Query 018977
Match_columns 348
No_of_seqs 287 out of 2084
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 5.7E-24 2E-28 199.8 9.8 175 170-346 110-343 (367)
2 1ic9_A TH10AOX; three stranded 38.1 9.2 0.00031 21.1 0.5 15 30-44 10-24 (29)
3 1yk0_E Atrial natriuretic fact 19.6 60 0.0021 18.0 1.7 18 27-44 8-25 (26)
4 1r9i_A MU-conotoxin PIIIA; cys 13.7 63 0.0022 17.7 0.8 11 21-31 7-17 (26)
5 1vli_A Spore coat polysacchari 12.9 8E+02 0.027 22.8 8.9 106 183-291 112-221 (385)
6 4dbe_A Orotidine 5'-phosphate 12.3 94 0.0032 26.6 2.1 29 318-346 184-213 (222)
7 3ivz_A Nitrilase; alpha-beta s 11.9 2.5E+02 0.0085 24.0 4.8 42 251-292 29-84 (262)
8 2wqp_A Polysialic acid capsule 11.8 8.3E+02 0.028 22.3 9.6 106 183-291 102-210 (349)
9 1f89_A 32.5 kDa protein YLR351 11.6 2.7E+02 0.0091 24.2 5.0 40 254-293 43-96 (291)
10 2w1v_A Nitrilase-2, nitrilase 11.5 2.6E+02 0.0087 24.1 4.8 42 251-292 30-81 (276)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.90 E-value=5.7e-24 Score=199.79 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=133.6
Q ss_pred EEEEEc-------cccCCCCCCCEEEEecCCCchhHHHHHHhC-C-------ceEEEEcccccccChhhHHH--HhcCcE
Q 018977 170 KLEIEG-------LENLPSSDTPAVYVSNHQSFLDIYTLLTLG-K-------SFKFISKTGIFLFPVIGWAM--SMMGVI 232 (348)
Q Consensus 170 ~v~v~G-------~e~lp~~~~~~Iiv~NH~S~lD~~~l~~l~-~-------~~~~v~k~~l~~~p~lg~~~--~~~g~i 232 (348)
++++.| .|+++. ++++|+++||+|++|++++..+. + ++.||+++++.++|+...+- +.++++
T Consensus 110 ~s~V~G~e~~~~~~E~l~~-~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI 188 (367)
T 1iuq_A 110 NSFVGNLSLFKDIEEKLQQ-GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICV 188 (367)
T ss_dssp GCEEECHHHHHHHHHHHHT-TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEEC
T ss_pred CCEeecchhhhhHHhhccC-CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeE
Confidence 445888 666765 79999999999999999887543 2 78999999999888775431 223455
Q ss_pred EE----e------cCCChhHHHHHHHHHHHHhC-CCeEEEEeCceecCC----CC--cccccHHHH----HHHHhCCCC-
Q 018977 233 PL----K------RMDSRSQLECLKRCMELIKK-GASVCFFPEGTRSKD----GK--LGAFKKGAF----SVAAKTGVP- 290 (348)
Q Consensus 233 ~v----~------R~~~~~~~~~l~~~~~~Lk~-g~~l~IFPEGt~~~~----~~--l~~fk~G~~----~lA~~~~~p- 290 (348)
+. + |.+.+...++++++.+.|++ |..|+|||||||+++ +. ..+|++|.+ ++|.++|+|
T Consensus 189 ~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~ 268 (367)
T 1iuq_A 189 YSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPG 268 (367)
T ss_dssp CCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCE
T ss_pred EecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCc
Confidence 54 3 54555677889999999998 569999999999985 44 456999999 999999999
Q ss_pred -EEEEEEecCCccCCCC--------CCCCCCCceEEEEEcCCCCCC-------C----HHHHHHHHHHHHHHHhhc
Q 018977 291 -VVPITLVGTGKIMPSG--------MEGMLNEGTIKVVIHKPIQGH-------D----AGELCNEARNSIADALGL 346 (348)
Q Consensus 291 -IiPV~i~g~~~~~~~~--------~~~~~~~~~i~V~ig~PI~~~-------d----~~e~~~~v~~~I~~~l~~ 346 (348)
|+|+++. +..+++.. ......++++.|.||+||+.+ + .+++++.+++.|++.+++
T Consensus 269 hIvPvaI~-t~~imppp~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y~~ 343 (367)
T 1iuq_A 269 HLFPLALL-CHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNV 343 (367)
T ss_dssp EEEEEEEE-CGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEE-eccccCCcccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 66777652 122345689999999999732 2 235777778888777654
No 2
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=38.07 E-value=9.2 Score=21.09 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.9
Q ss_pred CCCCCCCCCcccccc
Q 018977 30 CPYKGLGCSAYNQAV 44 (348)
Q Consensus 30 ~~~~~~~~~~~~~~~ 44 (348)
-+++|-||++.+.++
T Consensus 10 ytfrgpgcptlkpai 24 (29)
T 1ic9_A 10 YTFRGPGCPTLKPAI 24 (29)
T ss_dssp EEEECSCCCCCCTTC
T ss_pred eeecCCCCCccccee
Confidence 367899999988665
No 3
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=19.57 E-value=60 Score=18.00 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=10.9
Q ss_pred ccCCCCCCCCCCcccccc
Q 018977 27 SRLCPYKGLGCSAYNQAV 44 (348)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (348)
.|.....||||...+-|.
T Consensus 8 DRIgs~SglGC~~~r~p~ 25 (26)
T 1yk0_E 8 DRIGAQSGLGCNSFXXXX 25 (26)
T ss_dssp CCCSSSCCSCCCCC----
T ss_pred cccccccCCCCCCccccC
Confidence 456677899998877663
No 4
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=13.73 E-value=63 Score=17.68 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.8
Q ss_pred CcccccccCCC
Q 018977 21 STHSCLSRLCP 31 (348)
Q Consensus 21 ~~~~~~~~~~~ 31 (348)
-|-+|.||.|.
T Consensus 7 ~Pk~CksR~Ck 17 (26)
T 1r9i_A 7 FPKSCRSRQCK 17 (26)
T ss_dssp STTGGGSTTTT
T ss_pred CCCcccccccc
Confidence 46789999984
No 5
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=12.93 E-value=8e+02 Score=22.75 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=66.6
Q ss_pred CCCEEEEecCCCchhHHHHHHhCCceEEEEcccccccChhhHHHHhcCcEEEecCCChhHHHHHHHHHHHHhC-CC-eEE
Q 018977 183 DTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKK-GA-SVC 260 (348)
Q Consensus 183 ~~~~Iiv~NH~S~lD~~~l~~l~~~~~~v~k~~l~~~p~lg~~~~~~g~i~v~R~~~~~~~~~l~~~~~~Lk~-g~-~l~ 260 (348)
+.+..+++.=...-+.=.+..+..++.=++..++.+.|++..+.+....+.+.+.. ...+.+..+++.+.. |. .|+
T Consensus 112 ~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGm--aTl~Ei~~Ave~i~~~Gn~~ii 189 (385)
T 1vli_A 112 EKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAG--AEISDVHEAWRTIRAEGNNQIA 189 (385)
T ss_dssp HTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTT--CCHHHHHHHHHHHHTTTCCCEE
T ss_pred HcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCC--CCHHHHHHHHHHHHHCCCCcEE
Confidence 45666766544433333333444577778999999999999999888889999865 355667778887775 43 455
Q ss_pred EEeCceecCCCCcccc-cHHHHHHHHhC-CCCE
Q 018977 261 FFPEGTRSKDGKLGAF-KKGAFSVAAKT-GVPV 291 (348)
Q Consensus 261 IFPEGt~~~~~~l~~f-k~G~~~lA~~~-~~pI 291 (348)
+. +|+++.....-.. -..+-.|.... ++||
T Consensus 190 Ll-hc~s~YPtp~~~~nL~aI~~Lk~~f~~lpV 221 (385)
T 1vli_A 190 IM-HCVAKYPAPPEYSNLSVIPMLAAAFPEAVI 221 (385)
T ss_dssp EE-EECSSSSCCGGGCCTTHHHHHHHHSTTSEE
T ss_pred EE-eccCCCCCChhhcCHHHHHHHHHHcCCCCE
Confidence 54 5766643311111 12344456666 7765
No 6
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=12.34 E-value=94 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=24.2
Q ss_pred EEEcCCCC-CCCHHHHHHHHHHHHHHHhhc
Q 018977 318 VVIHKPIQ-GHDAGELCNEARNSIADALGL 346 (348)
Q Consensus 318 V~ig~PI~-~~d~~e~~~~v~~~I~~~l~~ 346 (348)
+.+|.||+ .+||.+.++++++.|.+.+++
T Consensus 184 iVVGR~I~~A~dP~~aa~~i~~~i~~~~~~ 213 (222)
T 4dbe_A 184 EIIGRSIYNAGNPLTALRTINKIIEDKVMK 213 (222)
T ss_dssp EEECHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 66799998 578999999999999887764
No 7
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=11.95 E-value=2.5e+02 Score=24.00 Aligned_cols=42 Identities=31% Similarity=0.282 Sum_probs=26.0
Q ss_pred HHHhCCCeEEEEeCceecCC-CC-------------cccccHHHHHHHHhCCCCEE
Q 018977 251 ELIKKGASVCFFPEGTRSKD-GK-------------LGAFKKGAFSVAAKTGVPVV 292 (348)
Q Consensus 251 ~~Lk~g~~l~IFPEGt~~~~-~~-------------l~~fk~G~~~lA~~~~~pIi 292 (348)
+..++|-.+++|||-..+.. .. -.+...-...+|++.++.|+
T Consensus 29 ~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv 84 (262)
T 3ivz_A 29 EASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIV 84 (262)
T ss_dssp HHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEE
T ss_pred HHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEE
Confidence 34457889999999654311 10 01344556678888888765
No 8
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=11.76 E-value=8.3e+02 Score=22.27 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=67.3
Q ss_pred CCCEEEEecCCCchhHHHHHHhCCceEEEEcccccccChhhHHHHhcCcEEEecCCChhHHHHHHHHHHHHhC-CCeEEE
Q 018977 183 DTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKK-GASVCF 261 (348)
Q Consensus 183 ~~~~Iiv~NH~S~lD~~~l~~l~~~~~~v~k~~l~~~p~lg~~~~~~g~i~v~R~~~~~~~~~l~~~~~~Lk~-g~~l~I 261 (348)
+.+..+++.=...-+.=.+..+..++.=++..++.+.|++..+.+....+.+.|.. ...+.+..+.+.+.. |..|++
T Consensus 102 ~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGm--at~~Ei~~Ave~i~~~G~~iiL 179 (349)
T 2wqp_A 102 SKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGM--NSIESIKKSVEIIREAGVPYAL 179 (349)
T ss_dssp HTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTT--CCHHHHHHHHHHHHHHTCCEEE
T ss_pred HhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCC--CCHHHHHHHHHHHHHcCCCEEE
Confidence 34666666544433333344454577778999999999999999888889999865 355666777777763 546666
Q ss_pred EeCceecCCCCcccc-cHHHHHHHHhC-CCCE
Q 018977 262 FPEGTRSKDGKLGAF-KKGAFSVAAKT-GVPV 291 (348)
Q Consensus 262 FPEGt~~~~~~l~~f-k~G~~~lA~~~-~~pI 291 (348)
. +|+++.....-.. -..+-.|...+ ++||
T Consensus 180 l-hc~s~Yp~~~~~~nL~ai~~lk~~f~~lpV 210 (349)
T 2wqp_A 180 L-HCTNIYPTPYEDVRLGGMNDLSEAFPDAII 210 (349)
T ss_dssp E-ECCCCSSCCGGGCCTHHHHHHHHHCTTSEE
T ss_pred E-eccCCCCCChhhcCHHHHHHHHHHCCCCCE
Confidence 5 6777654322111 12344555666 7765
No 9
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=11.57 E-value=2.7e+02 Score=24.18 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=25.6
Q ss_pred hCCCeEEEEeCceecCCC---------Cc-----ccccHHHHHHHHhCCCCEEE
Q 018977 254 KKGASVCFFPEGTRSKDG---------KL-----GAFKKGAFSVAAKTGVPVVP 293 (348)
Q Consensus 254 k~g~~l~IFPEGt~~~~~---------~l-----~~fk~G~~~lA~~~~~pIiP 293 (348)
++|-.+++|||...+... .+ .++......+|++.++.|+.
T Consensus 43 ~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 96 (291)
T 1f89_A 43 QPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVG 96 (291)
T ss_dssp CTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEEC
T ss_pred cCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEe
Confidence 467789999996552210 01 23445666788888888763
No 10
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=11.48 E-value=2.6e+02 Score=24.11 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHHhCCCeEEEEeCceecCC--CCc--------ccccHHHHHHHHhCCCCEE
Q 018977 251 ELIKKGASVCFFPEGTRSKD--GKL--------GAFKKGAFSVAAKTGVPVV 292 (348)
Q Consensus 251 ~~Lk~g~~l~IFPEGt~~~~--~~l--------~~fk~G~~~lA~~~~~pIi 292 (348)
+..++|-.+++|||...+.. ..+ .+.......+|++.++.|+
T Consensus 30 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 81 (276)
T 2w1v_A 30 EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLI 81 (276)
T ss_dssp HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEE
Confidence 34457888999999654311 111 1344556678888888776
Done!