RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018977
(348 letters)
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 419 bits (1080), Expect = e-149
Identities = 170/214 (79%), Positives = 184/214 (85%)
Query: 135 MLVGHPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQS 194
MLV HPFVLL DRYRRK HFI K+WATL+ SPF K+E+EGLENLPS D PAVYVSNHQS
Sbjct: 1 MLVQHPFVLLFDRYRRKAQHFINKVWATLSTSPFYKIEVEGLENLPSPDEPAVYVSNHQS 60
Query: 195 FLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIK 254
FLDIYTL LG+ FKFISKT IFL P+IGWAM M G IPLKRMD RSQLECLKRCMEL+K
Sbjct: 61 FLDIYTLFHLGRPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQLECLKRCMELLK 120
Query: 255 KGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEG 314
KGASV FFPEGTRSKDGKL AFKKGAFSVAAKTGVPVVPITLVGTGKIMP+G EG+LN G
Sbjct: 121 KGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVPVVPITLVGTGKIMPNGKEGILNPG 180
Query: 315 TIKVVIHKPIQGHDAGELCNEARNSIADALGLQS 348
++KVVIH PI+G DA ELCNEAR IA++L S
Sbjct: 181 SVKVVIHPPIEGSDADELCNEARKVIAESLVQNS 214
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 184 bits (470), Expect = 1e-57
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 7/189 (3%)
Query: 157 AKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLT-LGKSFKFISKTG 215
+L L +++ +EGLENLP P + V+NHQS+LD L L + +F++K
Sbjct: 1 LRLLLRLL---GVRVRVEGLENLPP-KGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKE 56
Query: 216 IFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGA 275
+F P +GW + ++G IP+ R + RS E L+ +E +K+G SV FPEGTRS+DG+L
Sbjct: 57 LFKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDGELLP 116
Query: 276 FKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPIQGHDAGELCNE 335
FK GAF +A + GVP+VP+ + GT +P G + + G + V I +PI + EL E
Sbjct: 117 FKSGAFRLAKEAGVPIVPVAISGTWGSLPKG-KKLPRPGRVTVRIGEPIP-PEGLELAEE 174
Query: 336 ARNSIADAL 344
R + + +
Sbjct: 175 DRKELREKV 183
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 135 bits (340), Expect = 1e-37
Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 13/208 (6%)
Query: 123 VTAVVAIFLIVLMLVGHPFVLLLDR--YRRKFHHFIAKLWATLTVSPFLKLEIEGLENLP 180
A++ I +I+ +L+ P L+ R ++ L L + L++E+EGLENLP
Sbjct: 2 RLALLLILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENLP 61
Query: 181 SSDTPAVYVSNHQSFLDIYTL---LTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRM 237
PA+ V+NHQSFLD L L +F++K +F P++GW + ++G IP+ R
Sbjct: 62 K-GGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDR- 119
Query: 238 DSRSQLECLKRCMELIKKGASVCFFPEGTRSKDG-KLGAFKKGAFSVAAKTGVPVVPITL 296
++ L G S+ FPEGTRS+ G +L FK+GA +A + GVP+VP+ +
Sbjct: 120 ENPDDETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAI 179
Query: 297 VGTGKIMPSGMEGMLNEGTIKVVIHKPI 324
VG ++ PS +G +KV I PI
Sbjct: 180 VGAEELFPSLK-----KGKVKVRIGPPI 202
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 125 bits (316), Expect = 1e-35
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 186 AVYVSNHQSFLDIYTLLTL----GKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRS 241
A+ V+NHQSFLD L L +F++K +F P++GW + ++G I + R + R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 242 QLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVGT 299
L+ +EL+K+G + FPEGTRS+ GKL FKKGA +A + GVP+VP+ + GT
Sbjct: 61 ARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRGT 118
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 124 bits (313), Expect = 4e-35
Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 170 KLEIEGLENLPSSDTPAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFLFPVIGWA 225
++ + GLENLP PA+ V+NHQS+LD L G+ F++K + P++GW
Sbjct: 1 RVRVHGLENLPRGG-PAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWL 59
Query: 226 MSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAA 285
M ++G I + R +++ L+ +EL+++G V FPEGTRS+ G+L FKKGAF +A
Sbjct: 60 MRLLGCIFIDRKNAKDAANTLEYLVELLREGELVLIFPEGTRSRGGELLPFKKGAFRLAR 119
Query: 286 KTGVPVVPITLV 297
+ GVP+VP+ +
Sbjct: 120 EAGVPIVPVAIS 131
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 121 bits (306), Expect = 5e-34
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 169 LKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLL-TLGKSFKFISKTGIFLFPVIGWAMS 227
LK+E+ G ENLP+ +P + V+NHQS LD TL FI+K + P G +
Sbjct: 2 LKVEVVGPENLPA-KSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLW 60
Query: 228 MMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKT 287
+ G I + R + R+ LK +E++K+G S+ FPEGTRS+ + FKKGAF +A K
Sbjct: 61 LTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKA 120
Query: 288 GVPVVPITLV 297
GVP++P+ L
Sbjct: 121 GVPILPVVLS 130
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 97.7 bits (244), Expect = 3e-22
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 124 TAVVAIFLIVLMLVGHPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSD 183
A + + ++ L+G + L + + L + +L +EG EN+P+
Sbjct: 388 PAGLFYLIALVTLIGTLYTL------LLLPDSLLRFLLLLLMHTRYRLRVEGRENIPA-K 440
Query: 184 TPAVYVSNHQSFLD-IYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQ 242
A+ + NH S++D + +F+ + I+ + W + GVIP+ S+
Sbjct: 441 GGALLLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVIPISSGGSKES 500
Query: 243 LECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAK-TGVPVVPITLVG 298
LE ++ + + G VC FPEG +++G+L FK+G F + K T VP++P + G
Sbjct: 501 LEFIR---KALDDGEVVCIFPEGAITRNGQLNEFKRG-FELIVKGTDVPIIPFYIRG 553
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 83.5 bits (207), Expect = 6e-19
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQ-SFLDIYTL-LTLGKSFKFISKTGIFLFPVIGWA 225
F ++ + G EN+P D P +++ NH + +D L TL + +F++K +F P+IGW
Sbjct: 13 FRRITVVGRENVPK-DGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGWL 71
Query: 226 MSMMGVIPLKRM-DSR-------SQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFK 277
+ G IP+ R D S E +K G ++ FPEG +L K
Sbjct: 72 LESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSHDRPRLLPLK 131
Query: 278 KGA------FSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPIQ 325
GA A + V +VP+ L K + V KPI
Sbjct: 132 AGAARMALEALEAGQKDVKIVPVGLNYEDKSRF--------RSRVLVEFGKPIS 177
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 77.3 bits (191), Expect = 1e-16
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 163 LTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVI 222
L F +++ G + P + P + V+NH SF+D +L ++K + P I
Sbjct: 5 LFAFGFYVIKVHGKPDPP--EAPRIIVANHTSFIDPL-ILFSDLFPSIVAKKELGKLPFI 61
Query: 223 GWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGAS------VCFFPEGTRSKDGKLGAF 276
G + +G I + R + + + + ++ IK+ A+ + FPEGT + L F
Sbjct: 62 GTILRALGCIFVDRSEPKDRKKVVEE----IKERATDPNWPPILIFPEGTTTNGKALIMF 117
Query: 277 KKGAFSVAAKTGVPVVPITL 296
KKGAF GVPV P+ +
Sbjct: 118 KKGAFE----PGVPVQPVAI 133
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 73.6 bits (181), Expect = 2e-15
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTL-LTLGKSFKF-----ISKTGIFLFPV 221
F++LE++G P P ++VSNH S+ D L L L + + + + + +P
Sbjct: 11 FVRLEVKGPPPPPG-GGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLERYPF 69
Query: 222 IGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKK-GASVCFFPEGTRSK-DGKLGAFKKG 279
+G + R RS + LK L+ K G+ V FPEGTR++ D + FK G
Sbjct: 70 FTR----LGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQFKPG 125
Query: 280 AFSVAAKTGVPVVPITL 296
+A K GVP+VP+ L
Sbjct: 126 VAHLAEKAGVPIVPVAL 142
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 69.6 bits (171), Expect = 6e-13
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLT-LGKSFKFISKTGI--------FL 218
F ++E++GLENL + AV +NH SFLD L L + F T I FL
Sbjct: 438 FYRVEVKGLENLQKAGKKAVIAANHVSFLDGPLLAAYLPEEPTFAIDTDIAKAWWVKPFL 497
Query: 219 FPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKK 278
+ V P M +R+ ++ ++KG + FPEG + G L
Sbjct: 498 -----KLAKALPVDPTNPMATRT-------LIKEVQKGEKLVIFPEGRITVTGSLMKIYD 545
Query: 279 GAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEG---TIKVVIHKPIQGHDAGELCNE 335
G +A K G VVP+ + G S ++ + + V I P++ EL
Sbjct: 546 GPGMIADKAGAMVVPVRIDGLQFTHFSRLKNQVRRKWFPKVTVTILPPVKLAVDPELKGR 605
Query: 336 ARNSIADA 343
R S A A
Sbjct: 606 ERRSAAGA 613
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 64.2 bits (157), Expect = 3e-12
Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 33/184 (17%)
Query: 169 LKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSF------KFISKTGIFLFPVI 222
+K+ + G + A+ +SNH+S +D L L F K + K + P+
Sbjct: 10 VKVVVYG-DEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLG 68
Query: 223 GWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGA---SVCFFPEGTR---SKDGKLGAF 276
GW + I LKR + +KR ++ +K + FPEGTR K + F
Sbjct: 69 GWGWQLGEFIFLKR-KWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEKKERSQEF 127
Query: 277 KK---------------GAFSVA----AKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIK 317
+ F V +T+ PS +L +
Sbjct: 128 AEKNGLPPLKHVLLPRTKGFVAILETLRDAVDAVYDVTIAYPDGKPPSEQRLLLGGKPRE 187
Query: 318 VVIH 321
V +H
Sbjct: 188 VHVH 191
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 60.4 bits (147), Expect = 1e-10
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKF-----ISKTGIFLFPVI 222
F E+ GLEN+P + PA+ V H LL F + FLFP+
Sbjct: 5 FRVYEVRGLENIPD-EGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLFPLP 63
Query: 223 GWAM--SMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTR----SKDGKLGA- 275
G +G +P R + C+ L+++G V FP G R SK +
Sbjct: 64 GLRDLLRRLGAVPGSREN----------CVRLLREGELVLIFPGGAREALKSKREEYYLL 113
Query: 276 --FKKGAFSVAAKTGVPVVPITLVG 298
+KG +A + G P+VP+ G
Sbjct: 114 WKKRKGFARLALRAGAPIVPVFTFG 138
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 56.1 bits (136), Expect = 1e-09
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 192 HQSFLD-IYTLLT---LGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLK 247
H S D + LL LG F+ K +F P+ G M +G IP+ R + +E +
Sbjct: 29 HTSNWDFVLGLLAAFALGLKISFLGKHSLFKPPL-GPFMRWLGGIPVDRSRAGGLVEQVV 87
Query: 248 RCMELIKKGA--SVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITL------VGT 299
E ++ + PEGTRSK K +K G + +A GVP++ + L VG
Sbjct: 88 ---EEFRRREEFVLAIAPEGTRSKVDK---WKTGFYHIARGAGVPILLVYLDYKRKTVGI 141
Query: 300 G-KIMPSG 306
G PSG
Sbjct: 142 GPLFEPSG 149
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 56.6 bits (136), Expect = 3e-09
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
Query: 126 VVAIFLIVLMLVGHPFVLLLDRYRR---KFHHFIAKLWATLTVSPFLKLEIEGLENLPS- 181
+ I+ I++ + G + L R + F H +L +P L++E + +
Sbjct: 9 ITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRL------APLFGLKVECRKPADAE 62
Query: 182 SDTPAVYVSNHQSFLDIYTLLTLGKSFKF-ISKTGIFLFPVIGWAMSMMGVIPLKRMDSR 240
S A+Y++NHQ+ D+ T + + + K + P G + G + + R +
Sbjct: 63 SYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNNRT 122
Query: 241 SQLECLKRCMELIKKG-ASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVGT 299
+ + KK S+ FPEGTRS+ L FK GAF A GVP++P+ + T
Sbjct: 123 KAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSTT 182
Query: 300 GKIMPSGMEGMLNEGTIKVVIHKPI 324
+ L+ G + V + PI
Sbjct: 183 SNKINL---NRLHNGLVIVEMLPPI 204
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 54.9 bits (133), Expect = 6e-09
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 170 KLEIEGLENLPSSDTPAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFLFPVIGWA 225
+ ++E L P V + H+S+LD + L +LG I+ P++G
Sbjct: 8 EGQLERLRKAAQEGHPVVLLPTHRSYLDFLLLSFILFSLGLPLPHIAAGENLNIPILGTL 67
Query: 226 MSMMGVIPLKRMDSRSQL--ECLKRCM-ELIKKGASVCFFPEGTRSKDGKLGAFKKGAFS 282
+ +G ++R + L L+ + EL+K G + FF EGTRS+ GKL K G S
Sbjct: 68 LRRLGAFFIRRSFGKDPLYRAVLQEYVQELLKNGQPLEFFIEGTRSRTGKLLPPKLGLLS 127
Query: 283 VA----AKTGVP---VVPITL 296
V K VP +VP+++
Sbjct: 128 VVVEAYLKGSVPDVLIVPVSI 148
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 54.9 bits (133), Expect = 2e-08
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 110 KLGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVLLL--DRYRR---KFHHFIAKLWAT-- 162
L + +RG+ + + +F V +++ LLL RR + +FIA+ W +
Sbjct: 4 FLLAPLRGLLSILLLILNTLFWSVPIIILGLLKLLLPIPAIRRACSRLLNFIAEAWISIN 63
Query: 163 ---LTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKS----FKFISKTG 215
L + P + ++EGLE L S + +SNHQS++DI L + KF K
Sbjct: 64 NVILRLLPRTQWDVEGLEGL-SKKGWYLVISNHQSWVDILVLQYVFNRRIPMLKFFLKQE 122
Query: 216 IFLFPVIG---WAMSMMGVIPLKRMDSRSQLE------------CLKRCMELIKKGASVC 260
+ P +G WA+ P + S++ L + C + + ++
Sbjct: 123 LIWVPFLGLAWWALDF----PFMKRYSKAYLAKNPELKGKDLETTRRACEKFKRMPTTIV 178
Query: 261 FFPEGTR 267
F EGTR
Sbjct: 179 NFVEGTR 185
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 51.9 bits (125), Expect = 8e-08
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 169 LKLEIEGLENLPSSDTPAVYVSNHQ-SFLD----IYTLLTLGKSFKFISKTGIFLFPVIG 223
L++++ GLEN+P D P V V+NH LD L ++ + ++ + P +
Sbjct: 8 LEVDVSGLENIPK-DGPVVIVANHPFGILDGLILADLLGSVRPDVRILANQLLSKIPEL- 65
Query: 224 WAMSMMGVIPLKRMDSRSQ-LECLKRCMELIKKGASVCFFPEGT--RSKDGKLGAF---- 276
+ V PL+ + ++ E L+ + +K G ++ FP G +
Sbjct: 66 -RDLFIPVDPLEGRAALAKNRESLREALRHLKNGGALIIFPAGRVSTASPPFGRVSDRPW 124
Query: 277 KKGAFSVAAKTGVPVVPI 294
+A K PVVP+
Sbjct: 125 NPFVARLARKAKAPVVPV 142
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 42.4 bits (100), Expect = 3e-04
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 191 NHQSFLDIYTLLTLGKSFK--FISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKR 248
NH SFLD LL L + F T I + W + +PL D + +K
Sbjct: 35 NHVSFLD-GILLALFLPVRPVFAVYTSISQQWYMRWLKPYIDFVPL---DPTKPM-AIKH 89
Query: 249 CMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVG 298
+ L+++G V FPEG + G L GA VAAK+G V+P+ + G
Sbjct: 90 LVRLVEQGRPVVIFPEGRITVTGSLMKIYDGAGFVAAKSGATVIPVRIEG 139
>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are the uncharacterized DUF374
phospholipid/glycerol acyltransferases and similar
proteins.
Length = 189
Score = 40.3 bits (95), Expect = 4e-04
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 169 LKLEIEGLEN---LPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFI-----SKTGIFLFP 220
L+ + G E+ L + P + H L + + SK G +
Sbjct: 8 LRWRVIGDESADALIAQGEPVILAFWHGRLL--LMPYLFRRRKRIAALISRSKDGEIIAR 65
Query: 221 VIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGA 280
V + +G+ ++ SR L+ + +K G ++ P+G R G K G
Sbjct: 66 V----LERLGIRVVRGSSSRGGAAALREMLRALKDGYNIAITPDGPR---GPRYKVKPGV 118
Query: 281 FSVAAKTGVPVVPIT 295
+A K+G P+VP+
Sbjct: 119 ILLARKSGAPIVPVA 133
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 41.3 bits (97), Expect = 5e-04
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 180 PSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGW-------AMSMMGVI 232
PS V+V+NH S +D + +L F I + P GW + +G I
Sbjct: 159 PSRRPKQVFVANHTSMID-FIVLEQMTPFAVIMQ----KHP--GWVGFLQNTILESVGCI 211
Query: 233 PLKRMDSRSQLECLKRCMELIKKGAS--VCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVP 290
R +++ + K+ + ++ + FPEGT + FKKGAF + G
Sbjct: 212 WFNRTEAKDREVVAKKLRDHVQDPDRNPLLIFPEGTCVNNEYTVMFKKGAFEL----GCT 267
Query: 291 VVPI 294
V PI
Sbjct: 268 VCPI 271
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 41.0 bits (96), Expect = 5e-04
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 182 SDTPAVYVSNHQSFLDIYTLLTLGKSFKFIS-----KTGIFLFPVIGWAMSMMGVIPLK- 235
S YV NH SF D+Y + L ++ K+ + P+ G +G P+
Sbjct: 127 SRHGCAYVGNHTSFWDVYAFIGLTPFRHLLNTRTLMKSSLRKIPIFGGVFDRVGHFPVHF 186
Query: 236 --------RMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGK-LGAFKKGAFSVAAK 286
+D Q + + ++ G S+ FFPEG +K + L F+ G F+ K
Sbjct: 187 KSDSDGNFEVDKEKQAQVQQAIDAHLRLGGSLAFFPEGAINKHPQVLQTFRYGTFATIIK 246
Query: 287 TGVPVVPITLVGTGKIMPSGM 307
+ V + VG+ K P M
Sbjct: 247 HRMEVYYMVSVGSEKTWPWWM 267
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 40.5 bits (95), Expect = 0.001
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 38/210 (18%)
Query: 104 YPLSELKLGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVLLLDR-----YRRKFHHFIAK 158
PL+ L+ +RG+ V A ++V + P +L R Y RK F
Sbjct: 10 RPLTPLRR---LRGLICLLVLLSTAFMMLVYL---APVSAVLLRLFSVHYSRKATSFFFG 63
Query: 159 LWATLTVSPFLKLEIEGLENLPSSDT-PA----VYVSNHQSFLDIYTL--LTLGKS---- 207
W L + PFL +I + + S D P + ++NH++ +D L L L K
Sbjct: 64 SW--LALWPFLFEKINKTKVVFSGDKVPPEERVLLIANHRTEVDWMYLWDLALRKGCLGY 121
Query: 208 FKFISKTGIFLFPVIGWAMSMMGVIPLKR---MDS---RSQLECLKRCMELIKKGASVCF 261
K++ K+ + PV GWA + IP++R +D R L K + + +
Sbjct: 122 IKYVLKSSLMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDPRDPL----WLAL 177
Query: 262 FPEGTRSKDGKLGAFKKGAFSVAAKTGVPV 291
FPEGT + K +K AA+ G+P+
Sbjct: 178 FPEGTDYTEAKCQRSQK----FAAEHGLPI 203
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 38.5 bits (90), Expect = 0.005
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 185 PAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFL-FPVIGWAMSMMGVIPLKRMDS 239
VYV H+S +D Y L G I+ GI L F +G G ++R
Sbjct: 297 EIVYVPCHRSHIDYLLLSYVLYHNGLVPPHIA-AGINLNFWPMGPIFRRGGAFFIRRTFK 355
Query: 240 RSQL------ECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGV--PV 291
+ L E L EL +G S+ +F EG RS+ G+L K G S+ + +
Sbjct: 356 GNPLYSTVFREYLG---ELFSRGYSLEYFIEGGRSRTGRLLPPKTGMLSMTLQAMLRGRT 412
Query: 292 VPITLVGT 299
PI LV
Sbjct: 413 RPILLVPV 420
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 37.0 bits (86), Expect = 0.011
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 40/157 (25%)
Query: 155 FIAKLWATLTV---SPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIY------------ 199
++ WA + V + E+ G E+ A+ +SNH+S +D
Sbjct: 59 WLVDWWAGVKVQLYADEETFELMGKEH-------ALVISNHRSDIDWLVGWILAQRSGCL 111
Query: 200 --TLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGA 257
L + KS KF+ PVIGW+M + L+R ++ + LK + +K
Sbjct: 112 GSALAVMKKSSKFL--------PVIGWSMWFSEYVFLERSWAKDE-NTLKSGFQRLKDFP 162
Query: 258 S---VCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPV 291
+ F EGTR KL A A AA G+PV
Sbjct: 163 RPFWLALFVEGTRFTQAKLLA----AQEYAASRGLPV 195
>gnl|CDD|153246 cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LABLAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as lipid A
biosynthesis lauroyl/myristoyl (LABLAT, HtrB)
acyltransferases and similar proteins.
Length = 192
Score = 33.3 bits (77), Expect = 0.088
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 47/177 (26%)
Query: 170 KLEIEGLENLP---SSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLF-----PV 221
++E EGLE+L + + ++ H ++ G + + ++ P+
Sbjct: 3 RVEREGLEHLEAALAKGKGVILLTAHFGNWEL-----AGLALALLGYPVTVVYRPLKNPL 57
Query: 222 IGWAMSMMGVIPLKRMDSRSQLEC------LKRCMELIKKGASVCFFP-EGTRSKD---- 270
+ + R R L+ + +KKG V P + K
Sbjct: 58 LDRLI--------TRGRERFGARLIPRGGGLRELIRALKKGEIVGILPDQDPGRKGGVFV 109
Query: 271 ---GKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPI 324
G+ A G +A KTG PVVP L G ++ P+
Sbjct: 110 PFFGRPAATPTGPARLALKTGAPVVPAFAY------------RLPGGGYRIEFEPPL 154
>gnl|CDD|234317 TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase. Members
of this protein family are PlsB, glycerol-3-phosphate
O-acyltransferase, present in E. coli and numerous
related species. In many bacteria, PlsB is not found,
and appears to be replaced by a two enzyme system for
1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y
system [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 799
Score = 31.8 bits (73), Expect = 0.64
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 251 ELIKKGASVCFFPEGTRSKDGKLGAFKKG--AFSVAAKTGVPVVPITLV 297
EL KG SV +F EG RS+ G+L K G A ++ A PITLV
Sbjct: 366 ELFAKGYSVEYFVEGGRSRTGRLLPPKTGMLAMTLQAMLRGIRRPITLV 414
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 30.2 bits (69), Expect = 1.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 20/58 (34%)
Query: 251 ELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGV-----------PVVPITLV 297
EL +G SV +F EG RS+ G+L + KTG+ PITLV
Sbjct: 376 ELFARGYSVEYFVEGGRSRTGRL---------LQPKTGMLAMTLQAMLRGSRRPITLV 424
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 29.9 bits (68), Expect = 2.2
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 117 GICFYAVTA-VVAIFLIVLMLVGHPFVLLLDRYRRK 151
I A+ A +VAI +IVL++V + L+ RYRRK
Sbjct: 311 TILQTAIIASIVAIVVIVLIMV---IIYLILRYRRK 343
>gnl|CDD|233430 TIGR01477, RIFIN, variant surface antigen, rifin family. This
model represents the rifin branch of the rifin/stevor
family (pfam02009) of predicted variant surface antigens
as found in Plasmodium falciparum. This model is based
on a set of rifin sequences kindly provided by Matt
Berriman from the Sanger Center. This is a global model
and assesses a penalty for incomplete sequence.
Additional fragmentary sequences may be found with the
fragment model and a cutoff of 20 bits.
Length = 353
Score = 29.7 bits (67), Expect = 2.3
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 126 VVAIFLIVLMLVGHPFVLLLDRYRRK 151
++AI +IVL++V + L+ RYRRK
Sbjct: 316 IIAILIIVLIMV---IIYLILRYRRK 338
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 28.5 bits (64), Expect = 5.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 126 VVAIFLIVLMLVGHPFVLLLDRYRRK 151
+AI +IVL+++ + L+ RYRRK
Sbjct: 253 AIAILIIVLVML---IIYLILRYRRK 275
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 28.1 bits (64), Expect = 5.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 270 DGKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMP 304
K GA A S+AA+TG +PI +GTG+ +P
Sbjct: 154 TAKGGA----ALSIAAETG---LPIKFIGTGEKVP 181
>gnl|CDD|225032 COG2121, COG2121, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 214
Score = 28.1 bits (63), Expect = 5.7
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 253 IKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPI 294
+K+G S+ P+G + G + G ++A K+GVP++P+
Sbjct: 114 LKQGKSIAITPDGPK---GPVHKIGDGIIALAQKSGVPIIPV 152
>gnl|CDD|217527 pfam03387, Herpes_UL46, Herpesvirus UL46 protein.
Length = 443
Score = 28.1 bits (63), Expect = 7.0
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
Query: 122 AVTAVVAI---------FLIVLMLVGHPFVL---LLDRYRRK-------FHHFIAKLWAT 162
A+ A V + +L+ + L G+ L L + Y R F HF+ KL+ T
Sbjct: 303 AIVAAVELVTLVHHHCQYLLNMTLAGYVCWLDGGLNNPYLRAALRSQGRFCHFLGKLFPT 362
Query: 163 LTVSPFLKLE 172
++ + ++E
Sbjct: 363 MSSHSWAEME 372
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 28.3 bits (64), Expect = 7.5
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 284 AAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKP--------IQGHDAGELCNE 335
A + G+ + +G +K+V+ K I G A EL NE
Sbjct: 365 AKEAGIDYKVGKFPFAA--NGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINE 422
Query: 336 A 336
Sbjct: 423 I 423
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 27.3 bits (61), Expect = 9.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 69 PNFDLKLNRRCYDIKFSRNVVVRSQLAG 96
P D +++RR ++ NVV+ +LAG
Sbjct: 57 PEIDKEIDRRQKELAKEGNVVLEGRLAG 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,518,769
Number of extensions: 1692303
Number of successful extensions: 2366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2315
Number of HSP's successfully gapped: 64
Length of query: 348
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 250
Effective length of database: 6,590,910
Effective search space: 1647727500
Effective search space used: 1647727500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.2 bits)