BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018977
         (348 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
           Carboxylase From Maize
 pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
           Carboxylase From Maize
          Length = 970

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 14  HLRSRKSSTHSCLSRLCPYKGL--GCSAYNQA-VLRNPYSSAQNGFQCITRKRVGFSWPN 70
            LR +   T   L ++  +K +  G     Q  VLRNPY +  N FQ  T KR+    PN
Sbjct: 859 QLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRD--PN 916

Query: 71  F 71
           F
Sbjct: 917 F 917


>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
           Pyrococcus Abyssi
 pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
           Pyrococcus Abyssi
          Length = 438

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 37  CSAYNQAVLRNPYSSAQNGFQCITRKRVGFSWPNFDLKLNRRCYDIKFSRNVVVRSQL 94
           C A+    +R  ++S ++ F+ I    +   WPN +++  R+ Y  +    V V  ++
Sbjct: 246 CLAHRGTKVRKXHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKI 303


>pdb|2RJO|A Chain A, Crystal Structure Of Twin-Arginine Translocation Pathway
           Signal Protein From Burkholderia Phytofirmans
          Length = 332

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 275 AFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIH-KPIQGHDAG--- 330
           AF KGA S A   G+P VP+T  G+ +   + +  +L +    +V++  P    DA    
Sbjct: 22  AFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIV 81

Query: 331 ELCNEA 336
           E C++A
Sbjct: 82  EACSKA 87


>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
           Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
           A Resolution
 pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
           Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
           A Resolution
          Length = 494

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 271 GKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLN-EGTIKVVIHKPIQGHDA 329
           G LGA + G+     + G            K +P G+EGM+  +GT+K V+H+ + G  +
Sbjct: 397 GSLGAMRSGSADRYGQEG----------ENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRS 446

Query: 330 G 330
           G
Sbjct: 447 G 447


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,675
Number of Sequences: 62578
Number of extensions: 392277
Number of successful extensions: 1076
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 4
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)