|+.+||++|..+...+.+. .+.+..+|++..... .++.+..++..+|++++ +| ..+.|.+.+.|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHH
Confidence 5788999999999987766652 366777888765542 23444447899999976 55 345677777777
Q ss_pred HHH
Q 018973 336 GEI 338 (348)
Q Consensus 336 ~~l 338 (348)
++|
T Consensus 71 ~~~ 73 (73)
T cd02976 71 ALL 73 (73)
T ss_pred hhC
Confidence 653
No 284
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.00 E-value=3.7e-05 Score=53.95 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=44.4
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeeccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
|+.|..+||++|++....|++ .++.|-.+|+++.+ ...++.+..|...+|++.+ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 578999999999999988855 45888888888764 3344555559999999876 554
No 285
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.00 E-value=4.5e-05 Score=57.84 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=56.6
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCC--CccceEEEEeCCeEEEEEeCCChHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNV--VEVPTFLFIRDGQIRGRYVGSGKGE 333 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V--~~~PTl~~~~~G~~v~~~~G~~~~~ 333 (348)
++.|..+||++|.++...|.++..++. .+.+..+|++... ..+++.+..+- ..+|++++ +|+.+ .| .++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i---gG--~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV---GG--CTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe---cC--HHH
Confidence 678899999999999888888765542 3678888887533 22346666664 78999854 77653 23 377
Q ss_pred HHHHHHHHhCC
Q 018973 334 LIGEILRYQGV 344 (348)
Q Consensus 334 L~~~l~~~~~~ 344 (348)
|.+++.+..+.
T Consensus 74 l~~~~~~~~~~ 84 (86)
T TIGR02183 74 FEQLVKENFDI 84 (86)
T ss_pred HHHHHHhcccc
Confidence 88888877665
No 286
>PRK15000 peroxidase; Provisional
Probab=97.99 E-value=6.3e-05 Score=66.43 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=66.8
Q ss_pred CcEEEEEEeC-CCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHHh
Q 018973 253 QKLIVLDVGL-KHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLRD 305 (348)
Q Consensus 253 ~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~~ 305 (348)
+++++|+||. .||+.|....+.|.++.+++.+ ++.++.|.+|.... ..++++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 6899999998 5999999999999999999863 47788888774321 1135666
Q ss_pred CCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973 306 MNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRY 341 (348)
Q Consensus 306 ~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~ 341 (348)
|++. .+|+ |++.++|+++..+.|. +.+++.+.|+.+
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8876 6895 5555799999877653 577777777654
No 287
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.95 E-value=0.00022 Score=57.56 Aligned_cols=84 Identities=15% Similarity=0.237 Sum_probs=68.8
Q ss_pred eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCCe-E
Q 018973 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVPH-F 199 (348)
Q Consensus 122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt-~ 199 (348)
...++..+.++++.+..+++|++.|..+|-+.|.++...|.+++++.++ ..++.||.++ .+++.+.|.+. -|. +
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY-DPCTV 78 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS--SSEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC-CCeEE
Confidence 4567889999999888899999999999999999999999999999888 8999999999 45588999999 785 6
Q ss_pred EEeecccccc
Q 018973 200 SFYKSMEKIH 209 (348)
Q Consensus 200 ~~~~~g~~v~ 209 (348)
+||-+++.+.
T Consensus 79 mFF~rnkhm~ 88 (133)
T PF02966_consen 79 MFFFRNKHMM 88 (133)
T ss_dssp EEEETTEEEE
T ss_pred EEEecCeEEE
Confidence 6665555543
No 288
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.95 E-value=2.1e-05 Score=68.74 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHH
Q 018973 138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCE 189 (348)
Q Consensus 138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~ 189 (348)
+++++||.|| ++||++|....|.|.++.+++. ++.++.|..|..+.....++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~ 84 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHD 84 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHh
Confidence 6889999999 9999999999999999998874 58899999887443333333
No 289
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.94 E-value=5.2e-05 Score=53.18 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=44.5
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCCCccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
++.|+.++|++|++....|.+ . ++.|-.+|+++.++.+ ++.+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 578999999999998777643 2 4888889998875433 3444459999999887 77653
No 290
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.92 E-value=3.2e-05 Score=55.79 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=40.1
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEE
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSF 201 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~ 201 (348)
++.|+++||++|+++...|++ .++.+..+|++...+. .++.+..++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 578999999999999888776 3577778888764322 23444447899999976
No 291
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.91 E-value=0.00013 Score=66.22 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=66.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh------HHHHHHhCCCCccceEEEE-eC-CeEE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS------CMQFLRDMNVVEVPTFLFI-RD-GQIR 323 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~------~~~l~~~~~V~~~PTl~~~-~~-G~~v 323 (348)
.++.-+++||...|+.|.++.|.++.++++++=.+..+.+|..-.+. ....+++++|..+|++++. .+ |+..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 45688999999999999999999999999996445555555421111 1236789999999976655 44 4554
Q ss_pred EEEeCC-ChHHHHHHHHHHh
Q 018973 324 GRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 324 ~~~~G~-~~~~L~~~l~~~~ 342 (348)
---.|. +.++|.+.|....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEeeccCCHHHHHHHHHHHH
Confidence 455688 9999998887654
No 292
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.90 E-value=4.3e-05 Score=56.96 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=49.4
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
.++.-|+.|+.+||+.|++....|++ .++.|..+|+++.++..++.+..|...+|.+.+ +|+.+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~-----~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE-----KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH-----cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 34555788999999999999988875 357777888887655566777789999999854 66554
No 293
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.88 E-value=8.1e-05 Score=59.81 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHhc--CCCEEEEEEeCC----CCHHHHhhh--hHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 130 FDEALRLA--KNKLVVVEFAAS----RSLDSSKIY--PFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 130 f~~~l~~~--~~k~vvV~F~a~----wC~~C~~~~--p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
|++++..+ ..|+++|+++++ ||..|+... |.+.++-++ ++.+...|++..+ ..+++..++++.+|++.+
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~e-g~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPE-GYRVSQALRERTYPFLAM 82 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChH-HHHHHHHhCCCCCCEEEE
Confidence 44444433 489999999999 999998764 555555543 4888999988755 578999999999999888
Q ss_pred ee--c--ccccccccc
Q 018973 202 YK--S--MEKIHEEEG 213 (348)
Q Consensus 202 ~~--~--g~~v~~~~G 213 (348)
+- + .+.+.++.|
T Consensus 83 l~~~~~~~~vv~~i~G 98 (116)
T cd02991 83 IMLKDNRMTIVGRLEG 98 (116)
T ss_pred EEecCCceEEEEEEeC
Confidence 72 2 334566666
No 294
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.87 E-value=0.00014 Score=64.47 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=64.3
Q ss_pred EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhCCCC
Q 018973 255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDMNVV 309 (348)
Q Consensus 255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~~V~ 309 (348)
.+++.||++||+.|....+.|.++.+++++ ++.++.|+++.... ...+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999853 37888887764221 12467778875
Q ss_pred ----ccc-----eEEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973 310 ----EVP-----TFLFIRDGQIRGRYVG-----SGKGELIGEILRYQ 342 (348)
Q Consensus 310 ----~~P-----Tl~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~ 342 (348)
+.| +|++.++|+++..+.+ .+.+++.+.|+++.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 233 4666689999887754 36778888887653
No 295
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.86 E-value=7.9e-05 Score=55.10 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=45.0
Q ss_pred EEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 145 EFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 145 ~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
.+++++|+.|..+...+++++.+++ +.+-.+|..+ ..++ .+|||.++|++++ ||+.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~---~~~~-~~ygv~~vPalvI--ng~~~ 60 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIED---FEEI-EKYGVMSVPALVI--NGKVV 60 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTT---HHHH-HHTT-SSSSEEEE--TTEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccC---HHHH-HHcCCCCCCEEEE--CCEEE
Confidence 3467889999999999999999995 7777777755 4556 9999999999966 56543
No 296
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.84 E-value=0.00013 Score=54.34 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=47.4
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
++.-++.|+.+||++|++....|.+ + ++.|..+|+++.++..++.+..+...+|.+++ +|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----K--GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----c--CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 3445778999999999999777764 2 37777888887765556777778999999864 77654
No 297
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.83 E-value=5.2e-05 Score=65.79 Aligned_cols=109 Identities=18% Similarity=0.318 Sum_probs=88.4
Q ss_pred CCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC
Q 018973 227 GDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM 306 (348)
Q Consensus 227 ~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~ 306 (348)
+.....++++.+.++|-+.+... .+...++|.+|-+.-.-|..+...+.-|+.+|+ .++|+++-...-. ..++|
T Consensus 134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~g----as~~F 207 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNTG----ASDRF 207 (273)
T ss_pred CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecccc----chhhh
Confidence 44556789999999999888753 245678999999999999999999999999995 5999999876544 57789
Q ss_pred CCCccceEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 018973 307 NVVEVPTFLFIRDGQIRGRYVGS--------GKGELIGEILRY 341 (348)
Q Consensus 307 ~V~~~PTl~~~~~G~~v~~~~G~--------~~~~L~~~l~~~ 341 (348)
....+||+++|++|+.++.++.. ...+|..||+.+
T Consensus 208 ~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 208 SLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999999999766532 355677777664
No 298
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.82 E-value=0.00021 Score=53.53 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG 336 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~ 336 (348)
+..|..+||++|......|.+ ..+.|-.+|+++.++..+..+..+...+|++++ +|. ...|.+.++|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHH
Confidence 567889999999998777754 248888999998776555566678889999865 443 346889999998
Q ss_pred HHHHHh
Q 018973 337 EILRYQ 342 (348)
Q Consensus 337 ~l~~~~ 342 (348)
.+..+.
T Consensus 72 ~~~~~~ 77 (81)
T PRK10329 72 LHPAPH 77 (81)
T ss_pred HHHhhh
Confidence 887654
No 299
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.3e-05 Score=61.57 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=59.2
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHH---HHHHc-CCcEEEEEeCCCc-------------hhHHHHHHHcCcCCCCeEE
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVD---LSRQC-NDVEFILVMGDES-------------EKTKELCEREKIKKVPHFS 200 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~---la~~~-~~v~f~~vd~d~~-------------~~~~~l~~~~~V~~~Pt~~ 200 (348)
.++..++.|-++.|..|.++...+.. +.+-. +++.++.++.... ...++|++.|+|+++|||+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 48999999999999999999866532 22222 2266666665432 2346899999999999999
Q ss_pred Eee-ccccccccccCCCC
Q 018973 201 FYK-SMEKIHEEEGIGPD 217 (348)
Q Consensus 201 ~~~-~g~~v~~~~G~~~~ 217 (348)
||+ +|+.+.+.-|.-+.
T Consensus 121 Ffdk~Gk~Il~lPGY~pp 138 (182)
T COG2143 121 FFDKTGKTILELPGYMPP 138 (182)
T ss_pred EEcCCCCEEEecCCCCCH
Confidence 996 68999888886543
No 300
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.78 E-value=0.00015 Score=61.34 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhh-HH--HHHHHHcC-CcEEEEEeCCCchhHHHHHHHc--------Cc
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYP-FM--VDLSRQCN-DVEFILVMGDESEKTKELCERE--------KI 193 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p-~l--~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~--------~V 193 (348)
+.+.|+.+-+ .+|+++|+++.+||..|+.|.. .+ .++++... ++.-++||.++. +++...| |.
T Consensus 26 ~~ea~~~Ak~--e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~---Pdid~~y~~~~~~~~~~ 100 (163)
T PF03190_consen 26 GEEALEKAKK--ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER---PDIDKIYMNAVQAMSGS 100 (163)
T ss_dssp SHHHHHHHHH--HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----HHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHh--cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC---ccHHHHHHHHHHHhcCC
Confidence 4566766655 5999999999999999999874 22 22333332 378899999984 4566666 78
Q ss_pred CCCCeEEEee-ccccccc
Q 018973 194 KKVPHFSFYK-SMEKIHE 210 (348)
Q Consensus 194 ~~~Pt~~~~~-~g~~v~~ 210 (348)
-+.|+.+|.. +|+++..
T Consensus 101 gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 101 GGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp --SSEEEEE-TTS-EEEE
T ss_pred CCCCceEEECCCCCeeee
Confidence 8999987774 6776653
No 301
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.77 E-value=0.00013 Score=62.80 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=73.6
Q ss_pred CCCCCCceEecCHHHHH-HHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973 115 APRDERVKKVHSIEEFD-EALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI 193 (348)
Q Consensus 115 ~~~~~~v~~v~s~~~f~-~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V 193 (348)
...-+.|.+| |..+|. ++.+...+-.|||..|...-+-|+.+..+|+.|+.+|+.++|+++-...|-. .|-=
T Consensus 87 k~kfG~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIp------NYPe 159 (240)
T KOG3170|consen 87 KAKFGEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIP------NYPE 159 (240)
T ss_pred Hhcccceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccC------CCcc
Confidence 3455789999 455555 4444445889999999999999999999999999999999999998766421 3344
Q ss_pred CCCCeEEEeecccccccccc
Q 018973 194 KKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 194 ~~~Pt~~~~~~g~~v~~~~G 213 (348)
..+||+++|..|.....+.|
T Consensus 160 ~nlPTl~VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 160 SNLPTLLVYHHGALKKQMIG 179 (240)
T ss_pred cCCCeEEEeecchHHhheeh
Confidence 78999999999988877766
No 302
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.76 E-value=8.8e-05 Score=56.27 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=49.3
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCc--CCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKI--KKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V--~~~Pt~~~~~~g~~v 208 (348)
|+.|..+||+.|+++...|+++..+++++.+..+|++... ...++.+.+|- +.+|++.+ +|+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe
Confidence 6789999999999999999999888878888888887432 23346666663 89999854 55443
No 303
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.76 E-value=0.00017 Score=52.55 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=51.1
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG 336 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~ 336 (348)
..|..++|+.|++....|.+ .++.|-.+|+++++...+..++.|...+|++++ +|+ ....|.+++.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence 56788999999999777764 247788889988876555666678889999865 453 2456778777765
No 304
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.76 E-value=0.00014 Score=66.28 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc--h------hHHHHHHHcCcCCCCeEE
Q 018973 129 EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES--E------KTKELCEREKIKKVPHFS 200 (348)
Q Consensus 129 ~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~--~------~~~~l~~~~~V~~~Pt~~ 200 (348)
+-++.+++..++.-++.||.+.|+.|.++.|.+..++++|+ +.++.|++|.. + ....+++++||+.+|+++
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~ 218 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY 218 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence 34445666667899999999999999999999999999996 55555555542 1 124588999999999977
Q ss_pred Eeec
Q 018973 201 FYKS 204 (348)
Q Consensus 201 ~~~~ 204 (348)
+...
T Consensus 219 Lv~~ 222 (256)
T TIGR02739 219 LVNP 222 (256)
T ss_pred EEEC
Confidence 7653
No 305
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.76 E-value=0.0001 Score=64.06 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=81.3
Q ss_pred CCCCCCceEecCHHHHHHHHHhc-CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCc
Q 018973 115 APRDERVKKVHSIEEFDEALRLA-KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKI 193 (348)
Q Consensus 115 ~~~~~~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V 193 (348)
.+.-+.|.++.+.++|-+.+... +...++|+.|-+.-.-|.++...+.=||.+||-++|.++-...- ....+|..
T Consensus 134 gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~----gas~~F~~ 209 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT----GASDRFSL 209 (273)
T ss_pred CCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc----cchhhhcc
Confidence 34456899999999999998865 46788999999999999999999999999999999999985542 35678999
Q ss_pred CCCCeEEEeecccccccccc
Q 018973 194 KKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 194 ~~~Pt~~~~~~g~~v~~~~G 213 (348)
.++||++||++|+.+..|+.
T Consensus 210 n~lP~LliYkgGeLIgNFv~ 229 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFVS 229 (273)
T ss_pred cCCceEEEeeCCchhHHHHH
Confidence 99999999999998876543
No 306
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.76 E-value=8.2e-05 Score=64.98 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=54.8
Q ss_pred CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHc-CcCCCCeEEEeecccccccccc
Q 018973 138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCERE-KIKKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~-~V~~~Pt~~~~~~g~~v~~~~G 213 (348)
++++||+.|| +.||++|....+.|.++.+++. ++.++.|..|........++.. .+..+|.-++...+..+.+..|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6789999999 9999999999999999999985 5899999999866555566543 2234544334443444444444
No 307
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.74 E-value=0.00022 Score=63.69 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=64.4
Q ss_pred CcEEE-EEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH------------------------HHHHHhC
Q 018973 253 QKLIV-LDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC------------------------MQFLRDM 306 (348)
Q Consensus 253 ~k~vv-V~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~------------------------~~l~~~~ 306 (348)
+++++ +.|+++||+.|....+.|.+++.++.+ ++.++.+++|..... .++++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 45555 588999999999999999999999853 477888887744321 2456667
Q ss_pred CCC-------ccce-EEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 018973 307 NVV-------EVPT-FLFIRDGQIRGRYVG-----SGKGELIGEILRYQ 342 (348)
Q Consensus 307 ~V~-------~~PT-l~~~~~G~~v~~~~G-----~~~~~L~~~l~~~~ 342 (348)
|+. .+|+ |++..+|++...+.+ .+.+++.+.|+.+.
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 763 3674 566679998887543 36788888887653
No 308
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.74 E-value=7.2e-06 Score=72.20 Aligned_cols=96 Identities=20% Similarity=0.373 Sum_probs=80.1
Q ss_pred cCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 236 LHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 236 ~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
..+.+++...+. .-+++.|+++||+.|....+.|++++.--.+ .+++++||+..++. |.-+|=+..+||+
T Consensus 28 ~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg---LsGRF~vtaLptI 98 (248)
T KOG0913|consen 28 RIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG---LSGRFLVTALPTI 98 (248)
T ss_pred Eecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc---cceeeEEEecceE
Confidence 346677877765 4578999999999999999999988755322 38999999999998 8889999999999
Q ss_pred EEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 315 LFIRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 315 ~~~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
.-.++|.. -+|.|+ ++++++.++...
T Consensus 99 YHvkDGeF-rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 99 YHVKDGEF-RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEeecccc-ccccCcccchhHHHHHHhh
Confidence 99999975 578898 999999988743
No 309
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.73 E-value=0.00011 Score=54.67 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=45.3
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-h-HHHHHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-K-TKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~-~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|+++||+.|+.+.+.|+++..+ ..++.++.++.. + ...+.+..|+..+|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5789999999999999999997663 477788876542 1 1245667799999997 4466554
No 310
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.72 E-value=0.00028 Score=63.75 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEE--ECC----------------C------------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM--NGD----------------E------------------ 295 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v--d~~----------------~------------------ 295 (348)
+++.+++.|..+.|++|+++.+.+.++.+. .+.+..+ ... +
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 567889999999999999999888876542 2443332 210 0
Q ss_pred ---c--hhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 018973 296 ---N--DSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 296 ---~--~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
. ++..++++++||+++||++ +.||+.+ .|. +.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 0 0123477789999999999 6788765 788 899999998864
No 311
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.70 E-value=0.00036 Score=63.93 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=65.3
Q ss_pred CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHHh
Q 018973 253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLRD 305 (348)
Q Consensus 253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~~ 305 (348)
+++++++|| +.||+.|....+.|.++.+++.+ ++.++.|.+|.... ..++++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 567777777 89999999999999999999853 37777777765210 1247777
Q ss_pred CCCC-----ccce-EEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973 306 MNVV-----EVPT-FLFIRDGQIRGRYV-----GSGKGELIGEILRYQ 342 (348)
Q Consensus 306 ~~V~-----~~PT-l~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~ 342 (348)
||+. ..|+ |++.++|+++.... |.+.+++.+.|+.+.
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 8885 4785 55557999988663 237888888877653
No 312
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.69 E-value=0.00014 Score=52.00 Aligned_cols=60 Identities=25% Similarity=0.205 Sum_probs=45.4
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeecccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKIH 209 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v~ 209 (348)
++.|+++||++|+.+.+.|.+.. +.|..+|+++.++ ..++.+..+...+|++.+ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 57889999999999999988753 7778888887553 345566678889998743 665554
No 313
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.69 E-value=0.00025 Score=62.53 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh-------------------------HHHHHH
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS-------------------------CMQFLR 304 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~-------------------------~~~l~~ 304 (348)
.++.++|+|| +.||+.|....+.|.++.+++.+ ++.++.|+.+.... ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 3678999999 48899999988999999998853 47788887763221 235777
Q ss_pred hCCCC------ccce-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 018973 305 DMNVV------EVPT-FLFIRDGQIRGRYVGS-----GKGELIGEILRY 341 (348)
Q Consensus 305 ~~~V~------~~PT-l~~~~~G~~v~~~~G~-----~~~~L~~~l~~~ 341 (348)
.||+. .+|+ +++.++|+++....+. +.+++.+.|+..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 88885 3574 5666799988877653 455566665544
No 314
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.63 E-value=0.00051 Score=61.36 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=64.2
Q ss_pred CcE-EEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhH------------------------HHHHHhC
Q 018973 253 QKL-IVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSC------------------------MQFLRDM 306 (348)
Q Consensus 253 ~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~------------------------~~l~~~~ 306 (348)
+++ +++.|+++||+.|....+.|.++..++.+ ++.++.+++|..... .++++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 455 56799999999999999999999999853 478888887753211 1356667
Q ss_pred CCC-------ccce-EEEEeCCeEEEEEe-----CCChHHHHHHHHHH
Q 018973 307 NVV-------EVPT-FLFIRDGQIRGRYV-----GSGKGELIGEILRY 341 (348)
Q Consensus 307 ~V~-------~~PT-l~~~~~G~~v~~~~-----G~~~~~L~~~l~~~ 341 (348)
|+. .+|+ |++.++|+++..+. |.+.+++.+.|+.+
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 873 5795 55557999887654 22677777777654
No 315
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.63 E-value=0.00054 Score=49.81 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=48.7
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG 336 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~ 336 (348)
++.|..+||+.|.+....|.+ + ++.|..+|+++.+....+.+..+...+|.++ .+|+.++ | .++|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~ig---g--~~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELIG---G--SDDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEEe---C--HHHHHH
Confidence 577899999999998776664 2 3677788888766545565667889999974 4776542 3 355555
Q ss_pred HH
Q 018973 337 EI 338 (348)
Q Consensus 337 ~l 338 (348)
+|
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 54
No 316
>PRK13189 peroxiredoxin; Provisional
Probab=97.62 E-value=0.00054 Score=61.50 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=63.7
Q ss_pred Cc-EEEEEEeCCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchh------------------------HHHHHHhC
Q 018973 253 QK-LIVLDVGLKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDS------------------------CMQFLRDM 306 (348)
Q Consensus 253 ~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~------------------------~~~l~~~~ 306 (348)
++ .+++.||++||+.|....+.|.++.+++.+ ++.++.|.+|.... ..++++.|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 45 455678899999999999999999988853 37777777764321 12366677
Q ss_pred CCC-------ccce-EEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973 307 NVV-------EVPT-FLFIRDGQIRGRYV-----GSGKGELIGEILRYQ 342 (348)
Q Consensus 307 ~V~-------~~PT-l~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~ 342 (348)
|+. .+|+ |++..+|+++.... |.+.+++.+.|+.+.
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 865 4674 55557999887654 336778888887653
No 317
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.60 E-value=0.0015 Score=53.63 Aligned_cols=108 Identities=12% Similarity=0.184 Sum_probs=77.3
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCC--CChh-h-hhhhhHHHHHHHHhCCc-EEEEEEECCCchhHHHHHHhC
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLK--HCGP-C-VKVYPTVIKLSRQMAGT-VVFARMNGDENDSCMQFLRDM 306 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~--wC~~-C-~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~~~l~~~~ 306 (348)
.++++.+.+.+++.=. .++.-+|-|.-. .|.. + ......|.++++.++++ +.|+.+|.++... +.+.|
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~---~~~~f 75 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD---LEEAL 75 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH---HHHHc
Confidence 4566767666665443 234555555421 1222 3 45567899999999999 9999999999887 99999
Q ss_pred CCC--ccceEEEEeCCeEEEE-EeCC-ChHHHHHHHHHHhCCCC
Q 018973 307 NVV--EVPTFLFIRDGQIRGR-YVGS-GKGELIGEILRYQGVRV 346 (348)
Q Consensus 307 ~V~--~~PTl~~~~~G~~v~~-~~G~-~~~~L~~~l~~~~~~~~ 346 (348)
|+. ++|+++++...+.... +.|. +.+.+.+|+++++.-++
T Consensus 76 gl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 76 NIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 995 4999988865332333 5577 99999999999976554
No 318
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.60 E-value=0.00034 Score=52.43 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=50.5
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCCCccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLM 220 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~ 220 (348)
+..|..+||++|++....|++ .++.|-.+|+++.++..+..+..|...+|++++ +++ .+.|.+++.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHH
Confidence 568899999999999988865 578899999988665555556678899999965 332 34455555544
No 319
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.59 E-value=8.5e-06 Score=71.78 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=71.9
Q ss_pred CceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 120 RVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 120 ~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
.++.+ +.+++.++++ .-++++|+|+||+.|+...|+|+.++.--.| +.+.+||+..+ +-|.-+|=|..+|
T Consensus 25 ~~~~~-~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n---pgLsGRF~vtaLp 96 (248)
T KOG0913|consen 25 KLTRI-DEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN---PGLSGRFLVTALP 96 (248)
T ss_pred eeEEe-cccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec---cccceeeEEEecc
Confidence 45555 8999999986 3489999999999999999999999886555 89999999984 4588999999999
Q ss_pred eEEEeeccccccccccCC
Q 018973 198 HFSFYKSMEKIHEEEGIG 215 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G~~ 215 (348)
||.-.++|+- .++.|+.
T Consensus 97 tIYHvkDGeF-rrysgaR 113 (248)
T KOG0913|consen 97 TIYHVKDGEF-RRYSGAR 113 (248)
T ss_pred eEEEeecccc-ccccCcc
Confidence 9988888754 4566643
No 320
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.58 E-value=0.0011 Score=61.84 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=72.4
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhh-----hhhHHHHHHHHh--CCcEEEEEEECCCchhHHHHHH
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVK-----VYPTVIKLSRQM--AGTVVFARMNGDENDSCMQFLR 304 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~-----~~p~l~~la~~~--~~~v~~~~vd~~~~~~~~~l~~ 304 (348)
++..+ +..+|.+.++.. +.++|+|+.+--..-.. +...+-+|+.+. ...+.|+.||..+... +++
T Consensus 35 RVi~L-neKNfk~~lKky----d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k---lAK 106 (383)
T PF01216_consen 35 RVIDL-NEKNFKRALKKY----DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK---LAK 106 (383)
T ss_dssp -CEEE--TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH---HHH
T ss_pred ceEEc-chhHHHHHHHhh----cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH---HHH
Confidence 34444 568899998864 78888999876433222 123344455444 2349999999999887 999
Q ss_pred hCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973 305 DMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV 344 (348)
Q Consensus 305 ~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~ 344 (348)
++|+...+++.+|++|+++.. .|. +++.|++||...+.-
T Consensus 107 KLgv~E~~SiyVfkd~~~IEy-dG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 107 KLGVEEEGSIYVFKDGEVIEY-DGERSADTLVEFLLDLLED 146 (383)
T ss_dssp HHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred hcCccccCcEEEEECCcEEEe-cCccCHHHHHHHHHHhccc
Confidence 999999999999999998865 488 999999999988653
No 321
>PHA03050 glutaredoxin; Provisional
Probab=97.57 E-value=0.00032 Score=55.57 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=44.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC-c-hhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE-S-EKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~-~-~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|..+|||.|++....|+++.-+++.+..+.||-.. . +...++.+..|.+.+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 77899999999999999998875555445555555311 1 22345666678899999854 56544
No 322
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.54 E-value=0.00028 Score=55.53 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=61.3
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhh---HHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYP---TVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p---~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~ 315 (348)
.++++.++.. ....+ .|++..|..+.+... .+-++.+.+++.+..+.+...... ++.++||+..+|+++
T Consensus 16 ~~~ld~~l~~----~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~---~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 16 ADTLDAFLAA----PGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER---ALAARFGVRRWPALV 87 (107)
T ss_dssp CCCHHHHHHC----CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH---HHHHHHT-TSSSEEE
T ss_pred hhhHHHHHhC----CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH---HHHHHhCCccCCeEE
Confidence 4567777774 34444 455555555555443 778888889888877777733333 499999999999999
Q ss_pred EEeCCeEEEEEeCC-ChH
Q 018973 316 FIRDGQIRGRYVGS-GKG 332 (348)
Q Consensus 316 ~~~~G~~v~~~~G~-~~~ 332 (348)
++++|+.++.+.|. +-.
T Consensus 88 f~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEETTEEEEEEESSSTHH
T ss_pred EEECCEEEEEecCeeccc
Confidence 99999999999987 543
No 323
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.52 E-value=0.00061 Score=50.59 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=43.2
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hH-HHHHHhCCCCccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SC-MQFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~-~~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
++.|+++||++|..+...|.++.. .+.++.++.+... +. ..+.+..++.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 577899999999999888877643 3567777776542 22 235566788899997 4477654
No 324
>PRK15000 peroxidase; Provisional
Probab=97.51 E-value=0.00026 Score=62.48 Aligned_cols=76 Identities=14% Similarity=0.023 Sum_probs=53.1
Q ss_pred CCCEEEEEEeCC-CCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH----HHcCcCCCCeEEEeeccccccc
Q 018973 138 KNKLVVVEFAAS-RSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC----EREKIKKVPHFSFYKSMEKIHE 210 (348)
Q Consensus 138 ~~k~vvV~F~a~-wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~----~~~~V~~~Pt~~~~~~g~~v~~ 210 (348)
+++.|||.||+. ||++|....+.|.++++++. ++.++.|.+|......... ++.|+..+|.-++......+.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 99999999999999999985 5899999999744333333 3356654554444444434433
Q ss_pred ccc
Q 018973 211 EEG 213 (348)
Q Consensus 211 ~~G 213 (348)
..|
T Consensus 113 ~yg 115 (200)
T PRK15000 113 AYG 115 (200)
T ss_pred HcC
Confidence 334
No 325
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.50 E-value=0.00032 Score=62.11 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch
Q 018973 141 LVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE 182 (348)
Q Consensus 141 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~ 182 (348)
.||+.|+++||+.|....+.|.++++++. ++.++.|.+|...
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 45668999999999999999999999885 5899999988743
No 326
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.48 E-value=0.0007 Score=59.52 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC--CC----------------------------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG--DE---------------------------------- 295 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~--~~---------------------------------- 295 (348)
+.+..++.|..+.|++|+++.+.+.+ ..+++.+..+.. ..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 46789999999999999999888776 122333332221 10
Q ss_pred ------chhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973 296 ------NDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 296 ------~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l 338 (348)
-+...++++++||.++||++ +.+|+. +.|. +.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 00122467779999999997 788876 4688 777777653
No 327
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.48 E-value=0.00058 Score=48.76 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=44.1
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhH-HHHHHhCCCCccceEEEEeCCeEEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSC-MQFLRDMNVVEVPTFLFIRDGQIRG 324 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~-~~l~~~~~V~~~PTl~~~~~G~~v~ 324 (348)
++.|+++||++|+.+...|.+.. +.|..+|++++++. .++.+..+...+|++++ +|+.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56789999999999987777642 67778888877642 34555678888897754 776654
No 328
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.47 E-value=0.0005 Score=50.10 Aligned_cols=69 Identities=13% Similarity=0.246 Sum_probs=49.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccccccCCCCccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIGPDQLM 220 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~~~~l~ 220 (348)
+..|..++|+.|++....|++ .++.|-.+|+++.++..+...+.|...+|++++ +|+ ..+.|.+++.+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHH
Confidence 357888999999999988876 467888888887665555555669999999865 343 245566555543
No 329
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.45 E-value=0.00043 Score=70.61 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=55.8
Q ss_pred CCEE-EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 139 NKLV-VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 139 ~k~v-vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
++++ +-.|.+++|+.|......+.+++.+.+++..-.+|..+ .++++++|+|.++|++++ ||+.+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~---~~~~~~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH---FPDLKDEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc---cHHHHHhCCceecCEEEE--CCEEE
Confidence 3455 55668999999999999999999999999999999998 566999999999999987 55544
No 330
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.44 E-value=0.00048 Score=69.71 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
.++..+.+++-.+..-+-.|+++.|++|......+.+++.+.+++.+-.||..+ .++++++|+|.++|++++ ||+
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~---~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL---FQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh---CHhHHHhcCCcccCEEEE--CCc
Confidence 344455555434555688999999999999999999999999999999999888 566999999999999966 554
Q ss_pred cc
Q 018973 207 KI 208 (348)
Q Consensus 207 ~v 208 (348)
.+
T Consensus 179 ~~ 180 (517)
T PRK15317 179 EF 180 (517)
T ss_pred EE
Confidence 33
No 331
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.44 E-value=0.00085 Score=51.57 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=68.4
Q ss_pred ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE
Q 018973 235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF 314 (348)
Q Consensus 235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl 314 (348)
.+.+.+++++++.. +++++|-|+..++.+ ....+.+++..+++.+.|+.+. +.+ +++++++. .|++
T Consensus 3 ~i~s~~~l~~~~~~----~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~~~~F~~~~---~~~---~~~~~~~~-~~~i 68 (97)
T cd02981 3 ELTSKEELEKFLDK----DDVVVVGFFKDEESE---EYKTFEKVAESLRDDYGFGHTS---DKE---VAKKLKVK-PGSV 68 (97)
T ss_pred ecCCHHHHHHHhcc----CCeEEEEEECCCCcH---HHHHHHHHHHhcccCCeEEEEC---hHH---HHHHcCCC-CCce
Confidence 45677778877663 688888889888874 4556889999987778888776 233 78888765 4899
Q ss_pred EEEeCC-eEEEEEeCC-ChHHHHHHHHH
Q 018973 315 LFIRDG-QIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 315 ~~~~~G-~~v~~~~G~-~~~~L~~~l~~ 340 (348)
++|+.+ +....+.|. +.++|.+||..
T Consensus 69 ~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 69 VLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred EEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 999764 444557787 88899999864
No 332
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.44 E-value=0.00039 Score=61.31 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=38.8
Q ss_pred CCCEEEEEEeC-CCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCch
Q 018973 138 KNKLVVVEFAA-SRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESE 182 (348)
Q Consensus 138 ~~k~vvV~F~a-~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~ 182 (348)
+++.++|.||+ .||+.|....+.|.++++++. ++.++.|+.|...
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 57899999995 789999999999999999986 5899999988643
No 333
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.44 E-value=0.00055 Score=49.80 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=44.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
++.|..+||+.|.+....|++ .++.|..+|+++.+....+.+..|...+|.+. .+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-----~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-----NGISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-----cCCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE
Confidence 678899999999999888875 35777888887765445566667999999974 356544
No 334
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.40 E-value=0.00034 Score=54.53 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=39.7
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH----HHHhCCCCccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ----FLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~----l~~~~~V~~~PTl~~~~~G~~v 323 (348)
++.|..+||++|.++...|.+. ++.|..+|+++.++..+ +.+..|...+|.++ -+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence 5678999999999987766553 25556677766554333 33334678899874 477655
No 335
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.37 E-value=0.00071 Score=61.42 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCch------hHHHHHHHcCcCCCCeEEEe
Q 018973 130 FDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESE------KTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 130 f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~------~~~~l~~~~~V~~~Pt~~~~ 202 (348)
-++.+++..++.-++.||.+.|+.|..+.|.++.++++|+= +..+.+|+.-.+ .....++++||+.+|++++.
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 33446655678999999999999999999999999999962 555555542211 01345689999999998777
Q ss_pred ec
Q 018973 203 KS 204 (348)
Q Consensus 203 ~~ 204 (348)
..
T Consensus 214 ~~ 215 (248)
T PRK13703 214 DP 215 (248)
T ss_pred EC
Confidence 53
No 336
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.35 E-value=0.00055 Score=53.35 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=40.5
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHH----HHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKE----LCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~----l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|..+||+.|++....|+++ ++.|-.+|+|+.++..+ +.+..|.+.+|.+. -+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence 6678999999999999888775 34455666665443333 34445788999973 466544
No 337
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.31 E-value=0.00061 Score=60.28 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=42.4
Q ss_pred CCCEEEE-EEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH----HHcCc
Q 018973 138 KNKLVVV-EFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC----EREKI 193 (348)
Q Consensus 138 ~~k~vvV-~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~----~~~~V 193 (348)
+++.++| .|+++||+.|....+.|.++.+++. ++.++.|.+|......+.+ +++|+
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~ 88 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGI 88 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCC
Confidence 4665555 6899999999999999999999885 5899999998754333333 34565
No 338
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.28 E-value=0.0015 Score=47.60 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=43.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcC-CCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIK-KVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~-~~Pt~~~~~~g~~v 208 (348)
++.|..+||+.|++....|++ .++.|..+|+++.++ ..++.+.+|.. .+|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-----KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 568899999999999988876 357777888877532 34455667877 8998753 56544
No 339
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.24 E-value=0.0023 Score=58.57 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=58.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC----------------C--------------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD----------------E-------------------- 295 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~----------------~-------------------- 295 (348)
+.+.+++.|..+.|++|+++.+.+.++.+. +++.+..+... +
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 467889999999999999998887766544 33444433210 0
Q ss_pred ----chh-------HHHHHHhCCCCccceEEEEe-CCeEEEEEeCC-ChHHHHHHHH
Q 018973 296 ----NDS-------CMQFLRDMNVVEVPTFLFIR-DGQIRGRYVGS-GKGELIGEIL 339 (348)
Q Consensus 296 ----~~~-------~~~l~~~~~V~~~PTl~~~~-~G~~v~~~~G~-~~~~L~~~l~ 339 (348)
.++ ..++++++||+++||+++-. +|+ +..+.|. +.++|.+.|.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhC
Confidence 001 12366779999999998875 463 4566798 8888887764
No 340
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.24 E-value=0.00072 Score=53.20 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=59.7
Q ss_pred eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHH---hhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcCCCC
Q 018973 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSS---KIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIKKVP 197 (348)
Q Consensus 122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~---~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~~~P 197 (348)
..+ +.+++++.+. .....+ .|++..|..+. -+.-.+-+|.+.+++ +....++-+. ..+|..+||+...|
T Consensus 12 ~~v-d~~~ld~~l~--~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 12 PRV-DADTLDAFLA--APGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRWP 84 (107)
T ss_dssp EEE--CCCHHHHHH--CCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSSS
T ss_pred eee-chhhHHHHHh--CCCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccCC
Confidence 344 5677788887 344444 55555555444 444588888889988 5666666333 56899999999999
Q ss_pred eEEEeeccccccccccC
Q 018973 198 HFSFYKSMEKIHEEEGI 214 (348)
Q Consensus 198 t~~~~~~g~~v~~~~G~ 214 (348)
+++|+++|+.+....|.
T Consensus 85 aLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp EEEEEETTEEEEEEESS
T ss_pred eEEEEECCEEEEEecCe
Confidence 99999999998877764
No 341
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.22 E-value=0.0047 Score=47.91 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=45.8
Q ss_pred hhHHHHhhhcccCCcEEEEEEe----CCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCCCccceE
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVG----LKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNVVEVPTF 314 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V~~~PTl 314 (348)
+.+++++. ..+|+|+-. .+||++|.+....|.+. ++.|..+|++++++.+ ++.+..|...+|.+
T Consensus 3 ~~v~~~i~-----~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v 71 (97)
T TIGR00365 3 ERIKEQIK-----ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL 71 (97)
T ss_pred HHHHHHhc-----cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 33455554 345555543 28999999987777653 3667788887766544 34445677788887
Q ss_pred EEEeCCeEE
Q 018973 315 LFIRDGQIR 323 (348)
Q Consensus 315 ~~~~~G~~v 323 (348)
.+ +|+.+
T Consensus 72 fi--~g~~i 78 (97)
T TIGR00365 72 YV--KGEFV 78 (97)
T ss_pred EE--CCEEE
Confidence 54 77654
No 342
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.22 E-value=0.0022 Score=46.75 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=42.5
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCC-ccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVV-EVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~-~~PTl~~~~~G~~v 323 (348)
++.|+.++|++|......|.+. ++.|-.+|++++++ .+++.+..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5678899999999987777652 36777788887654 23455666776 8998754 77654
No 343
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.20 E-value=0.0036 Score=51.93 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v 291 (348)
+.+..++.|+.++|++|+.+.+.+.++..+++ ++.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence 46789999999999999999999999887774 4444443
No 344
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.20 E-value=0.0033 Score=50.07 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=69.7
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH---hCCcEEEEEEECCCchhHHHHHHhCCCCc--cce
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ---MAGTVVFARMNGDENDSCMQFLRDMNVVE--VPT 313 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~---~~~~v~~~~vd~~~~~~~~~l~~~~~V~~--~PT 313 (348)
.+..+.+... +.+..+.|+.+ ..-......+.+++++ +++++.|+.+|.++... .++.||+.. +|.
T Consensus 6 ~e~~~~~~~~----~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~---~~~~fgl~~~~~P~ 76 (111)
T cd03072 6 FENAEELTEE----GLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH---PLLHLGKTPADLPV 76 (111)
T ss_pred cccHHHHhcC----CCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh---HHHHcCCCHhHCCE
Confidence 3445555543 34444455532 3346778889999999 99999999999999887 899999987 899
Q ss_pred EEEEeCCe-EEEE-EeCC-ChHHHHHHHHHHhC
Q 018973 314 FLFIRDGQ-IRGR-YVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 314 l~~~~~G~-~v~~-~~G~-~~~~L~~~l~~~~~ 343 (348)
+.+..... .... ..+. +.+.|.+|+++++.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 98885432 2222 4455 88999999998864
No 345
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.18 E-value=0.0024 Score=47.18 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.0
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
++.|+.+||++|.+....|.+. ++.|-.+|++..++ .+++.+..+...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3578899999999998777653 35667777776653 234555568889999754 77644
No 346
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.003 Score=47.14 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.6
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch--hHHHHHHhC-CCCccceEEEEeCCeEEEEEeCC-ChH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND--SCMQFLRDM-NVVEVPTFLFIRDGQIRGRYVGS-GKG 332 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--~~~~l~~~~-~V~~~PTl~~~~~G~~v~~~~G~-~~~ 332 (348)
++.|..++||+|.+....|.+ ..+.|..++++..+ +.++..++. |.+++|++++ +|+.+ .|. +..
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i---gg~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV---GGCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE---eCcccHH
Confidence 567889999999998776663 23677777777665 555566666 7899999876 66533 343 555
Q ss_pred HHHH
Q 018973 333 ELIG 336 (348)
Q Consensus 333 ~L~~ 336 (348)
++..
T Consensus 72 ~~~~ 75 (80)
T COG0695 72 ALEA 75 (80)
T ss_pred HHHh
Confidence 5543
No 347
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.16 E-value=0.0026 Score=46.31 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=43.7
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRG 324 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~ 324 (348)
++.|+.++|+.|++....|.+ . .+.|..+|+++.++ ..++.+..+-..+|++++ +|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----~--gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----K--GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 567889999999998776665 2 37788888887664 234556667788999855 776554
No 348
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.15 E-value=0.0012 Score=60.48 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=41.0
Q ss_pred CCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973 138 KNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC 188 (348)
Q Consensus 138 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~ 188 (348)
+++.+|+.|| ++||++|....+.|.++.+++. ++.++.|.+|....+.+.+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~ 150 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWK 150 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 5677888877 8999999999999999999984 5899999998743334443
No 349
>PHA03050 glutaredoxin; Provisional
Probab=97.13 E-value=0.0016 Score=51.58 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=41.7
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc---hh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN---DS-CMQFLRDMNVVEVPTFLFIRDGQIRG 324 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~-~~~l~~~~~V~~~PTl~~~~~G~~v~ 324 (348)
++.|..+|||+|.+....|.+..-+.+ .|..+|+++. .+ ..++.+.-|...+|++++ +|+.++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 677999999999998777766532221 3556666642 22 223555568889999855 777653
No 350
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.12 E-value=0.0095 Score=50.00 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=63.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHh--CCcEEEEEEECCCchhH------------------------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQM--AGTVVFARMNGDENDSC------------------------------ 299 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~------------------------------ 299 (348)
+.+.+|+.|+...|++|..+.+.+.++.+++ .+++.|+..+.......
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999999998 67899888876321110
Q ss_pred -----------------------------------HHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973 300 -----------------------------------MQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 300 -----------------------------------~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~ 340 (348)
.+.+++.+|.++||+++ ||+.+ .|. +.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 00222368999999998 99874 666 99999998875
No 351
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.09 E-value=0.0019 Score=65.26 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccc
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEK 207 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~ 207 (348)
++..+.+++-.+..-+-.|+.+.|++|......+.+++.+.+++..-.+|..+ .++++++|+|.++|++++ ||+.
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~---~~~~~~~~~v~~VP~~~i--~~~~ 180 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL---FQDEVEALGIQGVPAVFL--NGEE 180 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh---CHHHHHhcCCcccCEEEE--CCcE
Confidence 44444455434556688999999999999999999999999999988899888 566999999999999976 5543
No 352
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.08 E-value=0.0013 Score=58.66 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=41.5
Q ss_pred CCCE-EEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973 138 KNKL-VVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC 188 (348)
Q Consensus 138 ~~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~ 188 (348)
+++. ||+.|+++||++|....+.|.++.+++. ++.++.|.+|....+...+
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 4565 5689999999999999999999999984 6999999999854443343
No 353
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0022 Score=47.89 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=41.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHc-CcCCCCeEEE
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCERE-KIKKVPHFSF 201 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~-~V~~~Pt~~~ 201 (348)
++.|..++|+.|++....|++ .++.|..+|+++.+ +..+..++. |.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 677889999999999988884 45777777766654 444566666 8999999877
No 354
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.07 E-value=0.002 Score=47.66 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=42.6
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|+.+||+.|++....|++. ++.|-.+|++..+ ...++.+..|...+|++.+ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4678899999999999999863 4666667776644 2345566678899999744 55543
No 355
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.03 E-value=0.0035 Score=45.67 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=44.3
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|+.+||+.|++....|++ .++.|-.+|+++.+. ..++.+..+-..+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 567889999999999988887 457778888876442 345666678889999854 55544
No 356
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.02 E-value=0.006 Score=46.55 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=41.8
Q ss_pred CcEEEEEEeC----CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHH-HHHhCCCCccceEEEEeCCeEE
Q 018973 253 QKLIVLDVGL----KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQ-FLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 253 ~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~-l~~~~~V~~~PTl~~~~~G~~v 323 (348)
+.+|+|+-.. +||++|.+....|.+. ++.|..+|+++.++.++ +.+..|...+|+++ .+|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence 3455554432 7999999987666653 36677778777665433 44445788899874 477654
No 357
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.98 E-value=0.0018 Score=48.44 Aligned_cols=77 Identities=8% Similarity=0.094 Sum_probs=57.2
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCC--eEEEEEeCC-ChHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDG--QIRGRYVGS-GKGE 333 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G--~~v~~~~G~-~~~~ 333 (348)
++.|+.+.|.-|..+...|.++.... .+.+-.+|+++++. +.++|+. .+|.+.+-..+ .......+. +.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~---l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE---LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH---HHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH---HHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 67899999999999988888876554 38899999998887 9999995 69997764310 112334566 9999
Q ss_pred HHHHHH
Q 018973 334 LIGEIL 339 (348)
Q Consensus 334 L~~~l~ 339 (348)
|.++|+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998875
No 358
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.97 E-value=0.002 Score=57.60 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=40.1
Q ss_pred CCCEEE-EEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHH
Q 018973 138 KNKLVV-VEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKEL 187 (348)
Q Consensus 138 ~~k~vv-V~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l 187 (348)
+++.+| +.|+++||+.|....+.|.++++++. ++.++.|.+|....+.+.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW 84 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 456555 58899999999999999999999984 699999999975443333
No 359
>PRK10638 glutaredoxin 3; Provisional
Probab=96.95 E-value=0.0038 Score=46.78 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=44.4
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEEeecccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSFYKSMEKIH 209 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~g~~v~ 209 (348)
++.|..+||+.|++....|++. ++.+..+|+++.+ ...++.+..|...+|++.+ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678889999999999888863 5667778887654 3346667778899998744 565443
No 360
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.94 E-value=0.0075 Score=51.75 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=67.3
Q ss_pred CCCceEecCHHHHHHHHHhcCCCE-EEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC-
Q 018973 118 DERVKKVHSIEEFDEALRLAKNKL-VVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK- 194 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~~~k~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~- 194 (348)
-+.+.++ |.+++..+.. .+++ +++.|..........+...+.++++++.+ +.|+.+|++. .+++++.+|+.
T Consensus 76 ~P~v~~~-t~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~ 149 (184)
T PF13848_consen 76 FPLVPEL-TPENFEKLFS--SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDE 149 (184)
T ss_dssp STSCEEE-STTHHHHHHS--TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTT
T ss_pred ccccccc-chhhHHHHhc--CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCC
Confidence 3456666 7888988886 4555 88888777788889999999999999988 9999999997 55699999998
Q ss_pred -CCCeEEEee
Q 018973 195 -KVPHFSFYK 203 (348)
Q Consensus 195 -~~Pt~~~~~ 203 (348)
.+|+++++.
T Consensus 150 ~~~P~~vi~~ 159 (184)
T PF13848_consen 150 DDLPALVIFD 159 (184)
T ss_dssp SSSSEEEEEE
T ss_pred ccCCEEEEEE
Confidence 999999987
No 361
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.94 E-value=0.0031 Score=57.03 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=49.5
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEE--eCCC-----------------------------------
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILV--MGDE----------------------------------- 180 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~v--d~d~----------------------------------- 180 (348)
.++.+++.|.-+.|+.|+++.+.++++.+. ++.+..+ ....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 368899999999999999999999887652 2333222 2100
Q ss_pred ----chhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 181 ----SEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 181 ----~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
.+++.++++++||+++||++ +.||+.+
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~ 214 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV 214 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe
Confidence 02456889999999999998 6678765
No 362
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.93 E-value=0.0031 Score=54.47 Aligned_cols=101 Identities=11% Similarity=0.241 Sum_probs=74.7
Q ss_pred cceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCc
Q 018973 231 SAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVE 310 (348)
Q Consensus 231 ~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~ 310 (348)
..|+.+...+...+..+.. .+-.|||..|...-+.|.-+...|..++..|+ .++|+++-.+..- ..|-=..
T Consensus 91 G~V~~ISg~dyv~EVT~As--~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~cI------pNYPe~n 161 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKAS--EGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTCI------PNYPESN 161 (240)
T ss_pred cceeeccchHHHHHHHhcc--CccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEeccccccc------CCCcccC
Confidence 3466666656566555543 57889999999999999999999999999996 5999998755421 1222367
Q ss_pred cceEEEEeCCeEEEEEeC------C--ChHHHHHHHHH
Q 018973 311 VPTFLFIRDGQIRGRYVG------S--GKGELIGEILR 340 (348)
Q Consensus 311 ~PTl~~~~~G~~v~~~~G------~--~~~~L~~~l~~ 340 (348)
+||+++|..|.+...+.| . +.+++..+|-+
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 999999999988776654 3 56677766654
No 363
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.93 E-value=0.0041 Score=54.65 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=46.8
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcE--EEEEeCCC------------------------------------
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVE--FILVMGDE------------------------------------ 180 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~--f~~vd~d~------------------------------------ 180 (348)
++..++.|+-+.|++|+++.+.+.+ ...++. ++-+....
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 6899999999999999999998876 222322 22222111
Q ss_pred ----chhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 181 ----SEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 181 ----~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
.+++.++++++||+++||++ +.+|+.+
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~ 184 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRVV 184 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeEe
Confidence 02346889999999999997 7777654
No 364
>PRK10824 glutaredoxin-4; Provisional
Probab=96.91 E-value=0.003 Score=50.57 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=42.2
Q ss_pred hhHHHHhhhcccCCcEEEEEEeC----CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhC-CCCccceE
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGL----KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDM-NVVEVPTF 314 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~-~V~~~PTl 314 (348)
+..++.++ ..+|+|+--+ |||++|.+....|.++. +.|..+|+++.++.++-.+++ |-..+|
T Consensus 6 ~~v~~~I~-----~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVP-- 72 (115)
T PRK10824 6 EKIQRQIA-----ENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFP-- 72 (115)
T ss_pred HHHHHHHh-----cCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCC--
Confidence 34455554 3455554443 69999999877776642 445556777666544434333 344444
Q ss_pred EEEeCCeEEE
Q 018973 315 LFIRDGQIRG 324 (348)
Q Consensus 315 ~~~~~G~~v~ 324 (348)
.+|-+|+.++
T Consensus 73 QIFI~G~~IG 82 (115)
T PRK10824 73 QLWVDGELVG 82 (115)
T ss_pred eEEECCEEEc
Confidence 4455888764
No 365
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.89 E-value=0.0043 Score=47.34 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=42.9
Q ss_pred CCEEEEEEeC----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEEeeccccc
Q 018973 139 NKLVVVEFAA----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 139 ~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
+.+|+|.-.. +||+.|++....|++. ++.|..+|+++.++. .++.+..|-+.+|++. .+|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence 4556665432 7999999999888774 366777777665433 4455566888999974 366544
No 366
>PRK10638 glutaredoxin 3; Provisional
Probab=96.85 E-value=0.0062 Score=45.56 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=43.4
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-HHHHHHhCCCCccceEEEEeCCeEEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-CMQFLRDMNVVEVPTFLFIRDGQIRG 324 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~~~l~~~~~V~~~PTl~~~~~G~~v~ 324 (348)
++.|..+||++|++....|.+. .+.+..+|++++++ ..++.+..+...+|++++ +|+.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678889999999987776652 36677788877653 234666678889998744 776653
No 367
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.79 E-value=0.006 Score=45.99 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=45.4
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchh-----------------------------HHHHHHhCC
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDS-----------------------------CMQFLRDMN 307 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-----------------------------~~~l~~~~~ 307 (348)
+..|+.+.|+.|..+.+.+.++.....+++.+......-... ..++++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999876666666666554321110 123566789
Q ss_pred CCccceEEEEe
Q 018973 308 VVEVPTFLFIR 318 (348)
Q Consensus 308 V~~~PTl~~~~ 318 (348)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999854
No 368
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.79 E-value=0.011 Score=45.86 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCEEEEEEe----CCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEEe
Q 018973 128 EEFDEALRLAKNKLVVVEFA----ASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSFY 202 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~----a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~ 202 (348)
+..+++++ +..|+|+-. ++||+.|++....|.++ ++.|..+|+++.++. .++.+..|...+|.+.+
T Consensus 3 ~~v~~~i~---~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi- 73 (97)
T TIGR00365 3 ERIKEQIK---ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV- 73 (97)
T ss_pred HHHHHHhc---cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE-
Confidence 44555564 345555443 38999999999888774 466778887664432 34555667788998754
Q ss_pred eccccc
Q 018973 203 KSMEKI 208 (348)
Q Consensus 203 ~~g~~v 208 (348)
+|+.+
T Consensus 74 -~g~~i 78 (97)
T TIGR00365 74 -KGEFV 78 (97)
T ss_pred -CCEEE
Confidence 56543
No 369
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.74 E-value=0.012 Score=46.93 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=55.5
Q ss_pred hhhhhhhhHHHHHHHHhC-CcEEEEEEECCCchhHHHHHHhCCCCc----cceEEEEeCCeEEEEEeC-C-ChHHHHHHH
Q 018973 266 GPCVKVYPTVIKLSRQMA-GTVVFARMNGDENDSCMQFLRDMNVVE----VPTFLFIRDGQIRGRYVG-S-GKGELIGEI 338 (348)
Q Consensus 266 ~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~~~l~~~~~V~~----~PTl~~~~~G~~v~~~~G-~-~~~~L~~~l 338 (348)
..-......+.++++.++ +++.|+.+|.++... .++.||+.. +|++.++..+.......+ . +.+.|.+|+
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~---~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~ 107 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH---ELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFL 107 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH---HHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHH
Confidence 445677888999999999 699999999998776 889999984 999988763322222222 2 668899998
Q ss_pred HHH
Q 018973 339 LRY 341 (348)
Q Consensus 339 ~~~ 341 (348)
+++
T Consensus 108 ~~f 110 (111)
T cd03073 108 EDF 110 (111)
T ss_pred HHh
Confidence 875
No 370
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.72 E-value=0.011 Score=50.53 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEE
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMN 292 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 292 (348)
+.++.++.|+...|++|+.+.+.+.++.+++++++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 36888999999999999999999999988887666665443
No 371
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.012 Score=54.41 Aligned_cols=112 Identities=13% Similarity=0.306 Sum_probs=82.3
Q ss_pred CccceeecCChhhHHHHhhhcccCCcEEEEEEeC----CCChhhhhhhhHHHHHHHHhC------C--cEEEEEEECCCc
Q 018973 229 SHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGL----KHCGPCVKVYPTVIKLSRQMA------G--TVVFARMNGDEN 296 (348)
Q Consensus 229 ~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~------~--~v~~~~vd~~~~ 296 (348)
....++.. +.+.+..+++.. ..+-.++++|.| ..|.-|.....++.-++..+. + ++-|..||.++.
T Consensus 38 s~~~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 38 SESGVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred CCCCeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 44556666 457788888742 346678888887 469999999999988887762 2 578999999998
Q ss_pred hhHHHHHHhCCCCccceEEEEe--CCeEEE--EE----eCCChHHHHHHHHHHhCCC
Q 018973 297 DSCMQFLRDMNVVEVPTFLFIR--DGQIRG--RY----VGSGKGELIGEILRYQGVR 345 (348)
Q Consensus 297 ~~~~~l~~~~~V~~~PTl~~~~--~G~~v~--~~----~G~~~~~L~~~l~~~~~~~ 345 (348)
++ +.++|+++.+|++.+|. .|++.. .+ .|...+.+.+++++...++
T Consensus 116 p~---~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 116 PQ---VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred HH---HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 87 99999999999999993 343331 11 2335788888888775543
No 372
>PRK13189 peroxiredoxin; Provisional
Probab=96.70 E-value=0.0038 Score=56.04 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=40.0
Q ss_pred CCC-EEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHH
Q 018973 138 KNK-LVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELC 188 (348)
Q Consensus 138 ~~k-~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~ 188 (348)
+++ .||+.|+++||+.|....+.|.++++++. ++.++.|.+|....+.+.+
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 466 45567889999999999999999999884 5899999998754333333
No 373
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.69 E-value=0.0074 Score=45.48 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=44.5
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeC--CCch---------------------------hHHHHHHHcC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMG--DESE---------------------------KTKELCEREK 192 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~--d~~~---------------------------~~~~l~~~~~ 192 (348)
|+.|+.+.|+.|..+.+.++++.+.+++ +.+..+.+ .... +...+++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999765544 55554443 2210 1235678899
Q ss_pred cCCCCeEEEee
Q 018973 193 IKKVPHFSFYK 203 (348)
Q Consensus 193 V~~~Pt~~~~~ 203 (348)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998864
No 374
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.56 E-value=0.016 Score=44.27 Aligned_cols=73 Identities=26% Similarity=0.366 Sum_probs=56.6
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC-CcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN-DVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+.++.+.+++++.+. .++++||-|+.++|+ .....+.++|+.+. ++.|+.+.- +++++++++. .|++
T Consensus 1 ~~~i~s~~~l~~~~~--~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~------~~~~~~~~~~-~~~i 68 (97)
T cd02981 1 VKELTSKEELEKFLD--KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD------KEVAKKLKVK-PGSV 68 (97)
T ss_pred CeecCCHHHHHHHhc--cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh------HHHHHHcCCC-CCce
Confidence 356778888998776 688899999999987 46678888998886 588877762 2477778876 4899
Q ss_pred EEeecc
Q 018973 200 SFYKSM 205 (348)
Q Consensus 200 ~~~~~g 205 (348)
++|+..
T Consensus 69 ~l~~~~ 74 (97)
T cd02981 69 VLFKPF 74 (97)
T ss_pred EEeCCc
Confidence 988764
No 375
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.53 E-value=0.011 Score=50.51 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEE
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFI 174 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~ 174 (348)
.+++.|+.|+...|++|+.+.+.+.++.+++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 468899999999999999999999999998865 5443
No 376
>PRK10824 glutaredoxin-4; Provisional
Probab=96.42 E-value=0.015 Score=46.52 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCEEEEEEeC----CCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhH-HHHHHHcCcCCCCeEEE
Q 018973 127 IEEFDEALRLAKNKLVVVEFAA----SRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKT-KELCEREKIKKVPHFSF 201 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~ 201 (348)
.+..+++++ +.+|||.--. |||+.|++....|.++. +.|..+|+++.++. ..+.+.-|-+.+|.+.+
T Consensus 5 ~~~v~~~I~---~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 5 IEKIQRQIA---ENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHHh---cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 344555664 4555554443 69999999998888763 44445566654332 23334446667777554
Q ss_pred eeccccc
Q 018973 202 YKSMEKI 208 (348)
Q Consensus 202 ~~~g~~v 208 (348)
+|+-+
T Consensus 77 --~G~~I 81 (115)
T PRK10824 77 --DGELV 81 (115)
T ss_pred --CCEEE
Confidence 66555
No 377
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.39 E-value=0.024 Score=50.18 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCCChhhhhhhhHH---HHHHHHhCCcEEEEEEEC
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTV---IKLSRQMAGTVVFARMNG 293 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~ 293 (348)
+++.||.|+.-.|++|..+.+.+ ..+.+.+++++.++++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45668999999999999999866 788888876766666554
No 378
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.03 Score=47.18 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCC-cEEEEEEECCCchhHHH------------------HHHhCCCCc-
Q 018973 252 DQKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAG-TVVFARMNGDENDSCMQ------------------FLRDMNVVE- 310 (348)
Q Consensus 252 ~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~~~------------------l~~~~~V~~- 310 (348)
.+++|||+|| ..+++.|-...-.|.+...++.. ++.++.|..|.....+. +++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 5779999999 67888898888888887777743 47788888775444333 555566632
Q ss_pred -----------cc-eEEEEeCCeEEEEEeCC----ChHHHHHHHHHH
Q 018973 311 -----------VP-TFLFIRDGQIRGRYVGS----GKGELIGEILRY 341 (348)
Q Consensus 311 -----------~P-Tl~~~~~G~~v~~~~G~----~~~~L~~~l~~~ 341 (348)
.+ ||++.++|++....... ..+++.+.|+++
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 24 78888999998877544 355677666654
No 379
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.35 E-value=0.012 Score=52.06 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=31.8
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHH---HHHHHHcCC-cEEEEEeC
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFM---VDLSRQCND-VEFILVMG 178 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~-v~f~~vd~ 178 (348)
+++.||+|+.-.|++|+.+.+.+ +.+.+.+++ +.|+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46779999999999999999876 778888874 66665553
No 380
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.34 E-value=0.03 Score=43.14 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=63.6
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCCchhHHHHHHHcCcC----C
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDESEKTKELCEREKIK----K 195 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~~~~~~~l~~~~~V~----~ 195 (348)
+..|.+..+|..+|. ..+-|+|.|..+--..-.. ...+.+.|++..+ -.++.|||.+.+ .+.||+++.|. -
T Consensus 3 ie~i~d~KdfKKLLR--Tr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp 78 (112)
T cd03067 3 IEDISDHKDFKKLLR--TRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKP 78 (112)
T ss_pred cccccchHHHHHHHh--hcCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCC
Confidence 457788999999997 4566788887665433333 3467777877766 789999998755 68999999999 5
Q ss_pred CCe-EEEeecccccccc
Q 018973 196 VPH-FSFYKSMEKIHEE 211 (348)
Q Consensus 196 ~Pt-~~~~~~g~~v~~~ 211 (348)
-|. +.-|++|.--.++
T Consensus 79 ~~~~LkHYKdG~fHkdY 95 (112)
T cd03067 79 KPVELKHYKDGDFHTEY 95 (112)
T ss_pred CcchhhcccCCCccccc
Confidence 665 5677888655444
No 381
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.26 E-value=0.011 Score=48.98 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=35.2
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG 178 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~ 178 (348)
..+++|+.|+..+|++|+.+.|.+.++..+++++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 46789999999999999999999999988888776666554
No 382
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.23 E-value=0.04 Score=42.50 Aligned_cols=99 Identities=10% Similarity=0.231 Sum_probs=74.0
Q ss_pred ecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC----c
Q 018973 235 QLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV----E 310 (348)
Q Consensus 235 ~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~----~ 310 (348)
.+.+..+|.+++.. ..-|+|.|..+. ..-......+.++++...++-+++.|||...+ .+.||+++.|. -
T Consensus 5 ~i~d~KdfKKLLRT----r~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp 78 (112)
T cd03067 5 DISDHKDFKKLLRT----RNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKP 78 (112)
T ss_pred cccchHHHHHHHhh----cCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCC
Confidence 45667889999885 355666666543 33344456788899999888999999998644 46799999998 5
Q ss_pred cc-eEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 018973 311 VP-TFLFIRDGQIRGRYVGS-GKGELIGEIL 339 (348)
Q Consensus 311 ~P-Tl~~~~~G~~v~~~~G~-~~~~L~~~l~ 339 (348)
-| ++.-|++|..-..|... +...+..|+.
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 56 57778999877777766 7888888875
No 383
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.22 E-value=0.014 Score=57.25 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=43.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHH---------cCcCCCCeEEEeeccccc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCER---------EKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~---------~~V~~~Pt~~~~~~g~~v 208 (348)
|+.|..+||++|++.+..|.+ .++.|-.+|+++.+...++.++ .|.+.+|++.+ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-----~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-----NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 778999999999999988887 4688888888875543333322 47889999866 45443
No 384
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.19 E-value=0.052 Score=42.29 Aligned_cols=95 Identities=7% Similarity=0.074 Sum_probs=64.6
Q ss_pred eeecCChhhHHHHhh-hcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCcc
Q 018973 233 VVQLHSKEDVEKLID-DHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEV 311 (348)
Q Consensus 233 v~~~~s~~~~~~~l~-~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~ 311 (348)
+..+.+.+++++++. . +..++|-|+..--.+ ....+.+++..+++.+.|+..... + +++.+++. .
T Consensus 2 v~~i~~~~~~e~~~~~~----~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~~~-~ 67 (102)
T cd03066 2 VEIINSERELQAFENIE----DDIKLIGYFKSEDSE---HYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLGLK-M 67 (102)
T ss_pred ceEcCCHHHHHHHhccc----CCeEEEEEECCCCCH---HHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcCCC-C
Confidence 345667888998886 4 345555555543333 445688899998777888655432 3 77788765 7
Q ss_pred ceEEEEeC-CeEEEEE-eCC-ChHHHHHHHHHH
Q 018973 312 PTFLFIRD-GQIRGRY-VGS-GKGELIGEILRY 341 (348)
Q Consensus 312 PTl~~~~~-G~~v~~~-~G~-~~~~L~~~l~~~ 341 (348)
|+++++++ .+....| .|. +.+.|.+||...
T Consensus 68 ~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 68 NEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 99999865 4434456 667 899999999864
No 385
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.02 E-value=0.04 Score=50.43 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC---C-Cc---------------------------------
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG---D-ES--------------------------------- 181 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~---d-~~--------------------------------- 181 (348)
.+.+|+.|.=+.|+.|+++.+.+.++.+. +++.+..+.. . ++
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 57889999999999999999988876654 2333322221 0 00
Q ss_pred ----------hhHHHHHHHcCcCCCCeEEEeeccccccccccCC
Q 018973 182 ----------EKTKELCEREKIKKVPHFSFYKSMEKIHEEEGIG 215 (348)
Q Consensus 182 ----------~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G~~ 215 (348)
+++.++++++||+++|++++-.+...+..+.|..
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~ 239 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLP 239 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCC
Confidence 1234578889999999998875322333455543
No 386
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.021 Score=48.10 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHhcCCCEEEEEEe-CCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCCchhHHHHHHHcCcC
Q 018973 134 LRLAKNKLVVVEFA-ASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 134 l~~~~~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
|.+.+++.||++|| ..+++.|-...-.|.+...++. ++.++.|..|....++.++++++.+
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 34447889999999 5789999998888888888775 4899999999888788899998877
No 387
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.018 Score=58.63 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=61.8
Q ss_pred ChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhH-H--HHHHHHhCCcEEEEEEECCCchhHHHHHH----hC-CCC
Q 018973 238 SKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPT-V--IKLSRQMAGTVVFARMNGDENDSCMQFLR----DM-NVV 309 (348)
Q Consensus 238 s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~~~l~~----~~-~V~ 309 (348)
+.+.|.+.-. .+||++|.++.+||..|..|... + .++++-+...+.-++||.++.+++-.+.. .. |-.
T Consensus 32 ~~eAf~~A~~----edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 32 GEEAFAKAKE----EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred CHHHHHHHHH----hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 4566666654 48999999999999999998653 2 56677776678899999999988333222 21 356
Q ss_pred ccc-eEEEEeCCeEEE
Q 018973 310 EVP-TFLFIRDGQIRG 324 (348)
Q Consensus 310 ~~P-Tl~~~~~G~~v~ 324 (348)
++| |+++-.+|+...
T Consensus 108 GWPLtVfLTPd~kPFf 123 (667)
T COG1331 108 GWPLTVFLTPDGKPFF 123 (667)
T ss_pred CCceeEEECCCCceee
Confidence 899 788888999874
No 388
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.80 E-value=0.17 Score=40.54 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=65.0
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHH-HHh--CCcEEEEEEECCCch--hHHHHHHhCCC--Ccc
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLS-RQM--AGTVVFARMNGDEND--SCMQFLRDMNV--VEV 311 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la-~~~--~~~v~~~~vd~~~~~--~~~~l~~~~~V--~~~ 311 (348)
.-.|++++.. .+.++|.|=... |=-.-...+.+++ +.. .+++.++.|-+.+.. +.++|+++|+| ..+
T Consensus 11 ~~tFdKvi~k----f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 11 ELTFDKVIPK----FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp TTHHHHHGGG----SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred ceehhheecc----CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 3568888875 588999996542 2233344577777 333 245888888775432 34569999999 678
Q ss_pred ceEEEEe-CCeEEEEE--eCC-ChHHHHHHHHHHhCCC
Q 018973 312 PTFLFIR-DGQIRGRY--VGS-GKGELIGEILRYQGVR 345 (348)
Q Consensus 312 PTl~~~~-~G~~v~~~--~G~-~~~~L~~~l~~~~~~~ 345 (348)
|.+.+|. +.+..-++ .|. +.++|++|+.++.++.
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred CEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence 9998886 44444556 676 8999999999886654
No 389
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.67 E-value=0.025 Score=47.74 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=50.7
Q ss_pred CEEEEEEeCCCCHHHHhh-hhHHHHHHHHcC--Cc-EEEEEeCCCchhHHHHHHHcCcC-CCCeEEEeecccccccccc
Q 018973 140 KLVVVEFAASRSLDSSKI-YPFMVDLSRQCN--DV-EFILVMGDESEKTKELCEREKIK-KVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 140 k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~--~v-~f~~vd~d~~~~~~~l~~~~~V~-~~Pt~~~~~~g~~v~~~~G 213 (348)
..||+.|.+.||+.|... .+.|.+..+++. ++ .++.|..|.....++.++++++. .+| ++-..+..+.+..|
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~--lLsD~~~~~~~~yg 107 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR--FLADGNGEFTKALG 107 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE--EEECCCHHHHHHcC
Confidence 445555557899999998 999999888874 56 69999999877778889998883 343 33333344444444
No 390
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.64 E-value=0.035 Score=54.48 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHh---------CCCCccceEEEEeCCeEE
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRD---------MNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~---------~~V~~~PTl~~~~~G~~v 323 (348)
|+.|..+||++|.+.+..|.+. ++.|..+|+++.+...++.++ .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6788999999999986666652 477888899876643333333 46788999866 66544
No 391
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.43 E-value=0.11 Score=40.63 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=62.8
Q ss_pred eecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccce
Q 018973 234 VQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPT 313 (348)
Q Consensus 234 ~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PT 313 (348)
..+.+.+++++++.. ++.++|-|+..--. .....+.+++..+++++.|+..... . +++++++ .|+
T Consensus 3 ~~i~s~~~l~~f~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~~--~~~ 67 (104)
T cd03069 3 VELRTEAEFEKFLSD----DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYGY--GEG 67 (104)
T ss_pred cccCCHHHHHHHhcc----CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcCC--CCc
Confidence 456678888888764 45566666654333 3455688889888777888665533 3 7888988 688
Q ss_pred EEEEe------C-CeEEEEEeCC-ChHHHHHHHHHH
Q 018973 314 FLFIR------D-GQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 314 l~~~~------~-G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
+++|+ + ......|.|. +.++|.+||...
T Consensus 68 ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 68 VVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred eEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 88882 1 1222346787 888999999764
No 392
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.094 Score=41.13 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=44.1
Q ss_pred hHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHH-hCCCCccceEEEEe
Q 018973 241 DVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLR-DMNVVEVPTFLFIR 318 (348)
Q Consensus 241 ~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~-~~~V~~~PTl~~~~ 318 (348)
..++.+.+ .+ +|.|..+||+.|..+...|.+ ++...+++.+|.+++. +++.... --+.+.+|.+++
T Consensus 6 ~v~~~i~~-----~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI-- 73 (104)
T KOG1752|consen 6 KVRKMISE-----NP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI-- 73 (104)
T ss_pred HHHHHhhc-----CC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--
Confidence 34555543 34 456899999999997666655 5445667777766443 3332222 234567887665
Q ss_pred CCeEE
Q 018973 319 DGQIR 323 (348)
Q Consensus 319 ~G~~v 323 (348)
+|+.+
T Consensus 74 ~Gk~i 78 (104)
T KOG1752|consen 74 GGKFI 78 (104)
T ss_pred CCEEE
Confidence 88776
No 393
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.31 E-value=0.086 Score=47.31 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=63.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCC------------------chh-------HHHHHHhC
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDE------------------NDS-------CMQFLRDM 306 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~------------------~~~-------~~~l~~~~ 306 (348)
.++|.||.|++-.||+-+.-...+++++++|.+.+.|+.|.+.| ... ++.+.+++
T Consensus 101 g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~ 180 (237)
T PF00837_consen 101 GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF 180 (237)
T ss_pred CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999998766666665432 111 11122211
Q ss_pred ----------------CCCccc-eEEEEeCCeEEEEEe-CC---ChHHHHHHHHHH
Q 018973 307 ----------------NVVEVP-TFLFIRDGQIRGRYV-GS---GKGELIGEILRY 341 (348)
Q Consensus 307 ----------------~V~~~P-Tl~~~~~G~~v~~~~-G~---~~~~L~~~l~~~ 341 (348)
.-..+| .+.++++|+++..-. |. +.++++++|+++
T Consensus 181 ~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 181 PQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 013578 577779999875421 22 689999999875
No 394
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.25 E-value=0.065 Score=39.89 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=45.4
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEee
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYK 203 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 203 (348)
|+.|..+.|.-|..+...|.++..+.+ +.+-.||++++ +++..+|+. .+|.+.+-.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d---~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDED---PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTT---HHHHHHSCT-STSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCC---HHHHHHhcC-CCCEEEEcC
Confidence 678999999999999999988665544 89999999984 459999996 699977643
No 395
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.087 Score=48.81 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=67.4
Q ss_pred CCCceEecCHHHHHHHHHhc-CCCEEEEEEeCC----CCHHHHhhhhHHHHHHHHcC---------CcEEEEEeCCCchh
Q 018973 118 DERVKKVHSIEEFDEALRLA-KNKLVVVEFAAS----RSLDSSKIYPFMVDLSRQCN---------DVEFILVMGDESEK 183 (348)
Q Consensus 118 ~~~v~~v~s~~~f~~~l~~~-~~k~vvV~F~a~----wC~~C~~~~p~l~~la~~~~---------~v~f~~vd~d~~~~ 183 (348)
+..|..+ +.+.|...+... ++-.++|+|.|. .|.-|+..+..+.-+++.+. .+-|..||.|+
T Consensus 39 ~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e--- 114 (331)
T KOG2603|consen 39 ESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE--- 114 (331)
T ss_pred CCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---
Confidence 3457777 788888887742 377899999985 59999999999999988641 16899999999
Q ss_pred HHHHHHHcCcCCCCeEEEeec
Q 018973 184 TKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 184 ~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
.+++-+.+++..+|++..|..
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCC
Confidence 556999999999999999953
No 396
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.64 E-value=0.4 Score=39.21 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=60.5
Q ss_pred CCceEecCHHHHHHHHHhcCCCEEEEEEeCC--CCHH-H-HhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcC
Q 018973 119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAAS--RSLD-S-SKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREK 192 (348)
Q Consensus 119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~--wC~~-C-~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~ 192 (348)
..++++.+.+.+++...+ +..-+|-|.-. .|.+ + ..+...|.++|++|.+ +.|+.+|.++ ...+.+.||
T Consensus 2 ~~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~---~~~~~~~fg 76 (130)
T cd02983 2 PEIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA---QLDLEEALN 76 (130)
T ss_pred CceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc---cHHHHHHcC
Confidence 367888888888887753 45555555432 2333 3 4567889999999976 7999999999 444899999
Q ss_pred cC--CCCeEEEeecc
Q 018973 193 IK--KVPHFSFYKSM 205 (348)
Q Consensus 193 V~--~~Pt~~~~~~g 205 (348)
|. .+|+++++...
T Consensus 77 l~~~~~P~v~i~~~~ 91 (130)
T cd02983 77 IGGFGYPAMVAINFR 91 (130)
T ss_pred CCccCCCEEEEEecc
Confidence 96 49999988754
No 397
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=94.62 E-value=0.19 Score=39.88 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH---cCC-cEEEEEeCCCchhHHHHHHHcCcCC--CCeE
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ---CND-VEFILVMGDESEKTKELCEREKIKK--VPHF 199 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~---~~~-v~f~~vd~d~~~~~~~l~~~~~V~~--~Pt~ 199 (348)
|.+....... .+.+..+.|+ .-..-..+...+.++|++ +.+ +.|+.+|.++. ....+.+|++. +|.+
T Consensus 5 t~e~~~~~~~--~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~---~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 5 TFENAEELTE--EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF---RHPLLHLGKTPADLPVI 77 (111)
T ss_pred ccccHHHHhc--CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh---hhHHHHcCCCHhHCCEE
Confidence 5666666665 4555555566 222346788999999999 987 99999999984 34889999997 8998
Q ss_pred EEeec
Q 018973 200 SFYKS 204 (348)
Q Consensus 200 ~~~~~ 204 (348)
.+...
T Consensus 78 ~i~~~ 82 (111)
T cd03072 78 AIDSF 82 (111)
T ss_pred EEEcc
Confidence 88754
No 398
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.097 Score=41.06 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch--hHHHHHHHcCcCCCCeEEEeecc
Q 018973 128 EEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE--KTKELCEREKIKKVPHFSFYKSM 205 (348)
Q Consensus 128 ~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~--~~~~l~~~~~V~~~Pt~~~~~~g 205 (348)
+.+++.+. ..+ +|.|..+||+.|.++...|.+ .-....++.+|-++.. -...+.+--+-+.+|.+.+ +|
T Consensus 5 ~~v~~~i~---~~~-VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~G 75 (104)
T KOG1752|consen 5 AKVRKMIS---ENP-VVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GG 75 (104)
T ss_pred HHHHHHhh---cCC-EEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CC
Confidence 34555554 333 556899999999998777666 1122567777755432 1122333345678888765 66
Q ss_pred ccc
Q 018973 206 EKI 208 (348)
Q Consensus 206 ~~v 208 (348)
+-+
T Consensus 76 k~i 78 (104)
T KOG1752|consen 76 KFI 78 (104)
T ss_pred EEE
Confidence 544
No 399
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.51 E-value=1.2 Score=36.65 Aligned_cols=93 Identities=14% Similarity=0.251 Sum_probs=62.4
Q ss_pred ccCCcEEEEEEeCCCCh----hhhhhhhHHHHHHHHhCCcEEEEEEECCCchh---------------HHHHHHhCCCCc
Q 018973 250 KVDQKLIVLDVGLKHCG----PCVKVYPTVIKLSRQMAGTVVFARMNGDENDS---------------CMQFLRDMNVVE 310 (348)
Q Consensus 250 ~~~~k~vvV~F~a~wC~----~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---------------~~~l~~~~~V~~ 310 (348)
....|+.+|+...+.-. .|+...- =+.+.+-+++++.+..-|+...+. ..+.++.++...
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 44689999999988664 4554420 033333334567777778765431 334667788999
Q ss_pred cceEEEE-eC-C--eEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 311 VPTFLFI-RD-G--QIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 311 ~PTl~~~-~~-G--~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+|.+.++ +. + .++.++.|. +.++|...|.....
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 9987666 22 2 677899999 99999998876543
No 400
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=94.38 E-value=0.16 Score=40.78 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=53.0
Q ss_pred eEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHH-HH---cCCcEEEEEeCCCc--hhHHHHHHHcCc--
Q 018973 122 KKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLS-RQ---CNDVEFILVMGDES--EKTKELCEREKI-- 193 (348)
Q Consensus 122 ~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la-~~---~~~v~f~~vd~d~~--~~~~~l~~~~~V-- 193 (348)
+.+ +.=.|+.++. +.+.++|.|=... |--.-...+.+++ +. -+++.++.|-+.+. .++.+|+++|+|
T Consensus 7 v~L-D~~tFdKvi~--kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 7 VPL-DELTFDKVIP--KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp EEE-STTHHHHHGG--GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred eec-cceehhheec--cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 344 5678999998 5799999995432 2233455677777 33 24588888886642 246789999999
Q ss_pred CCCCeEEEeecc
Q 018973 194 KKVPHFSFYKSM 205 (348)
Q Consensus 194 ~~~Pt~~~~~~g 205 (348)
+.+|.+.+|.+|
T Consensus 82 e~fPv~~LF~~~ 93 (126)
T PF07912_consen 82 EDFPVIYLFVGD 93 (126)
T ss_dssp CC-SEEEEEESS
T ss_pred ccCCEEEEecCC
Confidence 678999999843
No 401
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.06 E-value=0.13 Score=43.27 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=31.0
Q ss_pred cEEEEEEeCCCChhhhhh-hhHHHHHHHHhCC-cE-EEEEEECCCch
Q 018973 254 KLIVLDVGLKHCGPCVKV-YPTVIKLSRQMAG-TV-VFARMNGDEND 297 (348)
Q Consensus 254 k~vvV~F~a~wC~~C~~~-~p~l~~la~~~~~-~v-~~~~vd~~~~~ 297 (348)
..+++.|.+.||+.|... .+.|.+...++.. .+ .++.+..+...
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~ 77 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF 77 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH
Confidence 344444458999999998 8999888888742 24 47777766433
No 402
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.67 Score=38.75 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECCC--------chhHHHHHHh-CCCC------------
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGDE--------NDSCMQFLRD-MNVV------------ 309 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~--------~~~~~~l~~~-~~V~------------ 309 (348)
.+++++|.=.|+-|+.-- ....|+.|.+.|+++ +.++..-+++ +.++.++|+. |||+
T Consensus 24 ~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~ 102 (162)
T COG0386 24 KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGK 102 (162)
T ss_pred CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCC
Confidence 477777777888887654 334567777777543 5555554432 2234445543 2221
Q ss_pred ------------------------ccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 310 ------------------------EVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 310 ------------------------~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
.+=-+++.++|+++.|+... .++++...|+++++
T Consensus 103 ~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 103 NAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 12347888999999999988 88888888888764
No 403
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=93.66 E-value=0.59 Score=41.44 Aligned_cols=92 Identities=18% Similarity=0.328 Sum_probs=62.8
Q ss_pred CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhC----CcEEEEEEECCCc--------------------------hhHH
Q 018973 252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMA----GTVVFARMNGDEN--------------------------DSCM 300 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~----~~v~~~~vd~~~~--------------------------~~~~ 300 (348)
.+++++|+|.-+.|+. |-.+...+.++.++.. .++.++.|.+|-. +..+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 6899999999999986 9888888877777764 2354444444321 1234
Q ss_pred HHHHhCCCCc--cc-----------e---EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 301 QFLRDMNVVE--VP-----------T---FLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 301 ~l~~~~~V~~--~P-----------T---l~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
+++++|+|.. +| + +++..+|++...+.+. +++++.+.|++++.
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 4666666652 11 1 2333689999888877 88889998888754
No 404
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.64 E-value=0.64 Score=38.87 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=39.7
Q ss_pred EEEEeCC------CChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHH-HHHHhCCC----CccceEEEEeCCeEEE
Q 018973 257 VLDVGLK------HCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCM-QFLRDMNV----VEVPTFLFIRDGQIRG 324 (348)
Q Consensus 257 vV~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~-~l~~~~~V----~~~PTl~~~~~G~~v~ 324 (348)
|+.|.++ +|++|..+...|..+ .+.|-.+|++..++.. +|.+.++- ..+|.+.+ +|+.++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 3445566 899999987777653 4778889998765422 35555554 56776655 776553
No 405
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.23 E-value=0.24 Score=41.29 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=35.8
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc--CC-cEEEEEeCCC
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC--ND-VEFILVMGDE 180 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~-v~f~~vd~d~ 180 (348)
..+.+|+.|+..-|++|+.+.+.+.++.+++ ++ +.|+.+++-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 4688999999999999999999999999998 44 8888887643
No 406
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.42 Score=36.87 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=42.9
Q ss_pred CcEEEEEEeC---CCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceE-EEEeCCeEEE
Q 018973 253 QKLIVLDVGL---KHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTF-LFIRDGQIRG 324 (348)
Q Consensus 253 ~k~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl-~~~~~G~~v~ 324 (348)
++.++.+=++ |-|+...+. .++...++. +.|..+|+-.++++++=.++| ..+||+ .+|-+|+.++
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~----vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~--s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQA----VQILSACGV-VDFAYVDVLQDPEIRQGLKEY--SNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CceEEEecCCCCCCCCCccHHH----HHHHHHcCC-cceeEEeeccCHHHHhccHhh--cCCCCCceeeECCEEec
Confidence 3444444444 455555554 444444443 789999999888866655555 689998 8889998774
No 407
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=92.70 E-value=0.4 Score=41.35 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=25.9
Q ss_pred EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEE
Q 018973 259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARM 291 (348)
Q Consensus 259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v 291 (348)
+|..|.|+.|-...|.+.++..++++++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 688999999999999999999999877665544
No 408
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=92.29 E-value=0.78 Score=36.37 Aligned_cols=50 Identities=6% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHhhhhHHHHHHHHcC-C-cEEEEEeCCCchhHHHHHHHcCcCC----CCeEEEeec
Q 018973 152 LDSSKIYPFMVDLSRQCN-D-VEFILVMGDESEKTKELCEREKIKK----VPHFSFYKS 204 (348)
Q Consensus 152 ~~C~~~~p~l~~la~~~~-~-v~f~~vd~d~~~~~~~l~~~~~V~~----~Pt~~~~~~ 204 (348)
..-..+...+.++|++++ + +.|+.+|.++ .....+.||++. .|++.++..
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~---~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKED---FSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHH---HHHHHHHcCCCcccCCCCEEEEEeC
Confidence 445678899999999998 5 9999999887 344888999984 999988753
No 409
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.00 E-value=0.77 Score=38.40 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=40.6
Q ss_pred EEEEeCC------CCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchh-HHHHHHHcCc----CCCCeEEEeeccccc
Q 018973 143 VVEFAAS------RSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEK-TKELCEREKI----KKVPHFSFYKSMEKI 208 (348)
Q Consensus 143 vV~F~a~------wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~-~~~l~~~~~V----~~~Pt~~~~~~g~~v 208 (348)
||.|+++ +|+.|+++...|+.+ ++.|-.+|++.+++ ..+|.+..+- ..+|.+.+ +|+-+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4566667 999999999888874 57888899876543 3355555554 67787655 45433
No 410
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=91.71 E-value=0.94 Score=41.07 Aligned_cols=91 Identities=16% Similarity=0.325 Sum_probs=60.3
Q ss_pred CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhCCc------EEEEEEECCC-----------------------chhHHH
Q 018973 252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMAGT------VVFARMNGDE-----------------------NDSCMQ 301 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~~------v~~~~vd~~~-----------------------~~~~~~ 301 (348)
.++.++++|+-+.||. |-.....+.++.++...+ -.|+.+|-+. .++.++
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4899999999999997 877766666666654321 1466776432 223445
Q ss_pred HHHhCCCCcc--c-----------eEEEE---eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 018973 302 FLRDMNVVEV--P-----------TFLFI---RDGQIRGRYVGS-GKGELIGEILRYQ 342 (348)
Q Consensus 302 l~~~~~V~~~--P-----------Tl~~~---~~G~~v~~~~G~-~~~~L~~~l~~~~ 342 (348)
+|++|.|.-- | |+++| .+|+.+..+.-. +++++.+.|.++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 6777766321 1 34444 689888766555 8999999888764
No 411
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=91.39 E-value=2.7 Score=32.97 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=58.3
Q ss_pred eeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccc
Q 018973 233 VVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVP 312 (348)
Q Consensus 233 v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~P 312 (348)
+..+.+.+++++++.. .++.++|-|+..--. .....+.+++..+.+.+.|+..... . +.+++++. .|
T Consensus 2 v~~i~s~~ele~f~~~---~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~~~-~~ 68 (107)
T cd03068 2 SKQLQTLKQVQEFLRD---GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLKVS-PG 68 (107)
T ss_pred ceEcCCHHHHHHHHhc---CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcCCC-CC
Confidence 3456788888888764 225556656554333 3445688899998777888665433 3 77888876 56
Q ss_pred eEEEEeC-------CeEEEEEeCC--C-hHHHHHHHHH
Q 018973 313 TFLFIRD-------GQIRGRYVGS--G-KGELIGEILR 340 (348)
Q Consensus 313 Tl~~~~~-------G~~v~~~~G~--~-~~~L~~~l~~ 340 (348)
.+++|+. ......|.|. + .++|.+||++
T Consensus 69 ~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 69 QLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 6766621 1122333443 3 3448888875
No 412
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.06 E-value=2.9 Score=30.35 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=41.8
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHH
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIG 336 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~ 336 (348)
..++.++|+.|++..-.|.+. ++.|-.++++... ...++.+.-....+|+++...+|..+. +...+.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~-----es~~I~~ 71 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF-----ESADIVK 71 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE-----cHHHHHH
Confidence 456778999999976555443 2444445554332 122355555667899986433443322 4456666
Q ss_pred HHHHH
Q 018973 337 EILRY 341 (348)
Q Consensus 337 ~l~~~ 341 (348)
+|.+.
T Consensus 72 yL~~~ 76 (77)
T cd03041 72 YLFKT 76 (77)
T ss_pred HHHHh
Confidence 66653
No 413
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=90.57 E-value=4.3 Score=31.14 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=55.3
Q ss_pred hhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973 239 KEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318 (348)
Q Consensus 239 ~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~ 318 (348)
.+++...++.- .+...++.|..+. ..|..+...++++++-- +++.+...+.+. ..|++.+..
T Consensus 7 ~~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~--------------~~P~~~i~~ 68 (94)
T cd02974 7 KQQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE--------------RKPSFSINR 68 (94)
T ss_pred HHHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC--------------CCCEEEEec
Confidence 35566666543 3445555565555 89999998888888664 566664433211 379999887
Q ss_pred CCeEE-EEEeCC-ChHHHHHHHHHH
Q 018973 319 DGQIR-GRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 319 ~G~~v-~~~~G~-~~~~L~~~l~~~ 341 (348)
+|+.. -+|.|. .-.++..+|...
T Consensus 69 ~~~~~gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 69 PGEDTGIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred CCCcccEEEEecCCchhHHHHHHHh
Confidence 77432 477888 677788777653
No 414
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.03 E-value=3.7 Score=29.53 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=43.3
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe--CCeEEEEEeCCChHHH
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR--DGQIRGRYVGSGKGEL 334 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~--~G~~v~~~~G~~~~~L 334 (348)
+..|+.+.|+.|++..-.|.+. .+.|-.++++.... .++ +.-+...+|+++.-. +|+.+. +-..+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~-~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSR-KEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhH-HHH-HHhCCCccCEEEECCCCCccEEE-----cHHHH
Confidence 3467788999999987555543 23344444443211 123 334567899987653 243322 45667
Q ss_pred HHHHHHHhC
Q 018973 335 IGEILRYQG 343 (348)
Q Consensus 335 ~~~l~~~~~ 343 (348)
.++|++.+|
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 788887765
No 415
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.88 E-value=1.1 Score=32.64 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 141 LVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 141 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
.++..|-+..-+..++.-..+.++.+++.+ +.+-.||+.+ .+++++.++|-++||++-
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~---~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK---QPQLAEEDKIVATPTLVK 61 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc---CHhHHhhCCEEEechhhh
Confidence 356667777778888888888888877643 8888899999 556999999999999753
No 416
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=89.19 E-value=3.3 Score=31.97 Aligned_cols=73 Identities=12% Similarity=0.308 Sum_probs=49.6
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+..|.+.++++.++... +..+||-|+..--. .....+.++|+.+ .+..|+..... ++...+++. .|++
T Consensus 2 v~~i~~~~~~e~~~~~~-~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~~-~~~i 70 (102)
T cd03066 2 VEIINSERELQAFENIE-DDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLGLK-MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHhccc-CCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcCCC-CCcE
Confidence 57788999999998512 44555555554333 3456778888888 55888665422 367788775 7899
Q ss_pred EEeec
Q 018973 200 SFYKS 204 (348)
Q Consensus 200 ~~~~~ 204 (348)
+++++
T Consensus 71 ~l~~~ 75 (102)
T cd03066 71 DFYEP 75 (102)
T ss_pred EEeCC
Confidence 99875
No 417
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.03 E-value=4 Score=31.32 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSM 205 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g 205 (348)
.+++.+.+.+..+...++.|..+. ..|..+...++++++-.+.+.+...+.++ ..|++.+..+|
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~--------------~~P~~~i~~~~ 70 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE--------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC--------------CCCEEEEecCC
Confidence 456677777655666666666655 99999999999999887666554333211 47999998776
No 418
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=88.63 E-value=1 Score=35.26 Aligned_cols=45 Identities=4% Similarity=0.043 Sum_probs=32.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc----hhHHHHHHHcC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES----EKTKELCEREK 192 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~----~~~~~l~~~~~ 192 (348)
+..|+.++|+.|++....|++ .++.|-.+|..+. ++..++.+++|
T Consensus 1 i~iy~~~~C~~crka~~~L~~-----~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA-----RGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 357889999999999888876 3666667775543 24556666666
No 419
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.48 E-value=7.1 Score=28.02 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred EeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHHHH
Q 018973 260 VGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGEIL 339 (348)
Q Consensus 260 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~l~ 339 (348)
++.++|+.|++..-.+.... =.+.+..++..+.. .++.+...-..+|++. .+|..+. +-..+.++|+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~--~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~ 68 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKR--PEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLE 68 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTS--HHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcC----CeEEEeccCcccch--hHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHH
Confidence 67889999999754444321 12556666655432 2377777788999997 4577544 6677888888
Q ss_pred HHhCC
Q 018973 340 RYQGV 344 (348)
Q Consensus 340 ~~~~~ 344 (348)
+..+.
T Consensus 69 ~~~~~ 73 (75)
T PF13417_consen 69 ERYPG 73 (75)
T ss_dssp HHSTS
T ss_pred HHcCC
Confidence 77653
No 420
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=88.41 E-value=0.76 Score=41.12 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=37.5
Q ss_pred HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHH-----cCCcEEEEEeCC
Q 018973 134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQ-----CNDVEFILVMGD 179 (348)
Q Consensus 134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~-----~~~v~f~~vd~d 179 (348)
+.++.++.+||-+...+|..|..-...|+.|..+ +++|.|+.||--
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4555789999999999999999888888877643 567999999944
No 421
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=88.29 E-value=0.18 Score=46.73 Aligned_cols=134 Identities=16% Similarity=0.075 Sum_probs=78.6
Q ss_pred HHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccccc
Q 018973 131 DEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHE 210 (348)
Q Consensus 131 ~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~ 210 (348)
.+++-..+.-+|-+.||++||+-.+...|.++-...-++.+.... +++.........+|++...|++.+...--.. +
T Consensus 68 ~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~--vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~-~ 144 (319)
T KOG2640|consen 68 LDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA--VEESQALPSVFSSYGIHSEPSNLMLNQTCPA-S 144 (319)
T ss_pred HHhhccccCCcccccchhcccCcccccCcccchhhhhcccccccc--HHHHhhcccchhccccccCCcceeeccccch-h
Confidence 333333346789999999999999999999988888887533333 4454445678899999999998876432222 2
Q ss_pred ccc-CCCCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHH
Q 018973 211 EEG-IGPDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQ 281 (348)
Q Consensus 211 ~~G-~~~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~ 281 (348)
+-| .+.+.|++.-.... ...+.+ +++. -.+.....+|.+||++-.-..|...-+...
T Consensus 145 ~~~~r~l~sLv~fy~~i~---~~~v~i-------e~~d----~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 145 YRGERDLASLVNFYTEIT---PMSVLI-------EILD----CTSCLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred hcccccHHHHHHHHHhhc---cchhcc-------cccC----cccceeeeEeccccCcccccCcCCCcchhc
Confidence 222 22333332211110 000000 1111 122467788999998876666555444333
No 422
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=88.21 E-value=0.62 Score=41.89 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCCCceEecCHH--HHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC-cEEEEEeCCC
Q 018973 116 PRDERVKKVHSIE--EFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND-VEFILVMGDE 180 (348)
Q Consensus 116 ~~~~~v~~v~s~~--~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-v~f~~vd~d~ 180 (348)
.++..|+.+.... .+-+..+ +++|+|+.|.+--|+|-..-.+.+++++++|.+ +.|+.|-+.|
T Consensus 79 APns~vv~l~g~~~~~ildf~~--g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAK--GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred CCCCceEeeCCCcceeHHHhcc--CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 3445666663332 2333333 599999999999999999999999999999998 6899888766
No 423
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=88.18 E-value=2.4 Score=32.90 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=50.8
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+.+|.+.+++++.+. .++.+||-|+..--. .....+.++|+.+ .+..|+....+ ++...+++ .|++
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~~~i 68 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--GEGV 68 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--CCce
Confidence 467788999999886 566667666665433 3566778888888 45888766533 37788888 7888
Q ss_pred EEeec
Q 018973 200 SFYKS 204 (348)
Q Consensus 200 ~~~~~ 204 (348)
++|+.
T Consensus 69 vl~~p 73 (104)
T cd03069 69 VLFRP 73 (104)
T ss_pred EEEec
Confidence 88854
No 424
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.17 E-value=4.1 Score=39.55 Aligned_cols=96 Identities=21% Similarity=0.175 Sum_probs=59.5
Q ss_pred HHhhhcccCCcEEEEEEeCCCChhhhhhh-hHH-HHH-HHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEE-eC
Q 018973 244 KLIDDHKVDQKLIVLDVGLKHCGPCVKVY-PTV-IKL-SRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFI-RD 319 (348)
Q Consensus 244 ~~l~~~~~~~k~vvV~F~a~wC~~C~~~~-p~l-~~l-a~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~-~~ 319 (348)
+.+..++.++..+||++.+. -....++. -.| ... .+..-..+..++|+.... .+.++..-|-+..+|++.++ ..
T Consensus 10 eAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~-aa~qFs~IYp~v~vPs~ffIg~s 87 (506)
T KOG2507|consen 10 EAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSV-AATQFSAIYPYVSVPSIFFIGFS 87 (506)
T ss_pred HHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCch-hhhhhhhhcccccccceeeecCC
Confidence 33444433445555554444 44444443 112 121 122222355566665543 35678888999999987777 68
Q ss_pred CeEEEEEeCC-ChHHHHHHHHHH
Q 018973 320 GQIRGRYVGS-GKGELIGEILRY 341 (348)
Q Consensus 320 G~~v~~~~G~-~~~~L~~~l~~~ 341 (348)
|..+....|. ..++|...|++.
T Consensus 88 GtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 88 GTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred CceeEEeeccccHHHHHHHHHHH
Confidence 9999999999 999999988875
No 425
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.06 E-value=2 Score=30.57 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=36.4
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI 322 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~ 322 (348)
..|+.++|+.|++..-.+.+.. -.+.+..+|....+ .++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~--~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKP--AEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCC--HHHHHHCCCCCCCEEEE-CCCcE
Confidence 3567899999999865555432 12555666654322 23666667789999964 34554
No 426
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=87.80 E-value=3.1 Score=33.05 Aligned_cols=70 Identities=17% Similarity=0.358 Sum_probs=38.2
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD 319 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~ 319 (348)
+.+.+++++.... +.++|.=+-+. +.-+.....+.++..+.+.. ..+. -++. +.++|+|+.+||+++.++
T Consensus 11 ~~L~~l~~~a~~~-~~~~V~RG~~~-g~~~~t~~~~~~l~~~~~~~---~~v~--IdP~---~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERA-GVVVVFRGFPD-GSFKPTAKAIQELLRKDDPC---PGVQ--IDPR---LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhC-CcEEEEECCCC-CCHHHHHHHHHHHhhccCCC---ccee--EChh---HHhhCCceEcCEEEEEcC
Confidence 5566666665333 33333323222 23333333344444443221 2233 3455 899999999999999887
No 427
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=11 Score=36.20 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=105.7
Q ss_pred CCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccc-ccccCC--
Q 018973 139 NKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIH-EEEGIG-- 215 (348)
Q Consensus 139 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~-~~~G~~-- 215 (348)
..++.+.-........+.+...+++++...+.+.+-. +.+. ..-|.|.+-+.|+... +|.|..
T Consensus 18 ~~~i~l~asldds~~s~~~~~ll~eia~~S~kis~~~-~~~~-------------~RkpSF~i~r~g~~~gv~FAglPlG 83 (520)
T COG3634 18 EQPIELVASLDDSEKSKEIKELLDEIASLSDKISLEE-DSDL-------------VRKPSFSINRPGEDQGVRFAGLPLG 83 (520)
T ss_pred cCCeEEEEecCcccccHHHHHHHHHHHhhccceeeee-cCcc-------------ccCCceeecCCCcccceEEecCccc
Confidence 4566666777788888888888888887664443322 2111 3458888877775442 333421
Q ss_pred --CCcccccccccCCCccceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC
Q 018973 216 --PDQLMGDVLYYGDSHSAVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293 (348)
Q Consensus 216 --~~~l~~~v~~~~~~~~~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 293 (348)
...|+-.++..+..++.+ .+++-+.++.- ++...+=-|++-.|..|-.+...|+-++-- .+++.-..||.
T Consensus 84 HEftSlVLaLlqv~G~ppk~-----~q~vieqik~i--~g~~~FETy~SltC~nCPDVVQALN~msvl-Np~I~H~~IdG 155 (520)
T COG3634 84 HEFTSLVLALLQVGGHPPKE-----DQDVIEQIKAI--DGDFHFETYFSLTCHNCPDVVQALNLMSVL-NPRIKHTAIDG 155 (520)
T ss_pred chHHHHHHHHHHhcCCCCch-----hHHHHHHHHhc--CCceeEEEEEEeeccCChHHHHHHHHHHhc-CCCceeEEecc
Confidence 122222222222222211 12233333332 567777778888899998887777766544 45788899998
Q ss_pred CCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 018973 294 DENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILR 340 (348)
Q Consensus 294 ~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~ 340 (348)
.-..+ -.+.-+|-.+||+.+ ||+..+ .|. +.+++.+.|..
T Consensus 156 a~Fq~---Evear~IMaVPtvfl--nGe~fg--~GRmtleeilaki~~ 196 (520)
T COG3634 156 ALFQD---EVEARNIMAVPTVFL--NGEEFG--QGRMTLEEILAKIDT 196 (520)
T ss_pred hhhHh---HHHhccceecceEEE--cchhhc--ccceeHHHHHHHhcC
Confidence 76655 566678999999876 777544 355 76777666653
No 428
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=87.63 E-value=2 Score=30.58 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=35.1
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
+.|+.+||+.|++..-.+++..- ++.+..+|.... ..++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~--~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNK--PAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCC--CHHHHHHCCCCCCCEEEE
Confidence 45788999999998766555322 256666665432 235666667789999864
No 429
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=87.62 E-value=3.1 Score=30.17 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=33.5
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEE
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~ 201 (348)
..|+.++|+.|++..-.|++. ++.|-.++++..+ ...++.+..+-..+|+++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 467778999999987666653 4444445554432 1234554456678999864
No 430
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.17 E-value=1.3 Score=35.01 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=33.6
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEE
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~ 201 (348)
..|+.++|+.|++....|++ .++.|-.+|+.+.+ ...++.+-.+-.+.|.--+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l 55 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKF 55 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCCcccHHHHHHHHHHcCCCHHHH
Confidence 46889999999999988877 46777777766532 1233333333344454333
No 431
>PRK09301 circadian clock protein KaiB; Provisional
Probab=86.53 E-value=1.9 Score=33.60 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=55.6
Q ss_pred CCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973 138 KNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-ND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G 213 (348)
++..++=.|.|..-+..+..-..+.++-+++ ++ +.+-.||+.+ .+++++.++|-++||++-.. -.++.++.|
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~---qPelAE~~~IvATPTLIK~~-P~P~rriiG 77 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK---NPQLAEEDKILATPTLAKIL-PPPVRKIIG 77 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCeEEecHHhhcC-CCCcceeec
Confidence 4577888899999999998888888887765 34 7888888888 55699999999999965322 345555555
No 432
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=86.34 E-value=1.2 Score=34.71 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=25.3
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~ 180 (348)
+..|+.++|+.|++....|++ .++.|-.+|+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE-----HGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH-----cCCCcEEEeecc
Confidence 357889999999999888877 356666777654
No 433
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.27 E-value=3.5 Score=33.70 Aligned_cols=89 Identities=13% Similarity=0.270 Sum_probs=48.9
Q ss_pred hhHHHHhhhcccCCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeC
Q 018973 240 EDVEKLIDDHKVDQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRD 319 (348)
Q Consensus 240 ~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~ 319 (348)
+.+.+++.+....+.++++. +-.. +.-+.....+.++...-. . ..+. -++. +.++|+|+.+|++++.++
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlR-G~~~-~~~~~T~~~i~~L~~~~~-~---~~v~--IdP~---lF~~f~I~~VPa~V~~~~ 80 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIR-GLLD-NGFKATATRIQSLIKDGG-K---SGVQ--IDPQ---WFKQFDITAVPAFVVVKD 80 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEe-CCCC-CCHHHHHHHHHHHHhcCC-C---CcEE--EChH---HHhhcCceEcCEEEEECC
Confidence 45566665554334443332 2222 122333333444433321 1 2222 3455 999999999999999988
Q ss_pred Ce-----------EEEEEeCC-ChHHHHHHHH
Q 018973 320 GQ-----------IRGRYVGS-GKGELIGEIL 339 (348)
Q Consensus 320 G~-----------~v~~~~G~-~~~~L~~~l~ 339 (348)
+. ...+..|- +.+.-.+.+.
T Consensus 81 ~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 81 GLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred CCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 74 34566777 6555555555
No 434
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=1.4 Score=32.13 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=37.7
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHH------------HHHhCCCCccceEEEEeCCeEE
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQ------------FLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~------------l~~~~~V~~~PTl~~~~~G~~v 323 (348)
+.|++..||.|..+...|.++ .+.+-.|++.+.- +.++ -.+.+|--++|.+++ .+|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 679999999999887666654 2555566655432 1111 233466678999876 456554
No 435
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=86.17 E-value=3.1 Score=30.26 Aligned_cols=58 Identities=7% Similarity=0.123 Sum_probs=44.2
Q ss_pred EEEEEeCCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCccceEEE
Q 018973 256 IVLDVGLKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 256 vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~ 316 (348)
.+..|-+..-+..+.....+.++-+++ ++.+.+-.||+.++++ +++.++|-.+||++-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~---lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ---LAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh---HHhhCCEEEechhhh
Confidence 344555555566777766677766665 5668899999999998 999999999999763
No 436
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=85.64 E-value=0.51 Score=37.37 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=43.0
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceEEEE-eCCeEEE------EE
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTFLFI-RDGQIRG------RY 326 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl~~~-~~G~~v~------~~ 326 (348)
..|+.++|+.|++....|++ .++.|-.+|+.+.+ ++.++..+.+ .|.--++ +.|.... ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~~~~~~~---~~~~~l~~~~~~~~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEPPSKEELKKWLEKSG---LPLKKFFNTSGKSYRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCcccHHHHHHHHHHcC---CCHHHHHhcCCchHHhCCccccc
Confidence 46889999999998666654 23667777776544 3334555544 4533222 3443221 11
Q ss_pred eCCChHHHHHHHHHH
Q 018973 327 VGSGKGELIGEILRY 341 (348)
Q Consensus 327 ~G~~~~~L~~~l~~~ 341 (348)
.+.+.+++.+.|.++
T Consensus 73 ~~~s~~e~~~~l~~~ 87 (111)
T cd03036 73 PSLSEEEALELLSSD 87 (111)
T ss_pred ccCCHHHHHHHHHhC
Confidence 233567777777664
No 437
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=85.56 E-value=3.1 Score=35.65 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=33.0
Q ss_pred CCcEEEEEEeCCCChh-hhhhhhHHHHHHHHhC---CcEEEEEEECCC
Q 018973 252 DQKLIVLDVGLKHCGP-CVKVYPTVIKLSRQMA---GTVVFARMNGDE 295 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~-C~~~~p~l~~la~~~~---~~v~~~~vd~~~ 295 (348)
.+++++|+|.-+.|+. |-.+...+.++.+.++ .++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 5899999999999964 8888777777766653 358888887763
No 438
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=85.48 E-value=2.4 Score=31.98 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=52.8
Q ss_pred CEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CC-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeecccccccccc
Q 018973 140 KLVVVEFAASRSLDSSKIYPFMVDLSRQC-ND-VEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKIHEEEG 213 (348)
Q Consensus 140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v~~~~G 213 (348)
..++=.|.|..-+..+..-..+.++.+++ .+ +.+-.||+.+ .+++++.++|-++||++-.. -.+..++.|
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~---qP~lAE~~~IvATPtLIK~~-P~P~rriiG 74 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK---NPQLAEEDKILATPTLSKIL-PPPVRKIIG 74 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCEEEecHHhhcC-CCCcceeec
Confidence 56777788888888888888888887765 44 7888888888 55699999999999965322 344455555
No 439
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=7 Score=33.15 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=25.3
Q ss_pred ceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 312 PTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 312 PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
=-|++.++|+++.|+... ++.++...|+++++
T Consensus 138 ~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 138 TKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred EEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 357888999999999887 77777777777664
No 440
>PHA03075 glutaredoxin-like protein; Provisional
Probab=85.40 E-value=1.2 Score=35.35 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=28.8
Q ss_pred cEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEEC
Q 018973 254 KLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNG 293 (348)
Q Consensus 254 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 293 (348)
|.+++.|+.|.|+-|+.....++++.++| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 46789999999999999998898887665 3455554
No 441
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=85.34 E-value=1.2 Score=34.95 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=42.2
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceEEEEeCCeEEEEE-----eC
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTFLFIRDGQIRGRY-----VG 328 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl~~~~~G~~v~~~-----~G 328 (348)
..|+.++|+.|++....|.+ . ++.|-.+|+.+.+ ++.++.+++|+ .-++-++|...... ..
T Consensus 2 ~iy~~~~C~~crka~~~L~~----~--~i~~~~~di~~~p~s~~eL~~~l~~~g~----~~li~~~~~~yk~l~l~~~~~ 71 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA----R--GVAYTFHDYRKDGLDAATLERWLAKVGW----ETLLNKRGTTWRKLDDAQKAA 71 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH----c--CCCeEEEecccCCCCHHHHHHHHHHhCh----HHHHccCchHHHhCChhhhcc
Confidence 56889999999998665554 2 3556666665443 45567777663 22222344322111 11
Q ss_pred CChHHHHHHHHHH
Q 018973 329 SGKGELIGEILRY 341 (348)
Q Consensus 329 ~~~~~L~~~l~~~ 341 (348)
.+.+++.+.|.++
T Consensus 72 ~s~~e~~~~l~~~ 84 (105)
T cd03035 72 LDAAKAIALMLEH 84 (105)
T ss_pred CCHHHHHHHHHhC
Confidence 2556677777654
No 442
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=85.11 E-value=1.8 Score=37.20 Aligned_cols=38 Identities=16% Similarity=-0.043 Sum_probs=30.2
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCc--EEEEEeCCC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDV--EFILVMGDE 180 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v--~f~~vd~d~ 180 (348)
|..|+-.-|+.|-...+.|.++.++++++ .+.-+....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 67888899999999999999999999764 444444433
No 443
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=84.35 E-value=1.9 Score=36.97 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHc----CCcEEEEEeCCCchhHHHHHHH
Q 018973 138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQC----NDVEFILVMGDESEKTKELCER 190 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~----~~v~f~~vd~d~~~~~~~l~~~ 190 (348)
++|+++|.|.=+.|+ .|-.+...|.++.++. .++.++.|.+|-..+.++..++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~ 108 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKK 108 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHH
Confidence 689999999999996 7987777776665543 3477777777743223344444
No 444
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.07 E-value=2.5 Score=34.47 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=26.2
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES 181 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~ 181 (348)
+..|+.++|+.|++....|++ .++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-----~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-----HDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCcEEeeccCC
Confidence 457889999999998877776 3667777776553
No 445
>PRK12559 transcriptional regulator Spx; Provisional
Probab=83.05 E-value=2.9 Score=34.18 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=24.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~ 180 (348)
+..|+.++|+.|++....|++ .++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-----NQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCeEEEEeeC
Confidence 467889999999998877776 356666666554
No 446
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=82.60 E-value=5.1 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=30.3
Q ss_pred EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeE
Q 018973 259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQI 322 (348)
Q Consensus 259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~ 322 (348)
.++.++|+.|++..-.|....- .+..+.++..+... ..+..+-..+|++.. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~---~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT---PIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH---HHHhcCCCccCEEEe-CCCeE
Confidence 4667899999998655554311 13333344332222 334445567898853 33543
No 447
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=82.56 E-value=3.4 Score=34.60 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=46.2
Q ss_pred HHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCC--cEEEEEeCCC--------chhHHHHHH-HcCcCCCCeEE
Q 018973 134 LRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCND--VEFILVMGDE--------SEKTKELCE-REKIKKVPHFS 200 (348)
Q Consensus 134 l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--v~f~~vd~d~--------~~~~~~l~~-~~~V~~~Pt~~ 200 (348)
|.+.++++++|.=.|+-||--.+ ...|+.|.++|.+ +.++..-|++ .++..++|+ .|||+ +|.+-
T Consensus 20 l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt-Fp~f~ 95 (162)
T COG0386 20 LSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT-FPMFS 95 (162)
T ss_pred HHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCce-eeeee
Confidence 44558999999999999996553 4467778888875 7777777764 234566774 67776 55554
No 448
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=81.47 E-value=1.8 Score=33.59 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=42.6
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceE-EEEeCCeEEEE-----Ee
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTF-LFIRDGQIRGR-----YV 327 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl-~~~~~G~~v~~-----~~ 327 (348)
..|+.++|+.|++....|.+. ++.|-.+|+.+.+ +..++..+.+ .+.- ++-++|..... ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~---~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLG---LGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcC---CCHHHHHhcCCchHHHcCCcccc
Confidence 468899999999986666552 3666777775533 3333444443 3222 22233322211 12
Q ss_pred CCChHHHHHHHHHH
Q 018973 328 GSGKGELIGEILRY 341 (348)
Q Consensus 328 G~~~~~L~~~l~~~ 341 (348)
+.+.+++.+.|.++
T Consensus 73 ~ls~~e~~~~l~~~ 86 (105)
T cd02977 73 ELSDEEALELMAEH 86 (105)
T ss_pred CCCHHHHHHHHHhC
Confidence 33788888888765
No 449
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=81.03 E-value=14 Score=28.82 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=50.1
Q ss_pred ceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHc-CCcEEEEEeCCCchhHHHHHHHcCcCCCCeE
Q 018973 121 VKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQC-NDVEFILVMGDESEKTKELCEREKIKKVPHF 199 (348)
Q Consensus 121 v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~ 199 (348)
+..|.+.+++++.+.+ .++.+||-|+..--+ .....+.++|..+ .+..|+....+ ++.+++++. .|.+
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~-~~~v 70 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVS-PGQL 70 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCC-CCce
Confidence 5788899999998863 225666666655433 3556778888888 45888666533 377788876 5667
Q ss_pred EEeecc
Q 018973 200 SFYKSM 205 (348)
Q Consensus 200 ~~~~~g 205 (348)
++|+..
T Consensus 71 vl~rp~ 76 (107)
T cd03068 71 VVFQPE 76 (107)
T ss_pred EEECcH
Confidence 777543
No 450
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=80.96 E-value=5.9 Score=29.91 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=51.3
Q ss_pred EEEEEEeCCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC
Q 018973 255 LIVLDVGLKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS 329 (348)
Q Consensus 255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~ 329 (348)
.++=.|.+..-+..+.....+.++-+++ .+.+.+--||+.++++ +++.++|-.+||++-.-- ..+.++.|-
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~---lAE~~~IvATPtLIK~~P-~P~rriiGd 75 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ---LAEEDKILATPTLSKILP-PPVRKIIGD 75 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh---HHhHCCEEEecHHhhcCC-CCcceeecc
Confidence 4444556666677777777777775544 5668888999999998 999999999999764322 344566675
No 451
>PHA03075 glutaredoxin-like protein; Provisional
Probab=80.66 E-value=2.8 Score=33.26 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=30.2
Q ss_pred CEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeC
Q 018973 140 KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMG 178 (348)
Q Consensus 140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~ 178 (348)
|.+++.|.-|-|+-|+.....+.+|..+| .++.||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence 56899999999999999999998888887 4555553
No 452
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=80.56 E-value=30 Score=28.21 Aligned_cols=104 Identities=13% Similarity=0.246 Sum_probs=57.2
Q ss_pred ceeecCChhhHHHHhhhcccCCcEEEEEEeCCCChhhh--hhhhHHHHHHHH-hCCcEEEEEEECCCchhHHHHHHhCCC
Q 018973 232 AVVQLHSKEDVEKLIDDHKVDQKLIVLDVGLKHCGPCV--KVYPTVIKLSRQ-MAGTVVFARMNGDENDSCMQFLRDMNV 308 (348)
Q Consensus 232 ~v~~~~s~~~~~~~l~~~~~~~k~vvV~F~a~wC~~C~--~~~p~l~~la~~-~~~~v~~~~vd~~~~~~~~~l~~~~~V 308 (348)
...++.+.++.++.+.+. +...+| +-.+-|+ |. ..+|........ .++ =.++.|=.....+..+-++.|=.
T Consensus 17 Gf~eL~T~e~Vd~~~~~~---~GTtlV-vVNSVCG-CAag~ARPa~~~al~~~kkP-D~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNK---EGTTLV-VVNSVCG-CAAGNARPAAAMALQNDKKP-DHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp T-EE--SHHHHHHHHHH-----SEEEE-EEE-SSH-HHHHTHHHHHHHHHHHSS---SEEEEEETTTSHHHHHHHHHTST
T ss_pred CccccCCHHHHHHHHhCC---CCcEEE-EEecccc-ccccccCHHHHHHHhCCCCC-CceEEeccCCCHHHHHHHHHhcC
Confidence 355677899999999853 343443 3456677 43 345555443332 111 24555655555554445555422
Q ss_pred ---CccceEEEEeCCeEEEEE-----eCCChHHHHHHHHHH
Q 018973 309 ---VEVPTFLFIRDGQIRGRY-----VGSGKGELIGEILRY 341 (348)
Q Consensus 309 ---~~~PTl~~~~~G~~v~~~-----~G~~~~~L~~~l~~~ 341 (348)
.+-|++.+||||++++.+ +|.+.+.+.+-|...
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 345789999999999765 466777766666554
No 453
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=79.93 E-value=5.9 Score=31.45 Aligned_cols=71 Identities=23% Similarity=0.155 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeec
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKS 204 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 204 (348)
.+.+++++.++.+.-+.+.|-.---+.=+.....+.+|..+.+.. ..|.+|- .+-++|+|+.+||+++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~--~~v~IdP-----~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPC--PGVQIDP-----RLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCC--cceeECh-----hHHhhCCceEcCEEEEEcC
Confidence 456667666655433444443322223333344444444444333 3333333 4899999999999999877
No 454
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=79.60 E-value=4.3 Score=27.62 Aligned_cols=53 Identities=19% Similarity=0.128 Sum_probs=33.8
Q ss_pred EEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 145 EFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 145 ~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
.|+.++|+.|++..-.++...-. +....++.++.... ++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQE-EFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE
Confidence 57789999999888777665322 34455554432221 3555667788998765
No 455
>PRK09301 circadian clock protein KaiB; Provisional
Probab=79.50 E-value=6.7 Score=30.57 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=56.2
Q ss_pred CcEEEEEEeCCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--
Q 018973 253 QKLIVLDVGLKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-- 329 (348)
Q Consensus 253 ~k~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-- 329 (348)
+..++=.|.+..-+..+.....+.++-+++ .+.+.+-.||+.+++. +++.++|-.+||++-.- =..+.++.|-
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe---lAE~~~IvATPTLIK~~-P~P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ---LAEEDKILATPTLAKIL-PPPVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh---HHhHCCeEEecHHhhcC-CCCcceeecccc
Confidence 345555666776777777777777775544 5668888999999998 99999999999976432 2345667776
Q ss_pred ChHHHH
Q 018973 330 GKGELI 335 (348)
Q Consensus 330 ~~~~L~ 335 (348)
+.+.+.
T Consensus 81 d~~kVL 86 (103)
T PRK09301 81 DREKVL 86 (103)
T ss_pred cHHHHH
Confidence 555443
No 456
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.23 E-value=3.7 Score=36.77 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=31.9
Q ss_pred HHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhCC
Q 018973 301 QFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQGV 344 (348)
Q Consensus 301 ~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~~ 344 (348)
..++++||+++|||++ +|+ ..+.|. +.+.|...|.+.++.
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhc
Confidence 3677899999999999 443 345788 899999999888654
No 457
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=79.10 E-value=14 Score=29.85 Aligned_cols=52 Identities=27% Similarity=0.265 Sum_probs=35.2
Q ss_pred cEEEEEEECCCch-------hHHHHHHhCCCCccceEEEEeCCeEEEEEeCC--ChHHHHHHHHH
Q 018973 285 TVVFARMNGDEND-------SCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS--GKGELIGEILR 340 (348)
Q Consensus 285 ~v~~~~vd~~~~~-------~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~--~~~~L~~~l~~ 340 (348)
.+.+.+.|..+++ .+.++.++-|...+|-+++ ||+++.. |. +.++|.+|+.-
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~--G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKT--GRYPTNEELAEWLGI 100 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEE--SS---HHHHHHHHT-
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEe--cCCCCHHHHHHHhCC
Confidence 4899999998654 3556777789999996655 9998764 54 88888888753
No 458
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=78.74 E-value=5 Score=31.88 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=26.5
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES 181 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~ 181 (348)
..|+.++|+.|++....|++ .++.|-.+|..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCC
Confidence 46889999999999988887 4677778887653
No 459
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.65 E-value=7.2 Score=27.44 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=31.9
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEE
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFS 200 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 200 (348)
..|+.++|+.|++..-.++...-+ .....+|.+.. ..++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~--~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNP--PEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCC--CHHHHhhCCCCCCCEEE
Confidence 467889999999987666553222 34444554332 23455555667899774
No 460
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=78.65 E-value=4.5 Score=36.82 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=28.4
Q ss_pred CCCEEEEEEeCCCCH-HHHhhhhHHH----HHHHHcCC---cEEEEEeCC
Q 018973 138 KNKLVVVEFAASRSL-DSSKIYPFMV----DLSRQCND---VEFILVMGD 179 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~-~C~~~~p~l~----~la~~~~~---v~f~~vd~d 179 (348)
.++-++++|.=+.|+ -|-.....|. ++.++... -.|+.||-.
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 689999999999999 4755444443 34333332 278888854
No 461
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.64 E-value=20 Score=25.09 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=39.0
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCCChHHHHHH
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGSGKGELIGE 337 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~~~~~L~~~ 337 (348)
..|+.++|+.|++..-.+....- .+....+|..... .++.+......+|++. .+|..+. ....+.++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~--~~~~~~~p~~~vP~l~--~~~~~l~-----es~aI~~y 68 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPP--EDLAELNPYGTVPTLV--DRDLVLY-----ESRIIMEY 68 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCC--HHHHhhCCCCCCCEEE--ECCEEEE-----cHHHHHHH
Confidence 35678999999998655544321 2344445544322 2355656667899774 3443221 33455555
Q ss_pred HHH
Q 018973 338 ILR 340 (348)
Q Consensus 338 l~~ 340 (348)
|.+
T Consensus 69 L~~ 71 (73)
T cd03059 69 LDE 71 (73)
T ss_pred HHh
Confidence 543
No 462
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=78.15 E-value=5.7 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=38.4
Q ss_pred HhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcC--CcEEEEEeCCC
Q 018973 135 RLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCN--DVEFILVMGDE 180 (348)
Q Consensus 135 ~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~v~f~~vd~d~ 180 (348)
++.++++++|.=.|+-|+--. -...|++|.++|. ++.++..-|++
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 455799999999999999888 6779999999997 48888888875
No 463
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.69 E-value=6.7 Score=31.07 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=25.3
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDE 180 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~ 180 (348)
+..|+.++|+.|++....|++ .++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-----~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-----HQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCceEEEecCC
Confidence 346788999999999888877 356667777654
No 464
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=76.90 E-value=9.5 Score=33.74 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=46.7
Q ss_pred CCCEEEEEEeCCCCH-HHHhhhhHHHHHHHHcC-----CcEEEEEeCCCchhHHHHHHHcCc-CCCCeEEEee
Q 018973 138 KNKLVVVEFAASRSL-DSSKIYPFMVDLSRQCN-----DVEFILVMGDESEKTKELCEREKI-KKVPHFSFYK 203 (348)
Q Consensus 138 ~~k~vvV~F~a~wC~-~C~~~~p~l~~la~~~~-----~v~f~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~ 203 (348)
++++++|.|.=+.|+ -|-.+...|.++.++.. ++.++-|-+|-..+.++..++|.. ...|-+....
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~lt 138 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLT 138 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeee
Confidence 699999999989998 69888877777666543 354555555543346788899988 6666666554
No 465
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=76.73 E-value=4.6 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=24.5
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND 297 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 297 (348)
+..|+.++|+.|++....|.+ . ++.|-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~----~--gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE----H--DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH----c--CCCcEEeeccCCh
Confidence 457889999999998655544 2 3666777765543
No 466
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=75.72 E-value=18 Score=24.30 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=34.9
Q ss_pred EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEE
Q 018973 259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIR 323 (348)
Q Consensus 259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v 323 (348)
.|+.++|+.|.+..-.+.... -.+....++....... ++.+......+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQE-EFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE--CCEEE
Confidence 567788999998766555432 1244455554433321 2555667788998875 45543
No 467
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.63 E-value=6.9 Score=40.46 Aligned_cols=81 Identities=10% Similarity=0.020 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHH---HHHHHHc-CCcEEEEEeCCCchhHHH----HHHHcC-cCCC
Q 018973 126 SIEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFM---VDLSRQC-NDVEFILVMGDESEKTKE----LCEREK-IKKV 196 (348)
Q Consensus 126 s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l---~~la~~~-~~v~f~~vd~d~~~~~~~----l~~~~~-V~~~ 196 (348)
+.+.|..+-+ .+||++|-...+||-=|..|...= .++|+-. .+++-+|||-++-|+... +|+-.. =-+-
T Consensus 32 ~~eAf~~A~~--edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 32 GEEAFAKAKE--EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred CHHHHHHHHH--hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 5788888766 699999999999999999886321 2333333 237889999888554221 222222 3367
Q ss_pred CeEE-Eeeccccc
Q 018973 197 PHFS-FYKSMEKI 208 (348)
Q Consensus 197 Pt~~-~~~~g~~v 208 (348)
|--+ +-.+|+++
T Consensus 110 PLtVfLTPd~kPF 122 (667)
T COG1331 110 PLTVFLTPDGKPF 122 (667)
T ss_pred ceeEEECCCCcee
Confidence 8644 44577765
No 468
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=75.40 E-value=6.4 Score=27.62 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=34.5
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEE
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~ 201 (348)
..|+.++|+.|+++.-.+....-. .....++..+.+ ...++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999988777664222 344556543211 1234555566678999865
No 469
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=74.11 E-value=19 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=33.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFY 202 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 202 (348)
+..|+.+.|+.|++..-.|.. .++.|-.++++... ..++ +.-+-..+|++..-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~-----~gi~y~~~~~~~~~-~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY-----HGIPYEVVEVNPVS-RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH-----CCCceEEEECCchh-HHHH-HHhCCCccCEEEEC
Confidence 446778999999998866655 34444444544321 2234 34566789998754
No 470
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.95 E-value=5.9 Score=34.60 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHhCCCCccceEEEEeCCeEEEEEeC--C-ChHHHHHHHHHHh
Q 018973 300 MQFLRDMNVVEVPTFLFIRDGQIRGRYVG--S-GKGELIGEILRYQ 342 (348)
Q Consensus 300 ~~l~~~~~V~~~PTl~~~~~G~~v~~~~G--~-~~~~L~~~l~~~~ 342 (348)
.-+++++++.++||+++.++|+...--.| . +.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 34888999999999999999987655556 3 6788888887764
No 471
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=73.70 E-value=10 Score=30.92 Aligned_cols=45 Identities=4% Similarity=0.077 Sum_probs=30.2
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch----hHHHHHHHcC
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE----KTKELCEREK 192 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~----~~~~l~~~~~ 192 (348)
+..|+.++|+.|++....|++ .++.|-.+|+.+.+ +..++.++.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~i~~~~~d~~~~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQLSYKEQNLGKEPLTKEEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEECCCCCCCHHHHHHHHHHhC
Confidence 456788999999998877776 46777777765432 3344554443
No 472
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=73.20 E-value=12 Score=34.09 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=37.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEe
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIR 318 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~ 318 (348)
++|+.++++.+.||+.|...+=.|--...+|+ ++.+.....+- .+ .-..+||++|..
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~S~~-~d--------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSLEYHYSDP-YD--------NYPNTPTLIFNN 113 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC-CeeeEEeecCc-cc--------CCCCCCeEEEec
Confidence 58999999999999999988755555556664 45333332222 11 125688887763
No 473
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=72.75 E-value=11 Score=30.97 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=36.2
Q ss_pred CEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973 140 KLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 140 k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
..-++.|+.|.||=|..-..+|+. .++++-.+..|+ ...+-+++||.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d---~~alK~~~gIp 71 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDD---FLALKRRLGIP 71 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCc---HHHHHHhcCCC
Confidence 345788999999999987777763 567777777777 55577888886
No 474
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=71.57 E-value=10 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHcCcCCCCeEEEeeccc
Q 018973 186 ELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 186 ~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
.+-++|+|+.+|+|++.+++.
T Consensus 62 ~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 62 QWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHhhcCceEcCEEEEECCCC
Confidence 489999999999999998774
No 475
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=71.01 E-value=7.5 Score=30.84 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=42.2
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCCCccceEEEEeCCeEEEEE------e
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNVVEVPTFLFIRDGQIRGRY------V 327 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V~~~PTl~~~~~G~~v~~~------~ 327 (348)
..|+.++|+.|++....|.+ .++.|-.+|+.+.+ +..++.+.++. -+.-++-++|...... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~l~~~~~~--~~~~lin~~~~~~k~l~~~~~~~ 73 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDGPTREELLDILSLLED--GIDPLLNTRGQSYRALNTSNTFL 73 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCChhhHHHHHHHHHHcCC--CHHHheeCCCcchhhCCchhhcc
Confidence 36789999999998766655 24667777776644 23345555542 1122333444332211 1
Q ss_pred CCChHHHHHHHHHH
Q 018973 328 GSGKGELIGEILRY 341 (348)
Q Consensus 328 G~~~~~L~~~l~~~ 341 (348)
..+.+++.+.|.++
T Consensus 74 ~ls~~e~~~~i~~~ 87 (117)
T TIGR01617 74 DLSDKEALELLAED 87 (117)
T ss_pred cCCHHHHHHHHHhC
Confidence 22556666666653
No 476
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=70.49 E-value=12 Score=36.42 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHhc-CCCEEEEEEeCCCCHHHHhhh--hHHHHHHHHc--CCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEe-ec
Q 018973 131 DEALRLA-KNKLVVVEFAASRSLDSSKIY--PFMVDLSRQC--NDVEFILVMGDESEKTKELCEREKIKKVPHFSFY-KS 204 (348)
Q Consensus 131 ~~~l~~~-~~k~vvV~F~a~wC~~C~~~~--p~l~~la~~~--~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~-~~ 204 (348)
.+++..+ +++.|+|.|-+.......++. -..+....+. ..++-++|+..... ..++..-|-+..+|++.|+ .+
T Consensus 9 peAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-a~qFs~IYp~v~vPs~ffIg~s 87 (506)
T KOG2507|consen 9 PEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-ATQFSAIYPYVSVPSIFFIGFS 87 (506)
T ss_pred HHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-hhhhhhhcccccccceeeecCC
Confidence 3444433 367888888888888888777 4444443332 33777888877644 4678889999999997666 67
Q ss_pred cccccccccC-CCCcccc
Q 018973 205 MEKIHEEEGI-GPDQLMG 221 (348)
Q Consensus 205 g~~v~~~~G~-~~~~l~~ 221 (348)
|.++....|. ..++|..
T Consensus 88 GtpLevitg~v~adeL~~ 105 (506)
T KOG2507|consen 88 GTPLEVITGFVTADELAS 105 (506)
T ss_pred CceeEEeeccccHHHHHH
Confidence 9888877773 2444443
No 477
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=70.24 E-value=10 Score=26.81 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=34.6
Q ss_pred EEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCch-hHHHHHHHcCcCCCCeEEE
Q 018973 144 VEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESE-KTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 144 V~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~ 201 (348)
..|+.++|+.|++..-.++...-+ +....+|..+.+ ...++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 467889999999877666654222 455566643321 1245666666678999963
No 478
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=69.28 E-value=26 Score=28.88 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=47.9
Q ss_pred EEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCC----ccceEEEEeCCeEEEEEeCC-
Q 018973 255 LIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVV----EVPTFLFIRDGQIRGRYVGS- 329 (348)
Q Consensus 255 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~----~~PTl~~~~~G~~v~~~~G~- 329 (348)
.-++.++.|.|+=|..-...++ . ..+.+-.+..++... +-++++|. +-=|.++ +|..+ +|-
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk----~--~Gf~Vk~~~~~d~~a---lK~~~gIp~e~~SCHT~VI--~Gy~v---EGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK----A--NGFEVKVVETDDFLA---LKRRLGIPYEMQSCHTAVI--NGYYV---EGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH----h--CCcEEEEeecCcHHH---HHHhcCCChhhccccEEEE--cCEEE---eccC
Confidence 4467789999999988644444 2 236666666666665 77788875 2335554 77654 465
Q ss_pred ChHHHHHHHHHH
Q 018973 330 GKGELIGEILRY 341 (348)
Q Consensus 330 ~~~~L~~~l~~~ 341 (348)
..+.+..++.+-
T Consensus 92 Pa~aI~~ll~~~ 103 (149)
T COG3019 92 PAEAIARLLAEK 103 (149)
T ss_pred CHHHHHHHHhCC
Confidence 677777777653
No 479
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.15 E-value=11 Score=29.90 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=28.3
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhC
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDM 306 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~ 306 (348)
+..|+.++|+.|++....|++ . ++.|-.+|+.+.+ +..++++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~----~--gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE----H--QIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----C--CCceEEEecCCCcchHHHHHHHHHHh
Confidence 446788999999998666654 2 3566666765443 344455554
No 480
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=68.45 E-value=1.8 Score=32.37 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=41.6
Q ss_pred EeCCCCHHHHhhhhHHHHHHHHcC-C-cEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 146 FAASRSLDSSKIYPFMVDLSRQCN-D-VEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 146 F~a~wC~~C~~~~p~l~~la~~~~-~-v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
|-+..-+..++....+..+.+++- + +.+-.||+.+. +++++.++|-++||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~---P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ---PELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS---HSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC---HhHHhHCCeeecceEee
Confidence 445555667788888888888753 3 88999999994 45999999999999763
No 481
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=68.15 E-value=13 Score=30.40 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=23.2
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN 296 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~ 296 (348)
+..|+.++|+.|++....|.+ . ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~----~--~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA----H--QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----c--CCCeEEEECCCC
Confidence 456788999999998655543 2 366666676543
No 482
>PRK12559 transcriptional regulator Spx; Provisional
Probab=67.38 E-value=9.3 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=23.0
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCc
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEN 296 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~ 296 (348)
+..|+.++|+.|++....|.+ . ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~----~--gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE----N--QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH----c--CCCeEEEEeeCC
Confidence 567889999999998655554 2 355555565443
No 483
>COG2209 NqrE Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]
Probab=67.28 E-value=3.6 Score=34.38 Aligned_cols=24 Identities=33% Similarity=0.629 Sum_probs=19.5
Q ss_pred ccccccchhHHHHHhhhHHHHhhh
Q 018973 34 ISGAWSGCGWILALHSMAVVTNFI 57 (348)
Q Consensus 34 ~~~~~~~~~~~~~~~~ma~~~~~l 57 (348)
+-|.=+||||+|+.-.+|.+..-+
T Consensus 141 vyg~GsG~gW~LAIvalAgirEKm 164 (198)
T COG2209 141 VYGFGSGLGWMLAIVALAGIREKM 164 (198)
T ss_pred heecCCchHHHHHHHHHHhHHHHh
Confidence 457779999999999999886433
No 484
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.15 E-value=9.6 Score=32.90 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=26.4
Q ss_pred HHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 018973 301 QFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEI 338 (348)
Q Consensus 301 ~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l 338 (348)
+.+.+.||.++||+++ +|+. .+.|. +.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 4677899999999998 6653 35788 888887765
No 485
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=66.68 E-value=11 Score=26.30 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=33.0
Q ss_pred EEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccceEEE
Q 018973 259 DVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 259 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~PTl~~ 316 (348)
.|+.++|+.|++..-.+....- .+....++..+.+ ...++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 5778899999998766655422 2344555543211 1123666666778999975
No 486
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=66.13 E-value=12 Score=26.26 Aligned_cols=51 Identities=8% Similarity=-0.038 Sum_probs=28.8
Q ss_pred EEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 145 EFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 145 ~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
.|+.++|+.|+++.-.|.. .++.|-.+.++..+ .....+..+-..+|++..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~-----~gl~~~~~~~~~~~-~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL-----KNIPVEQIILQNDD-EATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHH-----cCCCeEEEECCCCc-hHHHHHhcCCCccCEEEe
Confidence 5677999999987766655 34433333333221 112223444567898754
No 487
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=64.77 E-value=18 Score=25.77 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=36.6
Q ss_pred EeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccccc
Q 018973 146 FAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSMEKI 208 (348)
Q Consensus 146 F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~~v 208 (348)
|+.++|+.|+++.=.++...- .+.+..++..+. ..++.+...-..+|++. .+|..+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~--~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEK--RPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTST--SHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccc--hhHHHhhcccccceEEE--ECCEEE
Confidence 678999999997655444221 256666665543 34567777788999997 345544
No 488
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=63.78 E-value=81 Score=27.57 Aligned_cols=87 Identities=23% Similarity=0.215 Sum_probs=0.0
Q ss_pred CcEEEEEEe-CCCChhhhhhhhHHHHHHHHhCCc-EEEEEEECC----------------------------CchhHHHH
Q 018973 253 QKLIVLDVG-LKHCGPCVKVYPTVIKLSRQMAGT-VVFARMNGD----------------------------ENDSCMQF 302 (348)
Q Consensus 253 ~k~vvV~F~-a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~----------------------------~~~~~~~l 302 (348)
++.++++|| ++--+-|-.....+.+...++++. +.++.+.+| ...+ +
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~---v 109 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGE---I 109 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchh---H
Q ss_pred HHhCCCCccc-------eEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 018973 303 LRDMNVVEVP-------TFLFIRDGQIRGRYV-----GSGKGELIGEILRYQ 342 (348)
Q Consensus 303 ~~~~~V~~~P-------Tl~~~~~G~~v~~~~-----G~~~~~L~~~l~~~~ 342 (348)
++.||+-.-. +|++..+|.+..... |.+.+++.+.++.+.
T Consensus 110 s~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 110 ARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
No 489
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.08 E-value=30 Score=33.27 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCEEEEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEEeeccc
Q 018973 127 IEEFDEALRLAKNKLVVVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSFYKSME 206 (348)
Q Consensus 127 ~~~f~~~l~~~~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~g~ 206 (348)
.+++-+.++.-.+.+-+=-|++-.|..|-..-+.|.-++--.+++.-..||..- ..+-.+.-+|.++||+.+ ||+
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~---Fq~Evear~IMaVPtvfl--nGe 178 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGAL---FQDEVEARNIMAVPTVFL--NGE 178 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchh---hHhHHHhccceecceEEE--cch
Confidence 344445555556788888899999999999999999888888999999999776 344566779999999755 555
Q ss_pred cc
Q 018973 207 KI 208 (348)
Q Consensus 207 ~v 208 (348)
..
T Consensus 179 ~f 180 (520)
T COG3634 179 EF 180 (520)
T ss_pred hh
Confidence 43
No 490
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=62.28 E-value=29 Score=25.75 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=34.0
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCchhHHHHHHHcCcCCCCeEEE
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDESEKTKELCEREKIKKVPHFSF 201 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 201 (348)
+..|+.+.|+.|+++.-.+....- ++.+..+|.+.. ..++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~--~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDK--PDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCC--cHHHHhhCCCCCcCEEEE
Confidence 445677889999987755555322 245556665442 234555666778999874
No 491
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.21 E-value=17 Score=32.52 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCccceEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhC
Q 018973 299 CMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-GKGELIGEILRYQG 343 (348)
Q Consensus 299 ~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~~~~L~~~l~~~~~ 343 (348)
..++++++||.++||+++ +|+ .+.|. +.++|.+.|.....
T Consensus 204 ~~~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~~ 244 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEALK 244 (244)
T ss_pred HHHHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhhC
No 492
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=62.20 E-value=21 Score=28.31 Aligned_cols=46 Identities=4% Similarity=0.023 Sum_probs=30.8
Q ss_pred EEEEeCCCCHHHHhhhhHHHHHHHHcCCcEEEEEeCCCc----hhHHHHHHHcCc
Q 018973 143 VVEFAASRSLDSSKIYPFMVDLSRQCNDVEFILVMGDES----EKTKELCEREKI 193 (348)
Q Consensus 143 vV~F~a~wC~~C~~~~p~l~~la~~~~~v~f~~vd~d~~----~~~~~l~~~~~V 193 (348)
+..|..+.|..|++....|++ .++.|-.+|..+. ++..++.++.|+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~-----~gi~~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA-----AGHEVEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH-----cCCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence 457888999999998877776 3566666665432 234556665543
No 493
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=61.32 E-value=89 Score=25.50 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=46.4
Q ss_pred CCceEecCHHHHHHHHHhcCCCEEEEEEeCCCCHHHH--hhhhHHHHHHH--HcCCcEEEEEeCCCchhHHHHHHHcCcC
Q 018973 119 ERVKKVHSIEEFDEALRLAKNKLVVVEFAASRSLDSS--KIYPFMVDLSR--QCNDVEFILVMGDESEKTKELCEREKIK 194 (348)
Q Consensus 119 ~~v~~v~s~~~f~~~l~~~~~k~vvV~F~a~wC~~C~--~~~p~l~~la~--~~~~v~f~~vd~d~~~~~~~l~~~~~V~ 194 (348)
..+.+..|.++.++.+++.++...|| -.+-|| |. ...|....... +.+| .++.|=...+.+..+-+++|=..
T Consensus 16 ~Gf~eL~T~e~Vd~~~~~~~GTtlVv--VNSVCG-CAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~~ 91 (136)
T PF06491_consen 16 AGFEELTTAEEVDEALKNKEGTTLVV--VNSVCG-CAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFEP 91 (136)
T ss_dssp TT-EE--SHHHHHHHHHH--SEEEEE--EE-SSH-HHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTSTT
T ss_pred cCccccCCHHHHHHHHhCCCCcEEEE--Eecccc-ccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcCC
Confidence 35788999999999999544433222 347888 53 33455544433 2344 22333322222234455665432
Q ss_pred ---CCCeEEEeeccccccc
Q 018973 195 ---KVPHFSFYKSMEKIHE 210 (348)
Q Consensus 195 ---~~Pt~~~~~~g~~v~~ 210 (348)
+-|++.+||+|+.++-
T Consensus 92 ~pPSSPS~ALfKdGelvh~ 110 (136)
T PF06491_consen 92 YPPSSPSIALFKDGELVHF 110 (136)
T ss_dssp S---SSEEEEEETTEEEEE
T ss_pred CCCCCchheeeeCCEEEEE
Confidence 4578999999999853
No 494
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=60.06 E-value=86 Score=24.91 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhhhhhhhHHHHHHHHhCCc-EEEEEEECCCc---------hhHHHHHHhCCCCcc--ceEEEEeCCeEEEEEeCC-ChH
Q 018973 266 GPCVKVYPTVIKLSRQMAGT-VVFARMNGDEN---------DSCMQFLRDMNVVEV--PTFLFIRDGQIRGRYVGS-GKG 332 (348)
Q Consensus 266 ~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~---------~~~~~l~~~~~V~~~--PTl~~~~~G~~v~~~~G~-~~~ 332 (348)
+.-+.+...|.+-...+.++ +.++.+-.+.. ..+.++.++|++..- -.+++-+||.+..+.... +.+
T Consensus 23 ~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~ 102 (118)
T PF13778_consen 23 PRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPE 102 (118)
T ss_pred HHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHH
Confidence 33444444555533344332 55555532211 224568899996633 345555999998888887 999
Q ss_pred HHHHHHHHH
Q 018973 333 ELIGEILRY 341 (348)
Q Consensus 333 ~L~~~l~~~ 341 (348)
+|.+.|+..
T Consensus 103 ~lf~~ID~M 111 (118)
T PF13778_consen 103 ELFDTIDAM 111 (118)
T ss_pred HHHHHHhCC
Confidence 999988753
No 495
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=58.86 E-value=5.1 Score=29.95 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCChhhhhhhhHHHHHHHHh-CCcEEEEEEECCCchhHHHHHHhCCCCccceEE
Q 018973 262 LKHCGPCVKVYPTVIKLSRQM-AGTVVFARMNGDENDSCMQFLRDMNVVEVPTFL 315 (348)
Q Consensus 262 a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~ 315 (348)
+..-+........+..+.+.+ ++.+.+--||+.++++ +++.++|-.+||++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~---lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE---LAEEDRIVATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS---HHTTTEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh---HHhHCCeeecceEe
Confidence 333445566666677776664 5669999999999998 99999999999976
No 496
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=58.74 E-value=75 Score=28.01 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=50.2
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECC--Cc-------------hhHHHHHHhCCCCcc--ceEEEEeCC
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGD--EN-------------DSCMQFLRDMNVVEV--PTFLFIRDG 320 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~--~~-------------~~~~~l~~~~~V~~~--PTl~~~~~G 320 (348)
=.|.+..|..|-.....|.+++.+ .++......+| +. ..-+..++.++..++ |.+++ ||
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~--~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR--PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH--TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC--CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 368889999999999999999988 35666655554 11 112346666777665 55555 88
Q ss_pred eEEEEEeCCChHHHHHHHHHHhC
Q 018973 321 QIRGRYVGSGKGELIGEILRYQG 343 (348)
Q Consensus 321 ~~v~~~~G~~~~~L~~~l~~~~~ 343 (348)
+. ...|.+...+...|.+...
T Consensus 79 ~~--~~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 79 RE--HRVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp TE--EEETT-HHHHHHHHHHHHH
T ss_pred ee--eeeccCHHHHHHHHHHhhc
Confidence 64 4578888889888887743
No 497
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=58.53 E-value=20 Score=28.43 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=28.6
Q ss_pred EEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch----hHHHHHHhCCC
Q 018973 257 VLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND----SCMQFLRDMNV 308 (348)
Q Consensus 257 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~~~l~~~~~V 308 (348)
+..|+.+.|..|++....|++ . ++.|-.+|.-+.+ ++..+++++|+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~----~--gi~~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA----A--GHEVEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence 346789999999998655554 2 3556666654332 34456665543
No 498
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=58.24 E-value=17 Score=30.90 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=20.2
Q ss_pred EeCCCCHHHHhhhhHHHHHHHHcC
Q 018973 146 FAASRSLDSSKIYPFMVDLSRQCN 169 (348)
Q Consensus 146 F~a~wC~~C~~~~p~l~~la~~~~ 169 (348)
|+-.-|+-|-...+.|+++.++++
T Consensus 4 ~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 4 YFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEeCCChHHHHHHHHHHHHHHHhC
Confidence 445579999999999999998885
No 499
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=58.02 E-value=4.5 Score=37.73 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCchhHHHHHHhCCCCccceEEEEeCCeEEEEEeCC-C
Q 018973 252 DQKLIVLDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDENDSCMQFLRDMNVVEVPTFLFIRDGQIRGRYVGS-G 330 (348)
Q Consensus 252 ~~k~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~~~l~~~~~V~~~PTl~~~~~G~~v~~~~G~-~ 330 (348)
+...+-+.||+.||+.-+...|.+.-...-+. .+.... +++....-....++++.+.|++++...-- ..++-|. +
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~--vee~~~lpsv~s~~~~~~~ps~~~~n~t~-~~~~~~~r~ 150 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFA--VEESQALPSVFSSYGIHSEPSNLMLNQTC-PASYRGERD 150 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc-cccccc--HHHHhhcccchhccccccCCcceeecccc-chhhccccc
Confidence 36788899999999999999998877766664 233333 23322212277889999999988764432 3455677 8
Q ss_pred hHHHHHHHHHHhC
Q 018973 331 KGELIGEILRYQG 343 (348)
Q Consensus 331 ~~~L~~~l~~~~~ 343 (348)
...|+++..+.++
T Consensus 151 l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHHhhcc
Confidence 8899999888775
No 500
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=57.54 E-value=63 Score=22.52 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=33.1
Q ss_pred EEEeCCCChhhhhhhhHHHHHHHHhCCcEEEEEEECCCch-hHHHHHHhCCCCccceEEE
Q 018973 258 LDVGLKHCGPCVKVYPTVIKLSRQMAGTVVFARMNGDEND-SCMQFLRDMNVVEVPTFLF 316 (348)
Q Consensus 258 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~~~l~~~~~V~~~PTl~~ 316 (348)
..|+.++|+.|++..-.+.+..- .+....+|..+.+ ...++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 35788999999987655555322 2445555543221 1123666666778999963
Done!