BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018975
(348 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QZR0|RNF25_MOUSE E3 ubiquitin-protein ligase RNF25 OS=Mus musculus GN=Rnf25 PE=1
SV=2
Length = 456
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 34/261 (13%)
Query: 9 ELEAVQAVYGDECVVLDS---YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPP 65
E+E ++++Y DE V+ P + + + P TA+V QFV + +R +YP P
Sbjct: 19 EVEVLESIYLDELQVMKGNGRSPWEIFITLHPATAEVQDSQFVCFTLVLRIPVQYPHEVP 78
Query: 66 RIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCL 125
+I + +GL D++ + + A E ML L E+ L+ N P G C +CL
Sbjct: 79 QISIRNPRGLSDEQIHKISQALGHVAKEGLGTAMLYELIEKGKEILTDNNIPHGQCVICL 138
Query: 126 YPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKD 185
Y K+ F K C+H FH C+ R+ ++ + T + ++
Sbjct: 139 YGFQEKEA------FTK-TPCYHYFHCHCLARYIQHMEQELTTQ---------EQEQERQ 182
Query: 186 MLGPIDGNMGT-CPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENI 244
+ +G CPVCR+ V DL + E + +E++
Sbjct: 183 HVVTKQKAVGVQCPVCREPL-VYDLASL------------KAAPEPQQPMELYQPSAESL 229
Query: 245 RRQ-KFEAILKLQEENSGLIE 264
R+Q + + + + Q+E G+I+
Sbjct: 230 RQQEELKLLYQRQQEKGGIID 250
>sp|Q5E9N3|RNF25_BOVIN E3 ubiquitin-protein ligase RNF25 OS=Bos taurus GN=RNF25 PE=2 SV=1
Length = 458
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 125/308 (40%), Gaps = 50/308 (16%)
Query: 9 ELEAVQAVYGDECVVLD----SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHP 64
E+E ++++Y DE V+ S P +++ + P TA+ Q+V + ++ +YP
Sbjct: 19 EVEVLESIYLDELQVVKGNGRSSPWEIYITLHPATAEDQDSQYVCFTLVLQVPTQYPHEV 78
Query: 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLC 124
P+I + +GL D++ + + A ML L E+ L+ N P G C +C
Sbjct: 79 PQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHGQCVIC 138
Query: 125 LYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQK 184
LY K+ F K C+H F C+ R+ +++ ++ + ++
Sbjct: 139 LYGFQEKEA------FTK-TPCYHYFRCHCLARYIQHMEHELQAQ-------GREREQER 184
Query: 185 DMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENI 244
P CPVCR+ V DL + E + D+E++
Sbjct: 185 QHAAPEQAVGVQCPVCREPL-VYDLASL------------KAAPEPQQPMELYQPDAESL 231
Query: 245 RRQ-KFEAILKLQEENSGLI----EPKRDLVVL---PGMFLP-----------QPATLPT 285
R+Q + + + + Q+E G+I E R + L P P QP+TL T
Sbjct: 232 RQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPLEPESAIDVSRGSHQPSTLAT 291
Query: 286 PTSTKETT 293
ST T
Sbjct: 292 KPSTTSAT 299
>sp|Q96BH1|RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1
SV=1
Length = 459
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 130/308 (42%), Gaps = 36/308 (11%)
Query: 9 ELEAVQAVYGDECVVLD----SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHP 64
E+E ++++Y DE V+ + P +++ + P TA+ Q+V + ++ +YP
Sbjct: 19 EVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEV 78
Query: 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLC 124
P+I + +GL D++ ++ + A ML L E+ L+ N P G C +C
Sbjct: 79 PQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDNNIPHGQCVIC 138
Query: 125 LYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQK 184
LY K+ F K C+H FH C+ R+ ++ ++ ++
Sbjct: 139 LYGFQEKEA------FTK-TPCYHYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQ 191
Query: 185 DMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENI 244
+G CPVCR+ V DL + E + +E++
Sbjct: 192 KAVG------VQCPVCREPL-VYDLASL------------KAAPEPQQPMELYQPSAESL 232
Query: 245 RRQ-KFEAILKLQEENSGLI--EPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQS 301
R+Q + + + + Q+E G+I E +R+ + L QP P S + ++ Q +
Sbjct: 233 RQQEERKRLYQRQQERGGIIDLEAERNRYFI---SLQQPPAPAEPESAVDVSKGSQPPST 289
Query: 302 APAEINAT 309
AE++ +
Sbjct: 290 LAAELSTS 297
>sp|Q9LX30|GCN2_ARATH Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis
thaliana GN=GCN2 PE=2 SV=2
Length = 1241
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 4 EEVAMELEAVQAVYGDEC-VVLDSY-PPHLHLRIKPRTADVSSQQF-VEAVIGIRASPKY 60
E ++ E+ A+ A++ ++C VV DS PP + ++++P + D+ + + A++ +R P Y
Sbjct: 33 ELLSEEITALSAIFQEDCKVVSDSRSPPQIAIKLRPYSKDMGYEDTDISAMLIVRCLPGY 92
Query: 61 PEHPPRIDLIESKGLDDQRQKHLISCIQDKAHE-----LTSCLMLVALCEEAVAKLSAMN 115
P P++ + +GL + L+S ++D+A+ LV +E ++++ +
Sbjct: 93 PYKCPKLQITPEQGLTTADAEKLLSLLEDQANSNAREGRVMIFNLVEAAQEFLSEIIPES 152
Query: 116 HPDGDCPLCL 125
H + P CL
Sbjct: 153 HDEESVP-CL 161
>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1
Length = 243
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 4 EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEH 63
EE ELEA++++Y D VL PP + + + + + V+ + S KYP+
Sbjct: 6 EEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPDE 63
Query: 64 PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114
P ++ + L+D ++ + +A E +M+ L KL+ +
Sbjct: 64 APLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 114
>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1
Length = 243
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 4 EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEH 63
EE ELEA++++Y D VL PP + + + + + V+ + S KYP+
Sbjct: 6 EEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPDE 63
Query: 64 PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114
P ++ + L+D ++ + +A E +M+ L KL+ +
Sbjct: 64 TPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 114
>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2
SV=1
Length = 243
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 4 EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEH 63
EE ELEA++++Y D VL PP + + + + + V+ + S KYP+
Sbjct: 6 EEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPDE 63
Query: 64 PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114
P ++ + L+D ++ + +A E +M+ L KL+ +
Sbjct: 64 APLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 114
>sp|Q9QZ05|E2AK4_MOUSE Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Mus
musculus GN=Eif2ak4 PE=1 SV=2
Length = 1648
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 9 ELEAVQAVYGDECVVLD-------SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYP 61
EL+A++A+YG + L PP ++L + P+ + +V+ + ++ P YP
Sbjct: 26 ELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGL-AGEEVYVQVELQVKCPPTYP 84
Query: 62 EHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHP 117
+ P I+L +KGL ++ L S +++ A + +M+ L + LS N P
Sbjct: 85 DVVPEIELKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKP 140
>sp|Q9P2K8|E2AK4_HUMAN Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo
sapiens GN=EIF2AK4 PE=1 SV=3
Length = 1649
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 9 ELEAVQAVYG--------DECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKY 60
EL+A++A+YG D C + PP ++L + P+ + +V+ + ++ P Y
Sbjct: 26 ELQALEAIYGADFQDLRPDACGPVKE-PPEINLVLYPQGL-TGEEVYVKVDLRVKCPPTY 83
Query: 61 PEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHP 117
P+ P I+L +KGL ++ L S +++ A + +M+ L + LS N P
Sbjct: 84 PDVVPEIELKNAKGLSNESVNLLKSRLEELAKKHCGEVMIFELAYHVQSFLSEHNKP 140
>sp|Q75JN1|IFKC_DICDI Probable serine/threonine-protein kinase ifkC OS=Dictyostelium
discoideum GN=ifkC PE=3 SV=1
Length = 1700
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 8 MELEAVQAVYGDECVVLDSY------------------PPHLHLRIKPRTADVSSQQFVE 49
MELEA+QA++ DE + +D + IKP D + FV
Sbjct: 74 MELEALQAIFNDEFITMDPIIINRNMDTIIEGIKPIRESARFRITIKPYVGD-DEKCFVS 132
Query: 50 AVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVA 109
+ + KYP P I ++ +KGL ++ L + ++ +M+ LCE A
Sbjct: 133 IYLVVGFPEKYPVVLPSIQVLVNKGLPQKKAIELEEKLIRESQGKIGNIMIFDLCEIAKD 192
Query: 110 KLSAMN 115
L+ N
Sbjct: 193 FLNENN 198
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 23/117 (19%)
Query: 72 SKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHP------DGDCPLCL 125
++GLDD +IS + ++A + E+ +AK+ P +G+C +C+
Sbjct: 349 ARGLDD-----IISQLMEQAQGHNA---PAPAPEDVIAKMKVQKPPKELIDEEGECTICM 400
Query: 126 YPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRN 182
+F+ + +V LP C H FH CI W NG A V PN+ RN
Sbjct: 401 E-MFKINDDVIQLP------CKHYFHENCIKPWLRV--NGTCAICRAPVDPNSQQRN 448
>sp|Q65XX2|LTN1_CAEEL E3 ubiquitin-protein ligase listerin OS=Caenorhabditis elegans
GN=Y54E10A.11 PE=3 SV=1
Length = 1446
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 43/183 (23%)
Query: 27 YPPHLHLRIKPRTADVSSQQFVEAV---IGIRASPKYPEHPPRIDLIESKGLDDQRQKHL 83
+ + +R P T ++ ++ VE + I P YP P + L ++ D+ +K L
Sbjct: 1301 FEGEMKVRTVPVTGEIIAEYVVEETKMKLTIGLPPDYPLSVPSLTLDKAIVKTDRAKKWL 1360
Query: 84 ISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDG--DCPLCLYPLFRKDKNVEVLPFM 141
+ H+ + L + + + V K +G DC +C+ + ++ LP +
Sbjct: 1361 LQLNAYLFHQNGAILEGIEMWKRNVDK-----GVEGVEDCTICMMTVHQQTHQ---LPKI 1412
Query: 142 KLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCR 201
K C + FHS C+ +W+ N TCP+CR
Sbjct: 1413 KCKQCKNKFHSNCLYKWFE------------------------------SSNQSTCPLCR 1442
Query: 202 KVF 204
F
Sbjct: 1443 NNF 1445
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 74 GLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDK 133
GLDD K L + A + AV K SA N DC +CL F +
Sbjct: 120 GLDDSVIKTLPLFLYSAA---------ACTGKPAVGKTSAANC--RDCAVCLLE-FEEGD 167
Query: 134 NVEVLPFMKLMSCFHCFHSECIVRW 158
V LP CFH FH ECI W
Sbjct: 168 YVRTLPL-----CFHAFHLECIDEW 187
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQN 164
DCP+CL F +D+++ +LP C H FH CI W + N
Sbjct: 176 DCPVCLNE-FEEDESLRLLP-----KCNHAFHISCIDTWLSSHTN 214
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
DCP+CL +DK + +LP C H FH ECI W
Sbjct: 125 DCPVCLCEFETEDK-LRLLP-----KCSHAFHVECIDTW 157
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 115 NHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
N+ D CP+CL K+ V +P C HCFHSECI W
Sbjct: 314 NNDDIVCPICLSEYASKE-TVRCIP-----ECDHCFHSECIDVW 351
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 115 NHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
N+ D C +CL P +D + + SC H +H +CI+ W
Sbjct: 40 NNTDDACSICLEPFTLQDPST-------VTSCKHEYHLQCIIEW 76
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 42/112 (37%)
Query: 110 KLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETD 169
+ S+MN GDC +CL F + + +LP C H FH++CI W
Sbjct: 108 RSSSMN--SGDCAVCLSK-FEPEDQLRLLPL-----CCHAFHADCIDIWL---------- 149
Query: 170 SCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHV--KDLEHVLNLVGSQ 219
+ NQ TCP+CR DL L +VGS
Sbjct: 150 ----------VSNQ------------TCPLCRSPLFASESDLMKSLAVVGSN 179
>sp|Q5E304|YGFZ_VIBF1 tRNA-modifying protein YgfZ OS=Vibrio fischeri (strain ATCC 700601
/ ES114) GN=VF_2097 PE=3 SV=1
Length = 318
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 83 LISCIQDKAHELTSCLMLVALCEEAVAKLSAMNH--PDGDCPLC 124
L+ DK EL S L LC+EA+ L + H P D PLC
Sbjct: 156 LLVTTDDKKEELLSLLSEATLCDEAIWSLHHIKHALPQIDAPLC 199
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
D CP+CL K+ V LP C HCFH+ECI W
Sbjct: 324 DVVCPICLSEYATKE-TVRCLP-----ECEHCFHTECIDAW 358
>sp|Q91790|DUS1A_XENLA Dual specificity protein phosphatase 1-A OS=Xenopus laevis
GN=dusp1-a PE=1 SV=1
Length = 369
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 111 LSAMNHP---DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFH 148
L A N P D +C C PL+ + VE+LPF+ L S +H
Sbjct: 150 LCANNVPGSADSNCTPCGTPLYDQGGPVEILPFLYLGSAYH 190
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 117 PDGD-CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
PDGD C +C+ P D +++++C H FH CI W
Sbjct: 255 PDGDSCAVCIEPYKPSD-------VVRILTCNHFFHKNCIDPW 290
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 118 DG-DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159
DG +C +CL L + DK +LP C H FH ECI W+
Sbjct: 123 DGLECSICLSELVKGDK-ARLLP-----KCNHSFHVECIDMWF 159
>sp|Q90W58|DUS1B_XENLA Dual specificity protein phosphatase 1-B OS=Xenopus laevis
GN=dusp1-b PE=2 SV=1
Length = 369
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFH 148
D +C C PL+ + VE+LPF+ L S +H
Sbjct: 160 DSNCTPCGTPLYDQGGPVEILPFLYLGSAYH 190
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
DC +CL F +D+++ +LP C H FH CI RW
Sbjct: 154 DCSICLGE-FNEDESLRLLP-----KCNHTFHVVCIDRW 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,384,573
Number of Sequences: 539616
Number of extensions: 5854595
Number of successful extensions: 19278
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 19230
Number of HSP's gapped (non-prelim): 117
length of query: 348
length of database: 191,569,459
effective HSP length: 118
effective length of query: 230
effective length of database: 127,894,771
effective search space: 29415797330
effective search space used: 29415797330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)