RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018977
         (348 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 89.3 bits (221), Expect = 1e-20
 Identities = 47/290 (16%), Positives = 89/290 (30%), Gaps = 61/290 (21%)

Query: 111 LGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVL----LLDRYRRKFHHFIAKLWATL--- 163
           + S         ++ +      +L+ V  PFV        R    ++ F       L   
Sbjct: 49  IESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDF 108

Query: 164 ------TVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLD---IYTLLT-----LGKSFK 209
                  +S F  +E    E L       V +SNHQ+  D   I  LL      + ++  
Sbjct: 109 GNSFVGNLSLFKDIE----EKLQQGH-NVVLISNHQTEADPAIISLLLEKTNPYIAENTI 163

Query: 210 FISKTGIFLFPVIGWAMSMMGVIP------------LKRMDSRSQLECLKRCMELIKKG- 256
           F++   +   P+         +I             L     ++    LK    L++ G 
Sbjct: 164 FVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGS 223

Query: 257 ASVCFFPEGTRS----KDGKL--GAFKKGA----FSVAAKTGVP--VVPITLVGTGKIMP 304
             +   P G R       G+     F   +      +   + VP  + P+ L+    + P
Sbjct: 224 QLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPP 283

Query: 305 S-------GMEGMLNEGTIKVVIHKPIQGHD---AGELCNEARNSIADAL 344
                   G + ++      + +   I   +     +   E R + + AL
Sbjct: 284 PSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKAL 333


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,268,946
Number of extensions: 58528
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.9 bits)