Query 018975
Match_columns 348
No_of_seqs 272 out of 2029
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2day_A Ring finger protein 25; 99.9 2.5E-21 8.7E-26 161.7 12.3 113 3-115 10-126 (128)
2 1ukx_A GCN2, GCN2 EIF2alpha ki 99.8 2.2E-20 7.7E-25 157.6 11.8 114 3-117 12-132 (137)
3 2ebm_A RWD domain-containing p 99.8 8.3E-20 2.9E-24 152.4 12.2 109 3-113 12-120 (128)
4 2yz0_A Serine/threonine-protei 99.8 2.3E-19 7.8E-24 151.7 13.0 109 3-114 12-128 (138)
5 2ebk_A RWD domain-containing p 99.8 3E-18 1E-22 143.1 11.9 108 3-114 9-121 (128)
6 2dax_A Protein C21ORF6; RWD do 99.6 7.5E-15 2.6E-19 126.0 13.8 109 3-115 10-140 (152)
7 2daw_A RWD domain containing p 99.6 2E-14 6.7E-19 123.8 12.2 105 3-114 16-141 (154)
8 2ecl_A Ring-box protein 2; RNF 99.2 4.1E-12 1.4E-16 97.4 4.0 60 116-208 13-78 (81)
9 2ecm_A Ring finger and CHY zin 99.2 5.9E-12 2E-16 88.6 4.3 38 117-160 4-41 (55)
10 2ect_A Ring finger protein 126 99.2 3.7E-12 1.3E-16 96.4 3.2 55 116-209 13-67 (78)
11 2kiz_A E3 ubiquitin-protein li 99.2 7.7E-12 2.6E-16 92.4 4.6 52 116-206 12-63 (69)
12 1iym_A EL5; ring-H2 finger, ub 99.2 5.1E-12 1.8E-16 89.1 3.4 51 117-205 4-54 (55)
13 1v87_A Deltex protein 2; ring- 99.2 8.2E-12 2.8E-16 101.4 4.0 63 117-206 24-94 (114)
14 1x4j_A Ring finger protein 38; 99.2 4.5E-12 1.5E-16 95.3 2.1 51 117-206 22-72 (75)
15 2ep4_A Ring finger protein 24; 99.2 9.9E-12 3.4E-16 93.1 3.9 52 116-206 13-64 (74)
16 2l0b_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 98.7 2.2 51 117-206 39-89 (91)
17 3ng2_A RNF4, snurf, ring finge 99.2 4.9E-12 1.7E-16 93.7 1.0 60 116-210 8-67 (71)
18 2ea6_A Ring finger protein 4; 99.1 2.7E-11 9.2E-16 89.0 3.7 56 116-206 13-68 (69)
19 2xeu_A Ring finger protein 4; 99.1 8.6E-12 2.9E-16 90.3 0.7 58 118-210 3-60 (64)
20 2ecy_A TNF receptor-associated 99.1 3.4E-11 1.1E-15 88.3 3.8 52 117-209 14-65 (66)
21 3dpl_R Ring-box protein 1; ubi 99.1 4.9E-11 1.7E-15 96.2 4.6 59 116-207 35-102 (106)
22 2djb_A Polycomb group ring fin 99.1 4E-11 1.4E-15 89.5 3.6 52 117-209 14-65 (72)
23 4ayc_A E3 ubiquitin-protein li 99.1 5.4E-11 1.8E-15 100.1 4.5 48 119-208 54-101 (138)
24 2ct2_A Tripartite motif protei 99.1 5.9E-11 2E-15 91.5 4.3 60 116-210 13-72 (88)
25 3k1l_B Fancl; UBC, ring, RWD, 99.1 3.9E-10 1.3E-14 107.2 10.4 126 50-207 230-374 (381)
26 2d8t_A Dactylidin, ring finger 99.1 2.6E-11 8.8E-16 90.2 1.6 50 117-208 14-63 (71)
27 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.6E-15 84.7 4.7 56 118-210 3-59 (65)
28 2ysl_A Tripartite motif-contai 99.0 9.4E-11 3.2E-15 87.3 3.3 55 116-209 18-72 (73)
29 3lrq_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 92.9 3.5 51 119-209 23-73 (100)
30 1chc_A Equine herpes virus-1 r 99.0 1.5E-10 5.2E-15 85.0 3.8 49 117-206 4-52 (68)
31 1t1h_A Gspef-atpub14, armadill 99.0 1.4E-10 4.6E-15 87.7 3.4 51 117-208 7-57 (78)
32 2d8s_A Cellular modulator of i 99.0 1.8E-10 6.1E-15 88.2 3.9 53 117-207 14-71 (80)
33 4a0k_B E3 ubiquitin-protein li 99.0 5.1E-11 1.7E-15 97.7 0.6 58 116-206 46-112 (117)
34 2ecw_A Tripartite motif-contai 99.0 3.1E-10 1.1E-14 86.5 4.7 57 117-209 18-74 (85)
35 1e4u_A Transcriptional repress 99.0 3.4E-10 1.1E-14 86.2 4.7 57 116-209 9-65 (78)
36 2csy_A Zinc finger protein 183 99.0 2.5E-10 8.6E-15 87.0 3.9 47 117-205 14-60 (81)
37 2yur_A Retinoblastoma-binding 99.0 2.5E-10 8.7E-15 85.6 3.6 34 117-160 14-48 (74)
38 3fl2_A E3 ubiquitin-protein li 99.0 4.2E-10 1.4E-14 92.7 5.1 47 119-206 53-99 (124)
39 2ecv_A Tripartite motif-contai 99.0 3.8E-10 1.3E-14 86.0 4.4 58 116-209 17-74 (85)
40 2egp_A Tripartite motif-contai 99.0 6.2E-11 2.1E-15 89.6 -0.3 59 117-210 11-69 (79)
41 2ecn_A Ring finger protein 141 99.0 7.2E-11 2.5E-15 87.3 0.0 50 116-208 13-62 (70)
42 2y43_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 89.3 3.4 49 119-208 23-71 (99)
43 1z6u_A NP95-like ring finger p 98.9 2.2E-09 7.4E-14 91.7 7.9 48 119-207 79-126 (150)
44 1jm7_A BRCA1, breast cancer ty 98.9 1.6E-09 5.6E-14 87.1 6.3 51 119-208 22-72 (112)
45 2ct0_A Non-SMC element 1 homol 98.9 7.9E-10 2.7E-14 83.2 3.3 51 118-207 15-65 (74)
46 2ckl_B Ubiquitin ligase protei 98.9 1.2E-09 4.1E-14 94.4 4.1 49 119-207 55-103 (165)
47 4ap4_A E3 ubiquitin ligase RNF 98.8 9.2E-10 3.1E-14 90.8 2.5 60 116-210 5-64 (133)
48 2ckl_A Polycomb group ring fin 98.8 1.3E-09 4.4E-14 87.6 3.0 49 118-207 15-63 (108)
49 3ztg_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 84.6 3.2 34 117-160 12-46 (92)
50 2kr4_A Ubiquitin conjugation f 98.8 1.2E-09 4.2E-14 84.3 2.7 51 117-209 13-63 (85)
51 1rmd_A RAG1; V(D)J recombinati 98.8 1.9E-09 6.4E-14 87.7 3.4 50 119-209 24-73 (116)
52 2ysj_A Tripartite motif-contai 98.8 3E-09 1E-13 76.9 3.7 35 116-160 18-52 (63)
53 2ecj_A Tripartite motif-contai 98.8 3.6E-09 1.2E-13 74.9 4.0 35 116-160 13-47 (58)
54 2kre_A Ubiquitin conjugation f 98.8 1.5E-09 5E-14 86.5 1.7 51 117-209 28-78 (100)
55 4ap4_A E3 ubiquitin ligase RNF 98.8 6.8E-10 2.3E-14 91.6 -0.4 60 116-210 70-129 (133)
56 3hct_A TNF receptor-associated 98.8 2.4E-09 8.4E-14 87.4 2.7 51 117-208 17-67 (118)
57 1wgm_A Ubiquitin conjugation f 98.8 2.2E-09 7.5E-14 85.2 2.3 51 117-209 21-72 (98)
58 3l11_A E3 ubiquitin-protein li 98.7 1.2E-09 4E-14 88.8 0.3 47 119-206 16-62 (115)
59 1jm7_B BARD1, BRCA1-associated 98.7 2.1E-09 7.3E-14 87.7 0.6 48 118-209 22-70 (117)
60 2y1n_A E3 ubiquitin-protein li 98.7 9.1E-09 3.1E-13 100.2 3.9 60 108-208 322-381 (389)
61 2c2l_A CHIP, carboxy terminus 98.7 6.1E-09 2.1E-13 96.4 2.2 52 117-209 207-258 (281)
62 1bor_A Transcription factor PM 98.6 6.9E-09 2.4E-13 73.6 1.7 32 117-158 5-36 (56)
63 3knv_A TNF receptor-associated 98.6 5.1E-09 1.8E-13 88.5 -0.4 34 117-160 30-63 (141)
64 2f42_A STIP1 homology and U-bo 98.6 2.7E-08 9.1E-13 87.3 4.0 52 117-209 105-156 (179)
65 2yu4_A E3 SUMO-protein ligase 98.5 4.7E-08 1.6E-12 76.7 3.9 34 117-160 6-40 (94)
66 1wim_A KIAA0161 protein; ring 98.5 4.4E-08 1.5E-12 76.7 2.9 62 118-210 5-70 (94)
67 3hcs_A TNF receptor-associated 98.5 5.2E-08 1.8E-12 84.4 2.7 52 117-209 17-68 (170)
68 2vje_B MDM4 protein; proto-onc 98.4 4.8E-08 1.7E-12 70.9 1.9 49 118-206 7-56 (63)
69 2vje_A E3 ubiquitin-protein li 98.4 7.1E-08 2.4E-12 70.3 2.3 49 118-206 8-57 (64)
70 4ic3_A E3 ubiquitin-protein li 98.4 7.9E-08 2.7E-12 72.0 1.9 30 119-158 25-55 (74)
71 2ecg_A Baculoviral IAP repeat- 98.3 2.5E-07 8.7E-12 69.3 3.7 29 119-157 26-55 (75)
72 3htk_C E3 SUMO-protein ligase 98.3 1.1E-07 3.9E-12 87.5 1.9 56 116-210 179-236 (267)
73 1vyx_A ORF K3, K3RING; zinc-bi 98.2 1E-06 3.6E-11 63.3 4.6 49 118-206 6-59 (60)
74 2bay_A PRE-mRNA splicing facto 98.1 7.4E-07 2.5E-11 64.3 2.2 50 119-210 4-54 (61)
75 2yho_A E3 ubiquitin-protein li 98.1 9.4E-07 3.2E-11 67.0 1.6 30 119-158 19-49 (79)
76 2ea5_A Cell growth regulator w 98.0 2.3E-06 8E-11 62.9 3.2 31 117-157 14-45 (68)
77 3vk6_A E3 ubiquitin-protein li 98.0 3.8E-06 1.3E-10 66.0 3.8 47 120-206 3-49 (101)
78 3t6p_A Baculoviral IAP repeat- 97.9 2.2E-06 7.6E-11 82.5 0.7 31 118-158 295-326 (345)
79 3nw0_A Non-structural maintena 97.7 3.2E-05 1.1E-09 70.7 5.2 93 73-207 131-230 (238)
80 2ko5_A Ring finger protein Z; 94.6 0.01 3.4E-07 45.8 1.1 47 117-207 27-74 (99)
81 1fxt_A Ubiquitin-conjugating e 94.5 0.099 3.4E-06 43.7 7.4 69 1-72 1-73 (149)
82 2a7l_A Hypothetical ubiquitin- 94.3 0.13 4.6E-06 42.5 7.7 67 4-72 25-95 (136)
83 2ayv_A Ubiquitin-conjugating e 94.2 0.11 3.7E-06 44.5 7.1 67 3-72 23-92 (166)
84 1z2u_A Ubiquitin-conjugating e 94.1 0.085 2.9E-06 44.2 6.2 68 2-72 5-75 (150)
85 1jat_A Ubiquitin-conjugating e 93.9 0.16 5.4E-06 42.8 7.4 67 3-72 7-76 (155)
86 2aak_A UBC1, ubiquitin conjuga 93.8 0.19 6.5E-06 42.1 7.7 67 4-72 7-75 (152)
87 1wzv_A Ubiquitin-conjugating e 93.7 0.23 7.9E-06 41.7 8.2 68 2-72 5-75 (155)
88 1zdn_A Ubiquitin-conjugating e 93.6 0.17 6E-06 42.7 7.2 67 4-72 16-84 (158)
89 2e2c_A Ubiquitin conjugating e 93.5 0.19 6.4E-06 42.4 7.2 66 4-72 12-80 (156)
90 4gpr_A Ubiquitin-conjugating e 93.4 0.14 4.9E-06 42.9 6.4 68 2-72 5-75 (151)
91 2c4o_A Ubiquitin-conjugating e 93.4 0.14 4.7E-06 43.7 6.2 67 3-72 21-90 (165)
92 1ayz_A UBC2, ubiquitin-conjuga 93.4 0.22 7.6E-06 42.6 7.5 65 4-72 7-75 (169)
93 2r0j_A Ubiquitin carrier prote 93.1 0.23 7.9E-06 41.5 7.1 66 4-72 4-72 (149)
94 2bep_A Ubiquitin-conjugating e 93.0 0.33 1.1E-05 41.0 8.1 66 4-72 11-82 (159)
95 2fo3_A Ubiquitin-conjugating e 93.0 0.25 8.6E-06 40.0 7.0 66 4-72 9-77 (125)
96 2c2v_B Ubiquitin-conjugating e 92.8 0.28 9.6E-06 41.2 7.2 66 4-72 8-76 (154)
97 2h2y_A Ubiquitin-conjugating e 92.7 0.28 9.7E-06 40.4 7.0 66 4-72 23-91 (136)
98 1yh2_A HSPC150 protein similar 92.6 0.29 9.9E-06 41.8 7.2 66 4-72 7-75 (169)
99 3bzh_A Ubiquitin-conjugating e 92.5 0.3 1E-05 42.8 7.2 67 4-72 51-119 (194)
100 3h8k_A Ubiquitin-conjugating e 92.2 0.26 8.8E-06 41.8 6.3 67 3-72 5-75 (164)
101 1i7k_A Ubiquitin-conjugating e 92.2 0.31 1.1E-05 42.1 6.9 66 4-72 33-101 (179)
102 1yrv_A Ubiquitin-conjugating l 92.2 0.38 1.3E-05 41.2 7.3 66 4-72 26-94 (169)
103 2f4w_A Ubiquitin-conjugating e 92.0 0.3 1E-05 42.5 6.6 66 4-72 17-85 (187)
104 2pwq_A Ubiquitin conjugating e 91.8 0.28 9.7E-06 43.7 6.3 65 4-72 26-94 (216)
105 2awf_A Ubiquitin-conjugating e 91.3 0.6 2.1E-05 40.0 7.7 66 3-72 19-89 (172)
106 3rz3_A Ubiquitin-conjugating e 91.3 0.54 1.8E-05 40.7 7.5 66 4-72 10-79 (183)
107 2f4z_A Tgtwinscan_2721 - E2 do 91.1 0.42 1.4E-05 41.8 6.6 66 4-72 35-116 (193)
108 1tte_A Ubiquitin-conjugating e 90.9 0.38 1.3E-05 42.9 6.2 67 2-72 3-74 (215)
109 2ucz_A UBC7, ubiquitin conjuga 90.7 0.5 1.7E-05 40.1 6.5 67 4-72 7-76 (165)
110 3rcz_B SUMO-conjugating enzyme 90.7 0.47 1.6E-05 40.3 6.4 67 4-72 13-86 (163)
111 3k9o_A Ubiquitin-conjugating e 90.6 0.78 2.7E-05 40.2 7.9 68 2-72 6-79 (201)
112 4ds2_A Ubiquitin-conjugating e 89.7 0.56 1.9E-05 39.9 6.1 68 3-72 10-93 (167)
113 2q0v_A Ubiquitin-conjugating e 89.0 1.1 3.8E-05 37.7 7.4 65 4-72 24-96 (156)
114 2grr_A Ubiquitin-conjugating e 88.9 0.52 1.8E-05 39.8 5.2 67 4-72 10-83 (161)
115 3fn1_B NEDD8-conjugating enzym 88.9 1 3.5E-05 38.2 7.1 66 4-72 17-85 (167)
116 1c4z_D UBCH7, ubiquitin conjug 88.7 0.39 1.3E-05 40.3 4.2 66 4-72 5-73 (154)
117 2onu_A Ubiquitin-conjugating e 88.7 0.66 2.2E-05 38.9 5.7 62 5-72 6-70 (152)
118 1jat_B Ubiquitin-conjugating e 88.6 1.3 4.6E-05 36.3 7.4 66 4-72 9-81 (138)
119 2a4d_A Ubiquitin-conjugating e 88.5 1.3 4.5E-05 37.5 7.4 64 5-72 29-100 (160)
120 2y9m_A Ubiquitin-conjugating e 88.3 1 3.4E-05 38.5 6.7 65 4-71 9-88 (172)
121 2gjd_A Ubiquitin-conjugating e 88.2 0.8 2.7E-05 38.5 5.9 65 4-71 7-79 (157)
122 2jun_A Midline-1; B-BOX, TRIM, 87.5 0.23 8E-06 38.2 2.0 34 118-158 3-36 (101)
123 3e46_A Ubiquitin-conjugating e 87.2 1.1 3.7E-05 40.9 6.5 66 4-72 60-131 (253)
124 3o2u_A NEDD8-conjugating enzym 87.0 0.92 3.1E-05 39.5 5.7 64 4-72 32-104 (190)
125 2z5d_A Ubiquitin-conjugating e 86.9 0.7 2.4E-05 39.9 4.8 63 4-72 28-92 (179)
126 4ddg_A Ubiquitin-conjugating e 86.8 1 3.5E-05 43.7 6.5 67 2-71 4-73 (399)
127 1zuo_A Hypothetical protein LO 86.4 0.57 1.9E-05 40.7 4.0 24 49-72 90-113 (186)
128 1y8x_A Ubiquitin-conjugating e 84.5 1.2 4.3E-05 37.5 5.2 64 4-72 9-75 (160)
129 3kpa_A Probable ubiquitin fold 84.1 0.73 2.5E-05 38.7 3.4 25 49-73 86-110 (168)
130 2nvu_C NEDD8-conjugating enzym 83.8 1.6 5.5E-05 37.6 5.6 64 4-72 29-95 (180)
131 2hlw_A Ubiquitin-conjugating e 81.8 1.9 6.6E-05 36.7 5.3 65 4-72 38-110 (170)
132 2z6o_A UFM1-conjugating enzyme 81.0 1 3.4E-05 38.5 3.1 24 49-72 84-107 (172)
133 1yf9_A Ubiquitin carrier prote 80.9 3.2 0.00011 35.3 6.4 64 4-72 15-79 (171)
134 3ceg_A Baculoviral IAP repeat- 79.6 3.4 0.00012 38.9 6.6 66 4-72 79-151 (323)
135 2l43_A N-teminal domain from h 79.4 0.29 1E-05 37.3 -0.6 60 117-211 24-83 (88)
136 1wil_A KIAA1045 protein; ring 77.4 6.9 0.00023 29.5 6.3 34 117-158 14-47 (89)
137 2vpb_A Hpygo1, pygopus homolog 76.9 1.4 4.7E-05 31.5 2.4 35 116-156 6-41 (65)
138 2lri_C Autoimmune regulator; Z 76.7 0.8 2.7E-05 32.9 1.1 34 116-159 10-43 (66)
139 2xb1_A Pygopus homolog 2, B-ce 73.5 1.4 4.7E-05 34.6 1.8 34 117-156 2-36 (105)
140 2kwj_A Zinc finger protein DPF 72.6 0.83 2.8E-05 36.3 0.3 41 119-159 2-42 (114)
141 1wep_A PHF8; structural genomi 67.3 5.2 0.00018 29.4 3.7 32 118-156 12-43 (79)
142 1we9_A PHD finger family prote 66.6 2.7 9.1E-05 29.5 1.9 34 117-156 5-38 (64)
143 3vhs_A ATPase wrnip1; zinc fin 66.1 1.9 6.6E-05 24.9 0.8 19 192-210 4-22 (29)
144 3v43_A Histone acetyltransfera 63.3 14 0.00048 28.9 5.8 40 116-156 3-42 (112)
145 2kgg_A Histone demethylase jar 63.2 2.3 7.8E-05 28.8 0.9 32 119-156 3-35 (52)
146 3zqs_A E3 ubiquitin-protein li 63.1 32 0.0011 29.6 8.4 58 49-109 39-101 (186)
147 3lqh_A Histone-lysine N-methyl 63.0 3.2 0.00011 35.9 2.0 34 120-156 4-37 (183)
148 2cs3_A Protein C14ORF4, MY039 62.2 8.6 0.0003 28.7 3.9 34 117-160 14-51 (93)
149 2yt5_A Metal-response element- 58.8 3.5 0.00012 29.0 1.3 36 117-157 5-40 (66)
150 1zbd_B Rabphilin-3A; G protein 58.7 7.4 0.00025 31.8 3.4 76 74-155 9-87 (134)
151 3o36_A Transcription intermedi 57.5 1.4 4.9E-05 37.7 -1.1 31 118-158 4-34 (184)
152 2lv9_A Histone-lysine N-methyl 57.0 6.9 0.00024 30.1 2.8 30 119-156 29-58 (98)
153 3r3q_A Suppressor protein STP2 56.4 6.7 0.00023 33.2 2.9 23 49-71 82-104 (162)
154 1weo_A Cellulose synthase, cat 55.3 26 0.00088 26.6 5.6 54 118-205 16-69 (93)
155 2zet_C Melanophilin; complex, 55.1 25 0.00084 29.3 6.1 80 71-155 13-100 (153)
156 3i2d_A E3 SUMO-protein ligase 53.3 8.7 0.0003 36.8 3.4 17 193-209 287-303 (371)
157 1mm2_A MI2-beta; PHD, zinc fin 53.1 3.4 0.00012 28.9 0.4 31 117-157 8-38 (61)
158 3obq_A Tumor susceptibility ge 53.0 8.7 0.0003 31.9 3.0 23 49-71 70-92 (146)
159 3m62_A Ubiquitin conjugation f 50.1 28 0.00095 37.5 7.0 51 117-209 890-941 (968)
160 2ysm_A Myeloid/lymphoid or mix 49.6 3.2 0.00011 32.5 -0.2 35 117-158 6-40 (111)
161 3u5n_A E3 ubiquitin-protein li 48.0 2.3 7.9E-05 37.2 -1.5 32 117-158 6-37 (207)
162 3asl_A E3 ubiquitin-protein li 47.8 3.5 0.00012 29.7 -0.2 16 142-157 35-50 (70)
163 2o35_A Hypothetical protein DU 47.2 7.8 0.00027 30.0 1.6 11 150-160 43-53 (105)
164 3ask_A E3 ubiquitin-protein li 47.0 4.2 0.00014 36.3 0.1 17 141-157 190-206 (226)
165 4fo9_A E3 SUMO-protein ligase 46.9 13 0.00044 35.5 3.5 18 193-210 253-270 (360)
166 3fyb_A Protein of unknown func 46.6 8.1 0.00028 29.9 1.6 11 150-160 42-52 (104)
167 1f62_A Transcription factor WS 46.0 14 0.00049 24.3 2.7 31 120-157 2-32 (51)
168 2e6s_A E3 ubiquitin-protein li 45.8 4.2 0.00014 30.0 -0.1 16 142-157 43-58 (77)
169 3vth_A Hydrogenase maturation 45.2 13 0.00043 39.2 3.4 42 118-159 111-172 (761)
170 1z60_A TFIIH basal transcripti 45.2 9.5 0.00033 26.7 1.7 30 119-155 16-45 (59)
171 3zyq_A Hepatocyte growth facto 41.9 45 0.0015 29.3 6.1 36 116-157 162-197 (226)
172 3ql9_A Transcriptional regulat 40.9 31 0.0011 27.9 4.4 32 117-158 56-87 (129)
173 1zfo_A LAsp-1; LIM domain, zin 40.7 11 0.00039 22.4 1.3 29 118-155 3-31 (31)
174 3v43_A Histone acetyltransfera 40.1 4.8 0.00016 31.7 -0.6 32 120-157 63-94 (112)
175 2k16_A Transcription initiatio 40.0 14 0.00047 26.6 2.0 33 118-157 18-50 (75)
176 2ku3_A Bromodomain-containing 39.2 24 0.00083 25.3 3.2 36 116-156 14-49 (71)
177 2ro1_A Transcription intermedi 37.6 5.5 0.00019 34.3 -0.6 30 118-157 2-31 (189)
178 2lbm_A Transcriptional regulat 37.2 20 0.00069 29.5 2.8 33 117-159 62-94 (142)
179 1wev_A Riken cDNA 1110020M19; 37.0 12 0.00041 28.1 1.3 35 118-157 16-50 (88)
180 1wd2_A Ariadne-1 protein homol 35.3 6.2 0.00021 27.6 -0.6 38 118-159 6-45 (60)
181 2jvx_A NF-kappa-B essential mo 35.2 11 0.00039 22.2 0.7 13 194-206 3-15 (28)
182 3mpx_A FYVE, rhogef and PH dom 34.9 14 0.00049 35.3 1.8 36 118-159 375-410 (434)
183 2jmo_A Parkin; IBR, E3 ligase, 33.2 11 0.00036 27.8 0.4 37 118-158 25-68 (80)
184 3mjh_B Early endosome antigen 33.0 10 0.00036 23.4 0.3 13 195-207 6-18 (34)
185 1dvp_A HRS, hepatocyte growth 31.7 75 0.0026 27.5 5.8 35 117-157 160-194 (220)
186 2gmg_A Hypothetical protein PF 31.6 9.8 0.00033 29.8 -0.0 11 193-203 83-93 (105)
187 1weu_A Inhibitor of growth fam 31.3 24 0.0008 26.8 2.1 12 193-204 75-86 (91)
188 4g9i_A Hydrogenase maturation 30.5 28 0.00097 36.5 3.3 44 117-160 105-168 (772)
189 2ri7_A Nucleosome-remodeling f 29.6 21 0.00073 29.8 1.8 32 118-156 8-39 (174)
190 1joc_A EEA1, early endosomal a 27.0 1.1E+02 0.0039 24.1 5.6 34 118-157 69-102 (125)
191 2puy_A PHD finger protein 21A; 26.9 28 0.00094 23.8 1.7 31 117-157 4-34 (60)
192 3qc5_X Platelet binding protei 26.9 99 0.0034 29.1 5.8 41 48-90 270-310 (360)
193 3m20_A 4-oxalocrotonate tautom 25.8 69 0.0024 21.6 3.7 32 65-97 1-32 (62)
194 2l5u_A Chromodomain-helicase-D 25.5 42 0.0014 23.1 2.4 31 117-157 10-40 (61)
195 3ttc_A HYPF, transcriptional r 25.3 29 0.001 35.7 2.2 44 117-160 16-79 (657)
196 1xwh_A Autoimmune regulator; P 25.1 24 0.00083 24.7 1.1 31 117-157 7-37 (66)
197 2x4k_A 4-oxalocrotonate tautom 25.0 59 0.002 21.3 3.1 35 64-98 3-37 (63)
198 2ct7_A Ring finger protein 31; 24.6 8.7 0.0003 28.6 -1.5 35 120-158 27-61 (86)
199 1fp0_A KAP-1 corepressor; PHD 24.4 13 0.00044 28.1 -0.5 31 117-157 24-54 (88)
200 2opa_A Probable tautomerase YW 24.3 62 0.0021 21.3 3.1 33 65-97 1-33 (61)
201 1otf_A 4-oxalocrotonate tautom 23.9 63 0.0022 21.3 3.1 33 65-97 1-33 (62)
202 2e6r_A Jumonji/ARID domain-con 23.7 22 0.00074 26.9 0.6 34 117-157 15-48 (92)
203 1wem_A Death associated transc 23.4 58 0.002 23.2 2.9 30 119-156 17-46 (76)
204 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.6 52 0.0018 25.5 2.8 13 143-155 5-17 (140)
205 1wyh_A SLIM 2, skeletal muscle 22.5 56 0.0019 22.5 2.7 30 118-155 5-34 (72)
206 3ry0_A Putative tautomerase; o 22.5 70 0.0024 21.7 3.1 34 65-98 1-34 (65)
207 3abf_A 4-oxalocrotonate tautom 22.3 62 0.0021 21.5 2.8 33 65-97 2-34 (64)
208 3m21_A Probable tautomerase HP 21.0 81 0.0028 21.5 3.3 34 65-98 1-37 (67)
209 1vfy_A Phosphatidylinositol-3- 20.7 52 0.0018 23.4 2.2 34 117-156 10-43 (73)
210 2yql_A PHD finger protein 21A; 20.1 30 0.001 23.3 0.7 31 117-157 8-38 (56)
211 2jne_A Hypothetical protein YF 20.1 4.6 0.00016 31.2 -3.8 13 193-205 60-72 (101)
No 1
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=99.86 E-value=2.5e-21 Score=161.67 Aligned_cols=113 Identities=23% Similarity=0.387 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhcCCCceeccC----CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHH
Q 018975 3 EEEVAMELEAVQAVYGDECVVLDS----YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQ 78 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~~----~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~ 78 (348)
.|+|++|||||+|||+|+|.+... .+..|.|+|.|...++....++.+.|.|.+|++||+.+|.|.+.+.+||++.
T Consensus 10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~ 89 (128)
T 2day_A 10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDE 89 (128)
T ss_dssp CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHH
T ss_pred HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHH
Confidence 468999999999999999988864 4678999998876554445678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCC
Q 018975 79 RQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115 (348)
Q Consensus 79 ~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n 115 (348)
++..|.+.|...++++.|++|+|+|+++++++|.+.|
T Consensus 90 ~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~n 126 (128)
T 2day_A 90 QIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGPS 126 (128)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998876
No 2
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=99.83 E-value=2.2e-20 Score=157.60 Aligned_cols=114 Identities=26% Similarity=0.475 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhcCCCceeccCC-------CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVLDSY-------PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGL 75 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~~~-------~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL 75 (348)
.|+|++|||||+|||+|+|.+++.. +..|.|+|.|...++ ...++.+.|.|.+|++||+.+|.|.+.+++||
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~L 90 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAG-EEVYVQVELRVKCPPTYPDVVPEIDLKNAKGL 90 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCS-SSCSCEEEEEECCCTTTTSSCCCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCC-cccceEEEEEEECCCCCCCCCCcEEEecCCCC
Confidence 4789999999999999999887642 578999998743222 33468899999999999999999999889999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCCCC
Q 018975 76 DDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHP 117 (348)
Q Consensus 76 ~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n~~ 117 (348)
+..++..|.+.|...++++.|++|+|+++++++++|.+.+.|
T Consensus 91 ~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~p 132 (137)
T 1ukx_A 91 SNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKS 132 (137)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999998755
No 3
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=152.42 Aligned_cols=109 Identities=24% Similarity=0.446 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhcCCCceeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHH
Q 018975 3 EEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKH 82 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~ 82 (348)
.|+|++|||||+|||+|+|.++...+..|.|+|.+..++. ..++.+.|.|.+|++||+.+|.|.+...+||+...+..
T Consensus 12 ~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~--~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~ 89 (128)
T 2ebm_A 12 GEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGEN--DETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSD 89 (128)
T ss_dssp HHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTT--SCCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCC--cCceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHH
Confidence 4889999999999999999988777789999998765432 34678999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhhh
Q 018975 83 LISCIQDKAHELTSCLMLVALCEEAVAKLSA 113 (348)
Q Consensus 83 L~~~L~~~~ee~~G~~ml~elie~~kE~Lte 113 (348)
|.+.|.+.++++.|++|+|++++++++++.+
T Consensus 90 L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e 120 (128)
T 2ebm_A 90 ILKLLALQAEENLGMVMIFTLVTAVQEKLNE 120 (128)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 4
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-19 Score=151.72 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhcCCCceeccC--------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVLDS--------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKG 74 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~~--------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~G 74 (348)
.|+|++|||||+|||+|+|.+++. .+..|.|+|.+..+ ...++.+.|.|.+|++||..+|.|.+.+.+|
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~---~~~~~~~~L~~~~p~~YP~~~P~i~l~~~~~ 88 (138)
T 2yz0_A 12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK---EPVESSITLHFAMTPMYPYTAPEIEFKNVQN 88 (138)
T ss_dssp HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC---SSCCCEEEEEEECCSSTTSSCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC---CCCceEEEEEEECCCCCCCCCCeEEEecCCC
Confidence 468999999999999999988865 25789999987543 2346899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhC
Q 018975 75 LDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114 (348)
Q Consensus 75 L~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~ 114 (348)
|++.++..|.+.|...++++.|++|+|++++++++++.+.
T Consensus 89 L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 128 (138)
T 2yz0_A 89 VMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128 (138)
T ss_dssp CCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 5
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=143.07 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhcCC--CceeccCC---CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCH
Q 018975 3 EEEVAMELEAVQAVYGD--ECVVLDSY---PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDD 77 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~d--d~~v~~~~---~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~ 77 (348)
.|+|.+|||||+|||++ +|.+.... +..|.|+|.+....+ ..+.+.|.|.+|++||+.+|.|.+. ++||++
T Consensus 9 ~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~---~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~ 84 (128)
T 2ebk_A 9 AEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMD---ADIPLELVFHLPVNYPSCLPGISIN-SEQLTR 84 (128)
T ss_dssp CHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTT---CCCEEEEEEEECSSTTSSCCCCCCC-CSSSCH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCC---CCeEEEEEEECCCCCCCCCCeEEEE-hhhCCH
Confidence 37899999999999998 88877633 358889988754322 3578999999999999999999987 789999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhC
Q 018975 78 QRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114 (348)
Q Consensus 78 ~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~ 114 (348)
.++..|.+.|.+.++++.|++|+|++++++++++.+.
T Consensus 85 ~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 121 (128)
T 2ebk_A 85 AQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHI 121 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.61 E-value=7.5e-15 Score=126.04 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhcC--CCceeccC----------------CC---CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCC
Q 018975 3 EEEVAMELEAVQAVYG--DECVVLDS----------------YP---PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYP 61 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~--dd~~v~~~----------------~~---~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP 61 (348)
.|+|.+|||||+|||+ |+|.+.+. .| ..|.|++.+...+ ...+.+.|.|.+|++||
T Consensus 10 ~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~---~~~~~l~L~v~lP~~YP 86 (152)
T 2dax_A 10 AEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSD---EKMAMFSLACILPFKYP 86 (152)
T ss_dssp HHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECST---TCEEEEEEEEEECSSTT
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCC---ccCceEEEEEECCCCCC
Confidence 4789999999999999 88887653 12 2777877654322 24678999999999999
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHHHH-HhcCCchhhHHHHHHHHHhhhCC
Q 018975 62 EHPPRIDLIESKGLDDQRQKHLISCIQDKAH-ELTSCLMLVALCEEAVAKLSAMN 115 (348)
Q Consensus 62 ~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~e-e~~G~~ml~elie~~kE~Lte~n 115 (348)
+.+|.|.+... +++..+...|.+.|...++ ++.|++|+|++++++++++...-
T Consensus 87 ~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~ 140 (152)
T 2dax_A 87 AVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYV 140 (152)
T ss_dssp SSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 99999998765 5888888888888887775 58899999999999999988753
No 7
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.56 E-value=2e-14 Score=123.80 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhcC--CCceeccC----------------CCC--eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCC
Q 018975 3 EEEVAMELEAVQAVYG--DECVVLDS----------------YPP--HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPE 62 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~--dd~~v~~~----------------~~~--~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~ 62 (348)
.|+|.+|||||+|||+ ++|.+.+. .|. .|.|.|..... ...+.|.|.+|.+||+
T Consensus 16 ~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~------~~~i~L~v~lP~~YP~ 89 (154)
T 2daw_A 16 LQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP------KVKIDLQVTMPHSYPY 89 (154)
T ss_dssp HHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTT------TEEEEEEEEECSSTTS
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCC------CceEEEEEEcCCCCCC
Confidence 4789999999999999 88887641 132 55665554321 2478999999999999
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhhhC
Q 018975 63 HPPRIDLIESKGLDDQRQKHLISCIQDKAHEL-TSCLMLVALCEEAVAKLSAM 114 (348)
Q Consensus 63 ~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~-~G~~ml~elie~~kE~Lte~ 114 (348)
.+|.|.+... |++..+...|.+.|...+++. .|++|+|.+++++++++...
T Consensus 90 ~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~ 141 (154)
T 2daw_A 90 LALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASY 141 (154)
T ss_dssp SCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHH
T ss_pred CCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999998776 899999999999999888776 69999999999999988764
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.1e-12 Score=97.37 Aligned_cols=60 Identities=22% Similarity=0.558 Sum_probs=41.2
Q ss_pred CCCCCCCccccccccC------CCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCC
Q 018975 116 HPDGDCPLCLYPLFRK------DKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGP 189 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~------~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (348)
..+..|+||+..|... +......+. .++.|+|.||..||.+|+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~-~~~~C~H~FH~~Ci~~Wl~----------------------------- 62 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVV-VWGECNHSFHNCCMSLWVK----------------------------- 62 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCE-EEETTSCEEEHHHHHHHTT-----------------------------
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEE-EeCCCCCccChHHHHHHHH-----------------------------
Confidence 4567899999998641 000001122 2357999999999999974
Q ss_pred CCCCCCCCCCCCcccCccc
Q 018975 190 IDGNMGTCPVCRKVFHVKD 208 (348)
Q Consensus 190 ~~~~~~~CPvCR~~~~~~d 208 (348)
.+.+||+||..+...+
T Consensus 63 ---~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 63 ---QNNRCPLCQQDWVVQR 78 (81)
T ss_dssp ---TCCBCTTTCCBCCEEE
T ss_pred ---hCCCCCCcCCCcchhh
Confidence 3468999999987654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.23 E-value=5.9e-12 Score=88.65 Aligned_cols=38 Identities=21% Similarity=0.544 Sum_probs=30.5
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
....|+||++.|...+.. . ..++|+|.||..||.+|+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~-----~-~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVV-----A-HVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp CCCSCTTTCCCCCTTTSC-----E-EECTTSCEEETTHHHHHHH
T ss_pred CCCcCcccChhhcCCCcC-----e-EecCCCCcccHHHHHHHHH
Confidence 457899999999654432 2 3489999999999999986
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.22 E-value=3.7e-12 Score=96.44 Aligned_cols=55 Identities=31% Similarity=0.773 Sum_probs=43.2
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||++.|...+. . ..++|+|.||..||.+|+. ...
T Consensus 13 ~~~~~C~IC~~~~~~~~~------~-~~~~C~H~fc~~Ci~~~~~--------------------------------~~~ 53 (78)
T 2ect_A 13 GSGLECPVCKEDYALGES------V-RQLPCNHLFHDSCIVPWLE--------------------------------QHD 53 (78)
T ss_dssp SSSCCCTTTTSCCCTTSC------E-EECTTSCEEETTTTHHHHT--------------------------------TTC
T ss_pred CCCCCCeeCCccccCCCC------E-EEeCCCCeecHHHHHHHHH--------------------------------cCC
Confidence 345799999999976442 2 2479999999999999974 346
Q ss_pred CCCCCCcccCccch
Q 018975 196 TCPVCRKVFHVKDL 209 (348)
Q Consensus 196 ~CPvCR~~~~~~d~ 209 (348)
.||+||..|...++
T Consensus 54 ~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 54 SCPVCRKSLTGQNT 67 (78)
T ss_dssp SCTTTCCCCCCSCS
T ss_pred cCcCcCCccCCccc
Confidence 89999999977643
No 11
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=7.7e-12 Score=92.38 Aligned_cols=52 Identities=27% Similarity=0.770 Sum_probs=41.0
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|..++. . ..++|+|.||..||..|+. ...
T Consensus 12 ~~~~~C~IC~~~~~~~~~------~-~~~~C~H~fc~~Ci~~~~~--------------------------------~~~ 52 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGED------V-RRLPCMHLFHQVCVDQWLI--------------------------------TNK 52 (69)
T ss_dssp TCCCSBTTTTBCCCSSSC------E-EECTTSCEEEHHHHHHHHH--------------------------------HCS
T ss_pred CCCCCCeeCCccccCCCc------E-EEeCCCCHHHHHHHHHHHH--------------------------------cCC
Confidence 345789999999965443 2 2489999999999999986 234
Q ss_pred CCCCCCcccCc
Q 018975 196 TCPVCRKVFHV 206 (348)
Q Consensus 196 ~CPvCR~~~~~ 206 (348)
.||+||..|..
T Consensus 53 ~CP~Cr~~~~~ 63 (69)
T 2kiz_A 53 KCPICRVDIEA 63 (69)
T ss_dssp BCTTTCSBSCS
T ss_pred CCcCcCccccC
Confidence 69999999865
No 12
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.21 E-value=5.1e-12 Score=89.06 Aligned_cols=51 Identities=33% Similarity=0.728 Sum_probs=39.4
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||++.|..++.. ..+..|+|.||..||.+|++ ....
T Consensus 4 ~~~~C~IC~~~~~~~~~~------~~~~~C~H~f~~~Ci~~w~~--------------------------------~~~~ 45 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEA------RFLPRCGHGFHAECVDMWLG--------------------------------SHST 45 (55)
T ss_dssp CSCCCTTTCCCCCTTSCC------EECSSSCCEECTTHHHHTTT--------------------------------TCCS
T ss_pred CCCcCccCCccccCCCce------EECCCCCCcccHHHHHHHHH--------------------------------cCCc
Confidence 357999999999776542 22224999999999999964 3467
Q ss_pred CCCCCcccC
Q 018975 197 CPVCRKVFH 205 (348)
Q Consensus 197 CPvCR~~~~ 205 (348)
||+||..+.
T Consensus 46 CP~Cr~~~~ 54 (55)
T 1iym_A 46 CPLCRLTVV 54 (55)
T ss_dssp CSSSCCCSC
T ss_pred CcCCCCEeE
Confidence 999999874
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.19 E-value=8.2e-12 Score=101.37 Aligned_cols=63 Identities=22% Similarity=0.545 Sum_probs=42.8
Q ss_pred CCCCCCccccccccCCCC--------ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCC
Q 018975 117 PDGDCPLCLYPLFRKDKN--------VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLG 188 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~--------~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (348)
.+..|+|||+.|...... ....-+.++++|+|.||.+||..|+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------------------------ 79 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------------------------ 79 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------------------------
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------------------------
Confidence 457899999999653210 000012335899999999999999851110
Q ss_pred CCCCCCCCCCCCCcccCc
Q 018975 189 PIDGNMGTCPVCRKVFHV 206 (348)
Q Consensus 189 ~~~~~~~~CPvCR~~~~~ 206 (348)
.....||+||..+..
T Consensus 80 ---~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 80 ---DGSLQCPSCKTIYGE 94 (114)
T ss_dssp ---SSCCBCTTTCCBSSS
T ss_pred ---CCCCcCCCCCCccCC
Confidence 135689999999865
No 14
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=4.5e-12 Score=95.35 Aligned_cols=51 Identities=25% Similarity=0.735 Sum_probs=40.8
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|...+. + ..++|+|.||..||.+|+. ....
T Consensus 22 ~~~~C~IC~~~~~~~~~------~-~~l~C~H~fh~~Ci~~w~~--------------------------------~~~~ 62 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQL------L-RVLPCNHEFHAKCVDKWLK--------------------------------ANRT 62 (75)
T ss_dssp SCCEETTTTEECCBTCE------E-EEETTTEEEETTHHHHHHH--------------------------------HCSS
T ss_pred CCCCCeECCcccCCCCe------E-EEECCCCHhHHHHHHHHHH--------------------------------cCCc
Confidence 45789999999976542 2 2479999999999999986 2357
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||..+..
T Consensus 63 CP~Cr~~~~~ 72 (75)
T 1x4j_A 63 CPICRADSGP 72 (75)
T ss_dssp CTTTCCCCCC
T ss_pred CcCcCCcCCC
Confidence 9999999865
No 15
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=9.9e-12 Score=93.06 Aligned_cols=52 Identities=25% Similarity=0.732 Sum_probs=40.9
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|..... + ..++|+|.||..||.+|++ ...
T Consensus 13 ~~~~~C~IC~~~~~~~~~------~-~~~~C~H~f~~~Ci~~~~~--------------------------------~~~ 53 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDE------L-GICPCKHAFHRKCLIKWLE--------------------------------VRK 53 (74)
T ss_dssp CCSCBCSSSCCBCCSSSC------E-EEETTTEEEEHHHHHHHHH--------------------------------HCS
T ss_pred CCCCCCcCCCcccCCCCc------E-EEcCCCCEecHHHHHHHHH--------------------------------cCC
Confidence 345789999999976543 2 2369999999999999986 234
Q ss_pred CCCCCCcccCc
Q 018975 196 TCPVCRKVFHV 206 (348)
Q Consensus 196 ~CPvCR~~~~~ 206 (348)
.||+||.+|..
T Consensus 54 ~CP~Cr~~~~~ 64 (74)
T 2ep4_A 54 VCPLCNMPVLQ 64 (74)
T ss_dssp BCTTTCCBCSS
T ss_pred cCCCcCccccc
Confidence 79999998854
No 16
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.18 E-value=5.5e-12 Score=98.73 Aligned_cols=51 Identities=35% Similarity=0.870 Sum_probs=40.9
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|..++. . ..++|+|.||..||..|+. ....
T Consensus 39 ~~~~C~IC~~~~~~~~~------~-~~l~C~H~Fh~~Ci~~wl~--------------------------------~~~~ 79 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV------A-TELPCHHYFHKPCVSIWLQ--------------------------------KSGT 79 (91)
T ss_dssp SCSEETTTTEECCTTCE------E-EEETTTEEEEHHHHHHHHT--------------------------------TTCB
T ss_pred CCCCCcccChhhcCCCc------E-EecCCCChHHHHHHHHHHH--------------------------------cCCc
Confidence 45689999999976543 2 2479999999999999974 3468
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||..|..
T Consensus 80 CP~Cr~~~~~ 89 (91)
T 2l0b_A 80 CPVCRCMFPP 89 (91)
T ss_dssp CTTTCCBSSC
T ss_pred CcCcCccCCC
Confidence 9999998854
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.16 E-value=4.9e-12 Score=93.74 Aligned_cols=60 Identities=28% Similarity=0.540 Sum_probs=43.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||++.|....... . .+..++|+|.||..||.+|+. ...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~ 52 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NAN 52 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTT-C--CEEECTTSCEEEHHHHHHHHH--------------------------------HCS
T ss_pred CCCCCCcccChhhhcccccc-C--CeEeCCCCChHhHHHHHHHHH--------------------------------cCC
Confidence 34578999999986521000 0 113489999999999999986 335
Q ss_pred CCCCCCcccCccchH
Q 018975 196 TCPVCRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPvCR~~~~~~d~~ 210 (348)
.||+||..+..+++.
T Consensus 53 ~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 53 TCPTCRKKINHKRYH 67 (71)
T ss_dssp BCTTTCCBCCCCSCC
T ss_pred CCCCCCCccChhhee
Confidence 899999999876653
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=89.00 Aligned_cols=56 Identities=29% Similarity=0.559 Sum_probs=41.4
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|....... . ...+++|+|.||..||..|+. ...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~ 57 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NAN 57 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTT-C--CEEECSSSCEEEHHHHHHHHH--------------------------------HCS
T ss_pred CCCCCCcccCcccccccccc-C--CeEeCCCCChhcHHHHHHHHH--------------------------------cCC
Confidence 34678999999987532111 0 112489999999999999986 245
Q ss_pred CCCCCCcccCc
Q 018975 196 TCPVCRKVFHV 206 (348)
Q Consensus 196 ~CPvCR~~~~~ 206 (348)
.||+||.+|..
T Consensus 58 ~CP~Cr~~~~~ 68 (69)
T 2ea6_A 58 TCPTCRKKINH 68 (69)
T ss_dssp SCTTTCCCCCC
T ss_pred CCCCCCCccCc
Confidence 79999998854
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=8.6e-12 Score=90.33 Aligned_cols=58 Identities=29% Similarity=0.552 Sum_probs=42.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|+||+..|....... . ....++|+|.||..||.+|+. ....|
T Consensus 3 ~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~~C 47 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NANTC 47 (64)
T ss_dssp CCBCTTTCCBHHHHHHTT-C--CEEEETTSCEEEHHHHHHHHH--------------------------------HCSBC
T ss_pred CCCCCccChhhhCccccC-C--CEEeCCCCCchhHHHHHHHHH--------------------------------cCCCC
Confidence 578999999986521000 0 112489999999999999986 24589
Q ss_pred CCCCcccCccchH
Q 018975 198 PVCRKVFHVKDLE 210 (348)
Q Consensus 198 PvCR~~~~~~d~~ 210 (348)
|+||..+..+++.
T Consensus 48 P~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 48 PTCRKKINHKRYH 60 (64)
T ss_dssp TTTCCBCTTTCEE
T ss_pred CCCCccCCcccee
Confidence 9999999876653
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.4e-11 Score=88.25 Aligned_cols=52 Identities=19% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.+ |.+ ++|+|.||..||.+|++ .....
T Consensus 14 ~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~ 52 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS--------PKQ--TECGHRFCESCMAALLS-------------------------------SSSPK 52 (66)
T ss_dssp CCEECTTTCCEESS--------CCC--CSSSCCCCHHHHHHHHT-------------------------------TSSCC
T ss_pred cCCCCCCCChHhcC--------eeE--CCCCCHHHHHHHHHHHH-------------------------------hCcCC
Confidence 45689999999864 333 79999999999999974 24567
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++..+++
T Consensus 53 CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 53 CTACQESIVKDKV 65 (66)
T ss_dssp CTTTCCCCCTTTC
T ss_pred CCCCCcCCChhhc
Confidence 9999999977653
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.10 E-value=4.9e-11 Score=96.19 Aligned_cols=59 Identities=22% Similarity=0.502 Sum_probs=42.4
Q ss_pred CCCCCCCccccccccCCC---------CccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCccccccccc
Q 018975 116 HPDGDCPLCLYPLFRKDK---------NVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDM 186 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~---------~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 186 (348)
.....|+||+..|...-. .+...+.. +++|+|.||.+||.+|+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~-~~~C~H~FH~~Ci~~Wl~-------------------------- 87 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVA-WGVCNHAFHFHCISRWLK-------------------------- 87 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEE-EETTSCEEEHHHHHHHHT--------------------------
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEe-ecccCcEECHHHHHHHHH--------------------------
Confidence 356899999999975310 11112333 479999999999999974
Q ss_pred CCCCCCCCCCCCCCCcccCcc
Q 018975 187 LGPIDGNMGTCPVCRKVFHVK 207 (348)
Q Consensus 187 ~~~~~~~~~~CPvCR~~~~~~ 207 (348)
.+.+||+||..+..+
T Consensus 88 ------~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 88 ------TRQVCPLDNREWEFQ 102 (106)
T ss_dssp ------TCSBCSSSCSBCCEE
T ss_pred ------cCCcCcCCCCcceee
Confidence 457899999988543
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4e-11 Score=89.46 Aligned_cols=52 Identities=31% Similarity=0.636 Sum_probs=41.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.+ |.+ +++|+|.||..||.+|++ ....
T Consensus 14 ~~~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~--------------------------------~~~~ 52 (72)
T 2djb_A 14 PYILCSICKGYLID--------ATT-ITECLHTFCKSCIVRHFY--------------------------------YSNR 52 (72)
T ss_dssp GGGSCTTTSSCCSS--------CEE-CSSSCCEECHHHHHHHHH--------------------------------HCSS
T ss_pred CCCCCCCCChHHHC--------cCE-ECCCCCHHHHHHHHHHHH--------------------------------cCCc
Confidence 34689999999864 333 359999999999999986 2467
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 53 CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 53 CPKCNIVVHQTQP 65 (72)
T ss_dssp CTTTCCCCCSSCS
T ss_pred CCCcCcccCcccc
Confidence 9999999977654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.09 E-value=5.4e-11 Score=100.12 Aligned_cols=48 Identities=31% Similarity=0.720 Sum_probs=39.5
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ ++|+|.||..||..|+. ....||
T Consensus 54 ~~C~iC~~~~~~--------~~~--~~CgH~fc~~Ci~~~~~--------------------------------~~~~CP 91 (138)
T 4ayc_A 54 LQCIICSEYFIE--------AVT--LNCAHSFCSYCINEWMK--------------------------------RKIECP 91 (138)
T ss_dssp SBCTTTCSBCSS--------EEE--ETTSCEEEHHHHHHHTT--------------------------------TCSBCT
T ss_pred CCCcccCcccCC--------ceE--CCCCCCccHHHHHHHHH--------------------------------cCCcCC
Confidence 589999999864 433 79999999999999974 446799
Q ss_pred CCCcccCccc
Q 018975 199 VCRKVFHVKD 208 (348)
Q Consensus 199 vCR~~~~~~d 208 (348)
+||.++....
T Consensus 92 ~Cr~~~~~~~ 101 (138)
T 4ayc_A 92 ICRKDIKSKT 101 (138)
T ss_dssp TTCCBCCCEE
T ss_pred CCCCcCCCCC
Confidence 9999997654
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-11 Score=91.45 Aligned_cols=60 Identities=25% Similarity=0.575 Sum_probs=45.2
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|...+.. | ..++|+|.||..||.+|++.. ....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~----~--~~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~~ 57 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLR----P--KLLHCGHTICRQCLEKLLASS-----------------------------INGV 57 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSC----E--EECSSSCEEEHHHHHHHHHHC-----------------------------SSCB
T ss_pred cCCCCCccCCccccccCCC----e--EECCCCChhhHHHHHHHHHcC-----------------------------CCCc
Confidence 3457899999999765421 3 247999999999999998611 1246
Q ss_pred CCCCCCcccCccchH
Q 018975 196 TCPVCRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPvCR~~~~~~d~~ 210 (348)
.||+||.++...++.
T Consensus 58 ~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 58 RCPFCSKITRITSLT 72 (88)
T ss_dssp CCTTTCCCBCCSSTT
T ss_pred CCCCCCCcccchhHH
Confidence 899999999877654
No 25
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.08 E-value=3.9e-10 Score=107.24 Aligned_cols=126 Identities=14% Similarity=0.368 Sum_probs=78.2
Q ss_pred EEEEEEc-CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhh---------------
Q 018975 50 AVIGIRA-SPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSA--------------- 113 (348)
Q Consensus 50 i~L~i~l-p~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte--------------- 113 (348)
+.|.|.+ .+..|...|.+.+..+ +..+..|...+......--- -..+.+.....|.-
T Consensus 230 vSl~IeV~DP~~Pr~lPe~~FlGp----d~~V~~Lr~~l~~Nl~~Wd~---d~si~eNL~~IL~i~~fP~p~~~~~~~~~ 302 (381)
T 3k1l_B 230 VYLKLTIADPFACIASMSLKIIGP----TEEVARLRHVLSDGLSNWDS---EMNIHKNLLRMFDLCYFPMPDWSDGPKLD 302 (381)
T ss_dssp EEEEEEESCTTSTTTTEEEEEESS----HHHHHHHHHHHHHHHHTCCT---TSCHHHHHHHHTTCSSCCCCCGGGCCSCT
T ss_pred eEEEEEeCCCCCCCcCceeEEECC----hhHhHHHHHHHhhhhhhcCc---cCCHHHHHHHHhCccccCCCccccccccc
Confidence 6777888 8899999999888655 23455555555554332221 11233333333322
Q ss_pred -CCCCCCCCCccccccccCCCCccccCcccc--cCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCC
Q 018975 114 -MNHPDGDCPLCLYPLFRKDKNVEVLPFMKL--MSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPI 190 (348)
Q Consensus 114 -~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~--~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (348)
......+|+||+..+.+++. +|-.++ ..|+|.||..||.+|++....... ..
T Consensus 303 e~ee~~~ECaICys~~l~~g~----lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRq---------------------SF 357 (381)
T 3k1l_B 303 EEDNEELRCNICFAYRLDGGE----VPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKT---------------------FL 357 (381)
T ss_dssp TCCCSCCSCSSSCCSSCTTCC----CCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSC---------------------TT
T ss_pred ccccCCccCcccceeecCCCC----CccccccCCccCCccchHHHHHHHHhCCCccc---------------------cc
Confidence 11234589999999876332 343333 489999999999999985443211 11
Q ss_pred CCCCCCCCCCCcccCcc
Q 018975 191 DGNMGTCPVCRKVFHVK 207 (348)
Q Consensus 191 ~~~~~~CPvCR~~~~~~ 207 (348)
+...+.||.||.+|..+
T Consensus 358 nvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 358 EVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp TCCEEECTTTCCEEEGG
T ss_pred cccCCCCCCCCCcCCcc
Confidence 23457899999999764
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.6e-11 Score=90.24 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=40.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |. .++|+|.||..||.+|+. ....
T Consensus 14 ~~~~C~IC~~~~~~--------~~--~~~CgH~fC~~Ci~~~~~--------------------------------~~~~ 51 (71)
T 2d8t_A 14 TVPECAICLQTCVH--------PV--SLPCKHVFCYLCVKGASW--------------------------------LGKR 51 (71)
T ss_dssp SCCBCSSSSSBCSS--------EE--EETTTEEEEHHHHHHCTT--------------------------------CSSB
T ss_pred CCCCCccCCcccCC--------CE--EccCCCHHHHHHHHHHHH--------------------------------CCCc
Confidence 45789999999853 22 379999999999999963 3468
Q ss_pred CCCCCcccCccc
Q 018975 197 CPVCRKVFHVKD 208 (348)
Q Consensus 197 CPvCR~~~~~~d 208 (348)
||+||..|..++
T Consensus 52 CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 52 CALCRQEIPEDF 63 (71)
T ss_dssp CSSSCCBCCHHH
T ss_pred CcCcCchhCHhh
Confidence 999999997654
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1.3e-10 Score=84.73 Aligned_cols=56 Identities=21% Similarity=0.520 Sum_probs=42.3
Q ss_pred CCCCCcccc-ccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLY-PLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~-~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...|+||+. .|..... +++ .++|+|.||..||.+|+. .....
T Consensus 3 ~~~C~IC~~~~~~~~~~-----~~~-~~~CgH~fC~~Ci~~~~~-------------------------------~~~~~ 45 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSL-----KLM-VNVCGHTLCESCVDLLFV-------------------------------RGAGN 45 (65)
T ss_dssp TTCCSTTTTHHHHCSSC-----CEE-ECTTCCCEEHHHHHHHHH-------------------------------TTSSS
T ss_pred CCcCCcCCCCccCCCcc-----Cee-cCCCCCHhHHHHHHHHHH-------------------------------cCCCc
Confidence 568999999 6754221 112 379999999999999975 23467
Q ss_pred CCCCCcccCccchH
Q 018975 197 CPVCRKVFHVKDLE 210 (348)
Q Consensus 197 CPvCR~~~~~~d~~ 210 (348)
||+||+++...++.
T Consensus 46 CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 46 CPECGTPLRKSNFR 59 (65)
T ss_dssp CTTTCCCCSSCCCE
T ss_pred CCCCCCccccccce
Confidence 99999999876653
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=9.4e-11 Score=87.27 Aligned_cols=55 Identities=25% Similarity=0.620 Sum_probs=42.2
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|.. |.+ ++|+|.||..||..|++ .. ....
T Consensus 18 ~~~~~C~IC~~~~~~--------~~~--~~CgH~fC~~Ci~~~~~---~~--------------------------~~~~ 58 (73)
T 2ysl_A 18 QEEVICPICLDILQK--------PVT--IDCGHNFCLKCITQIGE---TS--------------------------CGFF 58 (73)
T ss_dssp CCCCBCTTTCSBCSS--------EEE--CTTCCEEEHHHHHHHCS---SS--------------------------CSCC
T ss_pred ccCCEeccCCcccCC--------eEE--cCCCChhhHHHHHHHHH---cC--------------------------CCCC
Confidence 345789999999863 333 79999999999999963 10 2456
Q ss_pred CCCCCCcccCccch
Q 018975 196 TCPVCRKVFHVKDL 209 (348)
Q Consensus 196 ~CPvCR~~~~~~d~ 209 (348)
.||+||.++..+++
T Consensus 59 ~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 59 KCPLCKTSVRKNAI 72 (73)
T ss_dssp CCSSSCCCCCCCCC
T ss_pred CCCCCCCcCCcccC
Confidence 89999999977654
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=92.92 Aligned_cols=51 Identities=25% Similarity=0.600 Sum_probs=40.7
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||++.|.. |.+ +++|+|.||..||.+||. .....||
T Consensus 23 ~~C~IC~~~~~~--------p~~-~~~CgH~FC~~Ci~~~~~-------------------------------~~~~~CP 62 (100)
T 3lrq_A 23 FRCFICMEKLRD--------ARL-CPHCSKLCCFSCIRRWLT-------------------------------EQRAQCP 62 (100)
T ss_dssp TBCTTTCSBCSS--------EEE-CTTTCCEEEHHHHHHHHH-------------------------------HTCSBCT
T ss_pred CCCccCCccccC--------ccc-cCCCCChhhHHHHHHHHH-------------------------------HCcCCCC
Confidence 589999999964 333 379999999999999986 1225799
Q ss_pred CCCcccCccch
Q 018975 199 VCRKVFHVKDL 209 (348)
Q Consensus 199 vCR~~~~~~d~ 209 (348)
+||.++...++
T Consensus 63 ~Cr~~~~~~~l 73 (100)
T 3lrq_A 63 HCRAPLQLREL 73 (100)
T ss_dssp TTCCBCCGGGC
T ss_pred CCCCcCCHHHh
Confidence 99999976554
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.01 E-value=1.5e-10 Score=85.00 Aligned_cols=49 Identities=31% Similarity=0.721 Sum_probs=39.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |. ..++|+|.||..||.+|+. ....
T Consensus 4 ~~~~C~IC~~~~~~--------~~-~~~~C~H~fc~~Ci~~~~~--------------------------------~~~~ 42 (68)
T 1chc_A 4 VAERCPICLEDPSN--------YS-MALPCLHAFCYVCITRWIR--------------------------------QNPT 42 (68)
T ss_dssp CCCCCSSCCSCCCS--------CE-EETTTTEEESTTHHHHHHH--------------------------------HSCS
T ss_pred CCCCCeeCCccccC--------Cc-EecCCCCeeHHHHHHHHHh--------------------------------CcCc
Confidence 35789999999853 22 2489999999999999985 2357
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||.++..
T Consensus 43 CP~Cr~~~~~ 52 (68)
T 1chc_A 43 CPLCKVPVES 52 (68)
T ss_dssp TTTTCCCCCC
T ss_pred CcCCChhhHh
Confidence 9999999854
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.01 E-value=1.4e-10 Score=87.69 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=41.2
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.+ |.+ ++|+|.||..||.+|+. .....
T Consensus 7 ~~~~C~IC~~~~~~--------Pv~--~~CgH~fc~~Ci~~~~~-------------------------------~~~~~ 45 (78)
T 1t1h_A 7 EYFRCPISLELMKD--------PVI--VSTGQTYERSSIQKWLD-------------------------------AGHKT 45 (78)
T ss_dssp SSSSCTTTSCCCSS--------EEE--ETTTEEEEHHHHHHHHT-------------------------------TTCCB
T ss_pred ccCCCCCccccccC--------CEE--cCCCCeecHHHHHHHHH-------------------------------HCcCC
Confidence 35789999999864 444 79999999999999985 23568
Q ss_pred CCCCCcccCccc
Q 018975 197 CPVCRKVFHVKD 208 (348)
Q Consensus 197 CPvCR~~~~~~d 208 (348)
||+||.++...+
T Consensus 46 CP~C~~~~~~~~ 57 (78)
T 1t1h_A 46 CPKSQETLLHAG 57 (78)
T ss_dssp CTTTCCBCSSCC
T ss_pred CCCCcCCCChhh
Confidence 999999996643
No 32
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=88.18 Aligned_cols=53 Identities=19% Similarity=0.578 Sum_probs=40.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPID 191 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (348)
....|.|||..|..++. + +++|. |+||..||.+|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~------l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~----------------------------- 56 (80)
T 2d8s_A 14 SQDICRICHCEGDDESP------L--ITPCHCTGSLHFVHQACLQQWIKSS----------------------------- 56 (80)
T ss_dssp TSCCCSSSCCCCCSSSC------E--ECSSSCCSSSCCEETTHHHHHHHHH-----------------------------
T ss_pred CCCCCeEcCccccCCCe------e--EeccccCCcCCeeCHHHHHHHHhhC-----------------------------
Confidence 45789999999865432 3 37896 999999999998611
Q ss_pred CCCCCCCCCCcccCcc
Q 018975 192 GNMGTCPVCRKVFHVK 207 (348)
Q Consensus 192 ~~~~~CPvCR~~~~~~ 207 (348)
....||+||..+..+
T Consensus 57 -~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 57 -DTRCCELCKYEFIME 71 (80)
T ss_dssp -CCSBCSSSCCBCCCC
T ss_pred -CCCCCCCCCCeeecC
Confidence 235899999998553
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=5.1e-11 Score=97.66 Aligned_cols=58 Identities=22% Similarity=0.502 Sum_probs=1.6
Q ss_pred CCCCCCCccccccccCCC---------CccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCccccccccc
Q 018975 116 HPDGDCPLCLYPLFRKDK---------NVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDM 186 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~---------~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 186 (348)
.....|+||+..|..... ....++.+ .++|+|.||.+||.+|+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~-~~~C~H~FH~~CI~~Wl~-------------------------- 98 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVA-WGVCNHAFHFHCISRWLK-------------------------- 98 (117)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccc-cCCcCceEcHHHHHHHHH--------------------------
Confidence 456899999999965210 01112333 369999999999999985
Q ss_pred CCCCCCCCCCCCCCCcccCc
Q 018975 187 LGPIDGNMGTCPVCRKVFHV 206 (348)
Q Consensus 187 ~~~~~~~~~~CPvCR~~~~~ 206 (348)
.+.+||+||..+..
T Consensus 99 ------~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 99 ------TRQVCPLDNREWEF 112 (117)
T ss_dssp --------------------
T ss_pred ------cCCcCCCCCCeeee
Confidence 35689999998754
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=3.1e-10 Score=86.49 Aligned_cols=57 Identities=33% Similarity=0.714 Sum_probs=42.8
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |. .++|+|.||..||..|+..... ......
T Consensus 18 ~~~~C~IC~~~~~~--------p~--~~~CgH~fC~~Ci~~~~~~~~~--------------------------~~~~~~ 61 (85)
T 2ecw_A 18 EEVTCPICLELLKE--------PV--SADCNHSFCRACITLNYESNRN--------------------------TDGKGN 61 (85)
T ss_dssp TTTSCTTTCSCCSS--------CE--ECTTSCCBCHHHHHHHHHHSBC--------------------------TTSCBC
T ss_pred cCCCCcCCChhhCc--------ce--eCCCCCHHHHHHHHHHHHhccC--------------------------CCCCCC
Confidence 45799999999864 33 3799999999999999862110 023568
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||..+..+++
T Consensus 62 CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 62 CPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTCCCCCTTCC
T ss_pred CCCCCCcCCHHhC
Confidence 9999999976554
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.98 E-value=3.4e-10 Score=86.21 Aligned_cols=57 Identities=32% Similarity=0.589 Sum_probs=42.0
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....||||+++|...+.. |. -++|+|.||..||.+||+ ....
T Consensus 9 ~~~~~CpICle~~~~~d~~-----~~-p~~CGH~fC~~Cl~~~~~-------------------------------~~~~ 51 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDIN-----FF-PCTCGYQICRFCWHRIRT-------------------------------DENG 51 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTT-----CC-SSTTSCCCCHHHHHHHTT-------------------------------SSCS
T ss_pred ccCCcCCccCccCcccccc-----cc-ccCCCCCcCHHHHHHHHh-------------------------------cCCC
Confidence 3457899999998654321 11 135999999999999964 2346
Q ss_pred CCCCCCcccCccch
Q 018975 196 TCPVCRKVFHVKDL 209 (348)
Q Consensus 196 ~CPvCR~~~~~~d~ 209 (348)
.||+||+++...++
T Consensus 52 ~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 52 LCPACRKPYPEDPA 65 (78)
T ss_dssp BCTTTCCBCSSCSS
T ss_pred CCCCCCCccCCCch
Confidence 89999999977643
No 36
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=86.96 Aligned_cols=47 Identities=19% Similarity=0.498 Sum_probs=38.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |.+ ++|+|.||..||.+|+. ....
T Consensus 14 ~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~--------------------------------~~~~ 51 (81)
T 2csy_A 14 IPFRCFICRQAFQN--------PVV--TKCRHYFCESCALEHFR--------------------------------ATPR 51 (81)
T ss_dssp CCSBCSSSCSBCCS--------EEE--CTTSCEEEHHHHHHHHH--------------------------------HCSB
T ss_pred CCCCCcCCCchhcC--------eeE--ccCCCHhHHHHHHHHHH--------------------------------CCCc
Confidence 34689999999854 433 89999999999999986 2457
Q ss_pred CCCCCcccC
Q 018975 197 CPVCRKVFH 205 (348)
Q Consensus 197 CPvCR~~~~ 205 (348)
||+||.++.
T Consensus 52 CP~Cr~~~~ 60 (81)
T 2csy_A 52 CYICDQPTG 60 (81)
T ss_dssp CSSSCCBCC
T ss_pred CCCcCcccc
Confidence 999999985
No 37
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.97 E-value=2.5e-10 Score=85.60 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccC-CCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMS-CFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~-C~H~FH~~Cl~~w~~ 160 (348)
....|+||+..|.. |.+ ++ |+|.||..||.+|+.
T Consensus 14 ~~~~C~IC~~~~~~--------p~~--~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 14 DELLCLICKDIMTD--------AVV--IPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGGSCSSSCCCCTT--------CEE--CSSSCCEECTTHHHHHHH
T ss_pred CCCCCcCCChHHhC--------CeE--cCCCCCHHHHHHHHHHHH
Confidence 34689999999864 443 77 999999999999986
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=4.2e-10 Score=92.74 Aligned_cols=47 Identities=28% Similarity=0.620 Sum_probs=39.0
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ ++|+|.||..||.+||. .....||
T Consensus 53 ~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP 91 (124)
T 3fl2_A 53 FQCICCQELVFR--------PIT--TVCQHNVCKDCLDRSFR-------------------------------AQVFSCP 91 (124)
T ss_dssp TBCTTTSSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------TTCCBCT
T ss_pred CCCCcCChHHcC--------cEE--eeCCCcccHHHHHHHHh-------------------------------HCcCCCC
Confidence 589999999864 433 79999999999999986 2345899
Q ss_pred CCCcccCc
Q 018975 199 VCRKVFHV 206 (348)
Q Consensus 199 vCR~~~~~ 206 (348)
+||.++..
T Consensus 92 ~Cr~~~~~ 99 (124)
T 3fl2_A 92 ACRYDLGR 99 (124)
T ss_dssp TTCCBCCT
T ss_pred CCCccCCC
Confidence 99999965
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.8e-10 Score=86.00 Aligned_cols=58 Identities=26% Similarity=0.639 Sum_probs=43.5
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|.. |.+ ++|+|.||..||..|+...... ....
T Consensus 17 ~~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~~~~~~--------------------------~~~~ 60 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ--------PLS--LDCGHSFCQACLTANHKKSMLD--------------------------KGES 60 (85)
T ss_dssp CCCCCCTTTCSCCSS--------CBC--CSSSCCBCTTHHHHHHHHHHHT--------------------------TSCC
T ss_pred cCCCCCCCCCcccCC--------cee--CCCCCHHHHHHHHHHHHHhhcC--------------------------CCCC
Confidence 345799999999854 333 7999999999999998732111 1357
Q ss_pred CCCCCCcccCccch
Q 018975 196 TCPVCRKVFHVKDL 209 (348)
Q Consensus 196 ~CPvCR~~~~~~d~ 209 (348)
.||+||..+...++
T Consensus 61 ~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 61 SCPVCRISYQPENI 74 (85)
T ss_dssp CCTTTCCSSCSSSC
T ss_pred cCCCCCCccCHHhc
Confidence 89999999976554
No 40
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.96 E-value=6.2e-11 Score=89.57 Aligned_cols=59 Identities=27% Similarity=0.586 Sum_probs=42.9
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.+ |.+ ++|+|.||..||.+|+..... .......
T Consensus 11 ~~~~C~IC~~~~~~--------p~~--l~CgH~fC~~Ci~~~~~~~~~-------------------------~~~~~~~ 55 (79)
T 2egp_A 11 EEVTCPICLELLTE--------PLS--LDCGHSLCRACITVSNKEAVT-------------------------SMGGKSS 55 (79)
T ss_dssp CCCEETTTTEECSS--------CCC--CSSSCCCCHHHHSCCCCCCSS-------------------------SCCCCCC
T ss_pred cCCCCcCCCcccCC--------eeE--CCCCCHHHHHHHHHHHHhccc-------------------------CCCCCCc
Confidence 45789999999864 433 799999999999999641000 0023568
Q ss_pred CCCCCcccCccchH
Q 018975 197 CPVCRKVFHVKDLE 210 (348)
Q Consensus 197 CPvCR~~~~~~d~~ 210 (348)
||+||.++...++.
T Consensus 56 CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 56 CPVCGISYSFEHLQ 69 (79)
T ss_dssp CSSSCCCCCSSGGG
T ss_pred CCCCCCcCCHhhCC
Confidence 99999999876553
No 41
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=7.2e-11 Score=87.33 Aligned_cols=50 Identities=24% Similarity=0.718 Sum_probs=40.3
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|.. ..++|+|.||..||.+|+. ...
T Consensus 13 ~~~~~C~IC~~~~~~-----------~~~~CgH~fc~~Ci~~~~~--------------------------------~~~ 49 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----------LILPCAHSFCQKCIDKWSD--------------------------------RHR 49 (70)
T ss_dssp CCCCCCSSSCCSCCS-----------EEETTTEEECHHHHHHSSC--------------------------------CCS
T ss_pred CCCCCCeeCCcCccC-----------cccCCCCcccHHHHHHHHH--------------------------------CcC
Confidence 345799999999854 1389999999999999963 456
Q ss_pred CCCCCCcccCccc
Q 018975 196 TCPVCRKVFHVKD 208 (348)
Q Consensus 196 ~CPvCR~~~~~~d 208 (348)
.||+||.++...+
T Consensus 50 ~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 50 NCPICRLQMTGAN 62 (70)
T ss_dssp SCHHHHHCTTCCC
T ss_pred cCCCcCCcccCCC
Confidence 8999999997643
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=3.7e-10 Score=89.32 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=39.5
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ +++|+|.||..||.+|+. ....||
T Consensus 23 ~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~--------------------------------~~~~CP 61 (99)
T 2y43_A 23 LRCGICFEYFNI--------AMI-IPQCSHNYCSLCIRKFLS--------------------------------YKTQCP 61 (99)
T ss_dssp TBCTTTCSBCSS--------EEE-CTTTCCEEEHHHHHHHHT--------------------------------TCCBCT
T ss_pred CCcccCChhhCC--------cCE-ECCCCCHhhHHHHHHHHH--------------------------------CCCCCC
Confidence 589999999864 333 249999999999999974 346899
Q ss_pred CCCcccCccc
Q 018975 199 VCRKVFHVKD 208 (348)
Q Consensus 199 vCR~~~~~~d 208 (348)
+||..+...+
T Consensus 62 ~Cr~~~~~~~ 71 (99)
T 2y43_A 62 TCCVTVTEPD 71 (99)
T ss_dssp TTCCBCCGGG
T ss_pred CCCCcCChhh
Confidence 9999997644
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=91.73 Aligned_cols=48 Identities=25% Similarity=0.660 Sum_probs=39.5
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ ++|+|.||..||.+|+. .....||
T Consensus 79 ~~C~IC~~~~~~--------pv~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP 117 (150)
T 1z6u_A 79 FMCVCCQELVYQ--------PVT--TECFHNVCKDCLQRSFK-------------------------------AQVFSCP 117 (150)
T ss_dssp TBCTTTSSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------TTCCBCT
T ss_pred CEeecCChhhcC--------CEE--cCCCCchhHHHHHHHHH-------------------------------hCCCcCC
Confidence 589999999864 444 89999999999999986 2335799
Q ss_pred CCCcccCcc
Q 018975 199 VCRKVFHVK 207 (348)
Q Consensus 199 vCR~~~~~~ 207 (348)
+||.++...
T Consensus 118 ~Cr~~~~~~ 126 (150)
T 1z6u_A 118 ACRHDLGQN 126 (150)
T ss_dssp TTCCBCCTT
T ss_pred CCCccCCCC
Confidence 999999664
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=1.6e-09 Score=87.12 Aligned_cols=51 Identities=25% Similarity=0.675 Sum_probs=39.6
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ ++|+|.||..||..|+. .. .....||
T Consensus 22 ~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~---~~--------------------------~~~~~CP 62 (112)
T 1jm7_A 22 LECPICLELIKE--------PVS--TKCDHIFCKFCMLKLLN---QK--------------------------KGPSQCP 62 (112)
T ss_dssp TSCSSSCCCCSS--------CCB--CTTSCCCCSHHHHHHHH---SS--------------------------SSSCCCT
T ss_pred CCCcccChhhcC--------eEE--CCCCCHHHHHHHHHHHH---hC--------------------------CCCCCCc
Confidence 589999998853 333 79999999999999986 10 1235899
Q ss_pred CCCcccCccc
Q 018975 199 VCRKVFHVKD 208 (348)
Q Consensus 199 vCR~~~~~~d 208 (348)
+||.++...+
T Consensus 63 ~Cr~~~~~~~ 72 (112)
T 1jm7_A 63 LCKNDITKRS 72 (112)
T ss_dssp TTSCCCCTTT
T ss_pred CCCCcCCHhh
Confidence 9999997653
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=7.9e-10 Score=83.19 Aligned_cols=51 Identities=18% Similarity=0.493 Sum_probs=40.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|+||...|..+. ++..|+|.||.+||.+||+ . ....+|
T Consensus 15 i~~C~IC~~~i~~g~---------~C~~C~h~fH~~Ci~kWl~---~---------------------------~~~~~C 55 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ---------SCETCGIRMHLPCVAKYFQ---S---------------------------NAEPRC 55 (74)
T ss_dssp SCBCSSSCCBCSSSE---------ECSSSCCEECHHHHHHHST---T---------------------------CSSCCC
T ss_pred CCcCcchhhHcccCC---------ccCCCCchhhHHHHHHHHH---h---------------------------cCCCCC
Confidence 478999999997532 3459999999999999975 1 123689
Q ss_pred CCCCcccCcc
Q 018975 198 PVCRKVFHVK 207 (348)
Q Consensus 198 PvCR~~~~~~ 207 (348)
|+||..+..+
T Consensus 56 P~Cr~~w~~~ 65 (74)
T 2ct0_A 56 PHCNDYWPHE 65 (74)
T ss_dssp TTTCSCCCSC
T ss_pred CCCcCcCCCC
Confidence 9999988653
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=1.2e-09 Score=94.38 Aligned_cols=49 Identities=33% Similarity=0.694 Sum_probs=39.2
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ +++|+|.||..||..||. .....||
T Consensus 55 ~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP 94 (165)
T 2ckl_B 55 LMCPICLDMLKN--------TMT-TKECLHRFCADCIITALR-------------------------------SGNKECP 94 (165)
T ss_dssp HBCTTTSSBCSS--------EEE-ETTTCCEEEHHHHHHHHH-------------------------------TTCCBCT
T ss_pred CCCcccChHhhC--------cCE-eCCCCChhHHHHHHHHHH-------------------------------hCcCCCC
Confidence 489999999864 333 359999999999999986 2356799
Q ss_pred CCCcccCcc
Q 018975 199 VCRKVFHVK 207 (348)
Q Consensus 199 vCR~~~~~~ 207 (348)
+||.++...
T Consensus 95 ~Cr~~~~~~ 103 (165)
T 2ckl_B 95 TCRKKLVSK 103 (165)
T ss_dssp TTCCBCCSG
T ss_pred CCCCcCCCc
Confidence 999998543
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.83 E-value=9.2e-10 Score=90.79 Aligned_cols=60 Identities=28% Similarity=0.540 Sum_probs=43.4
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||++.|.+....+ . .+..++|+|.||..||.+|+. ...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~ 49 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NAN 49 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTT-C--CEEEETTCCEEEHHHHHHHHT--------------------------------TCS
T ss_pred CCCCCCcccChhhhCccccc-c--CeEecCCCChhhHHHHHHHHH--------------------------------hCC
Confidence 34679999999986520000 0 112489999999999999974 345
Q ss_pred CCCCCCcccCccchH
Q 018975 196 TCPVCRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPvCR~~~~~~d~~ 210 (348)
.||+||+.+...++.
T Consensus 50 ~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 50 TCPTCRKKINHKRYH 64 (133)
T ss_dssp BCTTTCCBCTTTCEE
T ss_pred CCCCCCCcCcccccc
Confidence 899999999776553
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.82 E-value=1.3e-09 Score=87.61 Aligned_cols=49 Identities=29% Similarity=0.656 Sum_probs=39.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|+||+..|.+ |.+ +++|+|.||..||..|+. ....|
T Consensus 15 ~~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~--------------------------------~~~~C 53 (108)
T 2ckl_A 15 HLMCVLCGGYFID--------ATT-IIECLHSFCKTCIVRYLE--------------------------------TSKYC 53 (108)
T ss_dssp GTBCTTTSSBCSS--------EEE-ETTTCCEEEHHHHHHHHT--------------------------------SCSBC
T ss_pred cCCCccCChHHhC--------cCE-eCCCCChhhHHHHHHHHH--------------------------------hCCcC
Confidence 4689999999864 433 249999999999999974 34689
Q ss_pred CCCCcccCcc
Q 018975 198 PVCRKVFHVK 207 (348)
Q Consensus 198 PvCR~~~~~~ 207 (348)
|+||..+...
T Consensus 54 P~Cr~~~~~~ 63 (108)
T 2ckl_A 54 PICDVQVHKT 63 (108)
T ss_dssp TTTCCBSCSS
T ss_pred cCCCcccccc
Confidence 9999998754
No 49
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=84.59 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=28.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccC-CCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMS-CFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~-C~H~FH~~Cl~~w~~ 160 (348)
....|+||+..|.+ |.+ ++ |+|.||..||..||.
T Consensus 12 ~~~~C~IC~~~~~~--------p~~--~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 12 DELLCLICKDIMTD--------AVV--IPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTTEETTTTEECSS--------CEE--CTTTCCEECHHHHHHHHH
T ss_pred cCCCCCCCChhhcC--------ceE--CCCCCCHHHHHHHHHHHH
Confidence 45789999999864 444 68 999999999999985
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=1.2e-09 Score=84.30 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=42.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....||||+..|.+ |.+ ++|+|.|+..||.+||. ...+
T Consensus 13 ~~~~CpI~~~~m~d--------PV~--~~cGhtf~r~~I~~~l~--------------------------------~~~~ 50 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD--------PVR--LPSGTVMDRSIILRHLL--------------------------------NSPT 50 (85)
T ss_dssp TTTBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH--------------------------------HCSB
T ss_pred hheECcccCchhcC--------CeE--CCCCCEECHHHHHHHHh--------------------------------cCCC
Confidence 35789999999975 655 78999999999999986 2468
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 51 cP~~~~~l~~~~l 63 (85)
T 2kr4_A 51 DPFNRQMLTESML 63 (85)
T ss_dssp CTTTCCBCCGGGC
T ss_pred CCCCcCCCChHhc
Confidence 9999999976544
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.9e-09 Score=87.71 Aligned_cols=50 Identities=34% Similarity=0.569 Sum_probs=40.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.+ |.. ++|+|.||..||.+|+. .....||
T Consensus 24 ~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP 62 (116)
T 1rmd_A 24 ISCQICEHILAD--------PVE--TSCKHLFCRICILRCLK-------------------------------VMGSYCP 62 (116)
T ss_dssp TBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HTCSBCT
T ss_pred CCCCCCCcHhcC--------cEE--cCCCCcccHHHHHHHHh-------------------------------HCcCcCC
Confidence 589999999864 433 79999999999999986 1235799
Q ss_pred CCCcccCccch
Q 018975 199 VCRKVFHVKDL 209 (348)
Q Consensus 199 vCR~~~~~~d~ 209 (348)
+||.++...++
T Consensus 63 ~Cr~~~~~~~~ 73 (116)
T 1rmd_A 63 SCRYPCFPTDL 73 (116)
T ss_dssp TTCCBCCGGGC
T ss_pred CCCCCCCHhhc
Confidence 99999976553
No 52
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3e-09 Score=76.87 Aligned_cols=35 Identities=31% Similarity=0.666 Sum_probs=29.1
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
.....|+||++.|.+ |.+ ++|+|.||..||.+|++
T Consensus 18 ~~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 18 QEEVICPICLDILQK--------PVT--IDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCBCTTTCSBCSS--------CEE--CTTSSEECHHHHHHHHH
T ss_pred ccCCCCCcCCchhCC--------eEE--eCCCCcchHHHHHHHHH
Confidence 345789999999864 433 79999999999999986
No 53
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3.6e-09 Score=74.87 Aligned_cols=35 Identities=37% Similarity=1.014 Sum_probs=28.6
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
.....|+||++.|.+ |. .++|+|.||..||.+|+.
T Consensus 13 ~~~~~C~IC~~~~~~--------p~--~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE--------PV--IIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCCCBCSSSCCBCSS--------CC--CCSSCCCCCHHHHHHHTT
T ss_pred ccCCCCccCCcccCc--------cE--eCCCCCccCHHHHHHHHH
Confidence 345789999999864 33 379999999999999964
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.77 E-value=1.5e-09 Score=86.54 Aligned_cols=51 Identities=20% Similarity=0.125 Sum_probs=42.2
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....||||+..|.+ |.+ ++|+|.|+..||.+||. ...+
T Consensus 28 ~~~~CpI~~~~m~d--------PV~--~~cGhtf~r~~I~~~l~--------------------------------~~~~ 65 (100)
T 2kre_A 28 DEFRDPLMDTLMTD--------PVR--LPSGTIMDRSIILRHLL--------------------------------NSPT 65 (100)
T ss_dssp TTTBCTTTCSBCSS--------EEE--ETTTEEEEHHHHHHHTT--------------------------------SCSB
T ss_pred HhhCCcCccCcccC--------CeE--CCCCCEEchHHHHHHHH--------------------------------cCCC
Confidence 35789999999975 655 78999999999999974 3468
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 66 cP~~~~~l~~~~L 78 (100)
T 2kre_A 66 DPFNRQTLTESML 78 (100)
T ss_dssp CSSSCCBCCTTSS
T ss_pred CCCCCCCCChhhc
Confidence 9999999976544
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=6.8e-10 Score=91.56 Aligned_cols=60 Identities=28% Similarity=0.553 Sum_probs=43.8
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....|+||+..|........ ....++|+|.||..||.+|+. ...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~---~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~ 114 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGR---LIVSTECGHVFCSQCLRDSLK--------------------------------NAN 114 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTC---CEEEETTSBEEEHHHHHHHHH--------------------------------HCS
T ss_pred CCCCCCCCCCCccccccccCc---ceEeCCCCChhhHHHHHHHHH--------------------------------cCC
Confidence 345789999998865211110 112479999999999999986 345
Q ss_pred CCCCCCcccCccchH
Q 018975 196 TCPVCRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPvCR~~~~~~d~~ 210 (348)
.||+||..+..+++.
T Consensus 115 ~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 115 TCPTCRKKINHKRYH 129 (133)
T ss_dssp BCTTTCCBCCGGGEE
T ss_pred CCCCCCCcCChhcce
Confidence 899999999887653
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.76 E-value=2.4e-09 Score=87.44 Aligned_cols=51 Identities=25% Similarity=0.580 Sum_probs=40.4
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |.. ++|+|.||..||..|+. .....
T Consensus 17 ~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~ 55 (118)
T 3hct_A 17 SKYECPICLMALRE--------AVQ--TPCGHRFCKACIIKSIR-------------------------------DAGHK 55 (118)
T ss_dssp GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HHCSB
T ss_pred CCCCCCcCChhhcC--------eEE--CCcCChhhHHHHHHHHh-------------------------------hCCCC
Confidence 34689999999864 433 79999999999999986 12237
Q ss_pred CCCCCcccCccc
Q 018975 197 CPVCRKVFHVKD 208 (348)
Q Consensus 197 CPvCR~~~~~~d 208 (348)
||+||.++...+
T Consensus 56 CP~Cr~~~~~~~ 67 (118)
T 3hct_A 56 CPVDNEILLENQ 67 (118)
T ss_dssp CTTTCCBCCGGG
T ss_pred CCCCCCCcCHHh
Confidence 999999997654
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.76 E-value=2.2e-09 Score=85.21 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCC-CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
....||||+..|.+ |.+ ++|+ |.|+..||.+||. ...
T Consensus 21 ~~~~CpI~~~~m~d--------PV~--~~cG~htf~r~cI~~~l~--------------------------------~~~ 58 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD--------PVV--LPSSRVTVDRSTIARHLL--------------------------------SDQ 58 (98)
T ss_dssp TTTBCTTTCSBCSS--------EEE--CTTTCCEEEHHHHHHHTT--------------------------------TSC
T ss_pred HhcCCcCccccccC--------CeE--CCCCCeEECHHHHHHHHH--------------------------------hCC
Confidence 35789999999975 655 7999 9999999999975 246
Q ss_pred CCCCCCcccCccch
Q 018975 196 TCPVCRKVFHVKDL 209 (348)
Q Consensus 196 ~CPvCR~~~~~~d~ 209 (348)
.||+||.++...++
T Consensus 59 ~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 59 TDPFNRSPLTMDQI 72 (98)
T ss_dssp BCTTTCSBCCTTTS
T ss_pred CCCCCCCCCChhhc
Confidence 89999999976543
No 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.74 E-value=1.2e-09 Score=88.81 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=38.3
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP 198 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP 198 (348)
..|+||+..|.. |.+ ++|+|.||..||.+|+. .....||
T Consensus 16 ~~C~iC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP 54 (115)
T 3l11_A 16 CQCGICMEILVE--------PVT--LPCNHTLCKPCFQSTVE-------------------------------KASLCCP 54 (115)
T ss_dssp HBCTTTCSBCSS--------CEE--CTTSCEECHHHHCCCCC-------------------------------TTTSBCT
T ss_pred CCCccCCcccCc--------eeE--cCCCCHHhHHHHHHHHh-------------------------------HCcCCCC
Confidence 579999999864 443 79999999999999963 2346899
Q ss_pred CCCcccCc
Q 018975 199 VCRKVFHV 206 (348)
Q Consensus 199 vCR~~~~~ 206 (348)
+||..+..
T Consensus 55 ~Cr~~~~~ 62 (115)
T 3l11_A 55 FCRRRVSS 62 (115)
T ss_dssp TTCCBCHH
T ss_pred CCCcccCc
Confidence 99999965
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=2.1e-09 Score=87.66 Aligned_cols=48 Identities=31% Similarity=0.619 Sum_probs=38.7
Q ss_pred CCCCCccccccccCCCCccccCccccc-CCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...|+||+..|.. |.+ + +|+|.||..||.+|+. ..
T Consensus 22 ~~~C~IC~~~~~~--------pv~--~~~CgH~fC~~Ci~~~~~----------------------------------~~ 57 (117)
T 1jm7_B 22 LLRCSRCTNILRE--------PVC--LGGCEHIFCSNCVSDCIG----------------------------------TG 57 (117)
T ss_dssp TTSCSSSCSCCSS--------CBC--CCSSSCCBCTTTGGGGTT----------------------------------TB
T ss_pred CCCCCCCChHhhC--------ccE--eCCCCCHHHHHHHHHHhc----------------------------------CC
Confidence 3699999999864 444 5 9999999999999952 56
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 58 CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 58 CPVCYTPAWIQDL 70 (117)
T ss_dssp CSSSCCBCSCSSC
T ss_pred CcCCCCcCccccc
Confidence 9999999865543
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.66 E-value=9.1e-09 Score=100.20 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=44.1
Q ss_pred HHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccC
Q 018975 108 VAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDML 187 (348)
Q Consensus 108 kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (348)
.+...++......|+||+..+.. | ..++|+|.||..||..|+.
T Consensus 322 ~~~~~e~~~~~~~C~ICle~~~~--------p--v~lpCGH~FC~~Ci~~wl~--------------------------- 364 (389)
T 2y1n_A 322 YELYCEMGSTFQLCKICAENDKD--------V--KIEPCGHLMCTSCLTSWQE--------------------------- 364 (389)
T ss_dssp HHHHHHTTTSSSBCTTTSSSBCC--------E--EEETTCCEECHHHHHHHHH---------------------------
T ss_pred HHHHHhhcCCCCCCCccCcCCCC--------e--EEeCCCChhhHHHHHHHHh---------------------------
Confidence 33333444445799999998843 2 2489999999999999975
Q ss_pred CCCCCCCCCCCCCCcccCccc
Q 018975 188 GPIDGNMGTCPVCRKVFHVKD 208 (348)
Q Consensus 188 ~~~~~~~~~CPvCR~~~~~~d 208 (348)
.....||+||.++...+
T Consensus 365 ----~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 365 ----SEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp ----HTCSBCTTTCCBCCEEE
T ss_pred ----cCCCCCCCCCCccCCce
Confidence 13467999999997653
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=6.1e-09 Score=96.44 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=41.7
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....||||+..|.+ |.+ ++|+|.||..||.+||. ....+
T Consensus 207 ~~~~c~i~~~~~~d--------Pv~--~~~gh~f~~~~i~~~~~-------------------------------~~~~~ 245 (281)
T 2c2l_A 207 DYLCGKISFELMRE--------PCI--TPSGITYDRKDIEEHLQ-------------------------------RVGHF 245 (281)
T ss_dssp STTBCTTTCSBCSS--------EEE--CSSCCEEETTHHHHHHH-------------------------------HTCSS
T ss_pred cccCCcCcCCHhcC--------CeE--CCCCCEECHHHHHHHHH-------------------------------HCCCC
Confidence 45789999999975 655 89999999999999986 12234
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 246 cP~~~~~~~~~~l 258 (281)
T 2c2l_A 246 NPVTRSPLTQEQL 258 (281)
T ss_dssp CTTTCCCCCGGGC
T ss_pred CcCCCCCCchhcC
Confidence 9999999976543
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=6.9e-09 Score=73.56 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=25.6
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
....|+||+..|.. |. .++|+|.||..||..|
T Consensus 5 ~~~~C~IC~~~~~~--------p~--~l~CgH~fC~~Ci~~~ 36 (56)
T 1bor_A 5 QFLRCQQCQAEAKC--------PK--LLPCLHTLCSGCLEAS 36 (56)
T ss_dssp CCSSCSSSCSSCBC--------CS--CSTTSCCSBTTTCSSS
T ss_pred cCCCceEeCCccCC--------eE--EcCCCCcccHHHHccC
Confidence 45789999999864 42 3899999999998653
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.58 E-value=5.1e-09 Score=88.49 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=28.5
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~ 160 (348)
....|+||+..|.+ |+. ++|+|.||..||.+||.
T Consensus 30 ~~~~C~IC~~~~~~--------pv~--~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLRR--------PFQ--AQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhcC--------cEE--CCCCCccCHHHHHHHHh
Confidence 34689999999864 433 79999999999999974
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=2.7e-08 Score=87.27 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=41.7
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....||||+..|.+ |++ ++|+|.|+..||.+||. ....+
T Consensus 105 ~~f~CPI~~elm~D--------PV~--~~~Ghtfer~~I~~~l~-------------------------------~~~~t 143 (179)
T 2f42_A 105 DYLCGKISFELMRE--------PCI--TPSGITYDRKDIEEHLQ-------------------------------RVGHF 143 (179)
T ss_dssp GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HTCSB
T ss_pred HhhcccCccccCCC--------CeE--CCCCCEECHHHHHHHHH-------------------------------hCCCC
Confidence 45689999999975 655 79999999999999986 11126
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 144 cP~t~~~l~~~~L 156 (179)
T 2f42_A 144 DPVTRSPLTQDQL 156 (179)
T ss_dssp CTTTCCBCCGGGC
T ss_pred CCCCcCCCChhhC
Confidence 9999999976554
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=4.7e-08 Score=76.69 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=28.9
Q ss_pred CCCCCCccccccccCCCCccccCccccc-CCCCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~~w~~ 160 (348)
....||||+..|.+ |++ + .|+|.|+..||.+||.
T Consensus 6 ~~~~CPI~~~~~~d--------PV~--~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 6 SGFTCPITKEEMKK--------PVK--NKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SCCBCTTTCSBCSS--------EEE--ESSSCCEEEHHHHHHHHH
T ss_pred cEeECcCcCchhcC--------CEE--cCCCCCeecHHHHHHHHH
Confidence 45789999999974 555 6 4999999999999987
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=4.4e-08 Score=76.67 Aligned_cols=62 Identities=21% Similarity=0.445 Sum_probs=43.1
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
..+|+||++.|...+ +..+++|+|.||..||..||...-... ......|
T Consensus 5 ~~~C~IC~~~~~~~~-------~~~l~~CgH~FC~~Cl~~~~~~~i~~g------------------------~~~~i~C 53 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-------MTTIAQCQCIFCTLCLKQYVELLIKEG------------------------LETAISC 53 (94)
T ss_dssp BCCCSSSCCCCBGGG-------EEEETTTTEEEEHHHHHHHHHHHHHHC------------------------SCCCEEC
T ss_pred CcCCcccCccccccc-------ceEcCCCCCcccHHHHHHHHHHHhhcC------------------------CcccccC
Confidence 568999999886432 223347999999999999997321110 0134689
Q ss_pred CC--CCcc--cCccchH
Q 018975 198 PV--CRKV--FHVKDLE 210 (348)
Q Consensus 198 Pv--CR~~--~~~~d~~ 210 (348)
|. ||.. ++..++.
T Consensus 54 P~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 54 PDAACPKQGHLQENEIE 70 (94)
T ss_dssp SCTTCSSCCEECHHHHH
T ss_pred ccccCCCCCccCHHHHH
Confidence 99 9999 8776554
No 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.46 E-value=5.2e-08 Score=84.36 Aligned_cols=52 Identities=27% Similarity=0.595 Sum_probs=41.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
....|+||+..|.. |+. ++|+|.||..||.+|+. .....
T Consensus 17 ~~~~C~IC~~~~~~--------pv~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~ 55 (170)
T 3hcs_A 17 SKYECPICLMALRE--------AVQ--TPCGHRFCKACIIKSIR-------------------------------DAGHK 55 (170)
T ss_dssp GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HHCSB
T ss_pred CCCCCCCCChhhcC--------cEE--CCCCCHHHHHHHHHHHH-------------------------------hCCCC
Confidence 34689999999864 443 79999999999999986 12247
Q ss_pred CCCCCcccCccch
Q 018975 197 CPVCRKVFHVKDL 209 (348)
Q Consensus 197 CPvCR~~~~~~d~ 209 (348)
||+||.++...++
T Consensus 56 CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 56 CPVDNEILLENQL 68 (170)
T ss_dssp CTTTCCBCCGGGC
T ss_pred CCCCccCcchhhh
Confidence 9999999977543
No 68
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.45 E-value=4.8e-08 Score=70.94 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=37.1
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...|+||++.+.+ +.+..++|+|. |+..|+.+|++ ....
T Consensus 7 ~~~C~IC~~~~~~--------~~~~~~pCgH~~~C~~C~~~~~~--------------------------------~~~~ 46 (63)
T 2vje_B 7 LKPCSLCEKRPRD--------GNIIHGRTGHLVTCFHCARRLKK--------------------------------AGAS 46 (63)
T ss_dssp GSBCTTTSSSBSC--------EEEEETTEEEEEECHHHHHHHHH--------------------------------TTCB
T ss_pred CCCCcccCCcCCC--------eEEEecCCCCHhHHHHHHHHHHH--------------------------------hCCc
Confidence 4689999987643 11112499998 99999999975 2367
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||.+|..
T Consensus 47 CPiCR~~i~~ 56 (63)
T 2vje_B 47 CPICKKEIQL 56 (63)
T ss_dssp CTTTCCBCCE
T ss_pred CCCcCchhhc
Confidence 9999999853
No 69
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.43 E-value=7.1e-08 Score=70.28 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
...|+||++.+.+ +....++|+|. |+..|+.+|++ ....
T Consensus 8 ~~~C~IC~~~~~~--------~~~~~~pCgH~~~C~~C~~~~~~--------------------------------~~~~ 47 (64)
T 2vje_A 8 IEPCVICQGRPKN--------GCIVHGKTGHLMACFTCAKKLKK--------------------------------RNKP 47 (64)
T ss_dssp GSCCTTTSSSCSC--------EEEEETTEEEEEECHHHHHHHHH--------------------------------TTCC
T ss_pred cCCCCcCCCCCCC--------EEEECCCCCChhhHHHHHHHHHH--------------------------------cCCc
Confidence 4689999998753 11101399999 89999999975 3357
Q ss_pred CCCCCcccCc
Q 018975 197 CPVCRKVFHV 206 (348)
Q Consensus 197 CPvCR~~~~~ 206 (348)
||+||.+|..
T Consensus 48 CPiCR~~i~~ 57 (64)
T 2vje_A 48 CPVCRQPIQM 57 (64)
T ss_dssp CTTTCCCCCE
T ss_pred CCCcCcchhc
Confidence 9999999853
No 70
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.39 E-value=7.9e-08 Score=71.97 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=24.6
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRW 158 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w 158 (348)
..|+||++.+.+ |. .++|+|. ||..|+.+|
T Consensus 25 ~~C~iC~~~~~~--------~~--~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNIA--------IV--FVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBCC--------EE--EETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCC--------EE--EcCCCChhHHHHhhhcC
Confidence 589999998754 22 3799999 999998776
No 71
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.5e-07 Score=69.27 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVR 157 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~ 157 (348)
..|+||+..+.+ |. +++|+|. ||..|+.+
T Consensus 26 ~~C~IC~~~~~~--------~~--~~pCgH~~~C~~C~~~ 55 (75)
T 2ecg_A 26 KLCKICMDRNIA--------IV--FVPCGHLVTCKQCAEA 55 (75)
T ss_dssp HSCSSSCSSCCC--------BC--CSSSCCCCBCHHHHHH
T ss_pred CCCCcCCCCCCC--------EE--EecCCCHHHHHHHhhC
Confidence 489999998753 22 3799999 99999853
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.1e-07 Score=87.55 Aligned_cols=56 Identities=23% Similarity=0.554 Sum_probs=43.3
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.....||||+..|.+ |.+ .+.|+|.|+..||.+||. . ....
T Consensus 179 ~~el~CPIcl~~f~D--------PVt-s~~CGHsFcR~cI~~~~~---~---------------------------~~~~ 219 (267)
T 3htk_C 179 KIELTCPITCKPYEA--------PLI-SRKCNHVFDRDGIQNYLQ---G---------------------------YTTR 219 (267)
T ss_dssp BCCSBCTTTSSBCSS--------EEE-ESSSCCEEEHHHHHHHST---T---------------------------CSCE
T ss_pred ceeeECcCccCcccC--------Cee-eCCCCCcccHHHHHHHHH---h---------------------------CCCC
Confidence 345689999999965 654 259999999999999974 1 1345
Q ss_pred CCCC--CCcccCccchH
Q 018975 196 TCPV--CRKVFHVKDLE 210 (348)
Q Consensus 196 ~CPv--CR~~~~~~d~~ 210 (348)
.||+ ||+.+...|+.
T Consensus 220 ~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 220 DCPQAACSQVVSMRDFV 236 (267)
T ss_dssp ECSGGGCSCEECGGGEE
T ss_pred CCCcccccCcCchhhCC
Confidence 7999 99999776543
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.23 E-value=1e-06 Score=63.32 Aligned_cols=49 Identities=20% Similarity=0.494 Sum_probs=35.3
Q ss_pred CCCCCccccccccCCCCccccCcccccCCC--C---cccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCF--H---CFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG 192 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~--H---~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (348)
...|.||+... ++ +++ ++|. | +||..||.+|++..
T Consensus 6 ~~~CrIC~~~~--~~------~l~--~PC~C~gs~~~~H~~Cl~~W~~~~------------------------------ 45 (60)
T 1vyx_A 6 VPVCWICNEEL--GN------ERF--RACGCTGELENVHRSCLSTWLTIS------------------------------ 45 (60)
T ss_dssp CCEETTTTEEC--SC------CCC--CSCCCSSGGGSCCHHHHHHHHHHH------------------------------
T ss_pred CCEeEEeecCC--CC------cee--cCcCCCCchhhhHHHHHHHHHHhC------------------------------
Confidence 46899999862 11 232 5754 5 99999999998722
Q ss_pred CCCCCCCCCcccCc
Q 018975 193 NMGTCPVCRKVFHV 206 (348)
Q Consensus 193 ~~~~CPvCR~~~~~ 206 (348)
....||+||..+..
T Consensus 46 ~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 46 RNTACQICGVVYNT 59 (60)
T ss_dssp TCSBCTTTCCBCCC
T ss_pred CCCccCCCCCeeec
Confidence 23689999998853
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.14 E-value=7.4e-07 Score=64.30 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCCCccccccccCCCCccccCccccc-CCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
..||||+..+.+ |.+ + .|+|.|...||.+|+. ..+.|
T Consensus 4 ~~CpIs~~~m~d--------PV~--~~~sG~~yer~~I~~~l~--------------------------------~~~~c 41 (61)
T 2bay_A 4 MLCAISGKVPRR--------PVL--SPKSRTIFEKSLLEQYVK--------------------------------DTGND 41 (61)
T ss_dssp CCCTTTCSCCSS--------EEE--ETTTTEEEEHHHHHHHHH--------------------------------HHSBC
T ss_pred EEecCCCCCCCC--------CEE--eCCCCcEEcHHHHHHHHH--------------------------------hCCCC
Confidence 679999999974 544 5 8999999999999986 23469
Q ss_pred CCCCcccCccchH
Q 018975 198 PVCRKVFHVKDLE 210 (348)
Q Consensus 198 PvCR~~~~~~d~~ 210 (348)
|++++++..+|+.
T Consensus 42 P~t~~~L~~~~Li 54 (61)
T 2bay_A 42 PITNEPLSIEEIV 54 (61)
T ss_dssp TTTCCBCCGGGCE
T ss_pred cCCcCCCChhhcE
Confidence 9999999887653
No 75
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.07 E-value=9.4e-07 Score=67.03 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRW 158 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w 158 (348)
..|+||+..+.+ + .+++|+|. |+..|+.+|
T Consensus 19 ~~C~IC~~~~~~--------~--v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 19 MLCMVCCEEEIN--------S--TFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp TBCTTTSSSBCC--------E--EEETTCBCCBCHHHHTTC
T ss_pred CEeEEeCcccCc--------E--EEECCCCHHHHHHHHHhc
Confidence 489999988753 2 24799999 999999766
No 76
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2.3e-06 Score=62.95 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=24.5
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~ 157 (348)
....|+||++.+.+ +.+++|+|. |+..|+.+
T Consensus 14 ~~~~C~IC~~~~~~----------~v~~pCgH~~~C~~C~~~ 45 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN----------WVLLPCRHTCLCDGCVKY 45 (68)
T ss_dssp CSSCCSSSSSSCCC----------CEETTTTBCCSCTTHHHH
T ss_pred CCCCCCCcCcCCCC----------EEEECCCChhhhHHHHhc
Confidence 45789999987643 235899999 99999864
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.00 E-value=3.8e-06 Score=65.97 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=38.5
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCC
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPV 199 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPv 199 (348)
-|++|-.+|.. ..+..+|+|.|+..|+..|.. .....||+
T Consensus 3 fC~~C~~Pi~i---------ygRmIPCkHvFCydCa~~~~~-------------------------------~~~k~Cp~ 42 (101)
T 3vk6_A 3 FCDKCGLPIKV---------YGRMIPCKHVFCYDCAILHEK-------------------------------KGDKMCPG 42 (101)
T ss_dssp BCTTTCSBCSE---------EEEEETTCCEEEHHHHHHHHH-------------------------------TTCCBCTT
T ss_pred ecCccCCCeEE---------EeeeccccccHHHHHHHHHHh-------------------------------ccCCCCcC
Confidence 48999999865 446689999999999999964 24578999
Q ss_pred CCcccCc
Q 018975 200 CRKVFHV 206 (348)
Q Consensus 200 CR~~~~~ 206 (348)
||.+|..
T Consensus 43 C~~~V~r 49 (101)
T 3vk6_A 43 CSDPVQR 49 (101)
T ss_dssp TCCBCSE
T ss_pred cCCeeee
Confidence 9999854
No 78
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.88 E-value=2.2e-06 Score=82.52 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=25.3
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRW 158 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w 158 (348)
...|+||++.+.. |. .++|+|. ||..|+.+|
T Consensus 295 ~~~C~IC~~~~~~--------~v--~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEVS--------VV--FIPCGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBCC--------EE--EETTCCEEECTTTGGGC
T ss_pred CCCCCccCCcCCc--------eE--EcCCCChhHhHHHHhcC
Confidence 4689999999864 32 3799999 999999776
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.69 E-value=3.2e-05 Score=70.72 Aligned_cols=93 Identities=12% Similarity=0.270 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHhc-CC-----chhhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccC
Q 018975 73 KGLDDQRQKHLISCIQD-KAHELT-SC-----LMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMS 145 (348)
Q Consensus 73 ~GL~~~~i~~L~~~L~~-~~ee~~-G~-----~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~ 145 (348)
++|+..+.+.+++.+.+ .|-... |. -.+.++..+..+.+.+ ....|.||..-+..+- ++..
T Consensus 131 k~l~~~eae~lL~~lv~~gWl~~~~g~~~l~~R~l~El~~~l~~~~~~---~i~~C~iC~~iv~~g~---------~C~~ 198 (238)
T 3nw0_A 131 KKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPD---AVKICNICHSLLIQGQ---------SCET 198 (238)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHCTT---TCCBCTTTCSBCSSCE---------ECSS
T ss_pred CCCCHHHHHHHHHHHHHhcchhhhCCEEEecCccHHHHHHHHHHhcCC---CCCcCcchhhHHhCCc---------ccCc
Confidence 56777766666664443 222211 21 1234444445544432 3578999999887531 3456
Q ss_pred CCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCcc
Q 018975 146 CFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207 (348)
Q Consensus 146 C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~ 207 (348)
|.|.||.+|+.+|++ . .....||.|+..++..
T Consensus 199 C~~~~H~~C~~~~~~---~---------------------------~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 199 CGIRMHLPCVAKYFQ---S---------------------------NAEPRCPHCNDYWPHE 230 (238)
T ss_dssp SCCEECHHHHHHHTT---T---------------------------CSSCBCTTTCCBCCSC
T ss_pred cChHHHHHHHHHHHH---h---------------------------CCCCCCCCCCCCCCCC
Confidence 999999999999974 1 1345899999988664
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.55 E-value=0.01 Score=45.83 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=35.5
Q ss_pred CCCCCCccccccccCCCCccccCcccccCC-CCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSC-FHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C-~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
.-..|-.|...+.. +..| .||+|..||...+. ...
T Consensus 27 G~~nCKsCWf~~k~------------LV~C~dHYLCl~CLtlmL~--------------------------------~Sd 62 (99)
T 2ko5_A 27 GPQFCKSCWFENKG------------LVECNNHYLCLNCLTLLLS--------------------------------VSN 62 (99)
T ss_dssp CCCCCCSSCSCCSS------------EEECSSCEEEHHHHHHTCS--------------------------------SSS
T ss_pred CcccChhhccccCC------------eeeecchhhHHHHHHHHHh--------------------------------hcc
Confidence 34578889866532 3566 79999999988652 456
Q ss_pred CCCCCCcccCcc
Q 018975 196 TCPVCRKVFHVK 207 (348)
Q Consensus 196 ~CPvCR~~~~~~ 207 (348)
.||+|.++++.+
T Consensus 63 rCpIC~~pLPtk 74 (99)
T 2ko5_A 63 RCPICKMPLPTK 74 (99)
T ss_dssp EETTTTEECCCC
T ss_pred CCcccCCcCCcc
Confidence 899999999875
No 81
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=94.52 E-value=0.099 Score=43.75 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCceecc--C-CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 1 MAEEEVAMELEAVQAVYGDECVVLD--S-YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 1 m~~Ee~~~ElEAL~sIY~dd~~v~~--~-~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
|+.-.+..|+..|+.--+..+.+.. + .-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 1 ~~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (149)
T 1fxt_A 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGT---PYEGGKFVVDIEVPMEYPFKPPKMQFDTK 73 (149)
T ss_dssp CCHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSS---TTCSSEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCC---CcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 6777889999999764434444332 1 2235666665 3211 11123588999999999999999988653
No 82
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=94.34 E-value=0.13 Score=42.45 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCCceec--cC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVL--DS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~--~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.=-+..+.+. .. .-..+.+.|....+ ..=..-.+.+.|.+|++||..||.|.+...
T Consensus 25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~--TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 95 (136)
T 2a7l_A 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPG--TLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95 (136)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTT--STTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCC--CccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence 468889999976444444321 11 12245555553211 111223588999999999999999988664
No 83
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=94.19 E-value=0.11 Score=44.45 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.-.+..|+..|+.--+..+.+.. +....+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 23 ~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~ 92 (166)
T 2ayv_A 23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDS---PYSGGVFFLNIHFPSDYPFKPPKVNFTTK 92 (166)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCC---CcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence 45688899999875444444432 22345666666 3221 11123588999999999999999988764
No 84
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=94.14 E-value=0.085 Score=44.21 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 2 AEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
+.-.+..|+..|+.--+..+.+..... ..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPES---PYQGGVFFLTIHFPTDYPFKPPKVAFTTR 75 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCC---CcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence 345788899999875444444332112 24455555 3221 11223588999999999999999988654
No 85
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=93.86 E-value=0.16 Score=42.83 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.-.+..|+..|+.-=+..+.+..... ..+.+.|. |.. ..=..-.+.+.|.||++||..||.|.+...
T Consensus 7 ~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~---tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (155)
T 1jat_A 7 PKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQ---SPYEDGIFELELYLPDDYPMEAPKVRFLTK 76 (155)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTT---STTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCC---CCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence 35688899999864344444332112 24445554 321 111234689999999999999999988764
No 86
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=93.76 E-value=0.19 Score=42.13 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--++.+.+..... ..+.+.|.... +..=..-.+.+.|.+|++||..||.|.+...
T Consensus 7 ~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~--~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPD--DTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCT--TSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCC--CCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence 4688899999865444444332211 23444444211 1111123588999999999999999998753
No 87
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=93.73 E-value=0.23 Score=41.74 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcee-cc--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 2 AEEEVAMELEAVQAVYGDECVV-LD--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sIY~dd~~v-~~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
+.-.+..|+..|+.--+..+.+ .. +.-..+.+.|.|... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQP---PYHLKAFNLRISFPPEYPFKPPMIKFTTK 75 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCST---TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCC---CCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence 4557889999998655555554 21 222456666654322 11234689999999999999999998764
No 88
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=93.61 E-value=0.17 Score=42.70 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--++.+.+... .-..+.+.|....+ ..=..-.+.+.|.||++||..||.|.+...
T Consensus 16 ~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~--tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 84 (158)
T 1zdn_A 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEG--TPYAGGLFRMKLLLGKDFPASPPKGYFLTK 84 (158)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCC--CCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence 46788999998654444544322 22355666652211 111123588999999999999999988764
No 89
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=93.51 E-value=0.19 Score=42.40 Aligned_cols=66 Identities=11% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+.. +.-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 12 ~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (156)
T 2e2c_A 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDT---VYESLKYKLTLEFPSDYPYKPPVVKFTTP 80 (156)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCC---CcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4688899999864334444432 22235566665 3221 11223588999999999999999998764
No 90
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=93.43 E-value=0.14 Score=42.87 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 2 AEEEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
+.-.+..|+..|+.-=+..+.+.. +.-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDS---PYQGGLFFLDVHFPVDYPFKAPRVTFMTK 75 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCC---CcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence 345688899999864444443332 22245666666 3221 11223588999999999999999988764
No 91
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=93.37 E-value=0.14 Score=43.74 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.-.+..|+..|+.--+..+.+.. +....+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 21 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~T---pYegg~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDS---PYQGGVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp HHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCC---CccCceEEEEEECCCcCCCCCCEEEEecC
Confidence 35688899999764334444332 22345666666 3221 11123588999999999999999988754
No 92
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=93.35 E-value=0.22 Score=42.61 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+..... ..+.+.|. |. +-- ..-.+.|.|.||++||..||.|.+...
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpY----egG~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPY----EDGTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTT----TTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCc----CCCEEEEEEECcccCCCCCCccccccC
Confidence 4678899999865555554432211 23444444 22 211 223588999999999999999998764
No 93
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=93.08 E-value=0.23 Score=41.49 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-=+..+.+..... ..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 4 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 72 (149)
T 2r0j_A 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGT---PYEGGTYKLELFLPEQYPMEPPKVRFLTK 72 (149)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCC---CcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence 4678899998764333343332111 23445554 3211 11223588999999999999999998764
No 94
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=93.04 E-value=0.33 Score=40.95 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHh---hcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQA---VYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~s---IY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+. .-...+.+.. +.-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 11 ~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 82 (159)
T 2bep_A 11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT---PYEGGRYQLEIKIPETYPFNPPKVRFITK 82 (159)
T ss_dssp HHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCC---CccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence 468889999876 2233343332 22235666665 3211 11123588999999999999999998754
No 95
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=93.01 E-value=0.25 Score=40.01 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-=+..+.+.. +.-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~t---pYegg~f~~~i~fp~~YP~~PP~v~f~t~ 77 (125)
T 2fo3_A 9 YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENT---IYANEVYKLKIIFPDDYPLKPPIVYFLQK 77 (125)
T ss_dssp CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCC---CcCCCEEEEEEEcCCCCCCCCCEEEEeCC
Confidence 4678899998754333343322 22235556665 3211 11223588999999999999999988754
No 96
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=92.77 E-value=0.28 Score=41.22 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-=+..+.+.. +.-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDS---PFEGGTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCC---CcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence 4678899999764444444332 22245666665 3221 11123588999999999999999988754
No 97
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=92.72 E-value=0.28 Score=40.36 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.=-+..+.+.. +.-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 23 ~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~t---pYegg~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 23 YRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENT---IYANEVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred HHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCC---ceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 4678899988753333343322 22245666665 3211 11223588999999999999999988754
No 98
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=92.61 E-value=0.29 Score=41.83 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+... .-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~t---pYegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (169)
T 1yh2_A 7 SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANT---PYEKGVFKLEVIIPERYPFEPPQIRFLTP 75 (169)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCC---CccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence 35788999997654444444322 2235555554 2211 11123588999999999999999998764
No 99
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=92.47 E-value=0.3 Score=42.83 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+.. +.-..+.+.|....+ ..=..-.+.|.|.||++||..||.|.+...
T Consensus 51 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~--TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 119 (194)
T 3bzh_A 51 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPG--SVYEGGVFFLDITFTPEYPFKPPKVTFRTR 119 (194)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCC--CCccCCEEEEEEECCCcCCCCCccccccCC
Confidence 4678899998864333343332 222355555552211 111123588999999999999999998754
No 100
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=92.22 E-value=0.26 Score=41.81 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhcCCCceecc--C-CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVLD--S-YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~~--~-~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.-.+..|+..|+.--+..+.+.. . .-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 5 ~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (164)
T 3h8k_A 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDT---CFEFGVFPAILSFPLDYPLSPPKMRFTCE 75 (164)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCC---CCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence 34678899988865444444432 1 2235666665 3221 11223578999999999999999998765
No 101
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=92.18 E-value=0.31 Score=42.13 Aligned_cols=66 Identities=9% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-=+..+.+..... ..+.+.|. |... .=..-.+.|.|.||++||..||.|.+...
T Consensus 33 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~ 101 (179)
T 1i7k_A 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGT---VYEDLRYKLSLEFPSGYPYNAPTVKFLTP 101 (179)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTS---TTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCC---CcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence 4678899988764333343332111 23444454 2211 11123589999999999999999998765
No 102
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=92.17 E-value=0.38 Score=41.18 Aligned_cols=66 Identities=11% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+.. +.-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 26 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 26 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNS---VWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTS---TTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCC---CccceEEEEEEECCccCCCCCCcceecCC
Confidence 3578899998765444444432 22245666665 3221 11123588999999999999999988764
No 103
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=92.02 E-value=0.3 Score=42.51 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+..... ..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 17 ~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fP~~YP~~PP~v~f~T~ 85 (187)
T 2f4w_A 17 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMT---PYEGGYYHGKLIFPREFPFKPPSIYMITP 85 (187)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCC---CCCCCEEEEEEEcCCCCCCCCCcccccCC
Confidence 4678899999854333343322111 24445554 3221 11223588999999999999999988654
No 104
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=91.80 E-value=0.28 Score=43.70 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+.. +.-..+.+.|. |. +-. ..-.+.|.|.||++||..||.|.+...
T Consensus 26 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpY----egG~f~l~i~fP~~YP~~PP~V~F~T~ 94 (216)
T 2pwq_A 26 LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPY----EGGHFTLAITIPNDYPYNPPKIKFVTK 94 (216)
T ss_dssp HHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTT----TTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCc----cceEEEEEEECCCcCCCCCCcccccCC
Confidence 4678899988764444444332 22235666665 32 211 123588999999999999999987653
No 105
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=91.35 E-value=0.6 Score=39.95 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhcCCCceec--c-CCCCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 3 EEEVAMELEAVQAVYGDECVVL--D-SYPPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY~dd~~v~--~-~~~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.-.+..|+..|+.--+..+.+. . +.-..+.+.|. |. +-- ..-.+.+.|.||++||..||.|.+...
T Consensus 19 ~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpY----egG~f~~~i~fp~~YP~~PP~v~F~T~ 89 (172)
T 2awf_A 19 SLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLY----EGGVFKAHLTFPKDYPLRPPKMKFITE 89 (172)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTT----TTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCc----CCcEEEEEEECCcccCCCCCcccccCC
Confidence 3467789999987544445443 2 12235555554 32 211 123588999999999999999998765
No 106
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=91.34 E-value=0.54 Score=40.66 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCCCceec-cC--CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVL-DS--YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~-~~--~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+. .. .-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 10 kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 79 (183)
T 3rz3_A 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNT---YYEGGYFKARLKFPIDYPYSPPAFRFLTK 79 (183)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCC---CCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence 468889999887555555444 21 2235666665 3211 11123578999999999999999988765
No 107
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=91.14 E-value=0.42 Score=41.81 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcC-------------CCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcc
Q 018975 4 EEVAMELEAVQAVYG-------------DECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRI 67 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~-------------dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i 67 (348)
-.+..|+..|+.--+ ..+.+..... ..+.+.|. |.. ..=..-.+.|.|.||++||..||.|
T Consensus 35 ~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~---TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 35 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLG---TPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp HHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTT---STTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCC---CCcCCCEEEEEEECCCcCCCCCCeE
Confidence 367788888876322 2333322111 23445554 221 1112235889999999999999999
Q ss_pred cccCC
Q 018975 68 DLIES 72 (348)
Q Consensus 68 ~i~~~ 72 (348)
.+...
T Consensus 112 ~F~T~ 116 (193)
T 2f4z_A 112 KFVTK 116 (193)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 98764
No 108
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=90.89 E-value=0.38 Score=42.86 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhhcCCCceeccCC--C-CeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 2 AEEEVAMELEAVQAVYGDECVVLDSY--P-PHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sIY~dd~~v~~~~--~-~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
+.-.+..|+..|+.--+..+.+.... . ..+.+.|. |. +-. ..-.+.+.|.||++||..||.|.+...
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpY----egG~f~l~i~fP~~YP~~PP~V~F~T~ 74 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPY----EGGKFVVDIEVPMEYPFKPPKMQFDTK 74 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETT----EEECCEEEEECCSCSSSCCCEEEETTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCc----CCCEEEEEEeCCccCCCCCCcccccCC
Confidence 44578889999986544445443221 2 24555554 21 111 123478999999999999999988654
No 109
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=90.68 E-value=0.5 Score=40.05 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCCCceecc---CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD---SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~---~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-=+..+.+.. +.-..+.+.|....+ ..=..-.+.+.|.||++||..||.|.+...
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~--tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPD--TPYADGVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCC--CCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence 4678899999864334444432 122345555542111 111123588999999999999999998764
No 110
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=90.68 E-value=0.47 Score=40.29 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCCCceeccC-C------CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDS-Y------PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~-~------~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
..+..|+..|+.=-+..+.+... . -..+.+.|....+ ..=..-.+.|.|.||++||..||.|.+...
T Consensus 13 ~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~--Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 13 TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPK--TSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCC--CCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 46788999998655544443321 1 1234455542211 111223578999999999999999988754
No 111
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=90.56 E-value=0.78 Score=40.17 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhh---cCCCceec--cCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 2 AEEEVAMELEAVQAV---YGDECVVL--DSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sI---Y~dd~~v~--~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
+.-.+..|+..|..- -+..+.+. .+.-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT---PYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCC---CCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 356788899888642 22233333 222345666665 3221 11123488999999999999999988764
No 112
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=89.71 E-value=0.56 Score=39.87 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhc------------CCCceec--cCCCCeeEEEEecCCCCCCCCc--ceEEEEEEEcCCCCCCCCCc
Q 018975 3 EEEVAMELEAVQAVY------------GDECVVL--DSYPPHLHLRIKPRTADVSSQQ--FVEAVIGIRASPKYPEHPPR 66 (348)
Q Consensus 3 ~Ee~~~ElEAL~sIY------------~dd~~v~--~~~~~~~~i~i~p~~~~~~~~~--~v~i~L~i~lp~~YP~~~P~ 66 (348)
.-.+..|+..|..-- ...+.+. .+.-..+.+.|....+ ..=. .-.+.+.|.||++||..||.
T Consensus 10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~--tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPAD--SVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTT--SGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCC--CCccCCCCEEEEEEECCCCCCCCCCE
Confidence 356788888887654 2222222 2233456666663211 1112 24588999999999999999
Q ss_pred ccccCC
Q 018975 67 IDLIES 72 (348)
Q Consensus 67 i~i~~~ 72 (348)
|.+...
T Consensus 88 v~f~t~ 93 (167)
T 4ds2_A 88 VRFVTP 93 (167)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 988754
No 113
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=89.04 E-value=1.1 Score=37.67 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhc-CCCceecc--CC---CCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVY-GDECVVLD--SY---PPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY-~dd~~v~~--~~---~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-- +..+.+.. .. -..+.+.|. |. +.. ..-.+.|.|.||++||..||.|.+...
T Consensus 24 ~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpY----egG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 24 FRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVF----ENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp HHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTT----TTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCc----CCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 36788999988642 22333221 11 235666665 32 211 123588999999999999999988764
No 114
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=88.91 E-value=0.52 Score=39.82 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCCceeccC-------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDS-------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~-------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+... .-..+.+.|.... +..=..-.+.+.|.||++||..||.|.+...
T Consensus 10 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~--~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 10 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKK--GTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCT--TSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCC--CCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 46888999998654544443321 0113444554211 1111223578999999999999999988754
No 115
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=88.91 E-value=1 Score=38.17 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCCCceec-cC-C-CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVL-DS-Y-PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~-~~-~-~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--++.+.+. .. . -..+.+.|.|...- =..-.+.+.|.||++||..||.|.+...
T Consensus 17 ~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tp---yegg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (167)
T 3fn1_B 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY---YQGGKFQFETEVPDAYNMVPPKVKCLTK 85 (167)
T ss_dssp HHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSST---TTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCc---cCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence 357889999987555555543 11 1 23455556543221 1123478999999999999999988764
No 116
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=88.74 E-value=0.39 Score=40.29 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcCCCceecc---CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD---SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~---~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.--+..+.+.. +.-..+.+.|.|...- =..-.+.+.|.+|++||..||.|.+...
T Consensus 5 ~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tp---yegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (154)
T 1c4z_D 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPAEYPFKPPKITFKTK 73 (154)
T ss_dssp TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSS---CCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCC---ccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence 3577788887654444443222 1223555556554321 1122478999999999999999998764
No 117
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=88.70 E-value=0.66 Score=38.86 Aligned_cols=62 Identities=8% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcCCCceec--cCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 5 EVAMELEAVQAVYGDECVVL--DSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 5 e~~~ElEAL~sIY~dd~~v~--~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.+..|+..|.. +.+.+. .+.-..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 6 Rl~kEl~~l~~---~~~~v~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 70 (152)
T 2onu_A 6 RKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGT---AYEGGIWKVHVTLPDDYPFASPSIGFMNK 70 (152)
T ss_dssp HHHHTHHHHHH---HTCCEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHhcCc---CCCEEEEccCccceEEEEEECCCCC---cccceEEEEEEcCcccCCCCCCeEEEecC
Confidence 45667777653 122222 111224555554 3211 11223588999999999999999988653
No 118
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=88.59 E-value=1.3 Score=36.26 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhc-CCCceecc--CC---CCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVY-GDECVVLD--SY---PPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY-~dd~~v~~--~~---~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.-- +..+.+.. .. -..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+...
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHS---NHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSS---TTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCC---CccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 36888999987642 33333221 11 235666665 3221 11223589999999999999999987653
No 119
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=88.53 E-value=1.3 Score=37.46 Aligned_cols=64 Identities=28% Similarity=0.289 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhcCCC-ceec--cCC---CCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 5 EVAMELEAVQAVYGDE-CVVL--DSY---PPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 5 e~~~ElEAL~sIY~dd-~~v~--~~~---~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.+..|+..|+.--++. +.+. ... -..+.+.|. |. +-- ..-.+.+.|.||++||..||.|.+...
T Consensus 29 RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpY----egG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY----ENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp HHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTT----TTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCc----cCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 5788999988643333 3322 222 235666665 32 211 123588999999999999999988654
No 120
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=88.29 E-value=1 Score=38.51 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHh-h--c-----CC---Cceecc---CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCccc
Q 018975 4 EEVAMELEAVQA-V--Y-----GD---ECVVLD---SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRID 68 (348)
Q Consensus 4 Ee~~~ElEAL~s-I--Y-----~d---d~~v~~---~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~ 68 (348)
-.+..|+..|+. . - ++ -+.+.. +.-..+.+.|. |... .=..-.+.+.|.||++||..||.|.
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~ 85 (172)
T 2y9m_A 9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDT---PYENHQFRILIEVPSSYPMNPPKIS 85 (172)
T ss_dssp HHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCC---cccCCEEEEEEECCCcCCCCCCEEE
Confidence 368889999987 3 1 22 122221 22345666665 3221 1122358899999999999999999
Q ss_pred ccC
Q 018975 69 LIE 71 (348)
Q Consensus 69 i~~ 71 (348)
+..
T Consensus 86 f~t 88 (172)
T 2y9m_A 86 FMQ 88 (172)
T ss_dssp ECT
T ss_pred Eee
Confidence 876
No 121
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=88.21 E-value=0.8 Score=38.48 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCCCceeccCC-------CCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSY-------PPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~-------~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
-.+..|+..|+.-=+..+.+.... -..+.+.|. |... .=..-.+.+.|.||++||..||.|.+..
T Consensus 7 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (157)
T 2gjd_A 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGT---NWAGGVYPITVEYPNEYPSKPPKVKFPA 79 (157)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTS---TTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCC---CcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence 468889988876444443332110 113344554 2211 1122358899999999999999999875
No 122
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=87.54 E-value=0.23 Score=38.21 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=25.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
...|+||+..+... |.+..+.|.|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~-------av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQD-------AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCB-------CCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCC-------ceEECCcCChHHhHHHCHHH
Confidence 46899999764221 23345899999999999984
No 123
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=87.15 E-value=1.1 Score=40.90 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhh---cCCCceec--cCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAV---YGDECVVL--DSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sI---Y~dd~~v~--~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|..- -+..+.+. .+.-..+.+.|. |... .=..-.+.|.|.||++||..||.|.+...
T Consensus 60 ~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT---PYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp HHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCC---CcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 4678888888541 22233333 222345666665 3221 11223588999999999999999988664
No 124
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=87.03 E-value=0.92 Score=39.47 Aligned_cols=64 Identities=11% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCCCceec----c--CCCC---eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVL----D--SYPP---HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~----~--~~~~---~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+ -+..+.+. . +.-. .+.+.|.|... .=..-.+.+.|.||++||..||.|.+...
T Consensus 32 ~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 32 IRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEG---YYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp HHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSS---TTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCC---CCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 35778888887 23344442 2 1223 56666765421 11223478999999999999999988764
No 125
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=86.87 E-value=0.7 Score=39.90 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCCceecc-CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLD-SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~-~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|.. +.+.+.. +....+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 28 ~RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~t---pYegG~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 28 RRMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGT---PYEGGVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp HHHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCC---CccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence 467889988873 3333221 11245555554 2211 11123588999999999999999988763
No 126
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=86.80 E-value=1 Score=43.71 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975 2 AEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 2 ~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
+.-.+..|+..|..-=+..+.+..... ..+.+.|. |... .=..-.+.+.|.+|++||..||.|.+..
T Consensus 4 a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t 73 (399)
T 4ddg_A 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDS---PYQGGVFFLTIHFPTDYPFKPPKVAFTT 73 (399)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTS---SSTTCEEEEEEECCSSTTTSCCEEEESS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCC---CCCCCEEEEEEECCcccCCCCcEEEeec
Confidence 345688899998864444443332111 24555555 3211 1122357899999999999999986544
No 127
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=86.37 E-value=0.57 Score=40.69 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEEEEcCCCCCCCCCcccccCC
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.+.|.|.||++||..||.|.+..+
T Consensus 90 ~f~l~i~fp~~YP~~PP~V~f~tp 113 (186)
T 1zuo_A 90 YILLNFSFKDNFPFDPPFVRVVLP 113 (186)
T ss_dssp SEEEEEECCTTTTSSCCEEEEEES
T ss_pred EEEEEEECCCCCCCCCCeEEEeCC
Confidence 588999999999999999987654
No 128
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=84.52 E-value=1.2 Score=37.45 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCCCceec-cC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVL-DS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~-~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+. +..+.+. .. .-..+.+.|.|...- =..-.+.+.|.+|++||..||.|.+...
T Consensus 9 ~RL~kEl~~l~~--~~~~~~~~~~~~~l~~w~~~igp~~tp---yegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (160)
T 1y8x_A 9 LRIQKDINELNL--PKTCDISFSDPDDLLNFKLVICPDEGF---YKSGKFVFSFKVGQGYPHDPPKVKCETM 75 (160)
T ss_dssp HHHHHHHHTCCC--CTTEEEECSSTTCTTEEEEEECCSSST---TTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHhcCC--CCCeEEEeccCCccceEEEEECCCCCC---CCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence 457788888842 2334332 11 223555555443221 1123478999999999999999998764
No 129
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=84.10 E-value=0.73 Score=38.69 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEEEEEcCCCCCCCCCcccccCCC
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIESK 73 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~~~ 73 (348)
.+.|.|.+|.+||..||.|.+....
T Consensus 86 eFkLefdiP~tYP~tPPeI~Fp~ld 110 (168)
T 3kpa_A 86 EFEMNFDIPVTYPQAPPEIALPELE 110 (168)
T ss_dssp EEEEEEECCTTTTTSCCCCBCGGGT
T ss_pred EEEEEEeCCccCCCCCCEeeccccc
Confidence 5899999999999999999985543
No 130
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=83.77 E-value=1.6 Score=37.56 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCCceec-c--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVL-D--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~-~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+. ++.+.+. . +.-..+.+.|.|... .=..-.+.+.|.||++||..||.|.+...
T Consensus 29 ~RL~kEl~~l~~--~~~i~~~~p~~~nl~~W~~~igP~~t---pYegg~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 29 LRIQKDINELNL--PKTCDISFSDPDDLLNFKLVICPDEG---FYKSGKFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp HHHHHHHHTCCC--CTTEEEECSSTTCTTEEEEEECCCSG---GGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHhcCC--CCCeEEEecccccccceEEEECCCCC---CCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence 357778888832 2334332 1 122355555544321 11123478999999999999999998764
No 131
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=81.79 E-value=1.9 Score=36.72 Aligned_cols=65 Identities=28% Similarity=0.265 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCCC-ceec--cCC---CCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDE-CVVL--DSY---PPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd-~~v~--~~~---~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.=-++. +.+. ... -..+.+.|. |. +-. ..-.+.+.|.||++||..||.|.+...
T Consensus 38 ~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpY----egG~f~l~i~fp~~YP~~PP~v~F~T~ 110 (170)
T 2hlw_A 38 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY----ENRIYSLKIECGPKYPEAPPFVRFVTK 110 (170)
T ss_dssp HHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTT----SSCCBCEEEECCSSCTTSCCEEEECBC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCc----CCcEEEEEEECCCCCCCCCCeeEEecc
Confidence 35788898887632222 2222 111 235666665 32 211 122368899999999999999987654
No 132
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=80.96 E-value=1 Score=38.51 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCCCCCCcccccCC
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
.+.|.|.||..||..||.|.+...
T Consensus 84 ~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 84 EFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp EEEEEEECCTTTTTSCCCCBCGGG
T ss_pred EEEEEEECCCCCCCCCCeeeeCCC
Confidence 689999999999999999988543
No 133
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=80.88 E-value=3.2 Score=35.30 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCCceeccCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~~v~~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|..-= ..+. ..+.-..+.+.|. |... .=..-.+.+.|.||++||..||.|.+...
T Consensus 15 ~RL~~El~~l~~~~-~~v~-~~~~l~~w~~~I~GP~~t---pyegg~f~~~i~fp~~YP~~PP~v~F~t~ 79 (171)
T 1yf9_A 15 RRREMDYMRLCNST-RKVY-PSDTVAEFWVEFKGPEGT---PYEDGTWMLHVQLPSDYPFKSPSIGFCNR 79 (171)
T ss_dssp HHHHHHHHHHHSSS-SCEE-ECSSTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCC-CCCC-CCCCceEEEEEEECCCCC---CccCceEEEEEEcCCCCCCCCCeEEeecC
Confidence 45778888887421 1121 1222345666665 3211 11123588999999999999999987653
No 134
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=79.62 E-value=3.4 Score=38.94 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCCCc----ee--ccCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975 4 EEVAMELEAVQAVYGDEC----VV--LDSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72 (348)
Q Consensus 4 Ee~~~ElEAL~sIY~dd~----~v--~~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~ 72 (348)
-.+..|+..|+.=-+..+ .+ ..+.-..+.+.|. |... .=..-.+.|.|.||++||..||.|.+...
T Consensus 79 kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~T---pYegG~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 79 RRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADT---PYANGCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTS---TTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred HHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCC---CcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence 357889999975433221 11 1222235555554 2211 11223588999999999999999987654
No 135
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.43 E-value=0.29 Score=37.29 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=36.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT 196 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (348)
.+..|.||..+-..++. .++.+-.|.-.||..|+..=. .....-.
T Consensus 24 ~~~~C~vC~~~~s~~~~-----~ll~CD~C~~~fH~~Cl~p~~------------------------------vP~g~W~ 68 (88)
T 2l43_A 24 EDAVCSICMDGESQNSN-----VILFCDMCNLAVHQECYGVPY------------------------------IPEGQWL 68 (88)
T ss_dssp CCCCCSSCCSSSSCSEE-----EEEECSSSCCCCCHHHHTCSS------------------------------CCSSCCC
T ss_pred CCCcCCcCCCCCCCCCC-----CEEECCCCCchhhcccCCCCc------------------------------cCCCceE
Confidence 45789999876422111 133345778889999985310 0013458
Q ss_pred CCCCCcccCccchHH
Q 018975 197 CPVCRKVFHVKDLEH 211 (348)
Q Consensus 197 CPvCR~~~~~~d~~~ 211 (348)
||.|......++++|
T Consensus 69 C~~C~~~~~~~~~~~ 83 (88)
T 2l43_A 69 CRHCLQSRARPALEH 83 (88)
T ss_dssp CHHHHHHTTSCC---
T ss_pred CccccCccchhhhhh
Confidence 999998877777664
No 136
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.42 E-value=6.9 Score=29.47 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=23.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
.+..|.||- .|..++.. .+--|.-+||..||.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~-------pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLF-------PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCS-------SCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-ccccccee-------ccccccccccHhhcccc
Confidence 467899995 44443321 13468899999999873
No 137
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=76.94 E-value=1.4 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=24.1
Q ss_pred CCCCCCCccccccccCCCCccccCccccc-CCCCcccHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIV 156 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~ 156 (348)
.+...|++|..++..+. .++..- .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~------~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQ------DAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTS------CEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCC------CeEecccCccccCchhccC
Confidence 45678999999975433 244555 788889999973
No 138
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.72 E-value=0.8 Score=32.92 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
.+...|.||... ++ ++..-.|...||..|+...+
T Consensus 10 ~~~~~C~vC~~~----~~------ll~Cd~C~~~~H~~Cl~P~l 43 (66)
T 2lri_C 10 APGARCGVCGDG----TD------VLRCTHCAAAFHWRCHFPAG 43 (66)
T ss_dssp CTTCCCTTTSCC----TT------CEECSSSCCEECHHHHCTTT
T ss_pred CCCCCcCCCCCC----Ce------EEECCCCCCceecccCCCcc
Confidence 455789999743 21 33456889999999997653
No 139
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.53 E-value=1.4 Score=34.64 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCCCCCccccccccCCCCccccCccccc-CCCCcccHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIV 156 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~ 156 (348)
+...|+||..++..++. ++.+- .|.--||..|+.
T Consensus 2 ~~~~C~iC~~p~~~~~~------mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQD------AILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCCBCTTTCSBCCTTSC------EEECTTTTCCEEEGGGTT
T ss_pred CcCCCCCCCCccCCCCC------EEEecCCcccccccccCC
Confidence 45689999999854332 55555 788889999973
No 140
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.61 E-value=0.83 Score=36.34 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
..|.||+.+-......+..-.++....|...||..||....
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 57999987652211111112355667899999999997653
No 141
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.32 E-value=5.2 Score=29.37 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=20.7
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
...| ||..+...+ . ..+.+-.|..-||..|+.
T Consensus 12 ~~~C-~C~~~~d~~-~-----~MIqCd~C~~WfH~~Cvg 43 (79)
T 1wep_A 12 PVYC-LCRQPYNVN-H-----FMIECGLCQDWFHGSCVG 43 (79)
T ss_dssp CCCS-TTSCSCCSS-S-----CEEEBTTTCCEEEHHHHT
T ss_pred ccEE-EcCCccCCC-C-----ceEEcCCCCCcEEeeecC
Confidence 4566 787765221 1 244556788889999984
No 142
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.58 E-value=2.7 Score=29.52 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=23.8
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
....|+||..++.++. .++..-.|..-||..|+.
T Consensus 5 e~~~C~~C~~~~~~~~------~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 5 SSGQCGACGESYAADE------FWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SCCCCSSSCCCCCSSS------CEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCccCCCC------CEEEccCCCCCCCccccC
Confidence 4568999998864322 244556788889999973
No 143
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=66.09 E-value=1.9 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=14.4
Q ss_pred CCCCCCCCCCcccCccchH
Q 018975 192 GNMGTCPVCRKVFHVKDLE 210 (348)
Q Consensus 192 ~~~~~CPvCR~~~~~~d~~ 210 (348)
..++.||||...++...|.
T Consensus 4 ef~vqcpvcqq~mpaahin 22 (29)
T 3vhs_A 4 EFQVQCPVCQQMMPAAHIN 22 (29)
T ss_dssp -CEEECTTTCCEEEGGGHH
T ss_pred ceeeeChHHHHhCcHHHHH
Confidence 3667899999988776654
No 144
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.26 E-value=14 Score=28.88 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=25.6
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
.|...|.+|+..=.. +..+..-.++....|...||..||.
T Consensus 3 ~p~~~C~~C~~~~~~-~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQ-NREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTC-CTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhh-CcCCCchhceEhhhcCCCCCCchhc
Confidence 356789999875211 0011111356678899999999995
No 145
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=63.20 E-value=2.3 Score=28.76 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCCCccccccccCCCCccccCccccc-CCCCcccHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIV 156 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~ 156 (348)
-.|.||..++..+. .++..- .|.--||..|+.
T Consensus 3 c~cc~C~~p~~~~~------~mI~Cd~~C~~WfH~~Cvg 35 (52)
T 2kgg_A 3 CAAQNCQRPCKDKV------DWVQCDGGCDEWFHQVCVG 35 (52)
T ss_dssp CSCTTCCCCCCTTC------CEEECTTTTCCEEETTTTT
T ss_pred ccCCCCcCccCCCC------cEEEeCCCCCccCcccccC
Confidence 46888988874322 134445 677789999974
No 146
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=63.06 E-value=32 Score=29.61 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred EEEEEEEcCCCCCCCCCcccccCC-----CCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIES-----KGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVA 109 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~~-----~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE 109 (348)
...|.|.++.+||.++|.+...-+ .|-....+..+........+..-. .|+..+++-+
T Consensus 39 ~H~l~v~l~~~yp~~~P~~~~DlP~~~~~~w~~~ssL~~v~~qF~~~Le~lq~---Fwd~ldeID~ 101 (186)
T 3zqs_A 39 EHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKA---FWDVMDEIDE 101 (186)
T ss_dssp EEEEEEECCTTTTTSCCEEECCCSSCCCCCCCTTCCHHHHHHHHHHHHHHTHH---HHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCCeeEEcCCCCcccccCCCccHHHHHHHHHHHHHHHHH---HHHHHHhhhh
Confidence 457899999999999998754332 244444455555555554444332 4555555444
No 147
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.95 E-value=3.2 Score=35.87 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=25.6
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
.||||..++.+++.. .+++.+-.|...||..|..
T Consensus 4 ~CpiC~k~Y~~~~~~---~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYE---SKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp BCTTTCCBCTTCCTT---CCEEECTTTCCEEEGGGSS
T ss_pred cCCCCcCccCCcccC---CCeEECCCCCcccchhccc
Confidence 599999998765421 1355677889999999973
No 148
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=62.23 E-value=8.6 Score=28.66 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=26.4
Q ss_pred CCCCCCccccccccCCCCccccCcccccCC----CCcccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSC----FHCFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C----~H~FH~~Cl~~w~~ 160 (348)
...-|.+|-+.+.+.. |+ +| .|-||..|-..+++
T Consensus 14 a~l~CtlC~erLEdtH-------FV---QCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-------FV---QCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTT-------SE---ECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-------ee---eCCCccCCeeeccccHHHHH
Confidence 4568999999985433 43 44 79999999999987
No 149
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.84 E-value=3.5 Score=29.04 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.+..|.||.......+. .++..-.|.-.||..|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~-----~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPN-----EMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCBSSSCCCCCBTTB-----CEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCC-----CEEECCCCChHHHhhhCCC
Confidence 46789999987543222 1334567888899999764
No 150
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.67 E-value=7.4 Score=31.81 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hcCCchhhHHHHHHHHHhh-hCCCCCCCCCccccccc-cCCCCccccCcccccCCCCcc
Q 018975 74 GLDDQRQKHLISCIQDKAHE-LTSCLMLVALCEEAVAKLS-AMNHPDGDCPLCLYPLF-RKDKNVEVLPFMKLMSCFHCF 150 (348)
Q Consensus 74 GL~~~~i~~L~~~L~~~~ee-~~G~~ml~elie~~kE~Lt-e~n~~~~~C~ICl~~f~-~~~~~~~~~p~~k~~~C~H~F 150 (348)
.|+++....|+.-|....+. ......+-.+.+.+.+.-. ........|.+|..+|. ..+. + ..+..|.|.+
T Consensus 9 ~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~-g-----~~C~~C~~~V 82 (134)
T 1zbd_B 9 ELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSA-S-----VVCEDCKKNV 82 (134)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCC-E-----EECTTTCCEE
T ss_pred cCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCC-C-----CCCCCCCccc
Confidence 45666666665544432211 1111223333333222111 11245678999999993 2221 1 1357899999
Q ss_pred cHHHH
Q 018975 151 HSECI 155 (348)
Q Consensus 151 H~~Cl 155 (348)
|..|-
T Consensus 83 C~~C~ 87 (134)
T 1zbd_B 83 CTKCG 87 (134)
T ss_dssp ETTSE
T ss_pred ccccC
Confidence 99994
No 151
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=57.54 E-value=1.4 Score=37.74 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
+..|.+|..+ ++ ++.+-.|.-.||..|+..-
T Consensus 4 ~~~C~~C~~~---g~-------ll~Cd~C~~~~H~~C~~p~ 34 (184)
T 3o36_A 4 EDWCAVCQNG---GE-------LLCCEKCPKVFHLSCHVPT 34 (184)
T ss_dssp CSSCTTTCCC---SS-------CEECSSSSCEECTTTSSSC
T ss_pred CCccccCCCC---Ce-------eeecCCCCcccCccccCCC
Confidence 4679999854 22 2335678999999997553
No 152
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.00 E-value=6.9 Score=30.05 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=19.8
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
..| ||-..... . .++.+-.|.-.||..|+.
T Consensus 29 vrC-iC~~~~~~--~-----~mi~Cd~C~~w~H~~C~~ 58 (98)
T 2lv9_A 29 TRC-ICGFTHDD--G-----YMICCDKCSVWQHIDCMG 58 (98)
T ss_dssp CCC-TTSCCSCS--S-----CEEEBTTTCBEEETTTTT
T ss_pred EEe-ECCCccCC--C-----cEEEcCCCCCcCcCcCCC
Confidence 457 77655322 1 245567889999999974
No 153
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=56.40 E-value=6.7 Score=33.16 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCCCCCCcccccC
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
.+-|.|.||..||..||.+++..
T Consensus 82 n~pi~IwlP~~YP~~PP~v~v~p 104 (162)
T 3r3q_A 82 SIPVIMWVPSMYPVKPPFISINL 104 (162)
T ss_dssp EEEEEEECCTTTTTSCCEEEECG
T ss_pred cccEEEEeCcccCCCCCEEEEEC
Confidence 47789999999999999998853
No 154
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.31 E-value=26 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC 197 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 197 (348)
...|.||-+.+--..... +|+.+..|.--.|..|..-=.+ .....|
T Consensus 16 ~qiCqiCGD~VG~~~~Ge---~FVAC~eC~FPvCrpCyEYErk-------------------------------eG~q~C 61 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGD---LFVACNECGFPACRPCYEYERR-------------------------------EGTQNC 61 (93)
T ss_dssp SCBCSSSCCBCCBCSSSS---BCCSCSSSCCCCCHHHHHHHHH-------------------------------TSCSSC
T ss_pred CCccccccCccccCCCCC---EEEeeeccCChhhHHHHHHHHh-------------------------------ccCccc
Confidence 468999998865432221 6888888988889999743322 356789
Q ss_pred CCCCcccC
Q 018975 198 PVCRKVFH 205 (348)
Q Consensus 198 PvCR~~~~ 205 (348)
|-|...+.
T Consensus 62 pqCktrYk 69 (93)
T 1weo_A 62 PQCKTRYK 69 (93)
T ss_dssp TTTCCCCC
T ss_pred cccCCccc
Confidence 99988773
No 155
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.06 E-value=25 Score=29.31 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH-hcCCchhhHHHHHHHHH------hhh-CCCCCCCCCccccccccCCCCccccCccc
Q 018975 71 ESKGLDDQRQKHLISCIQDKAHE-LTSCLMLVALCEEAVAK------LSA-MNHPDGDCPLCLYPLFRKDKNVEVLPFMK 142 (348)
Q Consensus 71 ~~~GL~~~~i~~L~~~L~~~~ee-~~G~~ml~elie~~kE~------Lte-~n~~~~~C~ICl~~f~~~~~~~~~~p~~k 142 (348)
+...|+++..+.|+.-|....+. ..-+..+-.|.+.+... +.. .......|.+|+.+|.--...+ ..
T Consensus 13 dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g-----~~ 87 (153)
T 2zet_C 13 DLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSR-----RQ 87 (153)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCC-----EE
T ss_pred CcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCC-----Cc
Confidence 34568888888777766542211 11122344444443321 111 1124679999999875433322 23
Q ss_pred ccCCCCcccHHHH
Q 018975 143 LMSCFHCFHSECI 155 (348)
Q Consensus 143 ~~~C~H~FH~~Cl 155 (348)
+..|.|.+|..|-
T Consensus 88 C~~C~~~VC~~C~ 100 (153)
T 2zet_C 88 CLECSLFVCKSCS 100 (153)
T ss_dssp CTTTCCEECGGGE
T ss_pred CCCCCchhhcccc
Confidence 5799999999996
No 156
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.26 E-value=8.7 Score=36.79 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=13.6
Q ss_pred CCCCCCCCCcccCccch
Q 018975 193 NMGTCPVCRKVFHVKDL 209 (348)
Q Consensus 193 ~~~~CPvCR~~~~~~d~ 209 (348)
..-.||+|.+.+...||
T Consensus 287 ~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 287 PTWQCPVCQIDIALENL 303 (371)
T ss_dssp CCCBCTTTCCBCCGGGE
T ss_pred CceeCCCCCcccCHHHe
Confidence 45689999999977665
No 157
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=53.10 E-value=3.4 Score=28.89 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
....|.||... + . ++..-.|...||..|+..
T Consensus 8 ~~~~C~vC~~~---g-~------ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-E------LLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCCC---S-S------CBCCSSSCCCBCSSSSSS
T ss_pred CCCcCCCCCCC---C-C------EEEcCCCCHHHcccccCC
Confidence 35679999753 1 1 233457888899999854
No 158
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=52.99 E-value=8.7 Score=31.87 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.7
Q ss_pred EEEEEEEcCCCCCCCCCcccccC
Q 018975 49 EAVIGIRASPKYPEHPPRIDLIE 71 (348)
Q Consensus 49 ~i~L~i~lp~~YP~~~P~i~i~~ 71 (348)
.+-|.|.+|.+||..+|.+++..
T Consensus 70 ~iPi~Iwlp~~YP~~pP~vfv~p 92 (146)
T 3obq_A 70 NIPICLWLLDTYPYNPPICFVKP 92 (146)
T ss_dssp EEEEEEECCTTTTTSCCEEEECC
T ss_pred cceEEEEeCccCCCCCCEEEEeC
Confidence 46678999999999999998754
No 159
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=50.13 E-value=28 Score=37.46 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=40.2
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCC-CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG 195 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (348)
...-|||-+..+.+ |.+ ++-+ +.|-..+|.+|+. ...
T Consensus 890 ~~F~cPIs~~lM~D--------PVi--lpsG~~TydR~~I~~wl~--------------------------------~~~ 927 (968)
T 3m62_A 890 DEFLDPLMYTIMKD--------PVI--LPASKMNIDRSTIKAHLL--------------------------------SDS 927 (968)
T ss_dssp GGGBCTTTCSBCSS--------EEE--CTTTCCEEEHHHHHHHHT--------------------------------TCC
T ss_pred HHhCCcchhhHHhC--------CeE--cCCCCEEECHHHHHHHHh--------------------------------cCC
Confidence 34679999998864 655 6777 5899999999984 346
Q ss_pred CCCCCCcccCccch
Q 018975 196 TCPVCRKVFHVKDL 209 (348)
Q Consensus 196 ~CPvCR~~~~~~d~ 209 (348)
+||+=|.++...++
T Consensus 928 tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 928 TDPFNRMPLKLEDV 941 (968)
T ss_dssp BCTTTCCBCCGGGC
T ss_pred CCCCCCCCCCcccc
Confidence 89999999976554
No 160
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=49.61 E-value=3.2 Score=32.45 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=24.8
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
.+..|.||...= +.. .++....|...||..||...
T Consensus 6 ~~~~C~~C~~~g---~~~----~ll~C~~C~~~~H~~Cl~~~ 40 (111)
T 2ysm_A 6 SGANCAVCDSPG---DLL----DQFFCTTCGQHYHGMCLDIA 40 (111)
T ss_dssp CCSCBTTTCCCC---CTT----TSEECSSSCCEECTTTTTCC
T ss_pred CCCCCcCCCCCC---CCc----CCeECCCCCCCcChHHhCCc
Confidence 467899998762 110 23456789999999998654
No 161
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=47.97 E-value=2.3 Score=37.23 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=22.4
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
.+..|.+|..+ ++ ++.+-.|...||..|+..-
T Consensus 6 ~~~~C~~C~~~---g~-------ll~Cd~C~~~~H~~Cl~p~ 37 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-------LLCCEKCPKVFHLTCHVPT 37 (207)
T ss_dssp SCSSBTTTCCC---EE-------EEECSSSSCEECTTTSSSC
T ss_pred CCCCCCCCCCC---Cc-------eEEcCCCCCccCCccCCCC
Confidence 35789999744 11 2335688999999998653
No 162
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.83 E-value=3.5 Score=29.75 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=12.4
Q ss_pred cccCCCCcccHHHHHH
Q 018975 142 KLMSCFHCFHSECIVR 157 (348)
Q Consensus 142 k~~~C~H~FH~~Cl~~ 157 (348)
..-.|...||..||..
T Consensus 35 ~CD~C~~~yH~~Cl~P 50 (70)
T 3asl_A 35 MCDECDMAFHIYCLDP 50 (70)
T ss_dssp ECTTTCCEEEGGGSSS
T ss_pred EcCCCCCceecccCCC
Confidence 3457889999999854
No 163
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=47.22 E-value=7.8 Score=30.00 Aligned_cols=11 Identities=27% Similarity=1.168 Sum_probs=10.0
Q ss_pred ccHHHHHHHHH
Q 018975 150 FHSECIVRWWN 160 (348)
Q Consensus 150 FH~~Cl~~w~~ 160 (348)
||..||.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999999976
No 164
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=47.00 E-value=4.2 Score=36.35 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=11.8
Q ss_pred ccccCCCCcccHHHHHH
Q 018975 141 MKLMSCFHCFHSECIVR 157 (348)
Q Consensus 141 ~k~~~C~H~FH~~Cl~~ 157 (348)
+.+-.|...||..|+..
T Consensus 190 L~CD~C~~~yH~~CL~P 206 (226)
T 3ask_A 190 LMCDECDMAFHIYCLDP 206 (226)
T ss_dssp EECSSSCCEECSCC--C
T ss_pred EEcCCCCcceeCccCCC
Confidence 34568889999999864
No 165
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.95 E-value=13 Score=35.49 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.1
Q ss_pred CCCCCCCCCcccCccchH
Q 018975 193 NMGTCPVCRKVFHVKDLE 210 (348)
Q Consensus 193 ~~~~CPvCR~~~~~~d~~ 210 (348)
..-.||+|.+.+..+||.
T Consensus 253 ~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 253 PTWICPVCDKKAAYESLI 270 (360)
T ss_dssp CCCBCTTTCSBCCGGGEE
T ss_pred CCeECCCCCcccCHHHeE
Confidence 456899999999877653
No 166
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.58 E-value=8.1 Score=29.86 Aligned_cols=11 Identities=27% Similarity=1.054 Sum_probs=10.0
Q ss_pred ccHHHHHHHHH
Q 018975 150 FHSECIVRWWN 160 (348)
Q Consensus 150 FH~~Cl~~w~~ 160 (348)
||..||.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999999976
No 167
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.97 E-value=14 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=20.4
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.|.||...-.. + .++..-.|...||..|+..
T Consensus 2 ~C~vC~~~~~~-~------~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGED-D------KLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCC-S------CCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCC-C------CEEECCCCChhhCcccCCC
Confidence 58889865211 1 1334567888999999854
No 168
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.84 E-value=4.2 Score=29.96 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=12.6
Q ss_pred cccCCCCcccHHHHHH
Q 018975 142 KLMSCFHCFHSECIVR 157 (348)
Q Consensus 142 k~~~C~H~FH~~Cl~~ 157 (348)
..-.|...||..||..
T Consensus 43 ~CD~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 43 LCDECNVAYHIYCLNP 58 (77)
T ss_dssp ECSSSCCEEETTSSSS
T ss_pred EcCCCCccccccccCC
Confidence 3457889999999854
No 169
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=45.23 E-value=13 Score=39.16 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=31.5
Q ss_pred CCCCCccccccccCCCCccccCcccccCCC--------------------CcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCF--------------------HCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~--------------------H~FH~~Cl~~w~ 159 (348)
...|+=||..+.+..+-...-||+-+|.|+ --+|..|-..|-
T Consensus 111 ~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~ 172 (761)
T 3vth_A 111 MGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYH 172 (761)
T ss_dssp BCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHT
T ss_pred ccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhc
Confidence 368888888887666566667888777776 336899999983
No 170
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=45.18 E-value=9.5 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
..|--|+..|.... ..+...|.+.|+.+|=
T Consensus 16 ~~C~~C~~~~~~~~-------~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQH-------VYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSE-------EECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCc-------cEECCccCcCcccchh
Confidence 46999999985311 2346899999999994
No 171
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.89 E-value=45 Score=29.27 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.+...|.+|...|.--... .-+-.|+++||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~Rr------hHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRK------HHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCC------EECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccc------cccCCCcCEeChhhcCC
Confidence 3456899999998642210 12458999999999643
No 172
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=40.87 E-value=31 Score=27.91 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
....|.||-++= + .+-.-.|...||..||.+-
T Consensus 56 ~~~~C~vC~dGG----~------LlcCd~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 56 MDEQCRWCAEGG----N------LICCDFCHNAFCKKCILRN 87 (129)
T ss_dssp CBSSCTTTCCCS----E------EEECSSSSCEEEHHHHHHH
T ss_pred CCCcCeecCCCC----e------eEecCCCchhhhHHHhCCC
Confidence 356799998651 1 1123588999999999986
No 173
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.73 E-value=11 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=21.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
...|+.|-..+...+ +++.-+..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~E---------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE---------KVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG---------CCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce---------eEEECCeEecccCC
Confidence 357999998876543 34566889999985
No 174
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.11 E-value=4.8 Score=31.65 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=19.2
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.|.||...-.+++. ++..-.|...||..|+..
T Consensus 63 ~C~vC~~~~~~~~~------ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 63 TCSSCRDQGKNADN------MLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp CBTTTCCCCCTTCC------CEECTTTCCEECGGGCSS
T ss_pred ccccccCcCCCccc------eEEcCCCCCeeecccCCC
Confidence 56777654211111 333457889999999754
No 175
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.96 E-value=14 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
...|+||..+.. ++ .++.+-.|.-.||..|+..
T Consensus 18 ~~~C~~C~~~~~-~~------~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 18 IWICPGCNKPDD-GS------PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp EECBTTTTBCCS-SC------CEEECSSSSSEEEHHHHTC
T ss_pred CcCCCCCCCCCC-CC------CEEEcCCCCcccccccCCC
Confidence 346999987642 11 1334557788899999843
No 176
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.22 E-value=24 Score=25.31 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=24.1
Q ss_pred CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
.....|.||..+-..+++ .++..-.|.-.||..|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~-----~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSN-----VILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CSSCSCSSSCCCCCCSSS-----CEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCC-----CEEECCCCCCccccccCC
Confidence 456789999876422222 133456888899999974
No 177
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=37.63 E-value=5.5 Score=34.35 Aligned_cols=30 Identities=30% Similarity=0.752 Sum_probs=21.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
...|.+|..+ ++ ++.+..|...||..|+..
T Consensus 2 ~~~C~~C~~~---g~-------ll~Cd~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 2 ATICRVCQKP---GD-------LVMCNQCEFCFHLDCHLP 31 (189)
T ss_dssp CCCBTTTCCC---SS-------CCCCTTTCCBCCSTTSTT
T ss_pred CCcCccCCCC---Cc-------eeECCCCCchhccccCCC
Confidence 4679999854 22 233567888899999854
No 178
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=37.24 E-value=20 Score=29.50 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=24.4
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
....|.+|-.+= + ++-.-.|...||..||.+-+
T Consensus 62 ~~d~C~vC~~GG----~------LlcCD~Cpr~Fh~~Cl~p~l 94 (142)
T 2lbm_A 62 MDEQCRWCAEGG----N------LICCDFCHNAFCKKCILRNL 94 (142)
T ss_dssp CBCSCSSSCCCS----S------EEECSSSCCEEEHHHHHHHT
T ss_pred CCCeecccCCCC----c------EEeCCCCCCeeeHhhcCCCC
Confidence 357899998651 1 23356889999999999764
No 179
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.99 E-value=12 Score=28.07 Aligned_cols=35 Identities=14% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
...|.||...-...+. .++.+-.|...||..|+..
T Consensus 16 ~~~C~vC~~~~~~~~~-----~ll~CD~C~~~yH~~Cl~P 50 (88)
T 1wev_A 16 GLACVVCRQMTVASGN-----QLVECQECHNLYHQDCHKP 50 (88)
T ss_dssp CCSCSSSCCCCCCTTC-----CEEECSSSCCEEETTTSSS
T ss_pred CCcCCCCCCCCCCCCC-----ceEECCCCCCeEcCccCCC
Confidence 3689999976332111 1333467889999999865
No 180
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.29 E-value=6.2 Score=27.57 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=27.7
Q ss_pred CCCCCccccccccCCCCccccCcccccC--CCCcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMS--CFHCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~--C~H~FH~~Cl~~w~ 159 (348)
.-.||-|...+...+. ...|.... |.|.|+..|+..|-
T Consensus 6 ~k~CP~C~~~Iek~~G----CnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGG----CNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCTTTCCCCSSCCS----CCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ceECcCCCCeeEeCCC----CCcEEECCCCcCCEEeeCcCCCcc
Confidence 4689999998866442 23444445 88999999998883
No 181
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.24 E-value=11 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=10.3
Q ss_pred CCCCCCCCcccCc
Q 018975 194 MGTCPVCRKVFHV 206 (348)
Q Consensus 194 ~~~CPvCR~~~~~ 206 (348)
+..||+|+...+.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3579999998854
No 182
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.87 E-value=14 Score=35.31 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW 159 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~ 159 (348)
...|.+|-..|.--... ..+-.|+++||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~------h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRR------HHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------------
T ss_pred CCcCCCcCCCCCCcchh------hhcccCcCEeehhhCCCee
Confidence 46899999988642210 1245899999999987653
No 183
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.21 E-value=11 Score=27.80 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=25.6
Q ss_pred CCCCCc--cccccccCCCCccccCccccc-----CCCCcccHHHHHHH
Q 018975 118 DGDCPL--CLYPLFRKDKNVEVLPFMKLM-----SCFHCFHSECIVRW 158 (348)
Q Consensus 118 ~~~C~I--Cl~~f~~~~~~~~~~p~~k~~-----~C~H~FH~~Cl~~w 158 (348)
..-||- |-..+..+... +.+... .|+|.|+..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~----~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQ----RKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCT----TSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCC----CcCCCCCCCCCCCCCeeccccCccc
Confidence 456887 87777654321 223344 79999999998887
No 184
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.01 E-value=10 Score=23.44 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.5
Q ss_pred CCCCCCCcccCcc
Q 018975 195 GTCPVCRKVFHVK 207 (348)
Q Consensus 195 ~~CPvCR~~~~~~ 207 (348)
..||+|.+.+...
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 5799999988654
No 185
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.73 E-value=75 Score=27.54 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
+...|.+|...|.--..- ..+-.|++.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rr------hhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRK------HHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCC------EECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccc------cccCCcCCEEChHHhCC
Confidence 457899999998642210 12357999999999643
No 186
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.55 E-value=9.8 Score=29.79 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.5
Q ss_pred CCCCCCCCCcc
Q 018975 193 NMGTCPVCRKV 203 (348)
Q Consensus 193 ~~~~CPvCR~~ 203 (348)
....||.|+..
T Consensus 83 kPsrCP~CkSe 93 (105)
T 2gmg_A 83 IPSRCPKCKSE 93 (105)
T ss_dssp CCSSCSSSCCC
T ss_pred CCCCCcCCCCC
Confidence 45789999763
No 187
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.31 E-value=24 Score=26.80 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=8.7
Q ss_pred CCCCCCCCCccc
Q 018975 193 NMGTCPVCRKVF 204 (348)
Q Consensus 193 ~~~~CPvCR~~~ 204 (348)
..-.||.|+...
T Consensus 75 g~W~Cp~C~~~~ 86 (91)
T 1weu_A 75 GKWFCPRCSQES 86 (91)
T ss_dssp SSCCCTTTCCCC
T ss_pred CCEECcCccCcC
Confidence 346899998754
No 188
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=30.54 E-value=28 Score=36.51 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCC--------------------cccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFH--------------------CFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H--------------------~FH~~Cl~~w~~ 160 (348)
+...|+=||..+.+-.+-...-||+-+|.|+= -+|..|-..|-+
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~d 168 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYED 168 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHC
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCC
Confidence 34688888888776555555678887777753 358999999843
No 189
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=29.58 E-value=21 Score=29.79 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
...| ||..+...+. ..+.+-.|...||..|+.
T Consensus 8 ~~~C-~C~~~~~~~~------~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 8 KLYC-ICKTPEDESK------FYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp CEET-TTTEECCTTS------CEEECTTTCCEEEHHHHT
T ss_pred CcEe-eCCCCCCCCC------CEeECCCCCchhChhhcC
Confidence 3568 9987643211 244556788889999984
No 190
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.96 E-value=1.1e+02 Score=24.12 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
...|.+|...|.--..- .-+-.|+++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~Rr------HHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRR------HHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCC------EECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCcccccccc------ccCCCCCeEEChHHhCC
Confidence 35799999998642110 12348999999999643
No 191
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=26.89 E-value=28 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.540 Sum_probs=22.1
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.+..|.||... ++ ++..-.|.-.||..|+..
T Consensus 4 ~~~~C~vC~~~---g~-------ll~Cd~C~~~fH~~Cl~p 34 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-------LLMCDTCSRVYHLDCLDP 34 (60)
T ss_dssp CCSSCTTTCCC---SS-------CEECSSSSCEECGGGSSS
T ss_pred CCCCCcCCCCC---Cc-------EEEcCCCCcCEECCcCCC
Confidence 35789999864 11 334568888999999854
No 192
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=26.86 E-value=99 Score=29.10 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=34.4
Q ss_pred eEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHH
Q 018975 48 VEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDK 90 (348)
Q Consensus 48 v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~ 90 (348)
-.+.|.+.+++.+|. ..+.+.++..|++.+.++++..++..
T Consensus 270 G~fklviKy~P~vP~--~KV~V~DPnnLTd~EKekVkeaVKkA 310 (360)
T 3qc5_X 270 GQFKLIIRFRIKTPE--NTVFVNNPNQLTEVEKNLVREAVKKS 310 (360)
T ss_dssp TEEEEEEECCCCCCS--SCEEESCTTSCCHHHHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCC--cceEecCcccCCHHHHHHHHHHHHHh
Confidence 357788899999996 56778899999999999999988874
No 193
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.82 E-value=69 Score=21.57 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.6
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+.- .|.+.++.+.|.+.+.+...+.+|.
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~ 32 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGM 32 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 5566655 7899999999999999988887764
No 194
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.47 E-value=42 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
....|.||... + . ++..-.|...||..|+..
T Consensus 10 ~~~~C~vC~~~---g-~------ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-E------IILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC---S-S------EEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCCC---C-c------EEECCCCChhhhhhccCC
Confidence 35789999863 1 1 334467888899999865
No 195
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=25.34 E-value=29 Score=35.72 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCC--------------------cccHHHHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFH--------------------CFHSECIVRWWN 160 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H--------------------~FH~~Cl~~w~~ 160 (348)
+...|+=||..+.+-.+-...-||+-+|.|+= -+|..|-..|-+
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~d 79 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRD 79 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHC
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCC
Confidence 34688888888776555556678887777753 358899999843
No 196
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=25.05 E-value=24 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.585 Sum_probs=21.9
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
.+..|.||... ++ ++..-.|.-.||..|+..
T Consensus 7 ~~~~C~vC~~~---g~-------ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-------LICCDGCPRAFHLACLSP 37 (66)
T ss_dssp CCCSBSSSSCC---SS-------CEECSSCCCEECTTTSSS
T ss_pred CCCCCccCCCC---CC-------EEEcCCCChhhcccccCC
Confidence 36789999864 11 333467888899999854
No 197
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.99 E-value=59 Score=21.33 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=27.0
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 018975 64 PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCL 98 (348)
Q Consensus 64 ~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ 98 (348)
-|.|.+.-..|.+.++...|.+.+.+...+.+|.+
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 36666666678899999999999888888777643
No 198
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.58 E-value=8.7 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.493 Sum_probs=24.2
Q ss_pred CCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158 (348)
Q Consensus 120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w 158 (348)
-||-|-..+..+... +-+.+..|+|.|+..|-..|
T Consensus 27 wCP~C~~~~~~~~~~----~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQ----LEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSC----SCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCC----CceEeCCCCCccccccCCch
Confidence 388888877554321 22345579999999998776
No 199
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.39 E-value=13 Score=28.14 Aligned_cols=31 Identities=29% Similarity=0.732 Sum_probs=21.0
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
....|.+|..+ ++ ++.+-.|.-.||..|+..
T Consensus 24 n~~~C~vC~~~---g~-------LL~CD~C~~~fH~~Cl~P 54 (88)
T 1fp0_A 24 SATICRVCQKP---GD-------LVMCNQCEFCFHLDCHLP 54 (88)
T ss_dssp SSSCCSSSCSS---SC-------CEECTTSSCEECTTSSST
T ss_pred CCCcCcCcCCC---CC-------EEECCCCCCceecccCCC
Confidence 35789999864 11 233456777799999855
No 200
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=24.33 E-value=62 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=25.3
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+.-..|.+.++.+.|.+.+.+...+.+|.
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~ 33 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGA 33 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 455555556789999999999999888887763
No 201
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=23.88 E-value=63 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=25.2
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+.-..|.+.++.+.|.+.+.+...+.+|.
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~ 33 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDA 33 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 445555456789999999999998888877764
No 202
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.70 E-value=22 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=22.0
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
....|.||...-.. + .++.+-.|...||..|+..
T Consensus 15 ~~~~C~vC~~~~~~-~------~ll~CD~C~~~~H~~Cl~P 48 (92)
T 2e6r_A 15 DSYICQVCSRGDED-D------KLLFCDGCDDNYHIFCLLP 48 (92)
T ss_dssp CCCCCSSSCCSGGG-G------GCEECTTTCCEECSSSSSS
T ss_pred CCCCCccCCCcCCC-C------CEEEcCCCCchhccccCCC
Confidence 34679999865311 1 1333457888899999853
No 203
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.36 E-value=58 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=19.7
Q ss_pred CCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
..| ||..+.. +. .++.+-.|..-||..|+.
T Consensus 17 ~~C-~C~~~~~--~~-----~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 17 LYC-ICRQPHN--NR-----FMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCS-TTCCCCC--SS-----CEEECSSSCCEEEHHHHS
T ss_pred CEE-ECCCccC--CC-----CEEEeCCCCCcEeCeEEc
Confidence 457 7877653 11 134456788889999984
No 204
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.56 E-value=52 Score=25.51 Aligned_cols=13 Identities=31% Similarity=0.513 Sum_probs=11.3
Q ss_pred ccCCCCcccHHHH
Q 018975 143 LMSCFHCFHSECI 155 (348)
Q Consensus 143 ~~~C~H~FH~~Cl 155 (348)
+-.|.+.||..|+
T Consensus 5 c~~c~~w~H~~c~ 17 (140)
T 2ku7_A 5 CGKCDRWVHSKCE 17 (140)
T ss_dssp CSCCSSCHHHHHC
T ss_pred cccCCCccCCccc
Confidence 4579999999996
No 205
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.53 E-value=56 Score=22.46 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=20.8
Q ss_pred CCCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI 155 (348)
Q Consensus 118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl 155 (348)
...|.-|-.++...+. + +..-+..||..|+
T Consensus 5 ~~~C~~C~~~I~~~~~------~--~~a~~~~~H~~CF 34 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR------K--LEYGGQTWHEHCF 34 (72)
T ss_dssp CCBCSSSCCBCCSSSC------E--ECSTTCCEETTTC
T ss_pred CCCCccCCCccccCcc------E--EEECccccCcccC
Confidence 3579999998875332 1 2345788999994
No 206
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.48 E-value=70 Score=21.68 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=25.9
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCL 98 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ 98 (348)
|.|.+.-..|.+.++...|.+.+.+...+.+|.+
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p 34 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTP 34 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 4455544568899999999999999888877643
No 207
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.30 E-value=62 Score=21.55 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.4
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 018975 65 PRIDLIESKGLDDQRQKHLISCIQDKAHELTSC 97 (348)
Q Consensus 65 P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~ 97 (348)
|.|.+....|.+.++...|.+.|.+...+.+|.
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~ 34 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGE 34 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445555556789999999999999988887774
No 208
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.04 E-value=81 Score=21.52 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.7
Q ss_pred CcccccCCC---CCCHHHHHHHHHHHHHHHHHhcCCc
Q 018975 65 PRIDLIESK---GLDDQRQKHLISCIQDKAHELTSCL 98 (348)
Q Consensus 65 P~i~i~~~~---GL~~~~i~~L~~~L~~~~ee~~G~~ 98 (348)
|.|.+.-.. |.+.++...|.+.+.+...+.+|.+
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p 37 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKN 37 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 445554455 7899999999999999888877643
No 209
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.73 E-value=52 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV 156 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~ 156 (348)
++..|.+|...|.--... .-.-.|+++|+..|..
T Consensus 10 ~~~~C~~C~~~F~~~~Rr------HHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRK------HHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CCSBCTTTCCBCBTTBCC------EECTTTCCEECGGGSC
T ss_pred cCCcccCCCCccCCcccc------ccCCCCCEEEcccccC
Confidence 346899999998642110 1234789999999964
No 210
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.08 E-value=30 Score=23.32 Aligned_cols=31 Identities=16% Similarity=0.540 Sum_probs=22.2
Q ss_pred CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975 117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR 157 (348)
Q Consensus 117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~ 157 (348)
....|.||... ++ ++..-.|...||..|+..
T Consensus 8 ~~~~C~vC~~~---g~-------ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 8 HEDFCSVCRKS---GQ-------LLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SCCSCSSSCCS---SC-------CEECSSSSCEECSSSSSS
T ss_pred CCCCCccCCCC---Ce-------EEEcCCCCcceECccCCC
Confidence 45789999864 11 334568888999999854
No 211
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.07 E-value=4.6 Score=31.19 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.4
Q ss_pred CCCCCCCCCcccC
Q 018975 193 NMGTCPVCRKVFH 205 (348)
Q Consensus 193 ~~~~CPvCR~~~~ 205 (348)
....||-|.+++.
T Consensus 60 ~~a~CPdC~q~Le 72 (101)
T 2jne_A 60 MKALCPDCHQPLQ 72 (101)
T ss_dssp EEEECTTTCSBCE
T ss_pred ccccCcchhhHHH
Confidence 4568999999884
Done!