Query 018975
Match_columns 348
No_of_seqs 272 out of 2029
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4445 Uncharacterized conser 100.0 6.9E-41 1.5E-45 307.3 10.7 231 8-269 6-238 (368)
2 smart00591 RWD domain in RING 99.7 1.5E-16 3.2E-21 128.9 12.0 104 9-113 1-106 (107)
3 PF05773 RWD: RWD domain; Int 99.7 1.6E-16 3.4E-21 129.7 8.7 110 2-111 2-113 (113)
4 KOG4018 Uncharacterized conser 99.6 5.6E-15 1.2E-19 131.5 11.6 111 1-113 1-114 (215)
5 KOG1814 Predicted E3 ubiquitin 99.4 3.4E-13 7.3E-18 130.1 9.5 147 1-160 4-219 (445)
6 PF13639 zf-RING_2: Ring finge 99.3 1.5E-12 3.2E-17 89.3 1.4 35 119-160 1-35 (44)
7 COG5219 Uncharacterized conser 99.2 3.6E-11 7.7E-16 125.3 10.6 122 49-205 1402-1523(1525)
8 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.7E-10 3.8E-15 87.8 3.2 44 116-160 17-64 (73)
9 PHA02929 N1R/p28-like protein; 99.0 3.8E-10 8.2E-15 104.2 4.7 55 117-205 173-227 (238)
10 COG5540 RING-finger-containing 99.0 1.9E-10 4E-15 107.3 2.3 50 119-206 324-373 (374)
11 KOG4628 Predicted E3 ubiquitin 99.0 2.2E-10 4.8E-15 110.3 2.1 50 119-206 230-279 (348)
12 KOG0320 Predicted E3 ubiquitin 98.9 3.6E-10 7.8E-15 98.2 2.6 56 115-210 128-183 (187)
13 PF12861 zf-Apc11: Anaphase-pr 98.9 1.6E-09 3.5E-14 83.8 3.5 58 118-206 21-83 (85)
14 COG5243 HRD1 HRD ubiquitin lig 98.8 5.2E-09 1.1E-13 100.1 6.4 43 116-160 285-332 (491)
15 PLN03208 E3 ubiquitin-protein 98.8 1.3E-09 2.9E-14 96.8 2.3 71 117-213 17-87 (193)
16 KOG2164 Predicted E3 ubiquitin 98.8 1.3E-09 2.9E-14 108.3 2.4 58 118-212 186-243 (513)
17 KOG0317 Predicted E3 ubiquitin 98.7 6E-09 1.3E-13 97.0 3.1 53 116-210 237-289 (293)
18 cd00162 RING RING-finger (Real 98.7 2E-08 4.4E-13 67.6 3.6 32 120-160 1-32 (45)
19 PHA02926 zinc finger-like prot 98.6 1.1E-07 2.3E-12 85.8 7.7 63 116-205 168-230 (242)
20 smart00504 Ubox Modified RING 98.6 3.2E-08 6.9E-13 72.5 3.6 53 119-213 2-54 (63)
21 KOG0823 Predicted E3 ubiquitin 98.6 1.3E-08 2.8E-13 92.2 1.7 58 117-213 46-103 (230)
22 PF15227 zf-C3HC4_4: zinc fing 98.6 2.5E-08 5.4E-13 67.7 2.3 30 121-160 1-30 (42)
23 KOG1493 Anaphase-promoting com 98.5 1.8E-08 3.9E-13 75.6 0.7 59 116-205 18-81 (84)
24 PF13923 zf-C3HC4_2: Zinc fing 98.5 5.5E-08 1.2E-12 64.8 2.3 31 121-160 1-31 (39)
25 PF13920 zf-C3HC4_3: Zinc fing 98.5 7.2E-08 1.6E-12 67.8 2.7 46 118-205 2-48 (50)
26 KOG0828 Predicted E3 ubiquitin 98.5 4.3E-08 9.4E-13 96.8 1.7 59 116-206 569-635 (636)
27 TIGR00599 rad18 DNA repair pro 98.5 9.1E-08 2E-12 94.5 4.0 51 117-209 25-75 (397)
28 COG5194 APC11 Component of SCF 98.4 1.4E-07 3.1E-12 71.4 2.7 51 119-206 32-82 (88)
29 PF14634 zf-RING_5: zinc-RING 98.3 2.9E-07 6.3E-12 63.0 2.6 33 120-159 1-33 (44)
30 KOG0802 E3 ubiquitin ligase [P 98.3 2.3E-07 5.1E-12 96.0 1.9 38 118-160 291-328 (543)
31 KOG1035 eIF-2alpha kinase GCN2 98.3 1.8E-07 3.8E-12 101.5 0.6 109 4-115 8-117 (1351)
32 PF11793 FANCL_C: FANCL C-term 98.3 3.5E-07 7.6E-12 69.0 2.0 65 118-207 2-68 (70)
33 PF00097 zf-C3HC4: Zinc finger 98.3 5.5E-07 1.2E-11 60.3 2.3 31 121-160 1-31 (41)
34 KOG0804 Cytoplasmic Zn-finger 98.2 2.5E-07 5.4E-12 90.7 0.7 36 119-160 176-211 (493)
35 smart00184 RING Ring finger. E 98.2 9.5E-07 2.1E-11 57.2 3.0 30 121-160 1-30 (39)
36 COG5574 PEX10 RING-finger-cont 98.2 5.7E-07 1.2E-11 83.0 2.6 51 118-209 215-266 (271)
37 TIGR00570 cdk7 CDK-activating 98.2 2.1E-06 4.6E-11 81.8 5.8 55 118-208 3-57 (309)
38 KOG0287 Postreplication repair 98.2 4.9E-07 1.1E-11 85.8 1.5 50 119-210 24-73 (442)
39 COG5432 RAD18 RING-finger-cont 98.1 9E-07 2E-11 82.5 1.8 46 119-206 26-71 (391)
40 PF14835 zf-RING_6: zf-RING of 97.9 2.3E-06 4.9E-11 62.7 0.3 54 119-215 8-61 (65)
41 KOG1734 Predicted RING-contain 97.9 1.1E-06 2.5E-11 81.0 -1.8 67 110-206 216-282 (328)
42 PF04564 U-box: U-box domain; 97.9 6.4E-06 1.4E-10 62.6 1.9 56 119-215 5-60 (73)
43 PF13445 zf-RING_UBOX: RING-ty 97.8 1.1E-05 2.4E-10 54.9 2.5 33 121-160 1-33 (43)
44 KOG0978 E3 ubiquitin ligase in 97.8 1.6E-05 3.4E-10 83.1 4.8 52 119-211 644-695 (698)
45 smart00744 RINGv The RING-vari 97.8 1.5E-05 3.2E-10 55.9 3.0 33 120-160 1-38 (49)
46 KOG1645 RING-finger-containing 97.7 3.4E-05 7.4E-10 75.2 3.9 63 119-216 5-67 (463)
47 KOG2177 Predicted E3 ubiquitin 97.6 2E-05 4.3E-10 73.4 1.8 34 117-160 12-45 (386)
48 KOG0827 Predicted E3 ubiquitin 97.6 3.2E-05 6.9E-10 74.9 1.8 36 119-160 5-40 (465)
49 KOG2930 SCF ubiquitin ligase, 97.5 5.2E-05 1.1E-09 60.4 1.8 16 145-160 80-95 (114)
50 KOG0825 PHD Zn-finger protein 97.4 3.5E-05 7.7E-10 80.2 -0.2 51 117-206 122-172 (1134)
51 KOG0824 Predicted E3 ubiquitin 97.3 0.00011 2.3E-09 69.3 2.4 49 118-207 7-55 (324)
52 KOG4172 Predicted E3 ubiquitin 97.3 7.2E-05 1.6E-09 52.8 0.5 46 118-204 7-53 (62)
53 KOG3970 Predicted E3 ubiquitin 97.3 0.00034 7.4E-09 63.3 4.9 49 103-160 36-84 (299)
54 KOG1002 Nucleotide excision re 97.2 0.00023 5E-09 71.5 2.7 65 112-213 530-594 (791)
55 KOG0311 Predicted E3 ubiquitin 97.0 8.6E-05 1.9E-09 71.3 -2.0 50 118-207 43-92 (381)
56 KOG4265 Predicted E3 ubiquitin 96.8 0.00063 1.4E-08 65.7 2.0 47 118-206 290-337 (349)
57 KOG1952 Transcription factor N 96.8 0.0012 2.6E-08 69.8 4.1 52 100-160 176-227 (950)
58 KOG2660 Locus-specific chromos 96.7 0.00039 8.5E-09 66.4 0.2 51 116-207 13-63 (331)
59 KOG1039 Predicted E3 ubiquitin 96.7 0.0011 2.3E-08 64.7 2.7 62 116-204 159-220 (344)
60 KOG0309 Conserved WD40 repeat- 96.5 0.025 5.4E-07 59.5 11.1 116 6-131 425-545 (1081)
61 KOG3268 Predicted E3 ubiquitin 96.3 0.0039 8.4E-08 54.7 3.4 67 117-207 164-230 (234)
62 PF11789 zf-Nse: Zinc-finger o 96.3 0.0016 3.4E-08 47.1 0.8 33 118-159 11-43 (57)
63 COG5222 Uncharacterized conser 95.9 0.0086 1.9E-07 56.6 4.1 32 119-159 275-306 (427)
64 PF10367 Vps39_2: Vacuolar sor 95.9 0.0083 1.8E-07 48.2 3.5 34 116-157 76-109 (109)
65 KOG2034 Vacuolar sorting prote 95.9 0.011 2.4E-07 63.2 5.1 39 116-162 815-853 (911)
66 PF10272 Tmpp129: Putative tra 95.8 0.055 1.2E-06 53.2 9.5 115 74-209 215-355 (358)
67 KOG4159 Predicted E3 ubiquitin 95.8 0.0055 1.2E-07 61.0 2.3 48 117-206 83-130 (398)
68 COG5152 Uncharacterized conser 95.7 0.004 8.6E-08 55.6 1.1 31 119-159 197-227 (259)
69 KOG1941 Acetylcholine receptor 95.4 0.0061 1.3E-07 59.5 1.0 36 119-160 366-401 (518)
70 KOG4185 Predicted E3 ubiquitin 95.2 0.017 3.6E-07 55.3 3.6 59 119-212 4-64 (296)
71 KOG1813 Predicted E3 ubiquitin 95.2 0.0073 1.6E-07 57.1 0.9 30 120-159 243-272 (313)
72 KOG0297 TNF receptor-associate 95.2 0.011 2.5E-07 58.9 2.3 36 116-160 19-54 (391)
73 PLN00172 ubiquitin conjugating 94.8 0.11 2.4E-06 44.7 7.1 69 1-71 1-71 (147)
74 KOG4739 Uncharacterized protei 94.7 0.012 2.5E-07 54.3 1.0 29 119-155 4-32 (233)
75 KOG1785 Tyrosine kinase negati 94.7 0.21 4.6E-06 49.2 9.4 36 113-158 364-399 (563)
76 PHA02862 5L protein; Provision 94.7 0.023 5E-07 48.3 2.5 53 118-206 2-54 (156)
77 KOG1428 Inhibitor of type V ad 94.3 0.025 5.5E-07 63.0 2.4 36 118-160 3486-3521(3738)
78 PF14570 zf-RING_4: RING/Ubox 94.3 0.041 9E-07 38.2 2.7 31 121-157 1-31 (48)
79 KOG1571 Predicted E3 ubiquitin 94.3 0.015 3.2E-07 56.5 0.5 28 119-158 306-333 (355)
80 PF04641 Rtf2: Rtf2 RING-finge 93.9 0.046 9.9E-07 51.6 3.0 56 116-210 111-166 (260)
81 KOG3039 Uncharacterized conser 93.9 0.043 9.4E-07 50.7 2.7 56 118-211 221-276 (303)
82 KOG1812 Predicted E3 ubiquitin 93.8 0.15 3.2E-06 50.9 6.5 65 117-213 145-211 (384)
83 KOG2114 Vacuolar assembly/sort 93.5 0.096 2.1E-06 56.0 4.8 30 118-156 840-869 (933)
84 PHA03096 p28-like protein; Pro 93.4 0.048 1E-06 52.1 2.2 40 119-160 179-218 (284)
85 PTZ00390 ubiquitin-conjugating 93.3 0.38 8.2E-06 41.7 7.4 70 1-72 1-73 (152)
86 PF12906 RINGv: RING-variant d 93.2 0.063 1.4E-06 37.1 2.0 32 121-160 1-37 (47)
87 KOG3053 Uncharacterized conser 92.6 0.05 1.1E-06 50.5 1.1 39 116-160 18-61 (293)
88 KOG2879 Predicted E3 ubiquitin 92.6 0.098 2.1E-06 49.1 2.9 51 116-205 237-287 (298)
89 KOG0421 Ubiquitin-protein liga 92.6 1.8 3.9E-05 36.9 10.1 47 48-94 76-124 (175)
90 PHA02825 LAP/PHD finger-like p 92.4 0.15 3.3E-06 44.2 3.6 53 116-207 6-61 (162)
91 KOG3002 Zn finger protein [Gen 92.0 0.096 2.1E-06 50.4 2.3 29 117-156 47-77 (299)
92 KOG1001 Helicase-like transcri 91.9 0.046 1E-06 58.2 -0.0 49 119-208 455-503 (674)
93 COG5078 Ubiquitin-protein liga 91.6 0.84 1.8E-05 39.6 7.5 68 4-73 8-78 (153)
94 PF07800 DUF1644: Protein of u 91.6 0.58 1.3E-05 40.6 6.3 40 118-160 2-47 (162)
95 KOG0827 Predicted E3 ubiquitin 91.5 0.0065 1.4E-07 59.3 -6.2 35 119-160 197-232 (465)
96 KOG1940 Zn-finger protein [Gen 91.3 0.12 2.7E-06 48.9 2.2 36 118-159 158-193 (276)
97 PF05883 Baculo_RING: Baculovi 91.1 0.095 2.1E-06 44.3 1.0 35 118-159 26-66 (134)
98 COG5175 MOT2 Transcriptional r 91.0 0.16 3.5E-06 49.0 2.6 56 117-209 13-68 (480)
99 KOG4275 Predicted E3 ubiquitin 90.5 0.07 1.5E-06 50.5 -0.3 52 96-157 270-330 (350)
100 KOG0826 Predicted E3 ubiquitin 90.5 0.2 4.4E-06 48.2 2.7 53 117-210 299-351 (357)
101 cd00195 UBCc Ubiquitin-conjuga 90.3 1 2.2E-05 38.1 6.7 64 5-70 3-68 (141)
102 PF00179 UQ_con: Ubiquitin-con 90.0 0.55 1.2E-05 39.7 4.8 64 6-71 2-68 (140)
103 smart00212 UBCc Ubiquitin-conj 89.4 1.3 2.8E-05 37.7 6.7 65 5-72 2-70 (145)
104 KOG3800 Predicted E3 ubiquitin 89.4 0.47 1E-05 45.0 4.2 51 120-206 2-52 (300)
105 PF05290 Baculo_IE-1: Baculovi 89.2 1.4 3.1E-05 37.2 6.5 55 116-206 78-133 (140)
106 KOG0417 Ubiquitin-protein liga 89.1 1.9 4.2E-05 37.0 7.3 69 1-71 1-71 (148)
107 KOG2932 E3 ubiquitin ligase in 88.6 0.19 4E-06 48.1 1.0 28 120-156 92-119 (389)
108 KOG3899 Uncharacterized conser 87.9 0.18 3.9E-06 47.7 0.4 44 148-210 327-370 (381)
109 KOG0801 Predicted E3 ubiquitin 87.8 0.15 3.3E-06 44.2 -0.1 30 116-152 175-204 (205)
110 PF14447 Prok-RING_4: Prokaryo 87.0 0.25 5.5E-06 35.2 0.6 32 143-208 22-53 (55)
111 KOG0298 DEAD box-containing he 86.3 0.37 7.9E-06 53.9 1.7 35 117-160 1152-1186(1394)
112 KOG1829 Uncharacterized conser 86.2 0.24 5.2E-06 51.5 0.2 17 141-157 532-548 (580)
113 PF08746 zf-RING-like: RING-li 85.1 0.59 1.3E-05 31.7 1.7 16 145-160 18-33 (43)
114 COG5183 SSM4 Protein involved 84.4 0.58 1.3E-05 50.0 2.1 40 113-160 7-51 (1175)
115 COG5236 Uncharacterized conser 83.5 0.61 1.3E-05 45.3 1.6 33 116-158 59-91 (493)
116 KOG4362 Transcriptional regula 83.3 0.27 5.8E-06 52.0 -1.0 35 116-160 19-53 (684)
117 PF03854 zf-P11: P-11 zinc fin 82.6 0.46 9.9E-06 32.8 0.3 33 143-207 15-48 (50)
118 KOG0416 Ubiquitin-protein liga 82.1 4.5 9.8E-05 35.6 6.2 73 22-96 23-98 (189)
119 PF05605 zf-Di19: Drought indu 81.5 2.5 5.5E-05 29.7 3.8 14 193-206 30-43 (54)
120 KOG4692 Predicted E3 ubiquitin 80.7 1.7 3.8E-05 42.4 3.6 35 116-160 420-454 (489)
121 KOG3161 Predicted E3 ubiquitin 80.3 0.68 1.5E-05 48.3 0.7 36 119-160 12-47 (861)
122 COG5220 TFB3 Cdk activating ki 78.5 0.77 1.7E-05 42.5 0.4 36 118-160 10-48 (314)
123 KOG0825 PHD Zn-finger protein 78.2 1.9 4.1E-05 46.1 3.2 44 116-162 94-137 (1134)
124 KOG0427 Ubiquitin conjugating 77.7 10 0.00022 31.9 6.8 71 4-76 18-89 (161)
125 PF14446 Prok-RING_1: Prokaryo 77.7 2.3 5.1E-05 30.3 2.6 34 115-154 2-35 (54)
126 PF13901 DUF4206: Domain of un 76.4 9.1 0.0002 34.7 6.8 31 118-155 152-187 (202)
127 KOG4718 Non-SMC (structural ma 74.0 5 0.00011 36.5 4.3 78 71-160 130-214 (235)
128 KOG3005 GIY-YIG type nuclease 73.8 2 4.4E-05 40.4 1.8 64 119-208 183-246 (276)
129 KOG2066 Vacuolar assembly/sort 71.8 3.1 6.7E-05 44.6 2.9 59 98-159 759-822 (846)
130 KOG1815 Predicted E3 ubiquitin 69.7 3.2 7E-05 42.2 2.4 34 118-160 70-103 (444)
131 PF08694 UFC1: Ubiquitin-fold 68.8 4.6 0.0001 34.5 2.7 30 47-76 74-103 (161)
132 KOG0419 Ubiquitin-protein liga 68.3 8.9 0.00019 32.3 4.3 26 46-71 49-74 (152)
133 KOG0309 Conserved WD40 repeat- 68.3 3.1 6.8E-05 44.4 2.0 18 143-160 1045-1062(1081)
134 KOG0420 Ubiquitin-protein liga 67.8 8.5 0.00018 33.9 4.2 39 30-71 61-99 (184)
135 KOG0422 Ubiquitin-protein liga 67.8 13 0.00028 31.7 5.2 65 4-71 5-72 (153)
136 KOG2817 Predicted E3 ubiquitin 67.7 13 0.00028 37.0 5.9 38 116-160 332-369 (394)
137 COG5627 MMS21 DNA repair prote 66.6 11 0.00024 35.0 4.9 34 118-160 189-222 (275)
138 PF02891 zf-MIZ: MIZ/SP-RING z 64.2 5.3 0.00012 27.8 1.9 35 119-163 3-37 (50)
139 KOG0803 Predicted E3 ubiquitin 62.5 1 2.3E-05 51.2 -2.9 36 119-160 1062-1099(1312)
140 KOG0418 Ubiquitin-protein liga 60.9 7 0.00015 34.9 2.5 24 48-71 53-76 (200)
141 PF07975 C1_4: TFIIH C1-like d 60.7 4.9 0.00011 28.3 1.2 35 121-155 2-36 (51)
142 KOG3970 Predicted E3 ubiquitin 59.7 5.3 0.00012 36.7 1.6 41 144-210 22-66 (299)
143 PF07191 zinc-ribbons_6: zinc- 58.8 0.86 1.9E-05 34.2 -3.0 40 119-205 2-41 (70)
144 KOG1609 Protein involved in mR 58.6 4.8 0.0001 38.3 1.2 37 118-160 78-119 (323)
145 KOG0425 Ubiquitin-protein liga 58.2 8 0.00017 33.6 2.3 39 30-72 39-77 (171)
146 PF00681 Plectin: Plectin repe 57.5 6.9 0.00015 26.5 1.5 21 251-271 2-22 (45)
147 PF04423 Rad50_zn_hook: Rad50 57.0 4.3 9.4E-05 28.6 0.4 16 194-209 20-35 (54)
148 PF06844 DUF1244: Protein of u 56.7 7 0.00015 29.0 1.5 11 150-160 12-22 (68)
149 smart00249 PHD PHD zinc finger 55.1 7.6 0.00017 25.3 1.4 30 120-156 1-30 (47)
150 KOG1100 Predicted E3 ubiquitin 52.3 6.4 0.00014 35.9 0.9 12 194-205 189-200 (207)
151 PF14569 zf-UDP: Zinc-binding 52.2 23 0.00051 27.1 3.7 36 118-156 9-44 (80)
152 KOG3039 Uncharacterized conser 51.7 12 0.00027 34.9 2.6 35 116-160 41-75 (303)
153 COG0777 AccD Acetyl-CoA carbox 48.7 56 0.0012 31.2 6.5 64 140-240 28-91 (294)
154 PF13717 zinc_ribbon_4: zinc-r 47.7 9 0.0002 24.8 0.8 33 119-151 3-36 (36)
155 PF14461 Prok-E2_B: Prokaryoti 46.3 20 0.00043 30.1 2.9 27 48-74 36-62 (133)
156 KOG0894 Ubiquitin-protein liga 46.0 14 0.00031 33.7 2.1 24 51-74 55-78 (244)
157 KOG4274 Positive cofactor 2 (P 44.5 92 0.002 32.7 7.7 92 4-108 622-714 (742)
158 KOG0269 WD40 repeat-containing 43.9 17 0.00038 39.0 2.6 34 119-160 780-813 (839)
159 KOG0424 Ubiquitin-protein liga 43.7 23 0.0005 30.4 2.8 22 50-71 58-79 (158)
160 PF05743 UEV: UEV domain; Int 43.3 21 0.00045 29.6 2.5 24 48-71 48-71 (121)
161 KOG1815 Predicted E3 ubiquitin 43.1 15 0.00032 37.4 2.0 41 118-160 226-266 (444)
162 PF04710 Pellino: Pellino; In 42.7 12 0.00026 37.3 1.1 45 108-153 267-316 (416)
163 KOG4367 Predicted Zn-finger pr 40.3 12 0.00026 37.7 0.7 31 118-158 4-34 (699)
164 PF06113 BRE: Brain and reprod 39.8 30 0.00066 33.8 3.4 58 6-71 271-329 (333)
165 COG5109 Uncharacterized conser 39.4 19 0.00042 34.8 1.9 36 116-158 334-369 (396)
166 COG0068 HypF Hydrogenase matur 39.2 15 0.00032 39.4 1.2 42 118-159 101-162 (750)
167 KOG1812 Predicted E3 ubiquitin 38.0 16 0.00035 36.5 1.3 37 118-159 306-342 (384)
168 KOG3842 Adaptor protein Pellin 37.9 43 0.00093 32.5 4.0 14 192-205 401-414 (429)
169 KOG2068 MOT2 transcription fac 36.9 28 0.0006 33.9 2.6 49 119-205 250-298 (327)
170 smart00647 IBR In Between Ring 36.8 27 0.00059 24.6 2.0 39 118-158 18-58 (64)
171 KOG0428 Non-canonical ubiquiti 36.1 42 0.00092 31.3 3.5 25 51-75 60-84 (314)
172 KOG0802 E3 ubiquitin ligase [P 35.9 19 0.00041 37.7 1.4 46 116-207 477-522 (543)
173 smart00734 ZnF_Rad18 Rad18-lik 35.2 26 0.00056 20.9 1.4 15 195-209 2-16 (26)
174 PF00628 PHD: PHD-finger; Int 34.8 17 0.00036 24.8 0.6 31 121-158 2-32 (51)
175 KOG3113 Uncharacterized conser 34.7 27 0.00058 32.8 2.0 52 118-209 111-162 (293)
176 KOG1814 Predicted E3 ubiquitin 34.7 49 0.0011 33.3 3.9 57 94-157 345-403 (445)
177 PF04216 FdhE: Protein involve 34.3 15 0.00032 35.1 0.3 33 118-158 172-207 (290)
178 KOG4684 Uncharacterized conser 33.7 34 0.00073 31.4 2.5 36 123-158 150-185 (275)
179 PF02318 FYVE_2: FYVE-type zin 33.6 71 0.0015 26.2 4.3 34 117-155 53-86 (118)
180 PRK02289 4-oxalocrotonate taut 33.6 62 0.0013 23.0 3.5 33 65-97 2-34 (60)
181 PF10571 UPF0547: Uncharacteri 32.3 33 0.00073 20.6 1.5 11 120-130 2-12 (26)
182 PRK02220 4-oxalocrotonate taut 32.0 70 0.0015 22.4 3.5 33 65-97 2-34 (61)
183 PF13719 zinc_ribbon_5: zinc-r 31.9 21 0.00045 23.2 0.6 33 119-151 3-36 (37)
184 KOG4443 Putative transcription 31.3 32 0.0007 36.4 2.2 21 143-163 38-58 (694)
185 PF09606 Med15: ARC105 or Med1 30.2 17 0.00037 39.7 0.0 19 52-70 718-736 (799)
186 KOG0426 Ubiquitin-protein liga 30.1 35 0.00076 28.8 1.8 21 50-70 54-74 (165)
187 PF07227 DUF1423: Protein of u 30.0 28 0.00061 35.3 1.5 36 119-158 129-164 (446)
188 KOG2807 RNA polymerase II tran 29.3 35 0.00075 33.3 1.9 32 117-155 329-360 (378)
189 KOG3357 Uncharacterized conser 28.9 48 0.001 27.9 2.4 27 48-74 78-104 (167)
190 PF09765 WD-3: WD-repeat regio 28.6 2.3E+02 0.0049 27.3 7.4 25 49-73 138-162 (291)
191 KOG1140 N-end rule pathway, re 28.5 39 0.00085 39.8 2.4 21 144-164 1149-1169(1738)
192 PRK01343 zinc-binding protein; 28.4 41 0.00089 24.3 1.7 13 193-205 8-20 (57)
193 PF13832 zf-HC5HC2H_2: PHD-zin 27.2 56 0.0012 26.1 2.6 31 118-157 55-87 (110)
194 KOG0801 Predicted E3 ubiquitin 27.1 27 0.00059 30.6 0.7 18 193-210 137-154 (205)
195 PRK00418 DNA gyrase inhibitor; 26.5 34 0.00073 25.1 1.0 13 193-205 5-17 (62)
196 PRK00745 4-oxalocrotonate taut 26.2 1E+02 0.0022 21.6 3.6 34 65-98 2-35 (62)
197 KOG2979 Protein involved in DN 26.1 59 0.0013 30.6 2.7 34 118-160 176-209 (262)
198 COG0675 Transposase and inacti 25.9 70 0.0015 30.1 3.4 33 117-158 308-340 (364)
199 smart00250 PLEC Plectin repeat 25.7 22 0.00048 23.0 -0.1 20 252-271 3-22 (38)
200 KOG2789 Putative Zn-finger pro 25.6 1.2E+02 0.0026 30.5 4.8 34 116-157 264-297 (482)
201 KOG0396 Uncharacterized conser 25.5 5.7E+02 0.012 25.5 9.4 76 50-130 231-316 (389)
202 COG1645 Uncharacterized Zn-fin 25.3 32 0.00068 29.1 0.7 12 119-130 29-40 (131)
203 KOG1245 Chromatin remodeling c 24.8 47 0.001 38.8 2.3 41 113-160 1103-1143(1404)
204 KOG3842 Adaptor protein Pellin 24.6 78 0.0017 30.8 3.3 40 112-152 284-328 (429)
205 PF14462 Prok-E2_E: Prokaryoti 24.6 73 0.0016 26.6 2.8 24 48-71 42-65 (122)
206 KOG2169 Zn-finger transcriptio 24.3 46 0.00099 35.6 1.9 18 193-210 344-361 (636)
207 TIGR02652 conserved hypothetic 24.0 32 0.00069 29.4 0.5 15 192-206 7-21 (163)
208 TIGR00013 taut 4-oxalocrotonat 24.0 1.2E+02 0.0026 21.3 3.6 34 65-98 1-35 (63)
209 PF09654 DUF2396: Protein of u 24.0 32 0.0007 29.4 0.6 14 193-206 5-18 (161)
210 KOG4218 Nuclear hormone recept 23.9 59 0.0013 32.0 2.4 11 193-203 66-76 (475)
211 COG3492 Uncharacterized protei 23.7 41 0.00089 26.6 1.1 11 150-160 43-53 (104)
212 KOG3299 Uncharacterized conser 23.6 70 0.0015 29.1 2.7 55 59-115 2-56 (206)
213 PLN02189 cellulose synthase 23.6 63 0.0014 36.4 2.8 35 118-155 34-68 (1040)
214 KOG0896 Ubiquitin-conjugating 22.8 55 0.0012 27.8 1.7 21 50-70 58-78 (138)
215 PF03884 DUF329: Domain of unk 22.4 23 0.0005 25.5 -0.5 12 195-206 3-14 (57)
216 TIGR01562 FdhE formate dehydro 22.2 23 0.0005 34.3 -0.7 10 118-127 184-193 (305)
217 cd00491 4Oxalocrotonate_Tautom 21.8 1.4E+02 0.0031 20.4 3.5 33 65-97 1-33 (58)
218 PF09237 GAGA: GAGA factor; I 21.8 48 0.001 23.4 1.0 15 192-206 22-36 (54)
219 KOG3579 Predicted E3 ubiquitin 21.8 44 0.00095 32.0 1.0 32 119-160 269-304 (352)
220 smart00132 LIM Zinc-binding do 21.1 64 0.0014 19.8 1.5 27 121-155 2-28 (39)
221 PF09986 DUF2225: Uncharacteri 20.6 40 0.00086 30.8 0.5 17 193-209 4-20 (214)
222 COG4357 Zinc finger domain con 20.2 71 0.0015 25.6 1.8 14 194-207 80-93 (105)
223 TIGR00622 ssl1 transcription f 20.1 1.1E+02 0.0025 25.1 3.0 41 118-158 55-99 (112)
224 PF01361 Tautomerase: Tautomer 20.0 1.2E+02 0.0027 21.1 2.9 34 65-98 1-34 (60)
No 1
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=100.00 E-value=6.9e-41 Score=307.31 Aligned_cols=231 Identities=21% Similarity=0.406 Sum_probs=179.9
Q ss_pred HHHHHHHhhcCCCceeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHHH
Q 018975 8 MELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCI 87 (348)
Q Consensus 8 ~ElEAL~sIY~dd~~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L 87 (348)
.|++||.+|+..- .+-+..+..++++++|.++++.++++|+|+|.+..+++||.++|.|.++++|||++.++..|++.+
T Consensus 6 ~e~~~ld~i~~~~-~~~s~~~~~i~~t~hpit~eedesqyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~ 84 (368)
T KOG4445|consen 6 GEIEALDSIWDGV-HVESKLEASIRYTKHPITSEEDESQYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQI 84 (368)
T ss_pred hhhHhhhhHhhcc-CCCCCChhhheeeecccccccccceeEEEEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHH
Confidence 4677777776642 233445678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcc
Q 018975 88 QDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIE 167 (348)
Q Consensus 88 ~~~~ee~~G~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~ 167 (348)
.+++++++|++|+|+||+..+++|+++|.+.++|+||||+|...+. |++ |.||||||++||+||++++.+++.
T Consensus 85 ~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~------ft~-T~C~Hy~H~~ClaRyl~~~~~~lr 157 (368)
T KOG4445|consen 85 QEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPA------FTV-TACDHYMHFACLARYLTECLTGLR 157 (368)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCc------eee-ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987664 886 999999999999999998765442
Q ss_pred cccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccchHHHHhhhcCCCCCCCCCCCCCCccccccCChhH--HHH
Q 018975 168 TDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSE--NIR 245 (348)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d~~~~~~l~~~~~~~~~s~~~e~~~~~~~~~~~~~--~~~ 245 (348)
.+..+++++.+..+.....+|||||+.|-.+ .. .+..+.- . +.-+ .+.+...+ +..
T Consensus 158 ---------qe~q~~~~~~qh~~~~~eavcpVcre~i~~e-~~---slk~a~~---P--t~~l----~~~~~~~eslrq~ 215 (368)
T KOG4445|consen 158 ---------QEIQDAQKERQHMKEQVEAVCPVCRERIKIE-EN---SLKIAEF---P--TYPM----ELYQPSAESLRQQ 215 (368)
T ss_pred ---------HHHHHHHHHHHHhhhhHhhhhhHhhhhcccc-cc---ceeccCC---C--cccc----ccCcccHHHHHHH
Confidence 2334444444445556677899999998442 11 1111000 0 0000 12222233 444
Q ss_pred HHHHHHHHHHHHhcCCccccCccc
Q 018975 246 RQKFEAILKLQEENSGLIEPKRDL 269 (348)
Q Consensus 246 q~~~~~i~~~Q~~~ggiId~~~~~ 269 (348)
++++ .+|.+||++|||||.+++.
T Consensus 216 ~~r~-~ly~~qk~rg~iid~~ae~ 238 (368)
T KOG4445|consen 216 EERK-RLYQRQQERGGIIDLEAER 238 (368)
T ss_pred HHHH-HHHHHHhhcCceEeeeccC
Confidence 4566 9999999999999998765
No 2
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=99.70 E-value=1.5e-16 Score=128.89 Aligned_cols=104 Identities=26% Similarity=0.513 Sum_probs=91.4
Q ss_pred HHHHHHhhcCCCceeccCCCC--eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHH
Q 018975 9 ELEAVQAVYGDECVVLDSYPP--HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISC 86 (348)
Q Consensus 9 ElEAL~sIY~dd~~v~~~~~~--~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~ 86 (348)
|+|||+|||++++..+...+. .|.|++.+... +.....+.+.|.|.+|++||..+|.|.+.+..||+......|.+.
T Consensus 1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~ 79 (107)
T smart00591 1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSD-EGEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKK 79 (107)
T ss_pred ChHHHHhhccceeEEecCCCCccEEEEEEecCCC-CCCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 799999999999887776555 68888866543 234567899999999999999999999988889999999999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHhhh
Q 018975 87 IQDKAHELTSCLMLVALCEEAVAKLSA 113 (348)
Q Consensus 87 L~~~~ee~~G~~ml~elie~~kE~Lte 113 (348)
+...+++..|++|+|.+++++++++.+
T Consensus 80 l~~~~~e~~g~~~if~~v~~~~e~l~~ 106 (107)
T smart00591 80 LEEIAEENLGEVMIFELVEKLQEFLSE 106 (107)
T ss_pred HHHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence 999999999999999999999999864
No 3
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=99.67 E-value=1.6e-16 Score=129.72 Aligned_cols=110 Identities=25% Similarity=0.432 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhhcCCCce-eccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHH
Q 018975 2 AEEEVAMELEAVQAVYGDECV-VLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQ 80 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sIY~dd~~-v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i 80 (348)
..|+|++||+||+|||++++. .....+..+.+.+.+.........++.+.|.|.+|++||..+|.|.+....++.....
T Consensus 2 ~~e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~~~~~~~ 81 (113)
T PF05773_consen 2 CEEQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKNSRNEQI 81 (113)
T ss_dssp HHHHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESSSHCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCCCCHHHH
Confidence 368899999999999999982 2334456788888654444455678899999999999999999999988877776889
Q ss_pred HHHHHHHHHHHHHhc-CCchhhHHHHHHHHHh
Q 018975 81 KHLISCIQDKAHELT-SCLMLVALCEEAVAKL 111 (348)
Q Consensus 81 ~~L~~~L~~~~ee~~-G~~ml~elie~~kE~L 111 (348)
..|.+.|...+++.. |++|+|++++++++++
T Consensus 82 ~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~ 113 (113)
T PF05773_consen 82 EKLNKELEQIAEENRQGEPCIFQIIEWLQENL 113 (113)
T ss_dssp HHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence 999999999999999 9999999999999875
No 4
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=99.61 E-value=5.6e-15 Score=131.53 Aligned_cols=111 Identities=24% Similarity=0.405 Sum_probs=91.8
Q ss_pred CC-HHHHHHHHHHHHhhcCCCceec-cCCCCeeEEEEecCCCCCCCCcce-EEEEEEEcCCCCCCCCCcccccCCCCCCH
Q 018975 1 MA-EEEVAMELEAVQAVYGDECVVL-DSYPPHLHLRIKPRTADVSSQQFV-EAVIGIRASPKYPEHPPRIDLIESKGLDD 77 (348)
Q Consensus 1 m~-~Ee~~~ElEAL~sIY~dd~~v~-~~~~~~~~i~i~p~~~~~~~~~~v-~i~L~i~lp~~YP~~~P~i~i~~~~GL~~ 77 (348)
|+ .|+|+.|+|||+|||+|+++.+ ...|+.|.|.|.+..+.. ..+. .+.|.|.++++||+.+|.|.+...+++.+
T Consensus 1 Ms~~EeQe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~--d~~~~~~~l~~s~tEnYPDe~Pli~~~~~~~~~~ 78 (215)
T KOG4018|consen 1 MSQYEEQEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGEN--DEPKGSFILVFSLTENYPDEAPLIEAFENENLED 78 (215)
T ss_pred CCcHHHHHHHHHHHHHhccchhhhhhccCCccceeeeecccccC--CCccccEEEEEEccCCCCCCCcceeccccccccH
Confidence 55 3789999999999999999444 556667777776654332 1233 79999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhh
Q 018975 78 QRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSA 113 (348)
Q Consensus 78 ~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte 113 (348)
..+..++..+...+++++||.|+|.|++.+++.+.+
T Consensus 79 ~~i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e 114 (215)
T KOG4018|consen 79 AEIEGILEKLQQEAEENLGMAMIFTLVSSAKEELNE 114 (215)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999666665543
No 5
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.4e-13 Score=130.07 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHhhcCCC-ceeccC-C----------CCeeEEEEecCCCC----CCC-------CcceEEEEEEEcC
Q 018975 1 MAEEEVAMELEAVQAVYGDE-CVVLDS-Y----------PPHLHLRIKPRTAD----VSS-------QQFVEAVIGIRAS 57 (348)
Q Consensus 1 m~~Ee~~~ElEAL~sIY~dd-~~v~~~-~----------~~~~~i~i~p~~~~----~~~-------~~~v~i~L~i~lp 57 (348)
|+.+.|++||+||++||+++ |.-.+. . +..|.+.+.|.... +.. .....+.|.|.||
T Consensus 4 dn~~~qedEL~AL~siy~e~~~~~~~~~~~~~~~ir~ni~v~f~~~~~~~vnie~~s~~~~~f~~~~~~lPpivlkf~LP 83 (445)
T KOG1814|consen 4 DNRELQEDELEALESIYPENEFRKVSYWEDGEFEIRLNIEVNFEILYSPKVNIEGTSDSMDLFSLPLDHLPPIVLKFHLP 83 (445)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccceeEeeeeccceeecccccccccccccccccccccccCCCeeeeeecC
Confidence 34577999999999999976 222211 1 11223333332211 111 1345689999999
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH----H-----------------------
Q 018975 58 PKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVA----K----------------------- 110 (348)
Q Consensus 58 ~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE----~----------------------- 110 (348)
+.||..+|+.....+.||+.+++..|... +..|....+++.+++.+ +
T Consensus 84 ~~YPs~spP~f~l~s~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~l~~i~~~~lki~~~~~~~~~~~~ 157 (445)
T KOG1814|consen 84 NDYPSVSPPKFELKSYWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISILNLIAPFELKIISQKEFPALIRQ 157 (445)
T ss_pred CccccCCCCceeeehcccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHHHHhcccceeccchhhhccccccc
Confidence 99999877777778889999987766664 11111111111111110 0
Q ss_pred -------------------hhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 111 -------------------LSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 111 -------------------Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+........+|.||++.+...+. |. .++|.|+||..|+..|+.
T Consensus 158 ~~~~~sl~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~~c------~~-~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 158 GESIDSLKKEILQFDEEATLEKFVNSLFDCCICFEEQMGQHC------FK-FLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHHhhcccceeeehhhcCcce------ee-ecccchHHHHHHHHHHHH
Confidence 11112445799999998764332 55 499999999999999987
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.26 E-value=1.5e-12 Score=89.27 Aligned_cols=35 Identities=34% Similarity=0.916 Sum_probs=28.7
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
++|+||++.|..++. ++ .++|+|.||..||..|++
T Consensus 1 d~C~IC~~~~~~~~~------~~-~l~C~H~fh~~Ci~~~~~ 35 (44)
T PF13639_consen 1 DECPICLEEFEDGEK------VV-KLPCGHVFHRSCIKEWLK 35 (44)
T ss_dssp -CETTTTCBHHTTSC------EE-EETTSEEEEHHHHHHHHH
T ss_pred CCCcCCChhhcCCCe------EE-EccCCCeeCHHHHHHHHH
Confidence 379999999976543 33 378999999999999986
No 7
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=99.23 E-value=3.6e-11 Score=125.25 Aligned_cols=122 Identities=19% Similarity=0.373 Sum_probs=101.3
Q ss_pred EEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCCCCCCCCCcccccc
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPL 128 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f 128 (348)
.+.+-|.+|.+||...-.+.-....|.++..+..++..-+.......|. +.++.+..+.++.....+..+|+||..-+
T Consensus 1402 kle~~ikiPs~YPl~NvQVeGi~rVg~sE~~wkswI~~~q~~~~~~ngs--~~D~l~l~kkNi~~~fsG~eECaICYsvL 1479 (1525)
T COG5219 1402 KLEALIKIPSGYPLKNVQVEGIKRVGTSEIGWKSWINLRQNEMIKKNGS--FMDLLGLWKKNIDEKFSGHEECAICYSVL 1479 (1525)
T ss_pred EEEEEEecCCCCCcccceeccceeccccHHHHHHHHHHHHHHHHhccch--HHHHHHHHHhhhhhhcCCcchhhHHHHHH
Confidence 5788999999999998888877888999999999999888877777776 55666777777777667788999999887
Q ss_pred ccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccC
Q 018975 129 FRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFH 205 (348)
Q Consensus 129 ~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~ 205 (348)
. -+++++|-.++-.|.|-||..||.+|+. +....+||+||-.|+
T Consensus 1480 ~---~vdr~lPskrC~TCknKFH~~CLyKWf~------------------------------Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1480 D---MVDRSLPSKRCATCKNKFHTRCLYKWFA------------------------------SSARSNCPLCRSEIT 1523 (1525)
T ss_pred H---HHhccCCccccchhhhhhhHHHHHHHHH------------------------------hcCCCCCCccccccc
Confidence 5 3556788888889999999999999986 135678999997764
No 8
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.02 E-value=1.7e-10 Score=87.79 Aligned_cols=44 Identities=30% Similarity=0.642 Sum_probs=30.6
Q ss_pred CCCCCCCccccccccCCC----CccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDK----NVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~----~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
...+.|+||+..|.+.-. .....+++ ...|+|.||.+||.+|++
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~-~~~C~H~FH~~Ci~~Wl~ 64 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIV-WGPCGHIFHFHCISQWLK 64 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EE-EETTSEEEEHHHHHHHHT
T ss_pred CcCCcccccChhhhChhhhhcCCccccceE-ecccCCCEEHHHHHHHHh
Confidence 345679999999943210 01224554 478999999999999985
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.98 E-value=3.8e-10 Score=104.17 Aligned_cols=55 Identities=36% Similarity=0.775 Sum_probs=40.7
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...+|+||++.|........ .+..+++|+|.||..||.+|+. .+.+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~--~~~vl~~C~H~FC~~CI~~Wl~--------------------------------~~~t 218 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNM--YFGILSNCNHVFCIECIDIWKK--------------------------------EKNT 218 (238)
T ss_pred CCCCCccCCcccccCccccc--cceecCCCCCcccHHHHHHHHh--------------------------------cCCC
Confidence 46799999999865331110 1223479999999999999975 4568
Q ss_pred CCCCCcccC
Q 018975 197 CPVCRKVFH 205 (348)
Q Consensus 197 CPvCR~~~~ 205 (348)
||+||.++.
T Consensus 219 CPlCR~~~~ 227 (238)
T PHA02929 219 CPVCRTPFI 227 (238)
T ss_pred CCCCCCEee
Confidence 999999884
No 10
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.9e-10 Score=107.28 Aligned_cols=50 Identities=30% Similarity=0.885 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
.+|+||+..|...|. ++ .++|.|.||..|+..|+. ..+..||
T Consensus 324 veCaICms~fiK~d~------~~-vlPC~H~FH~~Cv~kW~~-------------------------------~y~~~CP 365 (374)
T COG5540 324 VECAICMSNFIKNDR------LR-VLPCDHRFHVGCVDKWLL-------------------------------GYSNKCP 365 (374)
T ss_pred ceEEEEhhhhcccce------EE-EeccCceechhHHHHHHh-------------------------------hhcccCC
Confidence 699999999987665 33 599999999999999987 4667899
Q ss_pred CCCcccCc
Q 018975 199 VCRKVFHV 206 (348)
Q Consensus 199 vCR~~~~~ 206 (348)
+||.+++.
T Consensus 366 vCrt~iPP 373 (374)
T COG5540 366 VCRTAIPP 373 (374)
T ss_pred ccCCCCCC
Confidence 99999864
No 11
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.2e-10 Score=110.33 Aligned_cols=50 Identities=32% Similarity=0.808 Sum_probs=42.2
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+|||+.|..+|+. +.++|.|.||..||+.|+. ..+..||
T Consensus 230 ~~CaIClEdY~~Gdkl-------RiLPC~H~FH~~CIDpWL~-------------------------------~~r~~CP 271 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKL-------RILPCSHKFHVNCIDPWLT-------------------------------QTRTFCP 271 (348)
T ss_pred ceEEEeecccccCCee-------eEecCCCchhhccchhhHh-------------------------------hcCccCC
Confidence 4899999999999875 3589999999999999985 3456799
Q ss_pred CCCcccCc
Q 018975 199 VCRKVFHV 206 (348)
Q Consensus 199 vCR~~~~~ 206 (348)
+|+..+..
T Consensus 272 vCK~di~~ 279 (348)
T KOG4628|consen 272 VCKRDIRT 279 (348)
T ss_pred CCCCcCCC
Confidence 99987744
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.6e-10 Score=98.21 Aligned_cols=56 Identities=34% Similarity=0.680 Sum_probs=45.8
Q ss_pred CCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCC
Q 018975 115 NHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNM 194 (348)
Q Consensus 115 n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (348)
+.+...|||||..|.+.. ||. |.|||+||+.||..-++ ..
T Consensus 128 ~~~~~~CPiCl~~~sek~------~vs--TkCGHvFC~~Cik~alk--------------------------------~~ 167 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV------PVS--TKCGHVFCSQCIKDALK--------------------------------NT 167 (187)
T ss_pred cccccCCCceecchhhcc------ccc--cccchhHHHHHHHHHHH--------------------------------hC
Confidence 356689999999997632 444 89999999999999875 56
Q ss_pred CCCCCCCcccCccchH
Q 018975 195 GTCPVCRKVFHVKDLE 210 (348)
Q Consensus 195 ~~CPvCR~~~~~~d~~ 210 (348)
..||+||+.|+.+++-
T Consensus 168 ~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 168 NKCPTCRKKITHKQFH 183 (187)
T ss_pred CCCCCcccccchhhhe
Confidence 7899999999888654
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=1.6e-09 Score=83.84 Aligned_cols=58 Identities=31% Similarity=0.737 Sum_probs=41.3
Q ss_pred CCCCCccccccccCCCC-----ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKN-----VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG 192 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~-----~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (348)
+..|+||...|.. .-. +...|++. -.|.|.||.+||.+|++ .+ .
T Consensus 21 dd~CgICr~~fdg-~Cp~Ck~Pgd~Cplv~-g~C~H~FH~hCI~kWl~-~~----------------------------~ 69 (85)
T PF12861_consen 21 DDVCGICRMPFDG-CCPDCKFPGDDCPLVW-GKCSHNFHMHCILKWLS-TQ----------------------------S 69 (85)
T ss_pred CCceeeEeccccc-CCCCccCCCCCCceee-ccCccHHHHHHHHHHHc-cc----------------------------c
Confidence 5788888888753 211 22346663 57999999999999986 11 2
Q ss_pred CCCCCCCCCcccCc
Q 018975 193 NMGTCPVCRKVFHV 206 (348)
Q Consensus 193 ~~~~CPvCR~~~~~ 206 (348)
.+..||+||.++..
T Consensus 70 ~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 70 SKGQCPMCRQPWKF 83 (85)
T ss_pred CCCCCCCcCCeeee
Confidence 45789999998744
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.2e-09 Score=100.11 Aligned_cols=43 Identities=28% Similarity=0.828 Sum_probs=31.4
Q ss_pred CCCCCCCccccccccCC-CCc----cccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKD-KNV----EVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~-~~~----~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..+..|.||++++...+ +.. ..-| |+++|+|+||.+||..|++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~p--KrLpCGHilHl~CLknW~E 332 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTP--KRLPCGHILHLHCLKNWLE 332 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCc--ccccccceeeHHHHHHHHH
Confidence 35789999999954433 110 1113 6799999999999999986
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.83 E-value=1.3e-09 Score=96.83 Aligned_cols=71 Identities=27% Similarity=0.456 Sum_probs=46.0
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...+|+||++.+.+ |. +|.|+|.||..||..|+....... +.... .........
T Consensus 17 ~~~~CpICld~~~d--------PV--vT~CGH~FC~~CI~~wl~~s~~s~-----~~~~~-----------~~~~k~~~~ 70 (193)
T PLN03208 17 GDFDCNICLDQVRD--------PV--VTLCGHLFCWPCIHKWTYASNNSR-----QRVDQ-----------YDHKREPPK 70 (193)
T ss_pred CccCCccCCCcCCC--------cE--EcCCCchhHHHHHHHHHHhccccc-----ccccc-----------ccccCCCCc
Confidence 35799999998853 43 389999999999999975211100 00000 000124568
Q ss_pred CCCCCcccCccchHHHH
Q 018975 197 CPVCRKVFHVKDLEHVL 213 (348)
Q Consensus 197 CPvCR~~~~~~d~~~~~ 213 (348)
||+||.++...++..++
T Consensus 71 CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 71 CPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCCCCcCChhcEEEee
Confidence 99999999887665444
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.3e-09 Score=108.28 Aligned_cols=58 Identities=36% Similarity=0.798 Sum_probs=46.4
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|||||++.. +..+|.|+|.||..||.+||++... .....|
T Consensus 186 ~~~CPICL~~~~----------~p~~t~CGHiFC~~CiLqy~~~s~~---------------------------~~~~~C 228 (513)
T KOG2164|consen 186 DMQCPICLEPPS----------VPVRTNCGHIFCGPCILQYWNYSAI---------------------------KGPCSC 228 (513)
T ss_pred CCcCCcccCCCC----------cccccccCceeeHHHHHHHHhhhcc---------------------------cCCccC
Confidence 689999999874 3456999999999999999984311 245689
Q ss_pred CCCCcccCccchHHH
Q 018975 198 PVCRKVFHVKDLEHV 212 (348)
Q Consensus 198 PvCR~~~~~~d~~~~ 212 (348)
|+||..|+.+|+..+
T Consensus 229 PiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 229 PICRSTITLKDLLPV 243 (513)
T ss_pred Cchhhhccccceeee
Confidence 999999999887644
No 17
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6e-09 Score=97.03 Aligned_cols=53 Identities=30% Similarity=0.741 Sum_probs=41.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
..+..|.|||+.-.. | -.|+|+|.||..||..|.. .+.
T Consensus 237 ~a~~kC~LCLe~~~~--------p--SaTpCGHiFCWsCI~~w~~--------------------------------ek~ 274 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN--------P--SATPCGHIFCWSCILEWCS--------------------------------EKA 274 (293)
T ss_pred CCCCceEEEecCCCC--------C--CcCcCcchHHHHHHHHHHc--------------------------------ccc
Confidence 345789999988643 2 2499999999999999975 344
Q ss_pred CCCCCCcccCccchH
Q 018975 196 TCPVCRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPvCR~~~~~~d~~ 210 (348)
-||+||++++..++.
T Consensus 275 eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 275 ECPLCREKFQPSKVI 289 (293)
T ss_pred CCCcccccCCCccee
Confidence 599999999876653
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.67 E-value=2e-08 Score=67.58 Aligned_cols=32 Identities=38% Similarity=1.043 Sum_probs=25.3
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+|+||++.+.. ++. .++|+|.||..|+..|+.
T Consensus 1 ~C~iC~~~~~~--------~~~-~~~C~H~~c~~C~~~~~~ 32 (45)
T cd00162 1 ECPICLEEFRE--------PVV-LLPCGHVFCRSCIDKWLK 32 (45)
T ss_pred CCCcCchhhhC--------ceE-ecCCCChhcHHHHHHHHH
Confidence 59999999822 232 356999999999999976
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.62 E-value=1.1e-07 Score=85.84 Aligned_cols=63 Identities=29% Similarity=0.603 Sum_probs=41.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
..+..|+|||+......... .--|..+.+|.|.||..||..|.+..+. .+...
T Consensus 168 SkE~eCgICmE~I~eK~~~~-eRrFGIL~~CnHsFCl~CIr~Wr~~r~~--------------------------~~~~r 220 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLEN-DRYFGLLDSCNHIFCITCINIWHRTRRE--------------------------TGASD 220 (242)
T ss_pred cCCCCCccCccccccccccc-cccccccCCCCchHHHHHHHHHHHhccc--------------------------cCcCC
Confidence 34689999999875421100 0014456799999999999999651110 12456
Q ss_pred CCCCCCcccC
Q 018975 196 TCPVCRKVFH 205 (348)
Q Consensus 196 ~CPvCR~~~~ 205 (348)
.||+||..+.
T Consensus 221 sCPiCR~~f~ 230 (242)
T PHA02926 221 NCPICRTRFR 230 (242)
T ss_pred cCCCCcceee
Confidence 7999999874
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.61 E-value=3.2e-08 Score=72.51 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..||||+..+.+ |.+ ++|+|.|+..||..|+. ....||
T Consensus 2 ~~Cpi~~~~~~~--------Pv~--~~~G~v~~~~~i~~~~~--------------------------------~~~~cP 39 (63)
T smart00504 2 FLCPISLEVMKD--------PVI--LPSGQTYERRAIEKWLL--------------------------------SHGTDP 39 (63)
T ss_pred cCCcCCCCcCCC--------CEE--CCCCCEEeHHHHHHHHH--------------------------------HCCCCC
Confidence 479999999864 544 79999999999999986 246899
Q ss_pred CCCcccCccchHHHH
Q 018975 199 VCRKVFHVKDLEHVL 213 (348)
Q Consensus 199 vCR~~~~~~d~~~~~ 213 (348)
+|++++..+|+..+.
T Consensus 40 ~~~~~~~~~~l~~~~ 54 (63)
T smart00504 40 VTGQPLTHEDLIPNL 54 (63)
T ss_pred CCcCCCChhhceeCH
Confidence 999999877765443
No 21
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.3e-08 Score=92.24 Aligned_cols=58 Identities=26% Similarity=0.566 Sum_probs=43.7
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...+|.|||+.-.+ |. +|.|+|.||.-||.+|+. .. .....
T Consensus 46 ~~FdCNICLd~akd--------PV--vTlCGHLFCWpClyqWl~---~~--------------------------~~~~~ 86 (230)
T KOG0823|consen 46 GFFDCNICLDLAKD--------PV--VTLCGHLFCWPCLYQWLQ---TR--------------------------PNSKE 86 (230)
T ss_pred CceeeeeeccccCC--------CE--EeecccceehHHHHHHHh---hc--------------------------CCCee
Confidence 45799999987543 44 489999999999999975 21 24567
Q ss_pred CCCCCcccCccchHHHH
Q 018975 197 CPVCRKVFHVKDLEHVL 213 (348)
Q Consensus 197 CPvCR~~~~~~d~~~~~ 213 (348)
||||+..+..+.+-.+|
T Consensus 87 cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 87 CPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCccccccccceEEeee
Confidence 99999999776544333
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.59 E-value=2.5e-08 Score=67.66 Aligned_cols=30 Identities=37% Similarity=0.996 Sum_probs=25.1
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
||||++.|.+ |.+ ++|+|.|+..||.+||+
T Consensus 1 CpiC~~~~~~--------Pv~--l~CGH~FC~~Cl~~~~~ 30 (42)
T PF15227_consen 1 CPICLDLFKD--------PVS--LPCGHSFCRSCLERLWK 30 (42)
T ss_dssp ETTTTSB-SS--------EEE---SSSSEEEHHHHHHHHC
T ss_pred CCccchhhCC--------ccc--cCCcCHHHHHHHHHHHH
Confidence 8999999975 655 89999999999999985
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.8e-08 Score=75.56 Aligned_cols=59 Identities=32% Similarity=0.824 Sum_probs=42.5
Q ss_pred CCCCCCCccccccccCCCC-----ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKN-----VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPI 190 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~-----~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (348)
.++..|.||--+|.. -.. +-.+|++- -.|.|.||.+||.+|++ .+
T Consensus 18 ~~~e~CGiCRm~Fdg-~Cp~Ck~PgDdCPLv~-G~C~h~fh~hCI~~wl~-~~--------------------------- 67 (84)
T KOG1493|consen 18 APDETCGICRMPFDG-CCPDCKLPGDDCPLVW-GYCLHAFHAHCILKWLN-TP--------------------------- 67 (84)
T ss_pred CCCCccceEecccCC-cCCCCcCCCCCCccHH-HHHHHHHHHHHHHHHhc-Cc---------------------------
Confidence 456789999888853 111 12246653 47999999999999987 21
Q ss_pred CCCCCCCCCCCcccC
Q 018975 191 DGNMGTCPVCRKVFH 205 (348)
Q Consensus 191 ~~~~~~CPvCR~~~~ 205 (348)
..++.||+||..+.
T Consensus 68 -tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 68 -TSQGQCPMCRQTWQ 81 (84)
T ss_pred -cccccCCcchheeE
Confidence 35689999999774
No 24
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.51 E-value=5.5e-08 Score=64.77 Aligned_cols=31 Identities=39% Similarity=0.944 Sum_probs=25.5
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
|+||++.+.+ |++ .++|+|.|+..|+.+|+.
T Consensus 1 C~iC~~~~~~--------~~~-~~~CGH~fC~~C~~~~~~ 31 (39)
T PF13923_consen 1 CPICLDELRD--------PVV-VTPCGHSFCKECIEKYLE 31 (39)
T ss_dssp ETTTTSB-SS--------EEE-ECTTSEEEEHHHHHHHHH
T ss_pred CCCCCCcccC--------cCE-ECCCCCchhHHHHHHHHH
Confidence 8999998864 443 489999999999999986
No 25
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.50 E-value=7.2e-08 Score=67.77 Aligned_cols=46 Identities=33% Similarity=0.788 Sum_probs=35.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
+..|+||+..+.. . .+++|+|. |+..|+.+|+. ....
T Consensus 2 ~~~C~iC~~~~~~---------~-~~~pCgH~~~C~~C~~~~~~--------------------------------~~~~ 39 (50)
T PF13920_consen 2 DEECPICFENPRD---------V-VLLPCGHLCFCEECAERLLK--------------------------------RKKK 39 (50)
T ss_dssp HSB-TTTSSSBSS---------E-EEETTCEEEEEHHHHHHHHH--------------------------------TTSB
T ss_pred cCCCccCCccCCc---------e-EEeCCCChHHHHHHhHHhcc--------------------------------cCCC
Confidence 3689999998642 2 24799999 99999999975 4578
Q ss_pred CCCCCcccC
Q 018975 197 CPVCRKVFH 205 (348)
Q Consensus 197 CPvCR~~~~ 205 (348)
||+||++|.
T Consensus 40 CP~Cr~~i~ 48 (50)
T PF13920_consen 40 CPICRQPIE 48 (50)
T ss_dssp BTTTTBB-S
T ss_pred CCcCChhhc
Confidence 999999885
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.3e-08 Score=96.79 Aligned_cols=59 Identities=29% Similarity=0.763 Sum_probs=42.0
Q ss_pred CCCCCCCccccccccCCCC-cccc-------CcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccC
Q 018975 116 HPDGDCPLCLYPLFRKDKN-VEVL-------PFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDML 187 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~-~~~~-------p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (348)
....+|+||+.++.--... ++.. -+| +|+|.|.||..||.+|.+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm-~tPC~HifH~~CL~~WMd--------------------------- 620 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYM-LTPCHHIFHRQCLLQWMD--------------------------- 620 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhcccc-ccchHHHHHHHHHHHHHh---------------------------
Confidence 4456999999886431111 1111 145 589999999999999986
Q ss_pred CCCCCCCCCCCCCCcccCc
Q 018975 188 GPIDGNMGTCPVCRKVFHV 206 (348)
Q Consensus 188 ~~~~~~~~~CPvCR~~~~~ 206 (348)
..+..||+||.+++.
T Consensus 621 ----~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 621 ----TYKLICPVCRCPLPP 635 (636)
T ss_pred ----hhcccCCccCCCCCC
Confidence 355689999999863
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=9.1e-08 Score=94.47 Aligned_cols=51 Identities=33% Similarity=0.600 Sum_probs=41.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |++ ++|+|.||..||..||. ....
T Consensus 25 ~~l~C~IC~d~~~~--------Pvi--tpCgH~FCs~CI~~~l~--------------------------------~~~~ 62 (397)
T TIGR00599 25 TSLRCHICKDFFDV--------PVL--TSCSHTFCSLCIRRCLS--------------------------------NQPK 62 (397)
T ss_pred cccCCCcCchhhhC--------ccC--CCCCCchhHHHHHHHHh--------------------------------CCCC
Confidence 45799999998854 443 89999999999999975 3357
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||..+....+
T Consensus 63 CP~Cr~~~~~~~L 75 (397)
T TIGR00599 63 CPLCRAEDQESKL 75 (397)
T ss_pred CCCCCCccccccC
Confidence 9999998876544
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.42 E-value=1.4e-07 Score=71.40 Aligned_cols=51 Identities=35% Similarity=0.896 Sum_probs=35.8
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
+.|+-|..+...+++ +|..- -.|.|.||.+||.+|++ .++.||
T Consensus 32 ~~C~eCq~~~~~~~e----C~v~w-G~CnHaFH~HCI~rWL~--------------------------------Tk~~CP 74 (88)
T COG5194 32 GTCPECQFGMTPGDE----CPVVW-GVCNHAFHDHCIYRWLD--------------------------------TKGVCP 74 (88)
T ss_pred CcCcccccCCCCCCc----ceEEE-EecchHHHHHHHHHHHh--------------------------------hCCCCC
Confidence 445555544433332 34442 47999999999999986 578999
Q ss_pred CCCcccCc
Q 018975 199 VCRKVFHV 206 (348)
Q Consensus 199 vCR~~~~~ 206 (348)
+||+.+-.
T Consensus 75 ld~q~w~~ 82 (88)
T COG5194 75 LDRQTWVL 82 (88)
T ss_pred CCCceeEE
Confidence 99998843
No 29
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.35 E-value=2.9e-07 Score=62.99 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=25.5
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
.|+||+..|..+. ++. +|+|+|.|+..|+..+.
T Consensus 1 ~C~~C~~~~~~~~------~~~-l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEER------RPR-LTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCC------CeE-EcccCCHHHHHHHHhhc
Confidence 5999999993222 233 59999999999999873
No 30
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.3e-07 Score=96.02 Aligned_cols=38 Identities=32% Similarity=0.723 Sum_probs=31.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+..|+||++.+..+++.. .|+++|+|.||..||..|++
T Consensus 291 ~~~C~IC~e~l~~~~~~~-----~~rL~C~Hifh~~CL~~W~e 328 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNIT-----PKRLPCGHIFHDSCLRSWFE 328 (543)
T ss_pred CCeeeeechhhccccccc-----cceeecccchHHHHHHHHHH
Confidence 579999999998765421 25699999999999999987
No 31
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.8e-07 Score=101.48 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhcCCCceeccC-CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHH
Q 018975 4 EEVAMELEAVQAVYGDECVVLDS-YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKH 82 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~-~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~ 82 (348)
|.|++|+|||.|||++|++.+.. ..+...|.+.+.- +....+.+.|.++.++.||...|.+.+.+..|+.+.+++.
T Consensus 8 eiQ~~e~ea~k~i~~~d~e~l~~r~~w~~~i~l~~l~---s~~~~~~~~lh~~~~~~yp~~kp~i~lk~~~~~~d~~i~~ 84 (1351)
T KOG1035|consen 8 EIQENELEALKAIYMDDFEELKARWAWVCHILLIALR---SCSLKLSGRLHVKCKRKYPYSKPEIKLKDHQGVSDEDIEL 84 (1351)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHhhhhhhhhhhhh---hhhHHHhhHhhhhhccccCCCCccccccccccchHHHHHH
Confidence 67999999999999999876642 2233333333211 1123678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCC
Q 018975 83 LISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115 (348)
Q Consensus 83 L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n 115 (348)
|...+...++...|+.|++++..-++++|.+.+
T Consensus 85 L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~ 117 (1351)
T KOG1035|consen 85 LSNELTALAKTLRGEVMIAELASIVQEFLKDHQ 117 (1351)
T ss_pred HHHHHHHhhccccccEEeeeHhhhhHHHHhccC
Confidence 999999999999999999999999999998765
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.28 E-value=3.5e-07 Score=69.03 Aligned_cols=65 Identities=22% Similarity=0.466 Sum_probs=29.4
Q ss_pred CCCCCccccccccCCCCccccCccccc--CCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLM--SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~--~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
+.+|+||+..+...+.. |..... .|++.||..||..||..+..... ......+
T Consensus 2 ~~~C~IC~~~~~~~~~~----p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~---------------------~~~~~~G 56 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEI----PDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQ---------------------SFIPIFG 56 (70)
T ss_dssp --S-SSS--SS-TT---------B--S-TT----B-SGGGHHHHHHHHSSS----------------------TTT--EE
T ss_pred CCCCCcCCcEecCCCCc----CceEcCCcccCCHHHHHHHHHHHHHcccCCe---------------------eeccccc
Confidence 46899999887633221 222233 89999999999999975544210 0113456
Q ss_pred CCCCCCcccCcc
Q 018975 196 TCPVCRKVFHVK 207 (348)
Q Consensus 196 ~CPvCR~~~~~~ 207 (348)
.||.|+.+|..+
T Consensus 57 ~CP~C~~~i~~~ 68 (70)
T PF11793_consen 57 ECPYCSSPISWS 68 (70)
T ss_dssp E-TTT-SEEEGG
T ss_pred CCcCCCCeeeEe
Confidence 899999998653
No 33
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.25 E-value=5.5e-07 Score=60.35 Aligned_cols=31 Identities=35% Similarity=1.017 Sum_probs=26.1
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
|+||+..+... . .+++|+|.|+..||.+|++
T Consensus 1 C~iC~~~~~~~--------~-~~~~C~H~fC~~C~~~~~~ 31 (41)
T PF00097_consen 1 CPICLEPFEDP--------V-ILLPCGHSFCRDCLRKWLE 31 (41)
T ss_dssp ETTTSSBCSSE--------E-EETTTSEEEEHHHHHHHHH
T ss_pred CCcCCccccCC--------C-EEecCCCcchHHHHHHHHH
Confidence 89999998652 2 2489999999999999986
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.25 E-value=2.5e-07 Score=90.74 Aligned_cols=36 Identities=33% Similarity=1.052 Sum_probs=28.1
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
-+|||||+-+..+ +.+.++ +.|.|.||..|+..||+
T Consensus 176 PTCpVCLERMD~s--~~gi~t----~~c~Hsfh~~cl~~w~~ 211 (493)
T KOG0804|consen 176 PTCPVCLERMDSS--TTGILT----ILCNHSFHCSCLMKWWD 211 (493)
T ss_pred CCcchhHhhcCcc--ccceee----eecccccchHHHhhccc
Confidence 4899999998543 333222 78999999999999976
No 35
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.23 E-value=9.5e-07 Score=57.17 Aligned_cols=30 Identities=37% Similarity=0.912 Sum_probs=23.7
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
|+||+..... . ..++|+|.||..|+..|+.
T Consensus 1 C~iC~~~~~~---------~-~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKD---------P-VVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCC---------c-EEecCCChHHHHHHHHHHH
Confidence 8999987321 2 2379999999999999975
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.7e-07 Score=83.03 Aligned_cols=51 Identities=31% Similarity=0.608 Sum_probs=39.4
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH-HHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR-WWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~-w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
+..|+||++.... |. +++|+|+||..||.. |-. .....
T Consensus 215 d~kC~lC~e~~~~--------ps--~t~CgHlFC~~Cl~~~~t~-------------------------------~k~~~ 253 (271)
T COG5574 215 DYKCFLCLEEPEV--------PS--CTPCGHLFCLSCLLISWTK-------------------------------KKYEF 253 (271)
T ss_pred ccceeeeecccCC--------cc--cccccchhhHHHHHHHHHh-------------------------------hcccc
Confidence 5569999987642 33 389999999999999 732 24567
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.....+++
T Consensus 254 CplCRak~~pk~v 266 (271)
T COG5574 254 CPLCRAKVYPKKV 266 (271)
T ss_pred Cchhhhhccchhh
Confidence 9999998877655
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=2.1e-06 Score=81.84 Aligned_cols=55 Identities=25% Similarity=0.611 Sum_probs=37.9
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
+..||||+..-..... +-|+. ..|||.||..|+.+.|. .....|
T Consensus 3 ~~~CP~Ck~~~y~np~----~kl~i-~~CGH~~C~sCv~~l~~-------------------------------~~~~~C 46 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPS----LKLMV-NVCGHTLCESCVDLLFV-------------------------------RGSGSC 46 (309)
T ss_pred CCCCCcCCCCCccCcc----ccccc-CCCCCcccHHHHHHHhc-------------------------------CCCCCC
Confidence 4589999985221111 11232 27999999999999864 244689
Q ss_pred CCCCcccCccc
Q 018975 198 PVCRKVFHVKD 208 (348)
Q Consensus 198 PvCR~~~~~~d 208 (348)
|+|+.++...+
T Consensus 47 P~C~~~lrk~~ 57 (309)
T TIGR00570 47 PECDTPLRKNN 57 (309)
T ss_pred CCCCCccchhh
Confidence 99999886654
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.20 E-value=4.9e-07 Score=85.82 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=43.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|.||.+.|.. |.+ |+|+|.||+-||..|++ .+-.||
T Consensus 24 LRC~IC~eyf~i--------p~i--tpCsHtfCSlCIR~~L~--------------------------------~~p~CP 61 (442)
T KOG0287|consen 24 LRCGICFEYFNI--------PMI--TPCSHTFCSLCIRKFLS--------------------------------YKPQCP 61 (442)
T ss_pred HHHhHHHHHhcC--------cee--ccccchHHHHHHHHHhc--------------------------------cCCCCC
Confidence 489999999964 544 89999999999999986 567899
Q ss_pred CCCcccCccchH
Q 018975 199 VCRKVFHVKDLE 210 (348)
Q Consensus 199 vCR~~~~~~d~~ 210 (348)
.|+..+.+.++.
T Consensus 62 ~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 62 TCCVTVTESDLR 73 (442)
T ss_pred ceecccchhhhh
Confidence 999999998876
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.13 E-value=9e-07 Score=82.49 Aligned_cols=46 Identities=33% Similarity=0.559 Sum_probs=38.5
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|-||-+.|.. |. .|+|+|-||+-||.+|++ .+-.||
T Consensus 26 lrC~IC~~~i~i--------p~--~TtCgHtFCslCIR~hL~--------------------------------~qp~CP 63 (391)
T COG5432 26 LRCRICDCRISI--------PC--ETTCGHTFCSLCIRRHLG--------------------------------TQPFCP 63 (391)
T ss_pred HHhhhhhheeec--------ce--ecccccchhHHHHHHHhc--------------------------------CCCCCc
Confidence 479999998864 43 389999999999999985 667899
Q ss_pred CCCcccCc
Q 018975 199 VCRKVFHV 206 (348)
Q Consensus 199 vCR~~~~~ 206 (348)
+||+++..
T Consensus 64 ~Cr~~~~e 71 (391)
T COG5432 64 VCREDPCE 71 (391)
T ss_pred cccccHHh
Confidence 99997744
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.93 E-value=2.3e-06 Score=62.69 Aligned_cols=54 Identities=31% Similarity=0.595 Sum_probs=25.7
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|++|..-|.. |++ +..|.|.|++.||..-+ ..-||
T Consensus 8 LrCs~C~~~l~~--------pv~-l~~CeH~fCs~Ci~~~~----------------------------------~~~CP 44 (65)
T PF14835_consen 8 LRCSICFDILKE--------PVC-LGGCEHIFCSSCIRDCI----------------------------------GSECP 44 (65)
T ss_dssp TS-SSS-S--SS---------B----SSS--B-TTTGGGGT----------------------------------TTB-S
T ss_pred cCCcHHHHHhcC--------Cce-eccCccHHHHHHhHHhc----------------------------------CCCCC
Confidence 589999988864 665 48999999999996643 13499
Q ss_pred CCCcccCccchHHHHhh
Q 018975 199 VCRKVFHVKDLEHVLNL 215 (348)
Q Consensus 199 vCR~~~~~~d~~~~~~l 215 (348)
||+.+...+|+.-...|
T Consensus 45 vC~~Paw~qD~~~NrqL 61 (65)
T PF14835_consen 45 VCHTPAWIQDIQINRQL 61 (65)
T ss_dssp SS--B-S-SS----HHH
T ss_pred CcCChHHHHHHHhhhhh
Confidence 99999999888655433
No 41
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.1e-06 Score=81.04 Aligned_cols=67 Identities=27% Similarity=0.515 Sum_probs=46.9
Q ss_pred HhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCC
Q 018975 110 KLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGP 189 (348)
Q Consensus 110 ~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (348)
.++.....+..|+||-..|..+.+.....-.+-.++|.|.||..||..|.-
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci----------------------------- 266 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI----------------------------- 266 (328)
T ss_pred CCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee-----------------------------
Confidence 344455677899999988865442222111222389999999999999953
Q ss_pred CCCCCCCCCCCCcccCc
Q 018975 190 IDGNMGTCPVCRKVFHV 206 (348)
Q Consensus 190 ~~~~~~~CPvCR~~~~~ 206 (348)
.+.+.+||.|++.++.
T Consensus 267 -vGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 267 -VGKKQTCPYCKEKVDL 282 (328)
T ss_pred -ecCCCCCchHHHHhhH
Confidence 1467799999999843
No 42
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.87 E-value=6.4e-06 Score=62.59 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=39.5
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..||||...+.+ |.. ++|+|.|...||.+|+. .....||
T Consensus 5 f~CpIt~~lM~d--------PVi--~~~G~tyer~~I~~~l~-------------------------------~~~~~~P 43 (73)
T PF04564_consen 5 FLCPITGELMRD--------PVI--LPSGHTYERSAIERWLE-------------------------------QNGGTDP 43 (73)
T ss_dssp GB-TTTSSB-SS--------EEE--ETTSEEEEHHHHHHHHC-------------------------------TTSSB-T
T ss_pred cCCcCcCcHhhC--------cee--CCcCCEEcHHHHHHHHH-------------------------------cCCCCCC
Confidence 579999999875 544 79999999999999985 2367899
Q ss_pred CCCcccCccchHHHHhh
Q 018975 199 VCRKVFHVKDLEHVLNL 215 (348)
Q Consensus 199 vCR~~~~~~d~~~~~~l 215 (348)
+|++++...++..+..+
T Consensus 44 ~t~~~l~~~~l~pn~~L 60 (73)
T PF04564_consen 44 FTRQPLSESDLIPNRAL 60 (73)
T ss_dssp TT-SB-SGGGSEE-HHH
T ss_pred CCCCcCCcccceECHHH
Confidence 99999988766544433
No 43
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.85 E-value=1.1e-05 Score=54.91 Aligned_cols=33 Identities=24% Similarity=0.795 Sum_probs=20.5
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
||||.+ |..++.. |. +++|+|.|+..||.+++.
T Consensus 1 CpIc~e-~~~~~n~----P~--~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENP----PM--VLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-----EE--E-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCC----CE--EEeCccHHHHHHHHHHHh
Confidence 999999 8665542 43 378999999999999976
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.6e-05 Score=83.14 Aligned_cols=52 Identities=23% Similarity=0.544 Sum_probs=41.6
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|++|-.-+.+ . ..+.|||+||..|+..-+... +..||
T Consensus 644 LkCs~Cn~R~Kd--~--------vI~kC~H~FC~~Cvq~r~etR-------------------------------qRKCP 682 (698)
T KOG0978|consen 644 LKCSVCNTRWKD--A--------VITKCGHVFCEECVQTRYETR-------------------------------QRKCP 682 (698)
T ss_pred eeCCCccCchhh--H--------HHHhcchHHHHHHHHHHHHHh-------------------------------cCCCC
Confidence 589999987754 1 237999999999999987733 34699
Q ss_pred CCCcccCccchHH
Q 018975 199 VCRKVFHVKDLEH 211 (348)
Q Consensus 199 vCR~~~~~~d~~~ 211 (348)
.|-..|...|+..
T Consensus 683 ~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 683 KCNAAFGANDVHR 695 (698)
T ss_pred CCCCCCCcccccc
Confidence 9999998888753
No 45
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.83 E-value=1.5e-05 Score=55.90 Aligned_cols=33 Identities=30% Similarity=0.756 Sum_probs=23.8
Q ss_pred CCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWN 160 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~ 160 (348)
.|-||+... .+++ ++. ++|. |+||..||.+|+.
T Consensus 1 ~CrIC~~~~-~~~~-----~l~--~PC~C~G~~~~vH~~Cl~~W~~ 38 (49)
T smart00744 1 ICRICHDEG-DEGD-----PLV--SPCRCKGSLKYVHQECLERWIN 38 (49)
T ss_pred CccCCCCCC-CCCC-----eeE--eccccCCchhHHHHHHHHHHHH
Confidence 489999822 2222 343 6884 9999999999986
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3.4e-05 Score=75.23 Aligned_cols=63 Identities=24% Similarity=0.592 Sum_probs=50.1
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|||||+.+.-..++. +. -+.|+|.|.+.||.+|+- + .....||
T Consensus 5 ~tcpiclds~~~~g~hr----~v-sl~cghlFgs~cie~wl~--k----------------------------~~~~~cp 49 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHR----IV-SLQCGHLFGSQCIEKWLG--K----------------------------KTKMQCP 49 (463)
T ss_pred ccCceeeeeeeecCceE----Ee-eecccccccHHHHHHHHh--h----------------------------hhhhhCc
Confidence 58999999987654442 22 379999999999999983 2 2567899
Q ss_pred CCCcccCccchHHHHhhh
Q 018975 199 VCRKVFHVKDLEHVLNLV 216 (348)
Q Consensus 199 vCR~~~~~~d~~~~~~l~ 216 (348)
.|....+..+|.+.+.+.
T Consensus 50 ~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 50 LCSGKATKRQIRPEYALR 67 (463)
T ss_pred ccCChhHHHHHHHHHHHH
Confidence 999999999998887665
No 47
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2e-05 Score=73.39 Aligned_cols=34 Identities=35% Similarity=0.867 Sum_probs=28.9
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
....|+||+..|.. | ++++|+|.||..||..+|.
T Consensus 12 ~~~~C~iC~~~~~~--------p--~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 12 EELTCPICLEYFRE--------P--VLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred ccccChhhHHHhhc--------C--ccccccchHhHHHHHHhcC
Confidence 35799999999976 4 3589999999999999974
No 48
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=3.2e-05 Score=74.92 Aligned_cols=36 Identities=25% Similarity=0.769 Sum_probs=26.3
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..|.||.+.|-...+.. |+ -.|+|.||..||..|+.
T Consensus 5 A~C~Ic~d~~p~~~~l~---~i---~~cGhifh~~cl~qwfe 40 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELG---PI---GTCGHIFHTTCLTQWFE 40 (465)
T ss_pred ceeeEeccCCccccccc---cc---cchhhHHHHHHHHHHHc
Confidence 68999966654443332 21 25999999999999986
No 49
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=5.2e-05 Score=60.40 Aligned_cols=16 Identities=50% Similarity=1.207 Sum_probs=15.2
Q ss_pred CCCCcccHHHHHHHHH
Q 018975 145 SCFHCFHSECIVRWWN 160 (348)
Q Consensus 145 ~C~H~FH~~Cl~~w~~ 160 (348)
.|.|.||.+||.+|++
T Consensus 80 ~CNHaFH~hCisrWlk 95 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK 95 (114)
T ss_pred ecchHHHHHHHHHHHh
Confidence 7999999999999986
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.39 E-value=3.5e-05 Score=80.18 Aligned_cols=51 Identities=29% Similarity=0.544 Sum_probs=38.9
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|++||..|.+.... .+ -.|.||||.+||..|-+ ...+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~------~~-k~c~H~FC~~Ci~sWsR--------------------------------~aqT 162 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEE------SE-KHTAHYFCEECVGSWSR--------------------------------CAQT 162 (1134)
T ss_pred hhhhhhHHHHHHHHHhhc------cc-cccccccHHHHhhhhhh--------------------------------hccc
Confidence 346799999988654321 12 69999999999999964 4568
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||..|..
T Consensus 163 CPiDR~EF~~ 172 (1134)
T KOG0825|consen 163 CPVDRGEFGE 172 (1134)
T ss_pred Cchhhhhhhe
Confidence 9999987754
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00011 Score=69.32 Aligned_cols=49 Identities=29% Similarity=0.596 Sum_probs=37.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
..+|+||+..-. .|. .+.|+|.||..||.--.. ..+..|
T Consensus 7 ~~eC~IC~nt~n--------~Pv--~l~C~HkFCyiCiKGsy~-------------------------------ndk~~C 45 (324)
T KOG0824|consen 7 KKECLICYNTGN--------CPV--NLYCFHKFCYICIKGSYK-------------------------------NDKKTC 45 (324)
T ss_pred CCcceeeeccCC--------cCc--cccccchhhhhhhcchhh-------------------------------cCCCCC
Confidence 579999997642 252 389999999999965321 256789
Q ss_pred CCCCcccCcc
Q 018975 198 PVCRKVFHVK 207 (348)
Q Consensus 198 PvCR~~~~~~ 207 (348)
+|||.+|+..
T Consensus 46 avCR~pids~ 55 (324)
T KOG0824|consen 46 AVCRFPIDST 55 (324)
T ss_pred ceecCCCCcc
Confidence 9999999764
No 52
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=7.2e-05 Score=52.80 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=36.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
+.+|.||++.-.+ . .+-.|+|. ++.+|-.+.|. ..++.
T Consensus 7 ~dECTICye~pvd--s--------VlYtCGHMCmCy~Cg~rl~~-------------------------------~~~g~ 45 (62)
T KOG4172|consen 7 SDECTICYEHPVD--S--------VLYTCGHMCMCYACGLRLKK-------------------------------ALHGC 45 (62)
T ss_pred ccceeeeccCcch--H--------HHHHcchHHhHHHHHHHHHH-------------------------------ccCCc
Confidence 4799999986432 1 24689995 88999999876 46789
Q ss_pred CCCCCccc
Q 018975 197 CPVCRKVF 204 (348)
Q Consensus 197 CPvCR~~~ 204 (348)
||+||.+|
T Consensus 46 CPiCRapi 53 (62)
T KOG4172|consen 46 CPICRAPI 53 (62)
T ss_pred CcchhhHH
Confidence 99999988
No 53
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00034 Score=63.34 Aligned_cols=49 Identities=24% Similarity=0.532 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 103 LCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 103 lie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+++....+|.+.+ -...|.+|-..+..+|.. ++-|||.||..||..|-.
T Consensus 36 iVQSYLqWL~DsD-Y~pNC~LC~t~La~gdt~--------RLvCyhlfHW~ClneraA 84 (299)
T KOG3970|consen 36 IVQSYLQWLQDSD-YNPNCRLCNTPLASGDTT--------RLVCYHLFHWKCLNERAA 84 (299)
T ss_pred hHHHHHHHHhhcC-CCCCCceeCCccccCcce--------eehhhhhHHHHHhhHHHh
Confidence 3444555666653 346899999999887753 489999999999999954
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.16 E-value=0.00023 Score=71.51 Aligned_cols=65 Identities=29% Similarity=0.470 Sum_probs=48.7
Q ss_pred hhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCC
Q 018975 112 SAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPID 191 (348)
Q Consensus 112 te~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (348)
.+.|.....|.+|-++-.+ ++. ++|.|.||.-||..|++....
T Consensus 530 ~~enk~~~~C~lc~d~aed--------~i~--s~ChH~FCrlCi~eyv~~f~~--------------------------- 572 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAED--------YIE--SSCHHKFCRLCIKEYVESFME--------------------------- 572 (791)
T ss_pred CccccCceeecccCChhhh--------hHh--hhhhHHHHHHHHHHHHHhhhc---------------------------
Confidence 3445677899999988432 233 899999999999999874332
Q ss_pred CCCCCCCCCCcccCccchHHHH
Q 018975 192 GNMGTCPVCRKVFHVKDLEHVL 213 (348)
Q Consensus 192 ~~~~~CPvCR~~~~~~d~~~~~ 213 (348)
...++||+|-..+..++-+|.+
T Consensus 573 ~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 573 NNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCCCCccccccccccccchhh
Confidence 2348999999999887666555
No 55
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=8.6e-05 Score=71.33 Aligned_cols=50 Identities=32% Similarity=0.676 Sum_probs=38.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|+|||.-+... .+ .+.|.|-||..||..-+. .....|
T Consensus 43 ~v~c~icl~llk~t--------mt-tkeClhrfc~~ci~~a~r-------------------------------~gn~ec 82 (381)
T KOG0311|consen 43 QVICPICLSLLKKT--------MT-TKECLHRFCFDCIWKALR-------------------------------SGNNEC 82 (381)
T ss_pred hhccHHHHHHHHhh--------cc-cHHHHHHHHHHHHHHHHH-------------------------------hcCCCC
Confidence 46899999988642 22 368999999999977654 345679
Q ss_pred CCCCcccCcc
Q 018975 198 PVCRKVFHVK 207 (348)
Q Consensus 198 PvCR~~~~~~ 207 (348)
|-||+.+..+
T Consensus 83 ptcRk~l~Sk 92 (381)
T KOG0311|consen 83 PTCRKKLVSK 92 (381)
T ss_pred chHHhhcccc
Confidence 9999987543
No 56
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00063 Score=65.73 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=34.3
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
..+|+|||..-.+ +.+|+|.|. .|+.|-.. |+ .| +..
T Consensus 290 gkeCVIClse~rd----------t~vLPCRHLCLCs~Ca~~-Lr-~q------------------------------~n~ 327 (349)
T KOG4265|consen 290 GKECVICLSESRD----------TVVLPCRHLCLCSGCAKS-LR-YQ------------------------------TNN 327 (349)
T ss_pred CCeeEEEecCCcc----------eEEecchhhehhHhHHHH-HH-Hh------------------------------hcC
Confidence 4689999988653 135899995 89999644 33 22 357
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||.+|..
T Consensus 328 CPICRqpi~~ 337 (349)
T KOG4265|consen 328 CPICRQPIEE 337 (349)
T ss_pred CCccccchHh
Confidence 9999999854
No 57
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.78 E-value=0.0012 Score=69.82 Aligned_cols=52 Identities=27% Similarity=0.595 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 100 LVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 100 l~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
...+.+.+++.|... ..+|.||++.+..... .--...|||+||..||..|-.
T Consensus 176 ~~~~~~~li~~l~~~---~yeCmIC~e~I~~t~~------~WSC~sCYhVFHl~CI~~WAr 227 (950)
T KOG1952|consen 176 DLTLTQSLIEQLSNR---KYECMICTERIKRTAP------VWSCKSCYHVFHLNCIKKWAR 227 (950)
T ss_pred hHHHHHHHHHHHhcC---ceEEEEeeeeccccCC------ceecchhhhhhhHHHHHHHHH
Confidence 555556666666544 4899999998876543 333578999999999999976
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.73 E-value=0.00039 Score=66.39 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=41.5
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.+...|.+|-..|.+... .+.|.|-||..||.+||. ...
T Consensus 13 n~~itC~LC~GYliDATT---------I~eCLHTFCkSCivk~l~--------------------------------~~~ 51 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATT---------ITECLHTFCKSCIVKYLE--------------------------------ESK 51 (331)
T ss_pred ccceehhhccceeecchh---------HHHHHHHHHHHHHHHHHH--------------------------------Hhc
Confidence 367899999988876332 479999999999999986 356
Q ss_pred CCCCCCcccCcc
Q 018975 196 TCPVCRKVFHVK 207 (348)
Q Consensus 196 ~CPvCR~~~~~~ 207 (348)
.||+|.-.++..
T Consensus 52 ~CP~C~i~ih~t 63 (331)
T KOG2660|consen 52 YCPTCDIVIHKT 63 (331)
T ss_pred cCCccceeccCc
Confidence 899999888654
No 59
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0011 Score=64.72 Aligned_cols=62 Identities=26% Similarity=0.534 Sum_probs=42.6
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
..+..|.||++...+.- .....|-.+..|.|.||..||..|-...|... ....
T Consensus 159 s~~k~CGICme~i~ek~--~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~-------------------------~~sk 211 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA--ASERRFGILPNCNHSFCLNCIRKWRQATQFES-------------------------KTSK 211 (344)
T ss_pred cccccceehhhhccccc--hhhhhcccCCCcchhhhhcHhHhhhhhhcccc-------------------------cccc
Confidence 34689999999986533 11222444468999999999999965333210 2346
Q ss_pred CCCCCCccc
Q 018975 196 TCPVCRKVF 204 (348)
Q Consensus 196 ~CPvCR~~~ 204 (348)
.||.||...
T Consensus 212 sCP~CRv~s 220 (344)
T KOG1039|consen 212 SCPFCRVPS 220 (344)
T ss_pred CCCcccCcc
Confidence 799999876
No 60
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.47 E-value=0.025 Score=59.48 Aligned_cols=116 Identities=12% Similarity=0.186 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCC-ceeccCCCCeeEEEEec-CCCCCCCCcceEEEEEEEcCCCCCCC-CCcccccCCCCCCHHHHHH
Q 018975 6 VAMELEAVQAVYGDE-CVVLDSYPPHLHLRIKP-RTADVSSQQFVEAVIGIRASPKYPEH-PPRIDLIESKGLDDQRQKH 82 (348)
Q Consensus 6 ~~~ElEAL~sIY~dd-~~v~~~~~~~~~i~i~p-~~~~~~~~~~v~i~L~i~lp~~YP~~-~P~i~i~~~~GL~~~~i~~ 82 (348)
+.+|+-++--=|..= |+-++...+.++|.+.- ...+ ..|+-+.|.|.||.+||.. +|.+.+.++..+...+.++
T Consensus 425 LgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~---d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~ 501 (1081)
T KOG0309|consen 425 LGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV---DDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAK 501 (1081)
T ss_pred HHhHHhHhhccccccceEeeccccceEEEEecCCCCcc---ccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHH
Confidence 445555555444431 33233445677777753 2222 3688899999999999986 7888899999999999999
Q ss_pred HHHHHHHHHHHhc--CCchhhHHHHHHHHHhhhCCCCCCCCCccccccccC
Q 018975 83 LISCIQDKAHELT--SCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRK 131 (348)
Q Consensus 83 L~~~L~~~~ee~~--G~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~ 131 (348)
|++.|..++.... |.-++-..+..+..+|. .=.+|+..|..+
T Consensus 502 ~l~~L~~i~~q~v~s~~yClepClr~l~gnls-------ld~~~~~sf~~~ 545 (1081)
T KOG0309|consen 502 LLKILKDIALQKVKSGQYCLEPCLRQLVGNLS-------LDSSCLESFVNQ 545 (1081)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhcccc-------hhhHHHhhcccc
Confidence 9999999887765 44344443444433332 114556666553
No 61
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0039 Score=54.71 Aligned_cols=67 Identities=21% Similarity=0.467 Sum_probs=43.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
..+.|.||+-.-..+.-.+.++- -.+|+.-||.-||..|++-+-+..+. .+---+.
T Consensus 164 ~~~~cgicyayqldGTipDqtCd---N~qCgkpFHqiCL~dWLRgilTsRQS---------------------FdiiFGe 219 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCD---NIQCGKPFHQICLTDWLRGILTSRQS---------------------FDIIFGE 219 (234)
T ss_pred hhhcccceeeeecCCcccccccc---ccccCCcHHHHHHHHHHHHHhhccce---------------------eeeeecc
Confidence 45799999755444433333322 25899999999999999855432211 0123467
Q ss_pred CCCCCcccCcc
Q 018975 197 CPVCRKVFHVK 207 (348)
Q Consensus 197 CPvCR~~~~~~ 207 (348)
||.|-.++..|
T Consensus 220 CPYCS~PialK 230 (234)
T KOG3268|consen 220 CPYCSDPIALK 230 (234)
T ss_pred CCCCCCcceee
Confidence 99999999653
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.26 E-value=0.0016 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=23.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
...|||.+..|.+ |.. -+.|+|.|-...|..|+
T Consensus 11 ~~~CPiT~~~~~~--------PV~-s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 11 SLKCPITLQPFED--------PVK-SKKCGHTFEKEAILQYI 43 (57)
T ss_dssp -SB-TTTSSB-SS--------EEE-ESSS--EEEHHHHHHHC
T ss_pred ccCCCCcCChhhC--------CcC-cCCCCCeecHHHHHHHH
Confidence 4789999999975 544 36999999999999996
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.91 E-value=0.0086 Score=56.58 Aligned_cols=32 Identities=44% Similarity=0.707 Sum_probs=24.6
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
..|+.|-..+.. | +|.-.|+|.||.+||..-|
T Consensus 275 LkCplc~~Llrn--------p-~kT~cC~~~fc~eci~~al 306 (427)
T COG5222 275 LKCPLCHCLLRN--------P-MKTPCCGHTFCDECIGTAL 306 (427)
T ss_pred ccCcchhhhhhC--------c-ccCccccchHHHHHHhhhh
Confidence 689999988764 2 3423689999999998765
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.89 E-value=0.0083 Score=48.17 Aligned_cols=34 Identities=32% Similarity=0.690 Sum_probs=27.4
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.+...|++|-..|... +|. +.+|+|+||..|+.|
T Consensus 76 ~~~~~C~vC~k~l~~~-------~f~-~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-------VFV-VFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCc-------eEE-EeCCCeEEecccccC
Confidence 5667899999999652 366 489999999999854
No 65
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.011 Score=63.20 Aligned_cols=39 Identities=41% Similarity=0.927 Sum_probs=33.5
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHh
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWL 162 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~ 162 (348)
.|...|.+|..+|... ||+. -+|+|+||..||.+....+
T Consensus 815 ep~d~C~~C~~~ll~~-------pF~v-f~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-------PFYV-FPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred cCccchHHhcchhhcC-------ccee-eeccchHHHHHHHHHHHcc
Confidence 6788999999999753 7996 8999999999999987643
No 66
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.83 E-value=0.055 Score=53.16 Aligned_cols=115 Identities=18% Similarity=0.395 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCchhhHHHH----HHHHHhhh--------CCCCCCCCCcccccccc---------CC
Q 018975 74 GLDDQRQKHLISCIQDKAHELTSCLMLVALCE----EAVAKLSA--------MNHPDGDCPLCLYPLFR---------KD 132 (348)
Q Consensus 74 GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie----~~kE~Lte--------~n~~~~~C~ICl~~f~~---------~~ 132 (348)
.|...+...|...|..-+....+-.+--++.+ ..++.+.. .......|--|+..-.. ++
T Consensus 215 rlns~~y~~L~~kL~~PI~~~~ni~i~~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~ 294 (358)
T PF10272_consen 215 RLNSSEYRDLREKLRAPIRIARNIVIHQTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEE 294 (358)
T ss_pred EEcHHHHHHHHHHhhCccccCCCceECCCHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcc
Confidence 36667777788777764443333222222322 22332222 12445678888764221 01
Q ss_pred CCccccCcccccCCCCcc-----cHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCcc
Q 018975 133 KNVEVLPFMKLMSCFHCF-----HSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207 (348)
Q Consensus 133 ~~~~~~p~~k~~~C~H~F-----H~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~ 207 (348)
..+..++. ...|..|| |.+|+.+||-..|.+. +. ..+. ..+.+||.||+.|..-
T Consensus 295 ~~g~~~~~--~~~C~~C~CRPmWC~~Cm~kwFasrQd~~--------~~------~~Wl-----~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 295 QEGSPLPN--EPPCQQCYCRPMWCLECMGKWFASRQDQQ--------HP------ETWL-----SGKCPCPTCRAKFCIL 353 (358)
T ss_pred cCCccccc--CCCCccccccchHHHHHHHHHhhhcCCCC--------Ch------hhhh-----cCCCCCCCCcccceee
Confidence 11111221 24666665 6899999997444211 00 0111 4678999999999765
Q ss_pred ch
Q 018975 208 DL 209 (348)
Q Consensus 208 d~ 209 (348)
|+
T Consensus 354 DV 355 (358)
T PF10272_consen 354 DV 355 (358)
T ss_pred ee
Confidence 53
No 67
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0055 Score=60.98 Aligned_cols=48 Identities=29% Similarity=0.703 Sum_probs=38.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|.||+.-|.. |.+ |+|+|.|+..||.+-++ ....
T Consensus 83 sef~c~vc~~~l~~--------pv~--tpcghs~c~~Cl~r~ld--------------------------------~~~~ 120 (398)
T KOG4159|consen 83 SEFECCVCSRALYP--------PVV--TPCGHSFCLECLDRSLD--------------------------------QETE 120 (398)
T ss_pred chhhhhhhHhhcCC--------Ccc--ccccccccHHHHHHHhc--------------------------------cCCC
Confidence 35799999888864 433 79999999999999543 3457
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||.||..+..
T Consensus 121 cp~Cr~~l~e 130 (398)
T KOG4159|consen 121 CPLCRDELVE 130 (398)
T ss_pred Cccccccccc
Confidence 9999999864
No 68
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.73 E-value=0.004 Score=55.57 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=25.6
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
..|.||-..|.. |++ +.|+|+||..|.++=+
T Consensus 197 F~C~iCKkdy~s--------pvv--t~CGH~FC~~Cai~~y 227 (259)
T COG5152 197 FLCGICKKDYES--------PVV--TECGHSFCSLCAIRKY 227 (259)
T ss_pred eeehhchhhccc--------hhh--hhcchhHHHHHHHHHh
Confidence 379999998864 544 8999999999988754
No 69
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.36 E-value=0.0061 Score=59.53 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=27.1
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..|..|-+.+-..++.. .-++|.|+||..|+..++.
T Consensus 366 L~Cg~CGe~~Glk~e~L------qALpCsHIfH~rCl~e~L~ 401 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERL------QALPCSHIFHLRCLQEILE 401 (518)
T ss_pred hhhhhhhhhhcCCcccc------cccchhHHHHHHHHHHHHH
Confidence 57999977665544421 2389999999999999974
No 70
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.017 Score=55.30 Aligned_cols=59 Identities=20% Similarity=0.528 Sum_probs=44.8
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|.||-.+|+.++.. ..|.. +.|+|.|+..|+...+. .....||
T Consensus 4 ~~c~~c~~~~s~~~~~--~~p~~--l~c~h~~c~~c~~~l~~-------------------------------~~~i~cp 48 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGD--HIPRV--LKCGHTICQNCASKLLG-------------------------------NSRILCP 48 (296)
T ss_pred CceeecCccccccCcc--cCCcc--cccCceehHhHHHHHhc-------------------------------Cceeecc
Confidence 5899999999987433 34654 78999999999988754 4667899
Q ss_pred CCCcc--cCccchHHH
Q 018975 199 VCRKV--FHVKDLEHV 212 (348)
Q Consensus 199 vCR~~--~~~~d~~~~ 212 (348)
-||++ +...+++.+
T Consensus 49 fcR~~~~~~~~~~~~l 64 (296)
T KOG4185|consen 49 FCRETTEIPDGDVKSL 64 (296)
T ss_pred CCCCcccCCchhHhhh
Confidence 99998 555554433
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.0073 Score=57.06 Aligned_cols=30 Identities=27% Similarity=0.731 Sum_probs=25.0
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
.|-||-..|.. |++ +.|+||||..|-..-+
T Consensus 243 ~c~icr~~f~~--------pVv--t~c~h~fc~~ca~~~~ 272 (313)
T KOG1813|consen 243 KCFICRKYFYR--------PVV--TKCGHYFCEVCALKPY 272 (313)
T ss_pred ccccccccccc--------chh--hcCCceeehhhhcccc
Confidence 59999999975 433 8999999999987764
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.18 E-value=0.011 Score=58.94 Aligned_cols=36 Identities=25% Similarity=0.579 Sum_probs=28.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..+..|+||...+.+ |+- .+.|+|-||..|+..|+.
T Consensus 19 ~~~l~C~~C~~vl~~--------p~~-~~~cgh~fC~~C~~~~~~ 54 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD--------PVQ-TTTCGHRFCAGCLLESLS 54 (391)
T ss_pred cccccCccccccccC--------CCC-CCCCCCcccccccchhhc
Confidence 445799999999864 333 159999999999999975
No 73
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=94.78 E-value=0.11 Score=44.70 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 1 MAEEEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 1 m~~Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
|+.-.+..|+..|..--...+.+... .-..+.+.|....+ ..=..-.+.+.|.||++||..||.+.+..
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~--tpyegg~f~~~i~fp~~YP~~pP~v~f~t 71 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSD--SPYAGGVFFLSILFPPDYPFKPPKVQFTT 71 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCC--CCCCCCEEEEEEECCcccCCCCCEEEEec
Confidence 78788999999997644444433322 12355566652211 11112357899999999999999998754
No 74
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.74 E-value=0.012 Score=54.28 Aligned_cols=29 Identities=34% Similarity=0.809 Sum_probs=20.7
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
..|.-|..- ...+ ||. +|.|+|+||..|.
T Consensus 4 VhCn~C~~~-~~~~------~f~-LTaC~HvfC~~C~ 32 (233)
T KOG4739|consen 4 VHCNKCFRF-PSQD------PFF-LTACRHVFCEPCL 32 (233)
T ss_pred EEecccccc-CCCC------cee-eeechhhhhhhhc
Confidence 467767543 2222 577 5999999999996
No 75
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.67 E-value=0.21 Score=49.18 Aligned_cols=36 Identities=25% Similarity=0.534 Sum_probs=25.9
Q ss_pred hCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 113 AMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 113 e~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
++...-.-|-||-+.= + -+|.-+|+|..|..||..|
T Consensus 364 eMgsTFeLCKICaend----K------dvkIEPCGHLlCt~CLa~W 399 (563)
T KOG1785|consen 364 EMGSTFELCKICAEND----K------DVKIEPCGHLLCTSCLAAW 399 (563)
T ss_pred HccchHHHHHHhhccC----C------CcccccccchHHHHHHHhh
Confidence 3433445799997652 2 1255799999999999999
No 76
>PHA02862 5L protein; Provisional
Probab=94.66 E-value=0.023 Score=48.35 Aligned_cols=53 Identities=17% Similarity=0.447 Sum_probs=34.4
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|=||+..-. +... | -++..-..+-|..||.+|+++. ....|
T Consensus 2 ~diCWIC~~~~~--e~~~---P-C~C~GS~K~VHq~CL~~WIn~S------------------------------~k~~C 45 (156)
T PHA02862 2 SDICWICNDVCD--ERNN---F-CGCNEEYKVVHIKCMQLWINYS------------------------------KKKEC 45 (156)
T ss_pred CCEEEEecCcCC--CCcc---c-ccccCcchhHHHHHHHHHHhcC------------------------------CCcCc
Confidence 367999998732 2110 1 1111225789999999998732 45679
Q ss_pred CCCCcccCc
Q 018975 198 PVCRKVFHV 206 (348)
Q Consensus 198 PvCR~~~~~ 206 (348)
|.|+.++.-
T Consensus 46 eLCkteY~I 54 (156)
T PHA02862 46 NLCKTKYNI 54 (156)
T ss_pred cCCCCeEEE
Confidence 999998743
No 77
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.33 E-value=0.025 Score=63.03 Aligned_cols=36 Identities=28% Similarity=0.685 Sum_probs=25.3
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
++.|.||+..- ..+.|-++ +.|.|.||.+|..+-+.
T Consensus 3486 DDmCmICFTE~------L~AAP~Iq-L~C~HiFHlqC~R~vLE 3521 (3738)
T KOG1428|consen 3486 DDMCMICFTEA------LSAAPAIQ-LDCSHIFHLQCCRRVLE 3521 (3738)
T ss_pred CceEEEEehhh------hCCCccee-cCCccchhHHHHHHHHH
Confidence 45677776432 23346665 89999999999988765
No 78
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.33 E-value=0.041 Score=38.23 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=13.2
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
||+|...+...+.. |.- =+|++-++..|..+
T Consensus 1 cp~C~e~~d~~d~~-----~~P-C~Cgf~IC~~C~~~ 31 (48)
T PF14570_consen 1 CPLCDEELDETDKD-----FYP-CECGFQICRFCYHD 31 (48)
T ss_dssp -TTTS-B--CCCTT-------S-STTS----HHHHHH
T ss_pred CCCcccccccCCCc-----ccc-CcCCCcHHHHHHHH
Confidence 89999999444432 221 36788877777544
No 79
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.015 Score=56.47 Aligned_cols=28 Identities=21% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
..|.||++.+.+- +..+|+|.-+ |....
T Consensus 306 ~lcVVcl~e~~~~----------~fvpcGh~cc--ct~cs 333 (355)
T KOG1571|consen 306 DLCVVCLDEPKSA----------VFVPCGHVCC--CTLCS 333 (355)
T ss_pred CceEEecCCccce----------eeecCCcEEE--chHHH
Confidence 5899999987642 2479999966 87776
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.89 E-value=0.046 Score=51.56 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=42.9
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|||+...|.... .|+-+-+|+|+|-..||..- ....
T Consensus 111 ~~~~~CPvt~~~~~~~~------~fv~l~~cG~V~s~~alke~---------------------------------k~~~ 151 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKH------KFVYLRPCGCVFSEKALKEL---------------------------------KKSK 151 (260)
T ss_pred CceeECCCCCcccCCce------eEEEEcCCCCEeeHHHHHhh---------------------------------cccc
Confidence 45568999999984322 47777799999999998774 1134
Q ss_pred CCCCCCcccCccchH
Q 018975 196 TCPVCRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPvCR~~~~~~d~~ 210 (348)
.||+|-++|...|+.
T Consensus 152 ~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 152 KCPVCGKPFTEEDII 166 (260)
T ss_pred cccccCCccccCCEE
Confidence 699999999988764
No 81
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.043 Score=50.66 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...||||-..+++.. |-..+-+|+|+|..+|..+.+. .-..|
T Consensus 221 ryiCpvtrd~LtNt~------~ca~Lr~sg~Vv~~ecvEklir--------------------------------~D~v~ 262 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTT------PCAVLRPSGHVVTKECVEKLIR--------------------------------KDMVD 262 (303)
T ss_pred ceecccchhhhcCcc------ceEEeccCCcEeeHHHHHHhcc--------------------------------ccccc
Confidence 478999999887632 4445579999999999999864 45789
Q ss_pred CCCCcccCccchHH
Q 018975 198 PVCRKVFHVKDLEH 211 (348)
Q Consensus 198 PvCR~~~~~~d~~~ 211 (348)
|||-+++..+||..
T Consensus 263 pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 263 PVTDKPLKDRDIIG 276 (303)
T ss_pred cCCCCcCcccceEe
Confidence 99999999998763
No 82
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.15 Score=50.88 Aligned_cols=65 Identities=20% Similarity=0.547 Sum_probs=43.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
+...|.||+..+...+.. |. ...|+|.|+.+|..+|+.-. . ..+....
T Consensus 145 ~~~~C~iC~~e~~~~~~~-----f~-~~~C~H~fC~~C~k~~iev~-~-------------------------~~~~~~~ 192 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDM-----FS-VLKCGHRFCKDCVKQHIEVK-L-------------------------LSGTVIR 192 (384)
T ss_pred ccccCccCccccccHhhh-----HH-HhcccchhhhHHhHHHhhhh-h-------------------------ccCCCcc
Confidence 457899999554433221 33 47899999999999998622 1 0135567
Q ss_pred CCC--CCcccCccchHHHH
Q 018975 197 CPV--CRKVFHVKDLEHVL 213 (348)
Q Consensus 197 CPv--CR~~~~~~d~~~~~ 213 (348)
||. |-..++..+..+++
T Consensus 193 C~~~~C~~~l~~~~c~~ll 211 (384)
T KOG1812|consen 193 CPHDGCESRLTLESCRKLL 211 (384)
T ss_pred CCCCCCCccCCHHHHhhhc
Confidence 875 87778776665554
No 83
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=0.096 Score=55.97 Aligned_cols=30 Identities=33% Similarity=0.775 Sum_probs=24.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
...|..|-..+. +|++- -.|+|.||.+|+.
T Consensus 840 ~skCs~C~~~Ld--------lP~Vh-F~CgHsyHqhC~e 869 (933)
T KOG2114|consen 840 VSKCSACEGTLD--------LPFVH-FLCGHSYHQHCLE 869 (933)
T ss_pred eeeecccCCccc--------cceee-eecccHHHHHhhc
Confidence 358999987763 48885 7999999999986
No 84
>PHA03096 p28-like protein; Provisional
Probab=93.37 E-value=0.048 Score=52.08 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=30.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
-.|.||++....... ..--|.-+..|.|.|+..|+..|..
T Consensus 179 k~c~ic~e~~~~k~~--~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYI--IKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhcc--ccccccccccCCcHHHHHHHHHHHH
Confidence 689999998775421 1123556679999999999999965
No 85
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=93.25 E-value=0.38 Score=41.70 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=44.7
Q ss_pred CCH-HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 1 MAE-EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 1 m~~-Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
|+. -.+..|+..|..--+..+.+..... ..+.+.|.... +..=..-.+.+.|.+|++||..||.|.+...
T Consensus 1 ~~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~--~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~ 73 (152)
T PTZ00390 1 MSISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPD--GTPYEGGYYKLELFLPEQYPMEPPKVRFLTK 73 (152)
T ss_pred CcHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCC--CCCCcCcEEEEEEECccccCCCCCEEEEecC
Confidence 443 3688899999875555555543222 35556665221 1111234688999999999999999988653
No 86
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.19 E-value=0.063 Score=37.14 Aligned_cols=32 Identities=28% Similarity=0.800 Sum_probs=21.5
Q ss_pred CCccccccccCCCCccccCcccccCC--C---CcccHHHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSC--F---HCFHSECIVRWWN 160 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C--~---H~FH~~Cl~~w~~ 160 (348)
|-||+..-.+++ |+. .+| . -+.|..||.+|+.
T Consensus 1 CrIC~~~~~~~~------~li--~pC~C~Gs~~~vH~~CL~~W~~ 37 (47)
T PF12906_consen 1 CRICLEGEEEDE------PLI--SPCRCKGSMKYVHRSCLERWIR 37 (47)
T ss_dssp ETTTTEE-SSSS-------EE---SSS-SSCCGSEECCHHHHHHH
T ss_pred CeEeCCcCCCCC------cee--cccccCCCcchhHHHHHHHHHH
Confidence 678998754433 344 455 3 4899999999987
No 87
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.05 Score=50.53 Aligned_cols=39 Identities=21% Similarity=0.673 Sum_probs=27.0
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCC-----CCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSC-----FHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C-----~H~FH~~Cl~~w~~ 160 (348)
..+.-|=||+.. |++.....+++ +| -|.-|..||.+|++
T Consensus 18 e~eR~CWiCF~T----deDn~~a~WV~--PCrCRGt~KWVHqsCL~rWiD 61 (293)
T KOG3053|consen 18 ELERCCWICFAT----DEDNRLAAWVH--PCRCRGTTKWVHQSCLSRWID 61 (293)
T ss_pred ccceeEEEEecc----Ccccchhhhcc--cccccCccHHHHHHHHHHHHh
Confidence 345679999854 23333334665 66 48899999999987
No 88
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.098 Score=49.12 Aligned_cols=51 Identities=29% Similarity=0.653 Sum_probs=37.9
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
..+.+||+|-.. -++|+.. .+|+|.||..||..=+.|. ...
T Consensus 237 t~~~~C~~Cg~~--------PtiP~~~-~~C~HiyCY~Ci~ts~~~~------------------------------asf 277 (298)
T KOG2879|consen 237 TSDTECPVCGEP--------PTIPHVI-GKCGHIYCYYCIATSRLWD------------------------------ASF 277 (298)
T ss_pred cCCceeeccCCC--------CCCCeee-ccccceeehhhhhhhhcch------------------------------hhc
Confidence 345689999755 2458774 5799999999998865422 346
Q ss_pred CCCCCCcccC
Q 018975 196 TCPVCRKVFH 205 (348)
Q Consensus 196 ~CPvCR~~~~ 205 (348)
.||.|-+..+
T Consensus 278 ~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 278 TCPLCGENVE 287 (298)
T ss_pred ccCccCCCCc
Confidence 8999998775
No 89
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=1.8 Score=36.92 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=31.8
Q ss_pred eEEEEEEEcCCCCCCCCCcccccCCCCCCHHH--HHHHHHHHHHHHHHh
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIESKGLDDQR--QKHLISCIQDKAHEL 94 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~--i~~L~~~L~~~~ee~ 94 (348)
....|.+.||.+||..+|.|.+..+-+-..-+ -+.-+..|+++|...
T Consensus 76 l~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~ 124 (175)
T KOG0421|consen 76 LKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAV 124 (175)
T ss_pred cEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHH
Confidence 46788889999999999999988765433221 223344555666553
No 90
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.37 E-value=0.15 Score=44.23 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=35.3
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCC---cccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFH---CFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG 192 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H---~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (348)
.....|-||...-. +. ..| =.|.. +-|.+||.+|++. .
T Consensus 6 ~~~~~CRIC~~~~~--~~---~~P----C~CkGs~k~VH~sCL~rWi~~------------------------------s 46 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV---TNY----CNCKNENKIVHKECLEEWINT------------------------------S 46 (162)
T ss_pred CCCCeeEecCCCCC--Cc---cCC----cccCCCchHHHHHHHHHHHhc------------------------------C
Confidence 44678999987632 11 111 24555 7799999999872 1
Q ss_pred CCCCCCCCCcccCcc
Q 018975 193 NMGTCPVCRKVFHVK 207 (348)
Q Consensus 193 ~~~~CPvCR~~~~~~ 207 (348)
....|+.|..++.-.
T Consensus 47 ~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 47 KNKSCKICNGPYNIK 61 (162)
T ss_pred CCCcccccCCeEEEE
Confidence 346799999988543
No 91
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.03 E-value=0.096 Score=50.40 Aligned_cols=29 Identities=38% Similarity=0.754 Sum_probs=22.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCC--CCcccHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSC--FHCFHSECIV 156 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C--~H~FH~~Cl~ 156 (348)
.-.+||||...+.. |. ++| ||.-|+.|-.
T Consensus 47 ~lleCPvC~~~l~~--------Pi---~QC~nGHlaCssC~~ 77 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP--------PI---FQCDNGHLACSSCRT 77 (299)
T ss_pred hhccCchhhccCcc--------cc---eecCCCcEehhhhhh
Confidence 34699999999875 44 478 7999999954
No 92
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.93 E-value=0.046 Score=58.17 Aligned_cols=49 Identities=29% Similarity=0.625 Sum_probs=36.3
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|.||+. .+. +|. +.|+|.||..|+...++ . .....||
T Consensus 455 ~~c~ic~~---~~~------~~i--t~c~h~~c~~c~~~~i~---~---------------------------~~~~~~~ 493 (674)
T KOG1001|consen 455 HWCHICCD---LDS------FFI--TRCGHDFCVECLKKSIQ---Q---------------------------SENAPCP 493 (674)
T ss_pred cccccccc---ccc------cee--ecccchHHHHHHHhccc---c---------------------------ccCCCCc
Confidence 79999998 211 344 89999999999988764 1 1223799
Q ss_pred CCCcccCccc
Q 018975 199 VCRKVFHVKD 208 (348)
Q Consensus 199 vCR~~~~~~d 208 (348)
+||..+..++
T Consensus 494 ~cr~~l~~~~ 503 (674)
T KOG1001|consen 494 LCRNVLKEKK 503 (674)
T ss_pred HHHHHHHHHH
Confidence 9999886654
No 93
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.84 Score=39.65 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCC-C--eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYP-P--HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK 73 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~-~--~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~ 73 (348)
..+..|++.|+.=-+..+.+....+ . .+...|... .+..=..--+.|.+.||.+||..||.|.+...-
T Consensus 8 ~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP--~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i 78 (153)
T COG5078 8 KRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGP--PDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKI 78 (153)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECC--CCCCcCCCEEEEEEECCCCCCCCCCeeeeccCC
Confidence 4678888888765554444442222 2 233333211 111112234789999999999999999887643
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.57 E-value=0.58 Score=40.65 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCCCCccccccccCC------CCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKD------KNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~------~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+..|||||+.=-+.- ..-+--|||--| -+=|+.||.+|-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T---s~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT---SYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC---ccchhHHHHHHHH
Confidence 578999997632210 001112444211 3458999999976
No 95
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.0065 Score=59.29 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=28.1
Q ss_pred CCCCccccccccC-CCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRK-DKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~-~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..|+||...+... ++ .+-..|+|.+|..||..|+.
T Consensus 197 ~sl~I~~~slK~~y~k-------~~~~~~g~~~~~~kL~k~L~ 232 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDK-------ISAIVCGHIYHHGKLSKWLA 232 (465)
T ss_pred hhhHhhHHHHHHHHHH-------HHHHhhcccchhhHHHHHHH
Confidence 5799999998764 22 12368999999999999986
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.34 E-value=0.12 Score=48.93 Aligned_cols=36 Identities=28% Similarity=0.612 Sum_probs=27.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
...||||...+...... ...++|+|+.|..|+..+.
T Consensus 158 ~~ncPic~e~l~~s~~~------~~~~~CgH~~h~~cf~e~~ 193 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFED------AGVLKCGHYMHSRCFEEMI 193 (276)
T ss_pred cCCCchhHHHhcccccc------CCccCcccchHHHHHHHHh
Confidence 45699999888765432 2348999999988887774
No 97
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.08 E-value=0.095 Score=44.28 Aligned_cols=35 Identities=20% Similarity=0.485 Sum_probs=26.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCC------CcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCF------HCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~------H~FH~~Cl~~w~ 159 (348)
..+|.||++.+...+.+ +- ++|+ |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~Gv------V~-vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGV------VY-VTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCE------EE-EecCCeehHHHHHHHHHHHHHH
Confidence 47999999999762322 22 4554 899999999993
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.98 E-value=0.16 Score=48.96 Aligned_cols=56 Identities=29% Similarity=0.678 Sum_probs=39.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
.++.||+|++++.-.|+. |.- -+|+-..|..| |- ++.. ...+.
T Consensus 13 eed~cplcie~mditdkn-----f~p-c~cgy~ic~fc---~~-~irq---------------------------~lngr 55 (480)
T COG5175 13 EEDYCPLCIEPMDITDKN-----FFP-CPCGYQICQFC---YN-NIRQ---------------------------NLNGR 55 (480)
T ss_pred ccccCcccccccccccCC-----ccc-CCcccHHHHHH---HH-HHHh---------------------------hccCC
Confidence 346699999999877764 332 58888877777 43 2433 25689
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||-||...+.+.+
T Consensus 56 cpacrr~y~denv 68 (480)
T COG5175 56 CPACRRKYDDENV 68 (480)
T ss_pred ChHhhhhccccce
Confidence 9999998876543
No 99
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.07 Score=50.49 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCchhhHHHHHHHHHhhhCC-----CC---CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHH
Q 018975 96 SCLMLVALCEEAVAKLSAMN-----HP---DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVR 157 (348)
Q Consensus 96 G~~ml~elie~~kE~Lte~n-----~~---~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~ 157 (348)
|.---|++++...+.+.++. .. ..-|.||++.-.+ . | +++|+|. -|..|-.+
T Consensus 270 gCcek~el~d~vtrl~k~~~g~~~~~s~~~~~LC~ICmDaP~D--C------v--fLeCGHmVtCt~CGkr 330 (350)
T KOG4275|consen 270 GCCEKYELDDRVTRLYKGNDGEQHSRSLATRRLCAICMDAPRD--C------V--FLECGHMVTCTKCGKR 330 (350)
T ss_pred chhHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCCcc--e------E--EeecCcEEeehhhccc
Confidence 44446777766666554432 11 3469999987432 2 3 3799998 45566433
No 100
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.2 Score=48.17 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=39.4
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....||||+..-.+.. + +..-+-+||..|+..|++ ..+.
T Consensus 299 ~~~~CpvClk~r~Npt--------v-l~vSGyVfCY~Ci~~Yv~--------------------------------~~~~ 337 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT--------V-LEVSGYVFCYPCIFSYVV--------------------------------NYGH 337 (357)
T ss_pred ccccChhHHhccCCCc--------e-EEecceEEeHHHHHHHHH--------------------------------hcCC
Confidence 3468999998876421 1 244488999999999986 5688
Q ss_pred CCCCCcccCccchH
Q 018975 197 CPVCRKVFHVKDLE 210 (348)
Q Consensus 197 CPvCR~~~~~~d~~ 210 (348)
|||=-.++..+++.
T Consensus 338 CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 338 CPVTGYPASVDHLI 351 (357)
T ss_pred CCccCCcchHHHHH
Confidence 99988888666554
No 101
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=90.32 E-value=1 Score=38.12 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCccccc
Q 018975 5 EVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLI 70 (348)
Q Consensus 5 e~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~ 70 (348)
.+..|+..|+.--+..+.+... ....+.+.+.+..+ ..=..-.+.+.|.+|++||..+|.|.+.
T Consensus 3 Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~--t~y~g~~~~~~~~~p~~yP~~pP~v~f~ 68 (141)
T cd00195 3 RLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPD--TPYEGGIFKLDIEFPEDYPFKPPKVRFV 68 (141)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCC--CCccCCEEEEEEECCCccCCCCCeEEEe
Confidence 4667788877655555544432 22355666654311 1112235788999999999999999885
No 102
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=89.99 E-value=0.55 Score=39.70 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCceecc--C-CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 6 VAMELEAVQAVYGDECVVLD--S-YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 6 ~~~ElEAL~sIY~dd~~v~~--~-~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
+..|+..|+.--...+.+.. + ....+.+.|.+..+ ..=..-.+.+.|.||++||..+|.|.+..
T Consensus 2 l~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~--t~y~gg~f~~~i~~p~~YP~~pP~v~f~t 68 (140)
T PF00179_consen 2 LQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPG--TPYEGGIFKFRISFPPDYPFSPPKVRFLT 68 (140)
T ss_dssp HHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETT--STTTTSEEEEEEEETTTTTTS--EEEESS
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCc--cceeccccccccccccccccccccccccc
Confidence 56788888765555544442 2 34466666654211 11123358999999999999999998865
No 103
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=89.45 E-value=1.3 Score=37.68 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcCCCceeccC---CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 5 EVAMELEAVQAVYGDECVVLDS---YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 5 e~~~ElEAL~sIY~dd~~v~~~---~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.+..|+..|..--+..+.+... .-..+.+.+. |... .-....+.+.|.||++||..+|.|.+...
T Consensus 2 Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~---~y~g~~f~~~l~~p~~yP~~pP~v~f~~~ 70 (145)
T smart00212 2 RLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGT---PYEGGIFKLTIEFPPDYPFKPPKVKFITK 70 (145)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCC---CcCCcEEEEEEECCcccCCCCCEEEEeCC
Confidence 3566777777555555544422 2234555555 3221 11234578999999999999999988653
No 104
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=0.47 Score=45.01 Aligned_cols=51 Identities=24% Similarity=0.582 Sum_probs=35.2
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCC
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPV 199 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPv 199 (348)
.||+|-..---... +-+| .-+|||-.|-.|+.+-+. .....||.
T Consensus 2 ~Cp~CKt~~Y~np~----lk~~-in~C~H~lCEsCvd~iF~-------------------------------~g~~~Cpe 45 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD----LKLM-INECGHRLCESCVDRIFS-------------------------------LGPAQCPE 45 (300)
T ss_pred CCcccccceecCcc----ceee-eccccchHHHHHHHHHHh-------------------------------cCCCCCCc
Confidence 58888754322111 1233 349999999999999875 35679999
Q ss_pred CCcccCc
Q 018975 200 CRKVFHV 206 (348)
Q Consensus 200 CR~~~~~ 206 (348)
|-.++-.
T Consensus 46 C~~iLRk 52 (300)
T KOG3800|consen 46 CMVILRK 52 (300)
T ss_pred ccchhhh
Confidence 9886643
No 105
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.23 E-value=1.4 Score=37.18 Aligned_cols=55 Identities=22% Similarity=0.541 Sum_probs=38.6
Q ss_pred CCCCCCCccccccccCCCCccccCcccccC-CCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMS-CFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNM 194 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~-C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (348)
.+-.+|.||-+...++. |.|--. |+-..+..|-+..|.+. ...
T Consensus 78 ~~lYeCnIC~etS~ee~-------FLKPneCCgY~iCn~Cya~LWK~~-----------------------------~~y 121 (140)
T PF05290_consen 78 PKLYECNICKETSAEER-------FLKPNECCGYSICNACYANLWKFC-----------------------------NLY 121 (140)
T ss_pred CCceeccCcccccchhh-------cCCcccccchHHHHHHHHHHHHHc-----------------------------ccC
Confidence 45679999998765432 555334 56668888888887633 245
Q ss_pred CCCCCCCcccCc
Q 018975 195 GTCPVCRKVFHV 206 (348)
Q Consensus 195 ~~CPvCR~~~~~ 206 (348)
-.||+|+..|-.
T Consensus 122 pvCPvCkTSFKs 133 (140)
T PF05290_consen 122 PVCPVCKTSFKS 133 (140)
T ss_pred CCCCcccccccc
Confidence 689999998843
No 106
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=1.9 Score=37.03 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 1 MAEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 1 m~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
|+..++.-|+..|++==+..+..-.... .++...|....+ +.=.---+.|.|.||+.||-.||.|.+..
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~--SpYEgG~F~l~I~~p~~YP~~PPkV~F~T 71 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPG--SPYEGGVFFLEIHFPEDYPFKPPKVRFLT 71 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCC--CCcCCCEEEEEEECCCCCCCCCCceEeec
Confidence 5556777788877651111111111111 235555543221 11122348999999999999999997754
No 107
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.19 Score=48.06 Aligned_cols=28 Identities=29% Similarity=0.744 Sum_probs=19.5
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
-|.-|-.++.- +-++.+|.|+||.+|-.
T Consensus 92 fCd~Cd~PI~I---------YGRmIPCkHvFCl~CAr 119 (389)
T KOG2932|consen 92 FCDRCDFPIAI---------YGRMIPCKHVFCLECAR 119 (389)
T ss_pred eecccCCccee---------eecccccchhhhhhhhh
Confidence 46666655532 33567999999999953
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.89 E-value=0.18 Score=47.75 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccchH
Q 018975 148 HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLE 210 (348)
Q Consensus 148 H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d~~ 210 (348)
-.+|.+||++|+--.|.+.. ... .+ ....+||.||+.|..-|+.
T Consensus 327 p~wc~~cla~~f~~rq~~v~--------------r~~-~~----~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVY--------------RYE-YH----RGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred cHHHHHHHHHHHhhcccchh--------------HHH-HH----hcCCCCcchhhceEEeeee
Confidence 34568999999864443210 000 00 3567899999999776653
No 109
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.81 E-value=0.15 Score=44.24 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=23.9
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHS 152 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~ 152 (348)
...++|+|||+.+..+|.. . +++|-.+||.
T Consensus 175 ddkGECvICLEdL~~GdtI------A-RLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTI------A-RLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCce------e-ccceEEEeec
Confidence 3458999999999998863 3 4899888884
No 110
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=86.98 E-value=0.25 Score=35.24 Aligned_cols=32 Identities=25% Similarity=0.650 Sum_probs=25.1
Q ss_pred ccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccc
Q 018975 143 LMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKD 208 (348)
Q Consensus 143 ~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d 208 (348)
+++|+|+.+..|+.-+ .-.-||.|-.+|...|
T Consensus 22 ~~pCgH~I~~~~f~~~----------------------------------rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 22 VLPCGHLICDNCFPGE----------------------------------RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cccccceeeccccChh----------------------------------hccCCCCCCCcccCCC
Confidence 4799999999997554 2356999999996654
No 111
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.32 E-value=0.37 Score=53.91 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=27.9
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
....|.||++-+..-. -...|+|+|++.|+..|+.
T Consensus 1152 ~~~~c~ic~dil~~~~---------~I~~cgh~~c~~c~~~~l~ 1186 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---------GIAGCGHEPCCRCDELWLY 1186 (1394)
T ss_pred cccchHHHHHHHHhcC---------CeeeechhHhhhHHHHHHH
Confidence 3458999999886422 1379999999999999986
No 112
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.15 E-value=0.24 Score=51.55 Aligned_cols=17 Identities=29% Similarity=0.854 Sum_probs=14.6
Q ss_pred ccccCCCCcccHHHHHH
Q 018975 141 MKLMSCFHCFHSECIVR 157 (348)
Q Consensus 141 ~k~~~C~H~FH~~Cl~~ 157 (348)
.++..|+++||..|+.+
T Consensus 532 ~rC~~C~avfH~~C~~r 548 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLRR 548 (580)
T ss_pred eeHHHHHHHHHHHHHhc
Confidence 57789999999999754
No 113
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=85.06 E-value=0.59 Score=31.66 Aligned_cols=16 Identities=19% Similarity=0.779 Sum_probs=10.9
Q ss_pred CCCCcccHHHHHHHHH
Q 018975 145 SCFHCFHSECIVRWWN 160 (348)
Q Consensus 145 ~C~H~FH~~Cl~~w~~ 160 (348)
.|.=-+|.+|+..||+
T Consensus 18 ~C~~r~H~~C~~~y~r 33 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFR 33 (43)
T ss_dssp -S--EE-HHHHHHHTT
T ss_pred ccCchHHHHHHHHHHh
Confidence 5777899999999975
No 114
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.44 E-value=0.58 Score=50.00 Aligned_cols=40 Identities=28% Similarity=0.721 Sum_probs=29.2
Q ss_pred hCCCCCCCCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHH
Q 018975 113 AMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWN 160 (348)
Q Consensus 113 e~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~ 160 (348)
.+|.++..|-||-.+=..++. .. -+|. .|.|.+||..|+.
T Consensus 7 ~mN~d~~~CRICr~e~~~d~p------Lf--hPCKC~GSIkYiH~eCL~eW~~ 51 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIRDDP------LF--HPCKCSGSIKYIHRECLMEWME 51 (1175)
T ss_pred CCCccchhceeecCCCCCCCc------Cc--ccccccchhHHHHHHHHHHHHh
Confidence 356677899999987655443 22 2554 6899999999976
No 115
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.48 E-value=0.61 Score=45.27 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=26.5
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
.....|.||-..+. +..+++|.|-.|-.|-.|.
T Consensus 59 Een~~C~ICA~~~T----------Ys~~~PC~H~~CH~Ca~Rl 91 (493)
T COG5236 59 EENMNCQICAGSTT----------YSARYPCGHQICHACAVRL 91 (493)
T ss_pred cccceeEEecCCce----------EEEeccCCchHHHHHHHHH
Confidence 34578999998875 3346999999999998875
No 116
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.30 E-value=0.27 Score=51.95 Aligned_cols=35 Identities=29% Similarity=0.705 Sum_probs=27.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
.-..+|+||+..+.. | -++.|+|.|+..|+..-+.
T Consensus 19 ~k~lEc~ic~~~~~~--------p--~~~kc~~~~l~~~~n~~f~ 53 (684)
T KOG4362|consen 19 QKILECPICLEHVKE--------P--SLLKCDHIFLKFCLNKLFE 53 (684)
T ss_pred hhhccCCceeEEeec--------c--chhhhhHHHHhhhhhceee
Confidence 345799999999865 2 1489999999999887664
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.65 E-value=0.46 Score=32.84 Aligned_cols=33 Identities=27% Similarity=0.676 Sum_probs=21.3
Q ss_pred ccCC-CCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCcc
Q 018975 143 LMSC-FHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207 (348)
Q Consensus 143 ~~~C-~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~ 207 (348)
+..| .||.+..||...+. ....||+|.++++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~--------------------------------~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS--------------------------------RSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S--------------------------------SSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhc--------------------------------cccCCCcccCcCccc
Confidence 4678 59999999988753 456899999999763
No 118
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.09 E-value=4.5 Score=35.56 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=42.4
Q ss_pred eeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC---CCCCHHHHHHHHHHHHHHHHHhcC
Q 018975 22 VVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES---KGLDDQRQKHLISCIQDKAHELTS 96 (348)
Q Consensus 22 ~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~---~GL~~~~i~~L~~~L~~~~ee~~G 96 (348)
.++.+.-..|.++++..... .=.----.+.|.+|.+||..+|.|-+.+. .++++.-=..-+.-|...|.....
T Consensus 23 ~~ind~m~ef~V~f~GP~ds--~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yD 98 (189)
T KOG0416|consen 23 TIINDGMQEFYVKFHGPKDS--PYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYD 98 (189)
T ss_pred EEecCcccEEEEEeeCCCCC--cccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHH
Confidence 33444456788888754321 11122357889999999999999977552 244444333334445555655333
No 119
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=81.54 E-value=2.5 Score=29.75 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=10.6
Q ss_pred CCCCCCCCCcccCc
Q 018975 193 NMGTCPVCRKVFHV 206 (348)
Q Consensus 193 ~~~~CPvCR~~~~~ 206 (348)
..+.||+|...+..
T Consensus 30 ~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 30 KNVVCPICSSRVTD 43 (54)
T ss_pred CCccCCCchhhhhh
Confidence 45789999886654
No 120
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=1.7 Score=42.35 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=25.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..+..||||.-+=-. .. ..+|+|--|..||.+++-
T Consensus 420 sEd~lCpICyA~pi~--------Av--f~PC~H~SC~~CI~qHlm 454 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN--------AV--FAPCSHRSCYGCITQHLM 454 (489)
T ss_pred cccccCcceecccch--------hh--ccCCCCchHHHHHHHHHh
Confidence 446789999865221 11 369999999999999863
No 121
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=0.68 Score=48.32 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
.-|+||+..|..+.- +|.. +.|+|..|.+|+..-.+
T Consensus 12 l~c~ic~n~f~~~~~----~Pvs--l~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRL----EPVS--LQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHHHhc----Cccc--ccccchHHHHHHHhHhh
Confidence 379999999986542 3544 79999999999987644
No 122
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.53 E-value=0.77 Score=42.47 Aligned_cols=36 Identities=28% Similarity=0.761 Sum_probs=25.3
Q ss_pred CCCCCccccccccCCCCccccCcccc---cCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKL---MSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~---~~C~H~FH~~Cl~~w~~ 160 (348)
+..||||-..---. |-+|+ ..|||-+|-.|..|-|.
T Consensus 10 d~~CPvCksDrYLn-------Pdik~linPECyHrmCESCvdRIFs 48 (314)
T COG5220 10 DRRCPVCKSDRYLN-------PDIKILINPECYHRMCESCVDRIFS 48 (314)
T ss_pred cccCCccccccccC-------CCeEEEECHHHHHHHHHHHHHHHhc
Confidence 45899998653221 33332 24999999999999875
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.23 E-value=1.9 Score=46.15 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHh
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWL 162 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~ 162 (348)
.+...|.||.-.|...++....+| +-.|.|-||..||..|.+-+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P---~~~~~~~~CP~Ci~s~~DqL 137 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICP---VQTHVENQCPNCLKSCNDQL 137 (1134)
T ss_pred ccccccchhheecCCcccccCcCc---hhhhhhhhhhHHHHHHHHHh
Confidence 456789999999988666555555 34799999999999997633
No 124
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=77.74 E-value=10 Score=31.88 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCCceeccCC-CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSY-PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLD 76 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~-~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~ 76 (348)
-.++-|+.+++.==+..|..-... -..+.|.+....+-- -..-.+.|.|.||+.||-++|.+-+..+.-+.
T Consensus 18 ~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTL--Ya~e~~qLq~~F~~~YP~esPqVmF~~~~P~H 89 (161)
T KOG0427|consen 18 NRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTL--YANETYQLQVEFPEHYPMESPQVMFVGPAPLH 89 (161)
T ss_pred HHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCcee--ecCcEEEEEEecCCCCCCCCCeEEEecCCCCC
Confidence 467889999888777776554322 235666665433210 01124789999999999999999877664343
No 125
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.71 E-value=2.3 Score=30.27 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=27.4
Q ss_pred CCCCCCCCccccccccCCCCccccCcccccCCCCcccHHH
Q 018975 115 NHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSEC 154 (348)
Q Consensus 115 n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~C 154 (348)
|.....|++|-..|..+++ .+....|+--+|+.|
T Consensus 2 ~~~~~~C~~Cg~~~~~~dD------iVvCp~CgapyHR~C 35 (54)
T PF14446_consen 2 NYEGCKCPVCGKKFKDGDD------IVVCPECGAPYHRDC 35 (54)
T ss_pred CccCccChhhCCcccCCCC------EEECCCCCCcccHHH
Confidence 3456789999999986665 345689999999999
No 126
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=76.44 E-value=9.1 Score=34.68 Aligned_cols=31 Identities=23% Similarity=0.599 Sum_probs=21.2
Q ss_pred CCCCCccc-----cccccCCCCccccCcccccCCCCcccHHHH
Q 018975 118 DGDCPLCL-----YPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 118 ~~~C~ICl-----~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
...|-||- ++|..+. .+++-.|+-+||..|+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~-------~~~C~~C~~v~H~~C~ 187 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDT-------TVRCPKCKSVFHKSCF 187 (202)
T ss_pred CCCCccCCCCCCCCCCCCCC-------eeeCCcCccccchhhc
Confidence 36888885 3454322 2346789999999995
No 127
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.98 E-value=5 Score=36.54 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHH-HhcC-----CchhhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccc
Q 018975 71 ESKGLDDQRQKHLISCIQD-KAH-ELTS-----CLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKL 143 (348)
Q Consensus 71 ~~~GL~~~~i~~L~~~L~~-~~e-e~~G-----~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~ 143 (348)
...+|....++.++..+.. .|- +..| --.+.++-..+.+...++ --.|.+|-.-.-.+- ++
T Consensus 130 k~k~L~ks~iE~lLqkf~q~gwf~e~eg~ftl~~ralaELe~YL~s~y~dn---lk~Cn~Ch~LvIqg~---------rC 197 (235)
T KOG4718|consen 130 KSKPLKKSRIEELLQKFIQMGWFMEVEGRFTLGPRALAELEFYLSSNYADN---LKNCNLCHCLVIQGI---------RC 197 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHhchhheecceEEEchHHHHHHHHHHHhhhHHH---HHHHhHhHHHhheee---------cc
Confidence 3566777777766664332 221 1222 122333333333333222 258999988765421 23
Q ss_pred cCCCCcccHHHHHHHHH
Q 018975 144 MSCFHCFHSECIVRWWN 160 (348)
Q Consensus 144 ~~C~H~FH~~Cl~~w~~ 160 (348)
-.|+=-+|..|+..|+.
T Consensus 198 g~c~i~~h~~c~qty~q 214 (235)
T KOG4718|consen 198 GSCNIQYHRGCIQTYLQ 214 (235)
T ss_pred CcccchhhhHHHHHHhc
Confidence 45666699999999974
No 128
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=73.84 E-value=2 Score=40.43 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=42.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|-+|...+.+.+...-.+|+. .|.-.+|..||..++. ... ++......+.||
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~---~c~~~~h~~CLa~~~~--~~e---------------------~g~~~p~eg~cp 236 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNP---DCDSLNHLTCLAEELL--EVE---------------------PGQLIPLEGMCP 236 (276)
T ss_pred hhhHHHHHHhccccceeccCCCC---CCCchhhhhhhhHHHh--ccC---------------------CCceeccCCCCC
Confidence 48999999996555544445543 6999999999999642 110 001113557899
Q ss_pred CCCcccCccc
Q 018975 199 VCRKVFHVKD 208 (348)
Q Consensus 199 vCR~~~~~~d 208 (348)
.|++.+.--+
T Consensus 237 ~C~~~~~w~~ 246 (276)
T KOG3005|consen 237 KCEKFLSWTT 246 (276)
T ss_pred chhceeeHHH
Confidence 9999775443
No 129
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.77 E-value=3.1 Score=44.61 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHhhhCC-----CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 98 LMLVALCEEAVAKLSAMN-----HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 98 ~ml~elie~~kE~Lte~n-----~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
....+.+..+.+.+.... .-...|.-|+.+....+... --.++..|+|.||..|++-..
T Consensus 759 i~~nd~~~l~~k~~~~~~~Gv~v~~e~rc~~c~~~~l~~~~~~---~~~~v~~c~h~yhk~c~~~~~ 822 (846)
T KOG2066|consen 759 ILKNDSKSLLNKFLKTARRGVLVSVEERCSSCFEPNLPSGAAF---DSVVVFHCGHMYHKECLMMES 822 (846)
T ss_pred HHHHHHHHHHHHHHHHHhcCeeEeehhhhhhhcccccccCccc---ceeeEEEccchhhhcccccHH
Confidence 334455555555555432 33468999999876544221 123458999999999998874
No 130
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.74 E-value=3.2 Score=42.19 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=27.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
...|.||...+.. .+..+.|+|.|+..|...|+.
T Consensus 70 ~~~c~ic~~~~~~---------~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 70 DVQCGICVESYDG---------EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred cccCCcccCCCcc---------hhhhcCCCcHHHHHHHHHHhh
Confidence 4799999988753 122479999999999988876
No 131
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=68.76 E-value=4.6 Score=34.49 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=17.5
Q ss_pred ceEEEEEEEcCCCCCCCCCcccccCCCCCC
Q 018975 47 FVEAVIGIRASPKYPEHPPRIDLIESKGLD 76 (348)
Q Consensus 47 ~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~ 76 (348)
.-.+.|.|.+|..||..+|.|.+-.-.|-.
T Consensus 74 kYEF~~eFdIP~tYP~t~pEi~lPeLdGKT 103 (161)
T PF08694_consen 74 KYEFDLEFDIPVTYPTTAPEIALPELDGKT 103 (161)
T ss_dssp EEEEEEEEE--TTTTTS----B-GGGTTT-
T ss_pred eEEEeeecCCCccCCCCCcceeccccCCch
Confidence 346899999999999999999986655543
No 132
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=8.9 Score=32.35 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=21.3
Q ss_pred cceEEEEEEEcCCCCCCCCCcccccC
Q 018975 46 QFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 46 ~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
+...+.|.++|++.||..||.+.+.+
T Consensus 49 e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 49 EGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CCceEEEEEEcccccCCCCCeeEeee
Confidence 34568999999999999999986644
No 133
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.32 E-value=3.1 Score=44.41 Aligned_cols=18 Identities=28% Similarity=0.840 Sum_probs=16.6
Q ss_pred ccCCCCcccHHHHHHHHH
Q 018975 143 LMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 143 ~~~C~H~FH~~Cl~~w~~ 160 (348)
+..|.|..|..|.+.||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~ 1062 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFR 1062 (1081)
T ss_pred hccccccccHHHHHHHHh
Confidence 478999999999999996
No 134
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=8.5 Score=33.94 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=29.1
Q ss_pred eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 30 HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 30 ~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
.|.+.|.|+.+.= +.-.+...|.+|+.||.+||.+....
T Consensus 61 ~~elti~PdEGyY---~gGkf~F~~~v~~~Yp~~PPKVkClt 99 (184)
T KOG0420|consen 61 EFELTITPDEGYY---QGGKFRFKFKVPNAYPHEPPKVKCLT 99 (184)
T ss_pred eEEEEEccCccee---cCceEEEEEECCCCCCCCCCeeeeee
Confidence 4788888875431 22347788999999999999997654
No 135
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.75 E-value=13 Score=31.71 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhh---cCCCceeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 4 EEVAMELEAVQAV---YGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 4 Ee~~~ElEAL~sI---Y~dd~~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
-.+.-||+-|+-= |-.++.+.+..-..++..|.|...- =..-.+.|.|.||..||-.||.|.+..
T Consensus 5 ~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~pp---Y~kgaF~l~I~fp~eYPFKPP~i~f~t 72 (153)
T KOG0422|consen 5 RRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPP---YNKGAFRLEIDFPVEYPFKPPKIKFKT 72 (153)
T ss_pred HHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCC---ccCcceEEEeeCCCCCCCCCCeeeeee
Confidence 3466677666532 1222333332334566777765321 123348999999999999999997643
No 136
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=13 Score=37.01 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+....|||=-..-++++ |-|+ +.|+|+....=|.+..+
T Consensus 332 HSvF~CPVlKeqtsdeN------PPm~-L~CGHVISkdAlnrLS~ 369 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDEN------PPMM-LICGHVISKDALNRLSK 369 (394)
T ss_pred cceeecccchhhccCCC------CCee-eeccceecHHHHHHHhh
Confidence 34467998766544433 3444 89999999999999754
No 137
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=66.59 E-value=11 Score=34.97 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=27.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+-.|||-|.+... |+.- +.|.|.|-.+-|..+++
T Consensus 189 ~nrCpitl~p~~~--------pils-~kcnh~~e~D~I~~~lq 222 (275)
T COG5627 189 SNRCPITLNPDFY--------PILS-SKCNHKPEMDLINKKLQ 222 (275)
T ss_pred cccCCcccCcchh--------HHHH-hhhcccccHHHHHHHhc
Confidence 4589999998764 5554 79999999999999864
No 138
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=64.25 E-value=5.3 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=15.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhh
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQ 163 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q 163 (348)
..|||....+.. | .+...|.|.-+. =+..|+...+
T Consensus 3 L~CPls~~~i~~--------P-~Rg~~C~H~~CF-Dl~~fl~~~~ 37 (50)
T PF02891_consen 3 LRCPLSFQRIRI--------P-VRGKNCKHLQCF-DLESFLESNQ 37 (50)
T ss_dssp SB-TTTSSB-SS--------E-EEETT--SS--E-EHHHHHHHHH
T ss_pred eeCCCCCCEEEe--------C-ccCCcCcccceE-CHHHHHHHhh
Confidence 357777766642 3 234678777321 2345666443
No 139
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=1 Score=51.17 Aligned_cols=36 Identities=28% Similarity=0.595 Sum_probs=23.2
Q ss_pred CCCCccccccccCCCCccccCccccc--CCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLM--SCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~--~C~H~FH~~Cl~~w~~ 160 (348)
..|+||...... .+||...+ -|--.||..|+..|..
T Consensus 1062 ~~~si~~~~~~~------~~~~~~~~r~~c~~~f~~~~l~~w~s 1099 (1312)
T KOG0803|consen 1062 REFSISHGSNDD------DLPFLSCLRAFCPNKFHTECLVKWKS 1099 (1312)
T ss_pred HHhhhhccccch------hhhHHHHHHHhhhhhhhchhhHHhhc
Confidence 567777644321 12333333 5999999999999965
No 140
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.95 E-value=7 Score=34.94 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEEEEEcCCCCCCCCCcccccC
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
-.+.|.|++|.+||..||.+.+..
T Consensus 53 G~FeldI~iPe~YPF~pPkv~F~T 76 (200)
T KOG0418|consen 53 GVFELDIKIPENYPFKPPKVKFIT 76 (200)
T ss_pred ceEEEEEecCCCCCCCCCceeeee
Confidence 358999999999999999996543
No 141
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=60.66 E-value=4.9 Score=28.33 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
|--|+.+|.............+...|.+.|+.+|=
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 55677777654321111123446799999999994
No 142
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.67 E-value=5.3 Score=36.73 Aligned_cols=41 Identities=32% Similarity=0.780 Sum_probs=30.8
Q ss_pred cCCCCcc---cHHHHHH-HHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccchH
Q 018975 144 MSCFHCF---HSECIVR-WWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLE 210 (348)
Q Consensus 144 ~~C~H~F---H~~Cl~~-w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d~~ 210 (348)
--|.||. |..||.+ |+.|++..+ ..-+|-+|..++...|.-
T Consensus 22 NVCEhClV~nHpkCiVQSYLqWL~DsD--------------------------Y~pNC~LC~t~La~gdt~ 66 (299)
T KOG3970|consen 22 NVCEHCLVANHPKCIVQSYLQWLQDSD--------------------------YNPNCRLCNTPLASGDTT 66 (299)
T ss_pred hHHHHHHhccCchhhHHHHHHHHhhcC--------------------------CCCCCceeCCccccCcce
Confidence 4577764 8899976 999998753 567899999888766543
No 143
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=58.78 E-value=0.86 Score=34.23 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..||.|-.++.. .. +|+++..|-..| .....||
T Consensus 2 ~~CP~C~~~L~~-------------~~-~~~~C~~C~~~~---------------------------------~~~a~CP 34 (70)
T PF07191_consen 2 NTCPKCQQELEW-------------QG-GHYHCEACQKDY---------------------------------KKEAFCP 34 (70)
T ss_dssp -B-SSS-SBEEE-------------ET-TEEEETTT--EE---------------------------------EEEEE-T
T ss_pred CcCCCCCCccEE-------------eC-CEEECccccccc---------------------------------eecccCC
Confidence 479999988743 22 788888997765 2457899
Q ss_pred CCCcccC
Q 018975 199 VCRKVFH 205 (348)
Q Consensus 199 vCR~~~~ 205 (348)
-|.+++.
T Consensus 35 dC~~~Le 41 (70)
T PF07191_consen 35 DCGQPLE 41 (70)
T ss_dssp TT-SB-E
T ss_pred CcccHHH
Confidence 9999884
No 144
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=58.59 E-value=4.8 Score=38.29 Aligned_cols=37 Identities=16% Similarity=0.485 Sum_probs=25.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~ 160 (348)
...|-||.......... ++. ++|. ++.|..|+..|+.
T Consensus 78 ~~~cRIc~~~~~~~~~~----~l~--~pC~C~g~l~~vH~~cl~~W~~ 119 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGL----LLI--SPCSCKGSLAYVHRSCLEKWFS 119 (323)
T ss_pred CCcEEEEeccccccccc----ccc--cCccccCcHHHHHHHHHHhhhc
Confidence 35899999976543221 233 5663 7889999999986
No 145
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.21 E-value=8 Score=33.58 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=26.5
Q ss_pred eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 30 HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 30 ~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.+.|..-|.+-.+ ---+...+.||.+||..||.+.+...
T Consensus 39 eV~i~gppdTlYe----GG~FkA~m~FP~dYP~sPP~~rF~s~ 77 (171)
T KOG0425|consen 39 EVAIIGPPDTLYE----GGFFKAHMKFPQDYPLSPPTFRFTSK 77 (171)
T ss_pred EEEEEcCCCcccc----CceeEEEEeCcccCCCCCCceeeehh
Confidence 4444444444322 12378888999999999999987654
No 146
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=57.51 E-value=6.9 Score=26.50 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCccccCccccc
Q 018975 251 AILKLQEENSGLIEPKRDLVV 271 (348)
Q Consensus 251 ~i~~~Q~~~ggiId~~~~~~~ 271 (348)
++++.|..-||||||+....+
T Consensus 2 rlLe~Q~~~gGiidp~tg~~l 22 (45)
T PF00681_consen 2 RLLEAQLATGGIIDPETGERL 22 (45)
T ss_dssp HHHHHHHTTTSEEETTTTEEE
T ss_pred ceeeeeeeeeeEEeCCCCeEE
Confidence 578999999999999865543
No 147
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=57.00 E-value=4.3 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.769 Sum_probs=8.7
Q ss_pred CCCCCCCCcccCccch
Q 018975 194 MGTCPVCRKVFHVKDL 209 (348)
Q Consensus 194 ~~~CPvCR~~~~~~d~ 209 (348)
.+.||||..+|+...-
T Consensus 20 ~~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 20 KGCCPLCGRPLDEEHR 35 (54)
T ss_dssp SEE-TTT--EE-HHHH
T ss_pred CCcCCCCCCCCCHHHH
Confidence 3489999999977543
No 148
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.65 E-value=7 Score=28.95 Aligned_cols=11 Identities=27% Similarity=1.241 Sum_probs=8.4
Q ss_pred ccHHHHHHHHH
Q 018975 150 FHSECIVRWWN 160 (348)
Q Consensus 150 FH~~Cl~~w~~ 160 (348)
||+.||.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999986
No 149
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.34 E-value=6.4 Score=35.91 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=9.2
Q ss_pred CCCCCCCCcccC
Q 018975 194 MGTCPVCRKVFH 205 (348)
Q Consensus 194 ~~~CPvCR~~~~ 205 (348)
...||+|+.+..
T Consensus 189 ~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 189 LRICPICRSPKT 200 (207)
T ss_pred CccCCCCcChhh
Confidence 456999998663
No 151
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=52.17 E-value=23 Score=27.14 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=14.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
...|-||-+.+--..... +|+.+..|.--.+..|..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge---~FVAC~eC~fPvCr~CyE 44 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGE---VFVACHECAFPVCRPCYE 44 (80)
T ss_dssp S-B-SSS--B--B-SSSS---B--S-SSS-----HHHHH
T ss_pred CcccccccCccccCCCCC---EEEEEcccCCccchhHHH
Confidence 568999998875433222 788888898888899964
No 152
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.74 E-value=12 Score=34.87 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=28.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
.+-.-|.+||.++.+ |.+ ++=+|+|+.+||..|+-
T Consensus 41 K~FdcCsLtLqPc~d--------Pvi--t~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD--------PVI--TPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccC--------Ccc--CCCCeeeeHHHHHHHHH
Confidence 556789999999865 443 68899999999999975
No 153
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=48.75 E-value=56 Score=31.17 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=39.1
Q ss_pred cccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccchHHHHhhhcCC
Q 018975 140 FMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQ 219 (348)
Q Consensus 140 ~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d~~~~~~l~~~~ 219 (348)
++|+..|++..+..=|..- ...||.|..-+.-.-.+.+..+.+..
T Consensus 28 w~KCp~c~~~~y~~eL~~n-----------------------------------~~vcp~c~~h~ri~A~~Ri~~llD~g 72 (294)
T COG0777 28 WTKCPSCGEMLYRKELESN-----------------------------------LKVCPKCGHHMRISARERLEALLDEG 72 (294)
T ss_pred eeECCCccceeeHHHHHhh-----------------------------------hhcccccCcccccCHHHHHHHhhCCC
Confidence 7788999998776655442 34799999877665555566666555
Q ss_pred CCCCCCCCCCCCccccccCCh
Q 018975 220 SSHLSSNGNEVDDDDKYLHSD 240 (348)
Q Consensus 220 ~~~~~s~~~e~~~~~~~~~~~ 240 (348)
+.. .....+.+.+++...+
T Consensus 73 sf~--el~~~l~~~dPL~F~d 91 (294)
T COG0777 73 SFE--ELDSPLEPKDPLKFPD 91 (294)
T ss_pred cce--ecccCCCcCCcccCCc
Confidence 543 1222334444455544
No 154
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=47.72 E-value=9 Score=24.78 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCCCccccccccCCCCc-cccCcccccCCCCccc
Q 018975 119 GDCPLCLYPLFRKDKNV-EVLPFMKLMSCFHCFH 151 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~-~~~p~~k~~~C~H~FH 151 (348)
..|+=|...|.-+|+.. ...--+++..|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 47999998887766421 1112346678888885
No 155
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=46.26 E-value=20 Score=30.07 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.2
Q ss_pred eEEEEEEEcCCCCCCCCCcccccCCCC
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIESKG 74 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~~~G 74 (348)
..+.|.+.+|+.||..||.|.+.+..+
T Consensus 36 ~~~~l~l~~p~~FP~~pp~v~l~d~~~ 62 (133)
T PF14461_consen 36 GPFPLRLVFPDDFPYLPPRVYLEDPKQ 62 (133)
T ss_pred eEEEEEEEECCcccCcCCEEEecCccc
Confidence 458899999999999999999877654
No 156
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.05 E-value=14 Score=33.72 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCCCCCcccccCCCC
Q 018975 51 VIGIRASPKYPEHPPRIDLIESKG 74 (348)
Q Consensus 51 ~L~i~lp~~YP~~~P~i~i~~~~G 74 (348)
.=.+.||++||..||.|+...+.|
T Consensus 55 hGkl~FP~eyP~KPPaI~MiTPNG 78 (244)
T KOG0894|consen 55 HGKLIFPPEYPFKPPAITMITPNG 78 (244)
T ss_pred eeEEeCCCCCCCCCCeeEEECCCC
Confidence 345689999999999999877765
No 157
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=44.46 E-value=92 Score=32.72 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCccccc-CCCCCCHHHHHH
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLI-ESKGLDDQRQKH 82 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~-~~~GL~~~~i~~ 82 (348)
|-++-||.-|.+=|.=++.-.+....+|++..+.+ ++++.. |.+.+|..||... +.+. ...-+.. .
T Consensus 622 ~vlqgElarLD~kF~v~ld~~~~~nN~I~liCkld-----dk~lPP--l~lsVP~~YPaq~--~~vdr~~~y~a~----p 688 (742)
T KOG4274|consen 622 EVLQGELARLDAKFEVDLDHQRHDNNHIILICKLD-----DKQLPP--LRLSVPTTYPAQN--VTVDRAVIYLAA----P 688 (742)
T ss_pred HHHHHHHHhhccceeecCCcccccCCeeEEEEEec-----CCCCCC--eeeeccccccccc--hhhhhHHHhhhc----H
Confidence 34566777666666544433333344554443332 224444 7789999999876 2221 1222333 3
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHH
Q 018975 83 LISCIQDKAHELTSCLMLVALCEEAV 108 (348)
Q Consensus 83 L~~~L~~~~ee~~G~~ml~elie~~k 108 (348)
|+..+....-+.+..+-++.+...+-
T Consensus 689 flq~vq~s~~~RlsrP~~~Sit~lLn 714 (742)
T KOG4274|consen 689 FLQDVQNSVYERLSRPGLSSITDLLN 714 (742)
T ss_pred HHHHHHHHHHHHHccCCcchHHHHHH
Confidence 44444444444443344554444333
No 158
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.91 E-value=17 Score=39.01 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=25.9
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
..|.+|-..+...+ .-+-.|+|.-|..|+..|+.
T Consensus 780 ~~CtVC~~vi~G~~--------~~c~~C~H~gH~sh~~sw~~ 813 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVD--------VWCQVCGHGGHDSHLKSWFF 813 (839)
T ss_pred cCceeecceeeeeE--------eecccccccccHHHHHHHHh
Confidence 36888877775432 23468999999999999974
No 159
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.68 E-value=23 Score=30.38 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCCCcccccC
Q 018975 50 AVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 50 i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
..|.+.||.+||..||...+..
T Consensus 58 y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 58 YKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred EEEEEeCCccCCCCCCccccCC
Confidence 6888999999999999987654
No 160
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=43.27 E-value=21 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.1
Q ss_pred eEEEEEEEcCCCCCCCCCcccccC
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
-.+-+.|.+|.+||..+|.+++.-
T Consensus 48 y~iPi~Iwlp~~yP~~pP~v~v~p 71 (121)
T PF05743_consen 48 YNIPICIWLPENYPYSPPIVYVRP 71 (121)
T ss_dssp EEEEEEEEE-TTTTTSSSEEEE-G
T ss_pred cceeEEEEEcccCCCCCCEEEEeC
Confidence 357888999999999999998754
No 161
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=15 Score=37.37 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=26.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
...||.|..+......- ..-..+...|+|.||..|+..|-.
T Consensus 226 tk~CP~c~~~iek~~gc--~~~~~~~~~c~~~FCw~Cl~~~~~ 266 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGC--NHMTCKSASCKHEFCWVCLASLSD 266 (444)
T ss_pred CccCCCcccchhccCCc--cccccccCCcCCeeceeeeccccc
Confidence 45699999998654321 110111135999999999988844
No 162
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.71 E-value=12 Score=37.29 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=4.3
Q ss_pred HHHhhhCCCCCCCCCccccccccC-----CCCccccCcccccCCCCcccHH
Q 018975 108 VAKLSAMNHPDGDCPLCLYPLFRK-----DKNVEVLPFMKLMSCFHCFHSE 153 (348)
Q Consensus 108 kE~Lte~n~~~~~C~ICl~~f~~~-----~~~~~~~p~~k~~~C~H~FH~~ 153 (348)
...+.+.|...-+||+=|..+.-- +......|++- +.|+|++..+
T Consensus 267 e~~~~~lNa~rpQCPVglnTL~fp~~~~~~~~~~~qP~VY-l~CGHVhG~h 316 (416)
T PF04710_consen 267 EALRQELNAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVY-LNCGHVHGYH 316 (416)
T ss_dssp HHHCHHSS-------------------------------------------
T ss_pred HHHHHHHhhcCCCCCcCCCccccccccccccccccCceee-ccccceeeec
Confidence 344556677778999988766431 12234568885 8999998754
No 163
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=40.27 E-value=12 Score=37.67 Aligned_cols=31 Identities=23% Similarity=0.577 Sum_probs=24.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
+..|+||..-|.+ |++ ++|+|..|..|-..-
T Consensus 4 elkc~vc~~f~~e--------pii--l~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 4 ELKCPVCGSFYRE--------PII--LPCSHNLCQACARNI 34 (699)
T ss_pred cccCceehhhccC--------ceE--eecccHHHHHHHHhh
Confidence 4689999988754 665 799999999997543
No 164
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=39.81 E-value=30 Score=33.80 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCCCc-eeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 6 VAMELEAVQAVYGDEC-VVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 6 ~~~ElEAL~sIY~dd~-~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
..+=|+||-+.|+..+ +.....-..+++.+. .+...+.++|.+|..+|...|.+.+-+
T Consensus 271 RrefI~al~~~fg~~vLE~D~~~~~k~s~L~~--------~~~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 271 RREFIEALLSHFGRPVLEYDAEFFRKISFLLE--------SGDFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred HHHHHHHHHHhcCCcceeecccccchhhHHhh--------cCCeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3444899999999873 222221122233221 123468899999999999999998754
No 165
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.41 E-value=19 Score=34.82 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
.+-..||+=-+.-+++ ..|+| |.|+|+.-.+-+.+.
T Consensus 334 Hs~FiCPVlKe~~t~E-----NpP~m--l~CgHVIskeal~~L 369 (396)
T COG5109 334 HSLFICPVLKELCTDE-----NPPVM--LECGHVISKEALSVL 369 (396)
T ss_pred cceeeccccHhhhccc-----CCCee--eeccceeeHHHHHHH
Confidence 3445788765554433 34777 899999999998886
No 166
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=39.15 E-value=15 Score=39.39 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=32.3
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcc--------------------cHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCF--------------------HSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~F--------------------H~~Cl~~w~ 159 (348)
...|.=||..+.+...-...-||+-+|.|+=-| |..|...|-
T Consensus 101 ~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~ 162 (750)
T COG0068 101 AATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYK 162 (750)
T ss_pred hhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhc
Confidence 468999998888877777777888778886544 788888773
No 167
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.05 E-value=16 Score=36.46 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
-.+||+|...+.-.. + +--|.+. |+|-|+..|...|.
T Consensus 306 wr~CpkC~~~ie~~~--G--Cnhm~Cr-C~~~fcy~C~~~~~ 342 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSE--G--CNHMTCR-CGHQFCYMCGGDWK 342 (384)
T ss_pred cCcCcccceeeeecC--C--cceEEee-ccccchhhcCcchh
Confidence 468999987763322 2 2234455 99999999999995
No 168
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.90 E-value=43 Score=32.50 Aligned_cols=14 Identities=21% Similarity=0.645 Sum_probs=11.0
Q ss_pred CCCCCCCCCCcccC
Q 018975 192 GNMGTCPVCRKVFH 205 (348)
Q Consensus 192 ~~~~~CPvCR~~~~ 205 (348)
.++..||.|-..+.
T Consensus 401 ~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 401 AFHAACPFCATQLA 414 (429)
T ss_pred cccccCcchhhhhc
Confidence 46778999988774
No 169
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=36.86 E-value=28 Score=33.90 Aligned_cols=49 Identities=29% Similarity=0.563 Sum_probs=31.8
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||..+....+. .|.- -+|+|..|..|+..-. ...+.||
T Consensus 250 ~s~p~~~~~~~~~d~-----~~lP-~~~~~~~~l~~~~t~~--------------------------------~~~~~~~ 291 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDS-----NFLP-CPCGFRLCLFCHKTIS--------------------------------DGDGRCP 291 (327)
T ss_pred CCCCCCCCccccccc-----cccc-ccccccchhhhhhccc--------------------------------ccCCCCC
Confidence 479999998754443 2331 4667776666654432 3678999
Q ss_pred CCCcccC
Q 018975 199 VCRKVFH 205 (348)
Q Consensus 199 vCR~~~~ 205 (348)
.||++..
T Consensus 292 ~~rk~~~ 298 (327)
T KOG2068|consen 292 GCRKPYE 298 (327)
T ss_pred ccCCccc
Confidence 9997663
No 170
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.77 E-value=27 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCCCC--ccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 118 DGDCP--LCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~--ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
-.-|| =|...+...+.. ..+.++...|+|.|+..|...|
T Consensus 18 ~~~CP~~~C~~~~~~~~~~--~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEE--GCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred ccCCCCCCCcceEEecCCC--CCCeeECCCCCCeECCCCCCcC
Confidence 34688 887776654211 1235555589999999998887
No 171
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=42 Score=31.31 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCCCCcccccCCCCC
Q 018975 51 VIGIRASPKYPEHPPRIDLIESKGL 75 (348)
Q Consensus 51 ~L~i~lp~~YP~~~P~i~i~~~~GL 75 (348)
.=.|.||++||-.||.|-+..+.|-
T Consensus 60 HGRI~lPadYPmKPPs~iLLTpNGR 84 (314)
T KOG0428|consen 60 HGRIVLPADYPMKPPSIILLTPNGR 84 (314)
T ss_pred eeeEecCCCCCCCCCeEEEEcCCCc
Confidence 3457899999999999988777653
No 172
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.87 E-value=19 Score=37.65 Aligned_cols=46 Identities=22% Similarity=0.780 Sum_probs=34.2
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.+.+.|.||+... .. +.+.|. |..|+..|.. .+-
T Consensus 477 ~~~~~~~~~~~~~-~~----------~~~~~~---~~~~l~~~~~--------------------------------~~~ 510 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SA----------RITPCS---HALCLRKWLY--------------------------------VQE 510 (543)
T ss_pred cccCcchHHHHHH-Hh----------cccccc---chhHHHhhhh--------------------------------hcc
Confidence 4568899999876 11 236777 9999999974 456
Q ss_pred CCCCCCcccCcc
Q 018975 196 TCPVCRKVFHVK 207 (348)
Q Consensus 196 ~CPvCR~~~~~~ 207 (348)
.||.|++.+..+
T Consensus 511 ~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 511 VCPLCHTYMKED 522 (543)
T ss_pred ccCCCchhhhcc
Confidence 899999977544
No 173
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=35.19 E-value=26 Score=20.95 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=10.7
Q ss_pred CCCCCCCcccCccch
Q 018975 195 GTCPVCRKVFHVKDL 209 (348)
Q Consensus 195 ~~CPvCR~~~~~~d~ 209 (348)
+.||+|-+.+....+
T Consensus 2 v~CPiC~~~v~~~~i 16 (26)
T smart00734 2 VQCPVCFREVPENLI 16 (26)
T ss_pred CcCCCCcCcccHHHH
Confidence 469999888755433
No 174
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=34.84 E-value=17 Score=24.76 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=21.1
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
|.||..... +. ..+..-.|...||..|+..-
T Consensus 2 C~vC~~~~~--~~-----~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 2 CPVCGQSDD--DG-----DMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp BTTTTSSCT--TS-----SEEEBSTTSCEEETTTSTSS
T ss_pred CcCCCCcCC--CC-----CeEEcCCCChhhCcccCCCC
Confidence 788887321 11 24456788999999998653
No 175
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.72 E-value=27 Score=32.83 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=36.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|||=--.|... .-|.-+-.|+|+|-..-|-.. ....|
T Consensus 111 ~fiCPvtgleMng~------~~F~~l~~CGcV~SerAlKei----------------------------------kas~C 150 (293)
T KOG3113|consen 111 RFICPVTGLEMNGK------YRFCALRCCGCVFSERALKEI----------------------------------KASVC 150 (293)
T ss_pred eeecccccceecce------EEEEEEeccceeccHHHHHHh----------------------------------hhccc
Confidence 35799877666431 236666799999987665443 34689
Q ss_pred CCCCcccCccch
Q 018975 198 PVCRKVFHVKDL 209 (348)
Q Consensus 198 PvCR~~~~~~d~ 209 (348)
++|-.++..+|.
T Consensus 151 ~~C~a~y~~~dv 162 (293)
T KOG3113|consen 151 HVCGAAYQEDDV 162 (293)
T ss_pred cccCCcccccCe
Confidence 999999988764
No 176
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.69 E-value=49 Score=33.27 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=36.1
Q ss_pred hcCCchhhHHHHHH--HHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 94 LTSCLMLVALCEEA--VAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 94 ~~G~~ml~elie~~--kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
..|.-++-.+++.. .+++..+ ...||-|.-.+...+.- --|.++.|+|+|+.-|-..
T Consensus 345 Ryg~rvve~~vn~~lsekwl~~N---~krCP~C~v~IEr~eGC----nKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 345 RYGKRVVEELVNDFLSEKWLESN---SKRCPKCKVVIERSEGC----NKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhc---CCCCCcccceeecCCCc----cceeeccccccceeehhhh
Confidence 34544444444322 2444443 47999999888654432 3567899999999999644
No 177
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.27 E-value=15 Score=35.13 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=13.5
Q ss_pred CCCCCccccccccCCCCccccCccccc---CCCCcccHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLM---SCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~---~C~H~FH~~Cl~~w 158 (348)
.+.||||-..=.-. .++-. .=.|.+|+-|-..|
T Consensus 172 ~g~CPvCGs~P~~s--------~l~~~~~~G~R~L~Cs~C~t~W 207 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS--------VLRGGEREGKRYLHCSLCGTEW 207 (290)
T ss_dssp -SS-TTT---EEEE--------EEE------EEEEEETTT--EE
T ss_pred CCcCCCCCCcCceE--------EEecCCCCccEEEEcCCCCCee
Confidence 47999997652211 00000 12567778888888
No 178
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=33.74 E-value=34 Score=31.40 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=18.7
Q ss_pred ccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 123 LCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 123 ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
|=|.++-.....-...|-+-+..|+||=-..=+..+
T Consensus 150 InL~p~~~~p~~P~~~P~gcRV~CgHC~~tFLfnt~ 185 (275)
T KOG4684|consen 150 INLDPLIEKPRDPGTAPTGCRVKCGHCNETFLFNTL 185 (275)
T ss_pred eecCCCCCCCCCCCCCCcceEEEecCccceeehhhH
Confidence 334444433333344466666789997544444444
No 179
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=33.56 E-value=71 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
....|.+|..+|.--...+ ..+..|.|.+|..|-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-----~~C~~C~~~VC~~C~ 86 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-----RVCVDCKHRVCKKCG 86 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-----EEETTTTEEEETTSE
T ss_pred CCcchhhhCCcccccCCCC-----CcCCcCCccccCccC
Confidence 5679999998875322211 246799999999995
No 180
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=33.56 E-value=62 Score=22.95 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=27.2
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+.-..|.++++.+.|.+.+.+.+.+.+|.
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 556666667899999999999999988887775
No 181
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.27 E-value=33 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=6.8
Q ss_pred CCCcccccccc
Q 018975 120 DCPLCLYPLFR 130 (348)
Q Consensus 120 ~C~ICl~~f~~ 130 (348)
.||-|...+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 47777766543
No 182
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=31.98 E-value=70 Score=22.42 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.9
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+.-..|.+.++...|.+.|.....+.+|.
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~ 34 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSKNTGA 34 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 556665567889999999999999988887774
No 183
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.87 E-value=21 Score=23.16 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCCCccccccccCCCC-ccccCcccccCCCCccc
Q 018975 119 GDCPLCLYPLFRKDKN-VEVLPFMKLMSCFHCFH 151 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~-~~~~p~~k~~~C~H~FH 151 (348)
..||=|-..|.-.++. ...---+++..|.|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 4799999988876642 11112446678888885
No 184
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=31.25 E-value=32 Score=36.43 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=17.5
Q ss_pred ccCCCCcccHHHHHHHHHHhh
Q 018975 143 LMSCFHCFHSECIVRWWNWLQ 163 (348)
Q Consensus 143 ~~~C~H~FH~~Cl~~w~~~~q 163 (348)
+-.|+-+||.+|+.-|+++..
T Consensus 38 c~~c~~~yH~~cvt~~~~~~~ 58 (694)
T KOG4443|consen 38 CSDCGQKYHPYCVTSWAQHAV 58 (694)
T ss_pred hhhhcccCCcchhhHHHhHHH
Confidence 358899999999999988653
No 185
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=30.16 E-value=17 Score=39.68 Aligned_cols=19 Identities=16% Similarity=0.520 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCCCccccc
Q 018975 52 IGIRASPKYPEHPPRIDLI 70 (348)
Q Consensus 52 L~i~lp~~YP~~~P~i~i~ 70 (348)
|.|.+|.+||..+|.+.+.
T Consensus 718 l~l~vP~~YP~~sp~~~~~ 736 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSVD 736 (799)
T ss_dssp -------------------
T ss_pred eeEeCCCCCCccCCcCccc
Confidence 5667999999999998763
No 186
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=35 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCCCCccccc
Q 018975 50 AVIGIRASPKYPEHPPRIDLI 70 (348)
Q Consensus 50 i~L~i~lp~~YP~~~P~i~i~ 70 (348)
+-..+.||.+||..||.+.+.
T Consensus 54 fpA~l~FP~DYPLsPPkm~Ft 74 (165)
T KOG0426|consen 54 FPARLSFPLDYPLSPPKMRFT 74 (165)
T ss_pred cceeeecCCCCCCCCCceeee
Confidence 456779999999999998764
No 187
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=30.04 E-value=28 Score=35.31 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
..|.||.. |.. + ..+..++++-.|+|.-|.+|-.+-
T Consensus 129 C~C~iC~k-fD~-~--~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 129 CMCCICSK-FDD-N--KNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CCccccCC-ccc-C--CCCeeEEeccCCCceehhhhhccc
Confidence 46888854 532 2 234568888899999999997664
No 188
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=29.26 E-value=35 Score=33.26 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.5
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
....|-.|........ -..+-.|.|+||.+|-
T Consensus 329 ~~~~Cf~C~~~~~~~~-------~y~C~~Ck~~FCldCD 360 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSG-------RYRCESCKNVFCLDCD 360 (378)
T ss_pred CCcceeeeccccCCCC-------cEEchhccceeeccch
Confidence 3456999955544322 2345799999999995
No 189
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.86 E-value=48 Score=27.92 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=22.7
Q ss_pred eEEEEEEEcCCCCCCCCCcccccCCCC
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIESKG 74 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~~~G 74 (348)
-.+.+.|.+|-.||...|.|.+-...|
T Consensus 78 yefdvefdipityp~tapeialpeldg 104 (167)
T KOG3357|consen 78 YEFDVEFDIPITYPTTAPEIALPELDG 104 (167)
T ss_pred heeeeeeccccccCCCCccccccccCc
Confidence 358899999999999999998865544
No 190
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=28.62 E-value=2.3e+02 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEEEcCCCCCCCCCcccccCCC
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIESK 73 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~~~ 73 (348)
...|.|.+|.+||..+|.+.+..+.
T Consensus 138 ~H~l~l~l~~~yp~~~p~~~~~~P~ 162 (291)
T PF09765_consen 138 QHYLELKLPSNYPFEPPSCSLDLPI 162 (291)
T ss_dssp EEEEEEETTTTTTTSEEEECS-TTS
T ss_pred eEEEEEEECCCCCCCCceeeCCCCc
Confidence 4678899999999999998765543
No 191
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.49 E-value=39 Score=39.85 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.9
Q ss_pred cCCCCcccHHHHHHHHHHhhc
Q 018975 144 MSCFHCFHSECIVRWWNWLQN 164 (348)
Q Consensus 144 ~~C~H~FH~~Cl~~w~~~~q~ 164 (348)
-.|+|+.|..|+.+|.+..+.
T Consensus 1149 s~c~h~mh~~c~~~~~~a~r~ 1169 (1738)
T KOG1140|consen 1149 SSCGHHMHYGCFKRYVQAKRF 1169 (1738)
T ss_pred eccCCcchHHHHHHHHHHHHH
Confidence 489999999999999986543
No 192
>PRK01343 zinc-binding protein; Provisional
Probab=28.43 E-value=41 Score=24.28 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=10.4
Q ss_pred CCCCCCCCCcccC
Q 018975 193 NMGTCPVCRKVFH 205 (348)
Q Consensus 193 ~~~~CPvCR~~~~ 205 (348)
....||+|++++.
T Consensus 8 p~~~CP~C~k~~~ 20 (57)
T PRK01343 8 PTRPCPECGKPST 20 (57)
T ss_pred CCCcCCCCCCcCc
Confidence 4578999999874
No 193
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.17 E-value=56 Score=26.06 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCCCCccccccccCCCCccccCcccccC--CCCcccHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMS--CFHCFHSECIVR 157 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~--C~H~FH~~Cl~~ 157 (348)
...|.||...... .++... |..+||..|..+
T Consensus 55 ~~~C~iC~~~~G~---------~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGA---------CIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCce---------eEEcCCCCCCcCCCHHHHHH
Confidence 4799999976211 223333 888999999755
No 194
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=27 Score=30.62 Aligned_cols=18 Identities=44% Similarity=0.755 Sum_probs=14.8
Q ss_pred CCCCCCCCCcccCccchH
Q 018975 193 NMGTCPVCRKVFHVKDLE 210 (348)
Q Consensus 193 ~~~~CPvCR~~~~~~d~~ 210 (348)
.-..||||-+.+..+|++
T Consensus 137 ~g~KCPvC~K~V~sDd~e 154 (205)
T KOG0801|consen 137 SGMKCPVCHKVVPSDDAE 154 (205)
T ss_pred CCccCCccccccCCCcce
Confidence 345799999999888876
No 195
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=26.48 E-value=34 Score=25.14 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.3
Q ss_pred CCCCCCCCCcccC
Q 018975 193 NMGTCPVCRKVFH 205 (348)
Q Consensus 193 ~~~~CPvCR~~~~ 205 (348)
..+.||+|++++.
T Consensus 5 ~~v~CP~C~k~~~ 17 (62)
T PRK00418 5 ITVNCPTCGKPVE 17 (62)
T ss_pred ccccCCCCCCccc
Confidence 4578999999873
No 196
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=26.17 E-value=1e+02 Score=21.57 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=27.3
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCL 98 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ 98 (348)
|.|.+.-..|.+.++.+.|.+.+.+.+.+.+|.+
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p 35 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLGCP 35 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 5566665668899999999999999888888743
No 197
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.12 E-value=59 Score=30.64 Aligned_cols=34 Identities=18% Similarity=0.459 Sum_probs=27.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
+..|||=++++.. |..- ..|+|+|-.+=|..++.
T Consensus 176 s~rdPis~~~I~n--------PviS-kkC~HvydrDsI~~~l~ 209 (262)
T KOG2979|consen 176 SNRDPISKKPIVN--------PVIS-KKCGHVYDRDSIMQILC 209 (262)
T ss_pred cccCchhhhhhhc--------hhhh-cCcCcchhhhhHHHHhc
Confidence 4589999998875 5443 79999999999999864
No 198
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=25.91 E-value=70 Score=30.14 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
....|+.|-+ +.. . ...+..|+|.+|.+=-+.+
T Consensus 308 tS~~C~~cg~-~~~-r-------~~~C~~cg~~~~rD~naa~ 340 (364)
T COG0675 308 TSKTCPCCGH-LSG-R-------LFKCPRCGFVHDRDVNAAL 340 (364)
T ss_pred CcccccccCC-ccc-e-------eEECCCCCCeehhhHHHHH
Confidence 3478999998 332 1 2246789999999866665
No 199
>smart00250 PLEC Plectin repeat.
Probab=25.67 E-value=22 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.1
Q ss_pred HHHHHHhcCCccccCccccc
Q 018975 252 ILKLQEENSGLIEPKRDLVV 271 (348)
Q Consensus 252 i~~~Q~~~ggiId~~~~~~~ 271 (348)
+++-|..-||||||+..--+
T Consensus 3 ll~~q~~~~Giidp~t~~~l 22 (38)
T smart00250 3 LLEAQSAIGGIIDPETGQKL 22 (38)
T ss_pred cchhhhheeEEEcCCCCCCc
Confidence 46678899999999855433
No 200
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=25.64 E-value=1.2e+02 Score=30.48 Aligned_cols=34 Identities=35% Similarity=0.728 Sum_probs=25.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.|-.+|+||...|-. ||-.+|-|.-..++.|...
T Consensus 264 ~pr~~~~~r~~~~~~--------~~e~lm~~eai~~S~~~~q 297 (482)
T KOG2789|consen 264 KPRSECPIRFLYFPG--------PFEYLMCCEAIICSECFVQ 297 (482)
T ss_pred CCcccCCchhhhcCc--------cHHHHHHHHHHHHHHHHhh
Confidence 455689999998854 5667778888888888755
No 201
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=5.7e+02 Score=25.54 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCC----------CCCC
Q 018975 50 AVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN----------HPDG 119 (348)
Q Consensus 50 i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n----------~~~~ 119 (348)
+.+.....+.|+...+- ..-+++.+++.|.......+-...|.++.-.+...+.-.|.... ....
T Consensus 231 ~a~g~laF~~~t~~sky-----~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~ 305 (389)
T KOG0396|consen 231 LAMGLLAFPKYTSSSKY-----LNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTPRCLNDESDNNPN 305 (389)
T ss_pred HHHHhhcCccccCcccc-----cCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccccccccccCCCCC
Confidence 34444445578776652 22356778888888777767777776665555544443333221 1123
Q ss_pred CCCcccccccc
Q 018975 120 DCPLCLYPLFR 130 (348)
Q Consensus 120 ~C~ICl~~f~~ 130 (348)
.||+|-..|..
T Consensus 306 ~CpvC~~~f~~ 316 (389)
T KOG0396|consen 306 NCPVCCEAFKP 316 (389)
T ss_pred CCCCcccccch
Confidence 78999999875
No 202
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=25.25 E-value=32 Score=29.13 Aligned_cols=12 Identities=58% Similarity=1.243 Sum_probs=9.4
Q ss_pred CCCCcccccccc
Q 018975 119 GDCPLCLYPLFR 130 (348)
Q Consensus 119 ~~C~ICl~~f~~ 130 (348)
.+||.|-.+++.
T Consensus 29 ~hCp~Cg~PLF~ 40 (131)
T COG1645 29 KHCPKCGTPLFR 40 (131)
T ss_pred hhCcccCCccee
Confidence 589999888753
No 203
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=24.84 E-value=47 Score=38.76 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=30.3
Q ss_pred hCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 113 AMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 113 e~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
.......-|.+|......++.. -+..|.-.||..|+..=+.
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~-------lc~~c~~~~h~~C~rp~~~ 1143 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKML-------LCDECLSGFHLFCLRPALS 1143 (1404)
T ss_pred ccccchhhhhhhhhcccchhhh-------hhHhhhhhHHHHhhhhhhc
Confidence 3345678999999987664432 2468899999999987654
No 204
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.58 E-value=78 Score=30.79 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=26.6
Q ss_pred hhCCCCCCCCCcccccccc-----CCCCccccCcccccCCCCcccH
Q 018975 112 SAMNHPDGDCPLCLYPLFR-----KDKNVEVLPFMKLMSCFHCFHS 152 (348)
Q Consensus 112 te~n~~~~~C~ICl~~f~~-----~~~~~~~~p~~k~~~C~H~FH~ 152 (348)
.+.|..--+||+=|.-+.- ........|++- +.|+|+-..
T Consensus 284 ~~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vY-l~CGHV~G~ 328 (429)
T KOG3842|consen 284 QEINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVY-LNCGHVHGY 328 (429)
T ss_pred HHHhccCCCCCcccceeecccccccccccccCCeEE-Eeccccccc
Confidence 3455556799999887643 223345578886 899998443
No 205
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=24.55 E-value=73 Score=26.62 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=18.6
Q ss_pred eEEEEEEEcCCCCCCCCCcccccC
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
-.+.|-|.+|++||..+|.-+...
T Consensus 42 ~~~dili~iP~gYP~~~~DmfY~~ 65 (122)
T PF14462_consen 42 NEVDILILIPPGYPDAPLDMFYVY 65 (122)
T ss_pred cceEEEEECCCCCCCCCCCcEEEC
Confidence 358899999999999988754333
No 206
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=24.34 E-value=46 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=14.2
Q ss_pred CCCCCCCCCcccCccchH
Q 018975 193 NMGTCPVCRKVFHVKDLE 210 (348)
Q Consensus 193 ~~~~CPvCR~~~~~~d~~ 210 (348)
..-.||||-+.+..+++.
T Consensus 344 pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 344 PTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred CeeeCccCCccccccchh
Confidence 344799999988888776
No 207
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=24.02 E-value=32 Score=29.45 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=11.8
Q ss_pred CCCCCCCCCCcccCc
Q 018975 192 GNMGTCPVCRKVFHV 206 (348)
Q Consensus 192 ~~~~~CPvCR~~~~~ 206 (348)
+....||.||..|+.
T Consensus 7 Gpei~CPhCRQ~ipA 21 (163)
T TIGR02652 7 GPEIRCPHCRQNIPA 21 (163)
T ss_pred CCcCcCchhhcccch
Confidence 345789999998865
No 208
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=24.01 E-value=1.2e+02 Score=21.26 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=25.7
Q ss_pred CcccccCC-CCCCHHHHHHHHHHHHHHHHHhcCCc
Q 018975 65 PRIDLIES-KGLDDQRQKHLISCIQDKAHELTSCL 98 (348)
Q Consensus 65 P~i~i~~~-~GL~~~~i~~L~~~L~~~~ee~~G~~ 98 (348)
|.|.+.-. .|.+.++.+.|.+.+...+.+.+|.+
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~ 35 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETLGAN 35 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444 68899999999999999888887743
No 209
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=24.00 E-value=32 Score=29.35 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.3
Q ss_pred CCCCCCCCCcccCc
Q 018975 193 NMGTCPVCRKVFHV 206 (348)
Q Consensus 193 ~~~~CPvCR~~~~~ 206 (348)
....||.||..|+.
T Consensus 5 pei~CPhCRq~ipA 18 (161)
T PF09654_consen 5 PEIQCPHCRQTIPA 18 (161)
T ss_pred CcCcCchhhcccch
Confidence 45689999998865
No 210
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=23.88 E-value=59 Score=31.96 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.0
Q ss_pred CCCCCCCCCcc
Q 018975 193 NMGTCPVCRKV 203 (348)
Q Consensus 193 ~~~~CPvCR~~ 203 (348)
.+..||.||..
T Consensus 66 qRKRCP~CRFQ 76 (475)
T KOG4218|consen 66 QRKRCPSCRFQ 76 (475)
T ss_pred hhccCCchhHH
Confidence 56789999974
No 211
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.73 E-value=41 Score=26.58 Aligned_cols=11 Identities=27% Similarity=1.168 Sum_probs=9.9
Q ss_pred ccHHHHHHHHH
Q 018975 150 FHSECIVRWWN 160 (348)
Q Consensus 150 FH~~Cl~~w~~ 160 (348)
||..||..|+.
T Consensus 43 FCRNCLs~Wy~ 53 (104)
T COG3492 43 FCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHH
Confidence 78999999986
No 212
>KOG3299 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.61 E-value=70 Score=29.06 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=35.1
Q ss_pred CCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCC
Q 018975 59 KYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115 (348)
Q Consensus 59 ~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n 115 (348)
.||...|.|.-.....+.-.+-..|-..+ ..-...|..|++.+.+..+..+....
T Consensus 2 ~yps~ap~i~e~~~v~~~~~~~~~l~~a~--~~~s~~~~~l~~~~~~~~~~~~~~~~ 56 (206)
T KOG3299|consen 2 DYPSSAPTIKELVGVEKELAKRKLLSNAL--VYISEIGDSLFLLWVEDPRDVLNKRA 56 (206)
T ss_pred CCCCCCCcHhHhhhHHHHHHHHHhhhhhh--HHHHhhhhhhhhhhhccHHHHHHHhH
Confidence 69999888875554444444333333344 44455577788888888877776554
No 213
>PLN02189 cellulose synthase
Probab=23.59 E-value=63 Score=36.36 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
...|.||.+.+..+.... +|+.+-.|.--.|..|.
T Consensus 34 ~~~C~iCgd~vg~~~~g~---~fvaC~~C~fpvCr~Cy 68 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGD---LFVACNECGFPVCRPCY 68 (1040)
T ss_pred CccccccccccCcCCCCC---EEEeeccCCCccccchh
Confidence 458999999876432221 68876677777999997
No 214
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=55 Score=27.75 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCCCCCccccc
Q 018975 50 AVIGIRASPKYPEHPPRIDLI 70 (348)
Q Consensus 50 i~L~i~lp~~YP~~~P~i~i~ 70 (348)
-.|.|...++||..||.+.+.
T Consensus 58 ysLKI~Cgp~YPe~PP~vrf~ 78 (138)
T KOG0896|consen 58 YSLKIECGPKYPELPPTVRFG 78 (138)
T ss_pred eeEEEecCCCCCCCCceeEEE
Confidence 478889999999999999753
No 215
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=22.35 E-value=23 Score=25.54 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=6.4
Q ss_pred CCCCCCCcccCc
Q 018975 195 GTCPVCRKVFHV 206 (348)
Q Consensus 195 ~~CPvCR~~~~~ 206 (348)
..||+|++++..
T Consensus 3 v~CP~C~k~~~~ 14 (57)
T PF03884_consen 3 VKCPICGKPVEW 14 (57)
T ss_dssp EE-TTT--EEE-
T ss_pred ccCCCCCCeecc
Confidence 579999998854
No 216
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.25 E-value=23 Score=34.31 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=8.0
Q ss_pred CCCCCccccc
Q 018975 118 DGDCPLCLYP 127 (348)
Q Consensus 118 ~~~C~ICl~~ 127 (348)
.+.||||-..
T Consensus 184 ~~~CPvCGs~ 193 (305)
T TIGR01562 184 RTLCPACGSP 193 (305)
T ss_pred CCcCCCCCCh
Confidence 4599999876
No 217
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=21.80 E-value=1.4e+02 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=25.2
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+.-..|.+.++.+.|.+.+...+.+.+|.
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~ 33 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEILGA 33 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 445555456778999999999999988887764
No 218
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=21.77 E-value=48 Score=23.45 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=7.4
Q ss_pred CCCCCCCCCCcccCc
Q 018975 192 GNMGTCPVCRKVFHV 206 (348)
Q Consensus 192 ~~~~~CPvCR~~~~~ 206 (348)
....+||+|...+.-
T Consensus 22 ~~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 22 EQPATCPICGAVIRQ 36 (54)
T ss_dssp S--EE-TTT--EESS
T ss_pred CCCCCCCcchhhccc
Confidence 455689999998843
No 219
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.75 E-value=44 Score=31.99 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCCCccccccccCCCCccccCcccccCC----CCcccHHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSC----FHCFHSECIVRWWN 160 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C----~H~FH~~Cl~~w~~ 160 (348)
.-|.+|-+-+.+.. |+ +| .|-||.-|-..-++
T Consensus 269 LcCTLC~ERLEDTH-------FV---QCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 269 LCCTLCHERLEDTH-------FV---QCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred eeehhhhhhhccCc-------ee---ecCCCcccceecccCHHHHH
Confidence 47999999986433 44 55 79999999877765
No 220
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=21.07 E-value=64 Score=19.83 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=15.8
Q ss_pred CCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
|..|-..+...+. .+ ..=+..||..|+
T Consensus 2 C~~C~~~i~~~~~------~~--~~~~~~~H~~Cf 28 (39)
T smart00132 2 CAGCGKPIRGGEL------VL--RALGKVWHPECF 28 (39)
T ss_pred ccccCCcccCCcE------EE--EeCCccccccCC
Confidence 7778777755321 11 123678888884
No 221
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.65 E-value=40 Score=30.79 Aligned_cols=17 Identities=47% Similarity=0.878 Sum_probs=13.3
Q ss_pred CCCCCCCCCcccCccch
Q 018975 193 NMGTCPVCRKVFHVKDL 209 (348)
Q Consensus 193 ~~~~CPvCR~~~~~~d~ 209 (348)
....||||...|..+.+
T Consensus 4 k~~~CPvC~~~F~~~~v 20 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKV 20 (214)
T ss_pred CceECCCCCCeeeeeEE
Confidence 45789999999977643
No 222
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=20.23 E-value=71 Score=25.57 Aligned_cols=14 Identities=36% Similarity=0.994 Sum_probs=10.9
Q ss_pred CCCCCCCCcccCcc
Q 018975 194 MGTCPVCRKVFHVK 207 (348)
Q Consensus 194 ~~~CPvCR~~~~~~ 207 (348)
.+.||.|+.+|+..
T Consensus 80 ~~~Cp~C~spFNp~ 93 (105)
T COG4357 80 CGSCPYCQSPFNPG 93 (105)
T ss_pred cCCCCCcCCCCCcc
Confidence 46699999999653
No 223
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.12 E-value=1.1e+02 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=25.9
Q ss_pred CCCCCccccccccCCC--C--ccccCcccccCCCCcccHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDK--N--VEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~--~--~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
...|--|+..|..... . ...........|.+.|+.+|=.=+
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fi 99 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFV 99 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhh
Confidence 3579999999965311 0 000112236899999999996544
No 224
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.01 E-value=1.2e+02 Score=21.10 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=24.4
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCL 98 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ 98 (348)
|.|.+.-..|.+.++.+.|.+.+.+...+.+|.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~ 34 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGIP 34 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 4455555667789999999999999888877754
Done!