Query 018978
Match_columns 348
No_of_seqs 128 out of 1133
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 5E-106 1E-110 774.9 27.5 295 8-347 2-303 (348)
2 PRK08997 isocitrate dehydrogen 100.0 2E-100 3E-105 744.3 31.1 289 8-347 1-292 (334)
3 PRK08299 isocitrate dehydrogen 100.0 9E-100 2E-104 751.3 33.4 343 3-347 1-343 (402)
4 PLN03065 isocitrate dehydrogen 100.0 1.1E-99 2E-104 760.3 34.1 345 3-348 71-415 (483)
5 PLN00118 isocitrate dehydrogen 100.0 7E-100 2E-104 747.1 30.4 294 2-347 34-330 (372)
6 PRK03437 3-isopropylmalate deh 100.0 2.4E-99 5E-104 739.2 30.5 294 10-347 5-308 (344)
7 PRK14025 multifunctional 3-iso 100.0 4.9E-99 1E-103 732.9 30.0 281 10-347 2-289 (330)
8 PRK08194 tartrate dehydrogenas 100.0 4.9E-99 1E-103 738.9 29.7 294 10-347 4-308 (352)
9 PLN02329 3-isopropylmalate deh 100.0 7.4E-99 2E-103 746.0 28.6 298 8-347 45-356 (409)
10 TIGR02089 TTC tartrate dehydro 100.0 2.4E-98 5E-103 734.6 29.7 295 10-347 4-311 (352)
11 TIGR00169 leuB 3-isopropylmala 100.0 3.6E-97 8E-102 725.5 29.9 294 11-347 1-308 (349)
12 TIGR00127 nadp_idh_euk isocitr 100.0 9.6E-97 2E-101 730.2 32.4 343 4-347 1-344 (409)
13 PRK09222 isocitrate dehydrogen 100.0 4.2E-97 9E-102 745.2 30.3 287 8-347 3-294 (482)
14 PTZ00435 isocitrate dehydrogen 100.0 1.6E-96 4E-101 729.3 32.8 344 2-347 2-346 (413)
15 TIGR02924 ICDH_alpha isocitrat 100.0 1.2E-96 3E-101 739.7 29.9 284 11-347 2-290 (473)
16 PRK06451 isocitrate dehydrogen 100.0 1.3E-96 3E-101 732.8 29.5 308 12-347 26-362 (412)
17 PRK07006 isocitrate dehydrogen 100.0 3.2E-96 7E-101 730.6 31.4 311 12-347 22-362 (409)
18 PRK00772 3-isopropylmalate deh 100.0 1.9E-96 4E-101 722.1 29.0 297 8-347 1-311 (358)
19 PLN00123 isocitrate dehydrogen 100.0 4.4E-96 1E-100 716.9 30.4 280 10-347 31-317 (360)
20 TIGR00175 mito_nad_idh isocitr 100.0 1.6E-95 4E-100 710.8 30.4 284 10-347 4-291 (333)
21 TIGR00183 prok_nadp_idh isocit 100.0 2E-95 4E-100 727.4 30.7 311 12-347 29-369 (416)
22 TIGR02088 LEU3_arch isopropylm 100.0 5.3E-95 1.2E-99 703.6 29.5 281 12-347 1-284 (322)
23 PLN00103 isocitrate dehydrogen 100.0 8E-95 1.7E-99 717.4 31.1 319 1-346 1-346 (410)
24 PRK07362 isocitrate dehydrogen 100.0 3.5E-94 7.5E-99 715.3 28.6 312 12-347 31-426 (474)
25 KOG0785 Isocitrate dehydrogena 100.0 1.7E-93 3.6E-98 673.8 21.6 284 10-347 36-323 (365)
26 PF00180 Iso_dh: Isocitrate/is 100.0 1.7E-92 3.6E-97 695.2 19.5 292 11-347 1-307 (348)
27 PLN00096 isocitrate dehydrogen 100.0 7.7E-86 1.7E-90 645.9 28.3 329 13-347 2-342 (393)
28 COG0538 Icd Isocitrate dehydro 100.0 2.4E-81 5.2E-86 606.1 27.2 316 12-348 21-359 (407)
29 KOG0784 Isocitrate dehydrogena 100.0 6E-79 1.3E-83 581.3 21.9 285 8-347 41-330 (375)
30 KOG0786 3-isopropylmalate dehy 100.0 2.2E-73 4.7E-78 526.1 17.9 285 9-344 4-313 (363)
31 KOG1526 NADP-dependent isocitr 100.0 1.7E-65 3.7E-70 483.1 22.0 347 1-348 10-356 (422)
32 PF04166 PdxA: Pyridoxal phosp 95.0 0.017 3.8E-07 56.4 3.0 139 184-341 150-297 (298)
33 PRK03371 pdxA 4-hydroxythreoni 94.4 0.03 6.4E-07 55.4 2.9 139 184-343 176-324 (326)
34 PRK00232 pdxA 4-hydroxythreoni 94.3 0.031 6.7E-07 55.5 2.8 140 184-344 177-326 (332)
35 PRK03946 pdxA 4-hydroxythreoni 94.3 0.033 7.1E-07 54.7 2.9 139 184-344 157-303 (307)
36 PRK03743 pdxA 4-hydroxythreoni 94.2 0.032 7E-07 55.4 2.7 140 184-344 177-326 (332)
37 COG1995 PdxA Pyridoxal phospha 94.1 0.033 7.2E-07 54.9 2.5 56 281-343 268-324 (332)
38 PRK01909 pdxA 4-hydroxythreoni 94.1 0.035 7.6E-07 55.0 2.7 139 184-343 172-321 (329)
39 PRK05312 pdxA 4-hydroxythreoni 94.0 0.038 8.2E-07 54.9 2.7 140 184-344 181-331 (336)
40 PRK02746 pdxA 4-hydroxythreoni 93.9 0.039 8.5E-07 55.0 2.7 143 184-343 179-338 (345)
41 TIGR00557 pdxA 4-hydroxythreon 93.8 0.043 9.3E-07 54.2 2.8 139 184-343 169-318 (320)
42 PF03971 IDH: Monomeric isocit 93.0 0.65 1.4E-05 49.2 9.8 155 180-347 451-615 (735)
43 TIGR00127 nadp_idh_euk isocitr 91.9 0.088 1.9E-06 53.6 1.9 21 127-147 140-161 (409)
44 TIGR00178 monomer_idh isocitra 90.7 1.7 3.7E-05 46.2 9.9 148 187-347 462-619 (741)
45 COG2838 Icd Monomeric isocitra 80.6 9.9 0.00021 39.9 9.1 156 180-347 457-621 (744)
46 PTZ00435 isocitrate dehydrogen 58.0 5.8 0.00013 40.7 1.7 18 127-144 143-161 (413)
47 PRK03371 pdxA 4-hydroxythreoni 48.7 14 0.00031 36.8 2.7 22 8-29 1-24 (326)
48 KOG1671 Ubiquinol cytochrome c 43.7 13 0.00029 34.5 1.5 45 260-327 140-186 (210)
49 COG0655 WrbA Multimeric flavod 37.1 1.9E+02 0.0042 26.1 8.2 83 11-107 5-100 (207)
50 PF00582 Usp: Universal stress 35.1 43 0.00093 26.4 3.2 27 187-213 11-37 (140)
51 PRK05312 pdxA 4-hydroxythreoni 33.5 34 0.00074 34.2 2.7 22 8-29 2-25 (336)
52 PRK02746 pdxA 4-hydroxythreoni 33.1 42 0.00091 33.7 3.3 23 7-29 7-31 (345)
53 PRK00232 pdxA 4-hydroxythreoni 32.6 37 0.00081 33.9 2.8 22 8-29 3-26 (332)
54 cd01988 Na_H_Antiporter_C The 30.9 81 0.0017 25.2 4.2 28 189-216 10-37 (132)
55 PRK03743 pdxA 4-hydroxythreoni 30.3 41 0.00089 33.6 2.7 20 10-29 4-25 (332)
56 PRK15005 universal stress prot 27.2 84 0.0018 25.8 3.8 23 191-213 17-39 (144)
57 COG1222 RPT1 ATP-dependent 26S 26.0 1.4E+02 0.003 30.6 5.5 23 192-214 230-252 (406)
58 PRK01909 pdxA 4-hydroxythreoni 25.9 62 0.0013 32.4 3.0 19 11-29 7-27 (329)
59 KOG1014 17 beta-hydroxysteroid 25.8 94 0.002 30.9 4.2 34 196-237 64-97 (312)
60 PF14542 Acetyltransf_CG: GCN5 24.8 77 0.0017 24.5 2.8 37 190-237 39-75 (78)
61 COG1995 PdxA Pyridoxal phospha 24.6 57 0.0012 32.6 2.5 16 10-25 4-21 (332)
62 COG3193 GlcG Uncharacterized p 23.7 1.1E+02 0.0025 26.8 3.9 28 184-211 6-33 (141)
63 COG0723 QcrA Rieske Fe-S prote 23.5 58 0.0013 29.0 2.2 33 291-331 112-145 (177)
64 PLN03065 isocitrate dehydrogen 23.4 52 0.0011 34.5 2.1 12 128-139 212-233 (483)
65 cd00293 USP_Like Usp: Universa 23.1 1.5E+02 0.0033 22.8 4.4 26 188-213 9-34 (130)
66 PRK09982 universal stress prot 22.5 87 0.0019 26.3 3.0 25 190-214 15-39 (142)
67 PRK10569 NAD(P)H-dependent FMN 22.5 2.7E+02 0.0058 25.2 6.4 84 11-108 2-92 (191)
68 cd01989 STK_N The N-terminal d 21.4 82 0.0018 26.1 2.6 26 189-214 10-35 (146)
69 KOG2666 UDP-glucose/GDP-mannos 21.2 3.8E+02 0.0082 27.2 7.4 84 186-286 105-221 (481)
70 KOG4277 Uncharacterized conser 20.1 1.6E+02 0.0034 29.5 4.4 76 197-274 239-326 (468)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-106 Score=774.88 Aligned_cols=295 Identities=20% Similarity=0.194 Sum_probs=266.6
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcC---CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018978 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP---FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~---~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~ 84 (348)
|+++|++|||||||||||+++++++.+. +++|+|+++++|.++|++||.++|++|+++|+++||+||||+++|....
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 5689999999999999999999765444 3899999999999999999999999999999999999999999994321
Q ss_pred hhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC--CCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018978 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~--~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
. ..+.+|++++|||+||||||+||+ |++|++++.. ++|||||||||||+|+|.+++...++
T Consensus 82 ~-----~~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~---------- 144 (348)
T COG0473 82 L-----PRPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGG---------- 144 (348)
T ss_pred C-----CCcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCC----------
Confidence 1 124567889999999999999998 7888887765 47999999999999999876311110
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018978 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~ 241 (348)
+.++++++|||.++|||+|+|||+|++| +||||+|||+|||+.++++|+++|+||+ ++|
T Consensus 145 ---------------eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~y---- 204 (348)
T COG0473 145 ---------------EVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEY---- 204 (348)
T ss_pred ---------------eEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcC----
Confidence 1356789999999999999999999999 6999999999999999999999999999 799
Q ss_pred cCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcc
Q 018978 242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (348)
Q Consensus 242 ~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~ 320 (348)
|||+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++..++||||+||||||
T Consensus 205 --Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD---- 278 (348)
T COG0473 205 --PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD---- 278 (348)
T ss_pred --CCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc----
Confidence 999999999999999999999999 9999999999999999999999999999999984326999999999999
Q ss_pred cccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 321 HQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 321 ~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||| |||+|+|||++|||+|+|+
T Consensus 279 -IAGkgi-ANPiA~IlS~aMML~~~g~ 303 (348)
T COG0473 279 -IAGKGI-ANPIATILSAAMMLRHLGE 303 (348)
T ss_pred -ccCCCc-cChHHHHHHHHHHHHHhCC
Confidence 999999 9999999999999999986
No 2
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-100 Score=744.30 Aligned_cols=289 Identities=18% Similarity=0.194 Sum_probs=263.2
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhH
Q 018978 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKE 87 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~ 87 (348)
|+++|++|||||||||||+++++++...+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---- 76 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---- 76 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc----
Confidence 6789999999999999999999766556789999999999999999999999999999999999999999998431
Q ss_pred HHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCcc
Q 018978 88 FVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEK 166 (348)
Q Consensus 88 ~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 166 (348)
++.|+++.|||+||||+|+||+ |++|++.+++ ++|+|||||||||+|+|.+++.. ++ +
T Consensus 77 -----~~~~~~~~LR~~ldlyanvRP~--k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~----------~--- 135 (334)
T PRK08997 77 -----GFTSINVTLRKKFDLYANVRPV--LSFPGTKARYDNIDIITVRENTEGMYSGEGQTVS-ED----------G--- 135 (334)
T ss_pred -----CccchHHHHHHHcCCeEEEeec--ccCCCCCCccCCcCEEEEEeccCceecCccceec-CC----------C---
Confidence 3568899999999999999998 6778776654 58999999999999999865321 10 0
Q ss_pred chhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 018978 167 TELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (348)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~ 245 (348)
..++++++|||+++|||+|+||+||++|+ |+||+|||+|||+.++|+|+++|+||| ++| |+
T Consensus 136 -----------~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~y------P~ 197 (334)
T PRK08997 136 -----------ETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRY------PD 197 (334)
T ss_pred -----------ceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhC------CC
Confidence 12456789999999999999999999996 679999999999999999999999998 599 99
Q ss_pred ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccC
Q 018978 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 324 (348)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaG 324 (348)
|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+|||||| |||
T Consensus 198 V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPd-----IAG 270 (334)
T PRK08997 198 IEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAPD-----IAG 270 (334)
T ss_pred eEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchhh-----hCC
Confidence 9999999999999999999999 9999999999999999999999999999999976 4999999999999 999
Q ss_pred CCCCcChhHHHHHHHHHHHhhhc
Q 018978 325 GETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 325 k~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||| |||+|+|||++|||+|||+
T Consensus 271 k~i-ANP~a~IlS~amML~~lG~ 292 (334)
T PRK08997 271 KNL-ANPTSVILAAIQMLEYLGM 292 (334)
T ss_pred CCc-cCcHHHHHHHHHHHHHcCC
Confidence 999 9999999999999999986
No 3
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.7e-100 Score=751.30 Aligned_cols=343 Identities=76% Similarity=1.214 Sum_probs=291.5
Q ss_pred cccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018978 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 3 ~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|++||++.+|++||||||||||++++++++.+++++|+|+++++|.++|++||+++|++++++||++|++||||++||..
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~ 80 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 67999999999999999999999999988889999999999999999999999999999999999999999999999963
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018978 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
++..+..+.+.|+|+|+.|||+||||+|+||++++++++..+++..||+||||||||+|+|+++++.+.+.....|.+..
T Consensus 81 ~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~ 160 (402)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGED 160 (402)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCC
Confidence 21111122235899999999999999999998778866555555568999999999999999998765555444555443
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcccc
Q 018978 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~ 242 (348)
|. +.++...++. +.++....+|||++||||+|+||+||++|+++||+|||+|||+.+||+||++|+|||+++|.++|.
T Consensus 161 g~-~~e~~~~~~~-~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~ 238 (402)
T PRK08299 161 GE-PIEHEVHDFP-GAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFE 238 (402)
T ss_pred Cc-cccceecccc-cCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccc
Confidence 31 1111111111 122333346999999999999999999999899999999999999999999999998558944444
Q ss_pred CCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccc
Q 018978 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (348)
Q Consensus 243 ~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~i 322 (348)
+++|+++++|||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+||||||++..+|
T Consensus 239 ~~~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~I 318 (402)
T PRK08299 239 AAGITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQ 318 (402)
T ss_pred cCcEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccc
Confidence 44799999999999999999999999999999999999999999999999999999987523899999999999999999
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||||+.|||+|||||++|||+|||+
T Consensus 319 aGk~~~ANP~A~IlS~amML~~LG~ 343 (402)
T PRK08299 319 KGEETSTNPIASIFAWTRGLAHRGK 343 (402)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCC
Confidence 9999449999999999999999996
No 4
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.1e-99 Score=760.30 Aligned_cols=345 Identities=84% Similarity=1.356 Sum_probs=321.0
Q ss_pred cccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018978 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 3 ~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
++||+|+.||++|+|||||++||+.++++++.++++++|+++|+|.+++++||+++|+|++++||++||+||||++||+.
T Consensus 71 ~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~ 150 (483)
T PLN03065 71 ADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 150 (483)
T ss_pred hccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018978 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
++++|++|.+.|+|||++||+.||||+|+|||.++++|.+.++|+.||+|.|||+||.|.+.++++..+|++++.|.++.
T Consensus 151 ~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEn 230 (483)
T PLN03065 151 ARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPED 230 (483)
T ss_pred ccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCC
Confidence 77778888889999999999999999999999889999999999999999999999999999999988999999999987
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcccc
Q 018978 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~ 242 (348)
+....+..++++++ +++...+++|+++++||||+||+||++|+++||++||+||||.|||+|+++|+||++++||++|.
T Consensus 231 te~~~e~~v~~f~~-~gva~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp 309 (483)
T PLN03065 231 GNAPVELDVYDFKG-PGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFE 309 (483)
T ss_pred CCCcceeEeeccCC-CCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCC
Confidence 65444434455553 45666789999999999999999999999899999999999999999999999999878888883
Q ss_pred CCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccc
Q 018978 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (348)
Q Consensus 243 ~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~i 322 (348)
+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||||||++.||
T Consensus 310 ~~~I~~e~~lIDa~~~~lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~i 389 (483)
T PLN03065 310 EHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 389 (483)
T ss_pred CCCceEEeeeHHHHHHHHHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhc
Confidence 33799999999999999999999999999999999999999999999999999999988634799999999999999999
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhcC
Q 018978 323 KGGETSTNSIASIFAWSRGLAHRYKI 348 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~~ 348 (348)
+||+++|||+|+|||++|||+|+|++
T Consensus 390 aGk~t~ANPiA~IlA~ammL~hlg~l 415 (483)
T PLN03065 390 KGQETSTNSIASIFAWTRGLEHRAKL 415 (483)
T ss_pred cCCCCCcChHHHHHHHHHHHHHhCCC
Confidence 99996699999999999999999973
No 5
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=7e-100 Score=747.09 Aligned_cols=294 Identities=23% Similarity=0.227 Sum_probs=267.0
Q ss_pred ccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 018978 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (348)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~ 81 (348)
+|++-...++|++|||||||||||+++++++...+++|+|+++++|.++|++||+++|++++++|+++|++||||+++|.
T Consensus 34 ~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~ 113 (372)
T PLN00118 34 AFSSSSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
T ss_pred hhccCCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCc
Confidence 34444455899999999999999999997666568999999999999999999999999999999999999999999984
Q ss_pred chhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeec
Q 018978 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (348)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~ 160 (348)
. .++.|+|+.|||+||||+|+||+ |.+|++.+.+ ++|+|||||||||+|+|.+++.. +|
T Consensus 114 ~---------~~~~s~~~~LRk~ldLyaNvRPv--r~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~-~g-------- 173 (372)
T PLN00118 114 G---------KGHRSLNLTLRKELGLYANVRPC--YSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVV-RG-------- 173 (372)
T ss_pred c---------ccccCchHHHHHHcCCeeeeccc--ccCCCccCcccCceEEEEEecCCCcccceeeecc-CC--------
Confidence 2 14678899999999999999998 6778776654 57999999999999999876431 21
Q ss_pred CCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhc
Q 018978 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239 (348)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~ 239 (348)
.+...++|||+++|||+|+||+||++|+ |+||+|||+|||+.+||+|+++|+||+ ++|
T Consensus 174 ------------------v~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~ey-- 232 (372)
T PLN00118 174 ------------------VVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKY-- 232 (372)
T ss_pred ------------------eEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhC--
Confidence 1334688999999999999999999996 679999999999999999999999998 699
Q ss_pred cccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCC
Q 018978 240 KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHY 318 (348)
Q Consensus 240 ~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~ 318 (348)
|||+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+||||||
T Consensus 233 ----PdI~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPd-- 305 (372)
T PLN00118 233 ----PEIVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPD-- 305 (372)
T ss_pred ----CCceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhh--
Confidence 999999999999999999999999 99999999999999999999999999999999875 5999999999999
Q ss_pred cccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 319 RVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 319 ~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||| |||+|||||++|||+|||+
T Consensus 306 ---IAGk~i-ANP~A~IlS~amML~~lG~ 330 (372)
T PLN00118 306 ---IAGKNL-ANPTALLLSAVMMLRHLKL 330 (372)
T ss_pred ---hCCCCC-cCcHHHHHHHHHHHHHcCC
Confidence 999999 9999999999999999986
No 6
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-99 Score=739.18 Aligned_cols=294 Identities=17% Similarity=0.158 Sum_probs=260.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC---CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhh
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFP---FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~---~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~ 86 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|....
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 68999999999999999999766433 7999999999999999999999999999999999999999999883110
Q ss_pred HHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018978 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 87 ~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
. ....|+++.|||+||||+|+||+ |++|++.+++ ++|++||||||||+|+|.++.. .++.
T Consensus 83 --~--~~~~~~~~~LRk~ldLyaNvRP~--r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~-~~~~--------- 146 (344)
T PRK03437 83 --G--VLERGLLLKLRFALDHYVNLRPS--KLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGAL-RVGT--------- 146 (344)
T ss_pred --C--CcccchHHHHHHHcCCeEEEEEe--ecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccc-cCCC---------
Confidence 0 12456789999999999999998 6677665443 5899999999999999986432 1111
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018978 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~ 241 (348)
. ++.++++++|||++++||+|+||+||++|+ |+||+|||+|||+.++|+|+++|+||| ++|
T Consensus 147 --~-----------~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~y---- 208 (344)
T PRK03437 147 --P-----------HEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEY---- 208 (344)
T ss_pred --c-----------ceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhC----
Confidence 0 123567899999999999999999999995 679999999999999999999999998 699
Q ss_pred cCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCCCCc
Q 018978 242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYR 319 (348)
Q Consensus 242 ~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd~~~ 319 (348)
|+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++. ++||||+||||||
T Consensus 209 --pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPd--- 283 (344)
T PRK03437 209 --PDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPD--- 283 (344)
T ss_pred --CCceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchh---
Confidence 999999999999999999999999 999999999999999999999999999999997642 4999999999999
Q ss_pred ccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 320 VHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 320 ~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||| |||+|||||++|||+|||+
T Consensus 284 --iAGk~i-ANP~a~IlS~amML~~lg~ 308 (344)
T PRK03437 284 --IAGQGI-ADPTAAILSVALLLDHLGE 308 (344)
T ss_pred --hcCCCc-cChHHHHHHHHHHHHHcCC
Confidence 999999 9999999999999999985
No 7
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-99 Score=732.89 Aligned_cols=281 Identities=22% Similarity=0.211 Sum_probs=258.2
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
++|++|||||||||||+++++++...+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 589999999999999999997666568999999999999999999999999999999999999999998873
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccch
Q 018978 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (348)
.|.++.|||+||||+|+||+ |++|++.+.. ++|+|||||||||+|+|.+++.. ++
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~--r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~---------------- 129 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPV--KSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIA-DG---------------- 129 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEe--ecCCCCCCccCCcCEEEEEECCCceecCcccccC-CC----------------
Confidence 24578999999999999998 6777776553 58999999999999999876421 11
Q ss_pred hhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC----C-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC
Q 018978 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK----K-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (348)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r----~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~ 243 (348)
.+..+++|||++++||+|+||+||++| + |+||+|||+|||+.+||+|+++|+||| ++|
T Consensus 130 ----------~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~y------ 192 (330)
T PRK14025 130 ----------VTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEY------ 192 (330)
T ss_pred ----------ceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhC------
Confidence 133578999999999999999999999 4 579999999999999999999999998 599
Q ss_pred CCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccc
Q 018978 244 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (348)
Q Consensus 244 p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~i 322 (348)
|+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+|||||| |
T Consensus 193 p~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPd-----i 265 (330)
T PRK14025 193 PDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAPD-----I 265 (330)
T ss_pred CCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCchh-----h
Confidence 999999999999999999999999 9999999999999999999999999999999976 4999999999999 9
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||||+ |||+|||||++|||+|||+
T Consensus 266 AGk~i-ANP~a~IlS~ammL~~lG~ 289 (330)
T PRK14025 266 AGKGI-ANPTATILTAVLMLRHLGE 289 (330)
T ss_pred CCCCC-cCcHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999996
No 8
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-99 Score=738.91 Aligned_cols=294 Identities=17% Similarity=0.154 Sum_probs=259.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~ 84 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.++++++|+++|++++++||++|++||||+++|....
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 78999999999999999999655322 5899999999999999999999999999999999999999999984110
Q ss_pred hhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCC----CCCCEEEEecccCccccccceeeeCCCceeeeeec
Q 018978 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG----WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (348)
Q Consensus 85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~----~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~ 160 (348)
. . ....++++.|||+||||||+||+ |++|++.++ .++|+|||||||||+|+|.++... ++.
T Consensus 84 ~-~----~~~~~~~l~LR~~ldLyaNvRP~--k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~-~g~------- 148 (352)
T PRK08194 84 D-H----ISLWGLLIKIRREFEQVINIRPA--KQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIH-RGE------- 148 (352)
T ss_pred C-C----CCchhhHHHHHHHcCCEEEEEee--ecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCcccc-CCc-------
Confidence 0 0 01223489999999999999998 566765544 257999999999999999764321 110
Q ss_pred CCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 018978 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (348)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~ 240 (348)
++.++++++|||+++|||+|+||+||++|+++||+|||+|||+.++++|+++|+||| ++|
T Consensus 149 ----------------~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~y--- 208 (352)
T PRK08194 149 ----------------DEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDY--- 208 (352)
T ss_pred ----------------cceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhC---
Confidence 023567899999999999999999999998889999999999999999999999998 699
Q ss_pred ccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCCCC
Q 018978 241 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHY 318 (348)
Q Consensus 241 ~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd~~ 318 (348)
|+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ++||||+||||||
T Consensus 209 ---p~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPd-- 283 (352)
T PRK08194 209 ---PEIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD-- 283 (352)
T ss_pred ---CCceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchh--
Confidence 999999999999999999999999 999999999999999999999999999999996532 4899999999999
Q ss_pred cccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 319 RVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 319 ~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||| |||+|+|||++|||+|||+
T Consensus 284 ---iAGk~i-ANP~a~IlS~amML~~lg~ 308 (352)
T PRK08194 284 ---IAGKGI-ANPIGQIWTAKLMLDHFGE 308 (352)
T ss_pred ---hCCCCc-CCcHHHHHHHHHHHHHcCC
Confidence 999999 9999999999999999985
No 9
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=7.4e-99 Score=746.03 Aligned_cols=298 Identities=18% Similarity=0.136 Sum_probs=258.9
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCch
Q 018978 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~ 83 (348)
|.++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4589999999999999999999655422 589999999999999999999999999999999999999999988421
Q ss_pred hhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCC--C------CCCCEEEEecccCccccccceeeeCCCcee
Q 018978 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP--G------WTKPICIGRHAFGDQYRATDTVIQGPGKLK 155 (348)
Q Consensus 84 ~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~--~------~~~divivREnteG~Y~g~e~~~~~~g~~~ 155 (348)
.. ...+ ...++++.|||+||||+|+||+ |.+|++.. + .++|+|||||||||+|+|.++.......
T Consensus 125 ~~-~~~~--~~e~~ll~LRk~ldLyaNvRPv--r~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~-- 197 (409)
T PLN02329 125 KN-EKHL--RPEMALFYLRRDLKVFANLRPA--TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINEN-- 197 (409)
T ss_pred CC-cccc--cccccHHHHHHHcCCeEeeeee--eccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccC--
Confidence 00 0000 0125689999999999999998 55565432 1 2589999999999999997642110000
Q ss_pred eeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 018978 156 LVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (348)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~k 235 (348)
+++.+.++++|||+++|||+|+||+||++|+++||+|||+|||+ ++++|+++|+||| +
T Consensus 198 --------------------~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~ 255 (409)
T PLN02329 198 --------------------GEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-S 255 (409)
T ss_pred --------------------CceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-h
Confidence 01235678999999999999999999999988999999999999 8999999999998 6
Q ss_pred hhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCccc
Q 018978 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 314 (348)
Q Consensus 236 ey~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSA 314 (348)
+| |+|+++++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|||+++ ++||||+||||
T Consensus 256 ey------PdV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSA 328 (409)
T PLN02329 256 EY------PDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSA 328 (409)
T ss_pred hC------CCcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCc
Confidence 99 999999999999999999999999 99999999999999999999999999999999875 59999999999
Q ss_pred CCCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018978 315 TRHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 315 pd~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
|| |||||+ |||+|+|||++|||+| ||+
T Consensus 329 Pd-----IAGk~i-ANP~A~ILS~amML~~~Lg~ 356 (409)
T PLN02329 329 PD-----IAGQDK-ANPLATILSAAMLLKYGLGE 356 (409)
T ss_pred hh-----hcCCcc-cChHHHHHHHHHHHhhhCCC
Confidence 99 999999 9999999999999999 985
No 10
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=2.4e-98 Score=734.56 Aligned_cols=295 Identities=19% Similarity=0.192 Sum_probs=259.0
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~ 84 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|....
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 78999999999999999999755422 4899999999999999999999999999999999999999999884211
Q ss_pred hhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCC------CCCCEEEEecccCccccccceeeeCCCceeeee
Q 018978 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (348)
Q Consensus 85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~------~~~divivREnteG~Y~g~e~~~~~~g~~~~~~ 158 (348)
. .....++++.|||+||||+|+||+ |.+|++.++ .++|+|||||||||+|+|.+++.. ++.
T Consensus 84 ~-----~~~~~~~~l~LRk~ldLyaNvRP~--~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~~----- 150 (352)
T TIGR02089 84 D-----HISLWGLLLKIRREFDQYANVRPA--KLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RGT----- 150 (352)
T ss_pred C-----ccCchhhHHHHHHHcCCeEEEEEe--ecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CCc-----
Confidence 0 012234689999999999999998 556655433 257999999999999999854321 111
Q ss_pred ecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhh
Q 018978 159 VPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238 (348)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~ 238 (348)
. ++.++++++|||+++|||+|+||+||++|++|||+|||+|||+.++|+|+++|+||| ++|
T Consensus 151 ------~-----------~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~y- 211 (352)
T TIGR02089 151 ------D-----------EEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEY- 211 (352)
T ss_pred ------c-----------ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhC-
Confidence 0 123567899999999999999999999998889999999999999999999999998 699
Q ss_pred ccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCC
Q 018978 239 SKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTR 316 (348)
Q Consensus 239 ~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd 316 (348)
|+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ++||||+||||||
T Consensus 212 -----p~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd 286 (352)
T TIGR02089 212 -----PDVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD 286 (352)
T ss_pred -----CCceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh
Confidence 999999999999999999999999 999999999999999999999999999999997642 4899999999999
Q ss_pred CCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 317 HYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 317 ~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||| |||+|||||++|||+|||+
T Consensus 287 -----iAGk~i-ANP~a~Ils~amML~~lg~ 311 (352)
T TIGR02089 287 -----IAGKGI-ANPIGAIWTAAMMLEHLGE 311 (352)
T ss_pred -----hcCCCc-cCcHHHHHHHHHHHHHcCC
Confidence 999999 9999999999999999985
No 11
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3.6e-97 Score=725.51 Aligned_cols=294 Identities=21% Similarity=0.170 Sum_probs=255.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhh
Q 018978 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (348)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~ 86 (348)
+|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|......
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999755422 689999999999999999999999999999999999999999988421000
Q ss_pred HHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCC--C------CCCCEEEEecccCccccccceeeeCCCceeeee
Q 018978 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP--G------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (348)
Q Consensus 87 ~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~--~------~~~divivREnteG~Y~g~e~~~~~~g~~~~~~ 158 (348)
... ..+.+ +++|||+||||+|+||+ |.+|++.. + .++|+|||||||||+|+|.++.....+
T Consensus 81 -~~~-~~~~~-~~~LR~~ldlyanvRP~--r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~------ 149 (349)
T TIGR00169 81 -RDQ-RPEQG-LLKLRKSLDLFANLRPA--KVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAG------ 149 (349)
T ss_pred -ccc-cchhh-HHHHHHHcCCeEEEEEe--eccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCC------
Confidence 000 01223 89999999999999998 56665432 1 258999999999999999865211000
Q ss_pred ecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhh
Q 018978 159 VPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238 (348)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~ 238 (348)
. ++.++++++|||+++|||+|+||+||++|+++||+|||+|||+ ++|+|+++|+||| ++|
T Consensus 150 -----~------------~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~y- 209 (349)
T TIGR00169 150 -----G------------EGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEY- 209 (349)
T ss_pred -----C------------cceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhC-
Confidence 0 0225567899999999999999999999988999999999999 8999999999998 599
Q ss_pred ccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCC
Q 018978 239 SKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 317 (348)
Q Consensus 239 ~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~ 317 (348)
|+|++++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+||||||
T Consensus 210 -----P~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPd- 282 (349)
T TIGR00169 210 -----PDVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPD- 282 (349)
T ss_pred -----CCceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhH-
Confidence 999999999999999999999999 99999999999999999999999999999999765 5999999999999
Q ss_pred CcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018978 318 YRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 318 ~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
|||||+ |||+|||||++|||+| ||+
T Consensus 283 ----iAGk~i-ANP~a~IlS~amML~~~lg~ 308 (349)
T TIGR00169 283 ----IAGKGI-ANPIAQILSAAMMLRYSFNL 308 (349)
T ss_pred ----hcCCCC-CChHHHHHHHHHHHHhcCCC
Confidence 999999 9999999999999999 785
No 12
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=9.6e-97 Score=730.19 Aligned_cols=343 Identities=78% Similarity=1.287 Sum_probs=308.4
Q ss_pred ccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCch
Q 018978 4 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (348)
Q Consensus 4 ~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~ 83 (348)
+||||.+|+++|.||.|..-+|.-.++.++.++++|+|+++++|.+++++||+++|++++++||++|++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 68999999999999999999999999899999999999999999999999999999999999999999999999999764
Q ss_pred hhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCCC
Q 018978 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK 163 (348)
Q Consensus 84 ~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g 163 (348)
++.++.|.++|+|||++||+.||||||+|||.++++++..++|..||+|+||||||.|.++|+.+.++++.+..|.+.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 43456666789999999999999999999987788888888888999999999999999999999999988999998765
Q ss_pred CccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC
Q 018978 164 DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (348)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~ 243 (348)
..+....+..+...++++.+++|||+++|||||+||+||++|+++||+|||+|||+.+||+|+++|+|||+++|.++|++
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 33211111222111244556789999999999999999999998999999999999999999999999975699888888
Q ss_pred CCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCccccc
Q 018978 244 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (348)
Q Consensus 244 p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~ia 323 (348)
|+|++++++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++...||||+||||||++.+|||
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~ia 320 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQK 320 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhC
Confidence 89999999999999999999999999999999999999999999999999999999876336889999999998888889
Q ss_pred CC-CCCcChhHHHHHHHHHHHhhhc
Q 018978 324 GG-ETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 324 Gk-~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|| ++ |||+|+|||++|||+|||+
T Consensus 321 Gk~~~-ANP~A~IlS~ammL~~lg~ 344 (409)
T TIGR00127 321 GQETS-TNSIASIFAWSRGLAHRAK 344 (409)
T ss_pred CCCCc-cChHHHHHHHHHHHHHhhh
Confidence 96 78 9999999999999999974
No 13
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=4.2e-97 Score=745.22 Aligned_cols=287 Identities=22% Similarity=0.196 Sum_probs=262.8
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccC-CCCcHHHHHHHHhcCeeeecCCCCCCchhhh
Q 018978 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVK 86 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~ 86 (348)
|+++|+||||||||||||+++++++.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||+++|..
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~---- 78 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG---- 78 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc----
Confidence 458999999999999999999976666689999999999999999987 799999999999999999999999943
Q ss_pred HHHhhhcCCCcchHHhhhcCceEEeecccccCC-CCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCC
Q 018978 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNV-PRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (348)
Q Consensus 87 ~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~-p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (348)
.+++|+|+.|||+||||||+||+ +++ |++.+.+ ++|+|||||||||+|+|+|++.. ++
T Consensus 79 -----~~~~s~~~~LRk~ldLYaNvRP~--r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~-~~------------ 138 (482)
T PRK09222 79 -----GGYKSLNVTLRKTLGLYANVRPC--VSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQT-PD------------ 138 (482)
T ss_pred -----cCccchHHHHHHHcCCeEEeeeE--EecCCCCCCCCCCcCEEEEEeccCCeeccceeecC-CC------------
Confidence 24678899999999999999997 677 7766543 58999999999999999976521 11
Q ss_pred ccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC
Q 018978 165 EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (348)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~ 243 (348)
.+..+++|||+++|||+||||+||++|+ ||||++||+|||+.|||+|+++|+||| ++|
T Consensus 139 --------------~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~ey------ 197 (482)
T PRK09222 139 --------------VYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEY------ 197 (482)
T ss_pred --------------eeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhC------
Confidence 1335689999999999999999999996 679999999999999999999999998 699
Q ss_pred CCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccc
Q 018978 244 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (348)
Q Consensus 244 p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~i 322 (348)
|+|++++++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+|||||| |
T Consensus 198 PdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAPd-----I 270 (482)
T PRK09222 198 PDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----I 270 (482)
T ss_pred CCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCchh-----h
Confidence 999999999999999999999999 9999999999999999999999999999999976 4999999999999 9
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||||| |||+|||||++|||+|||+
T Consensus 271 AGk~i-ANP~a~IlSaamML~hlG~ 294 (482)
T PRK09222 271 AGKNI-ANPSGLLNAAVMMLVHIGQ 294 (482)
T ss_pred cCCCc-cCcHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999996
No 14
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-96 Score=729.31 Aligned_cols=344 Identities=74% Similarity=1.237 Sum_probs=311.0
Q ss_pred ccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 018978 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (348)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~ 81 (348)
.++||||..|++.|.||.+..-+++-.++.++.++++|+|+++++|.+++++||+++|++++++||++||+||||++||.
T Consensus 2 ~~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~ 81 (413)
T PTZ00435 2 TGGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPD 81 (413)
T ss_pred CcccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 36799999999999999999999999998999999999999999999999999999999999999999999999999997
Q ss_pred chhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecC
Q 018978 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (348)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~ 161 (348)
.++..+++|.++|+|||++||+.||||+|+|||.++++|++.++|+.|++++||||||.|.++++++.++++.+..|.+.
T Consensus 82 ~~~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 82 EARVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred cccccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecC
Confidence 64333567777899999999999999999999867999998888999999999999999999999998888777789987
Q ss_pred CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018978 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (348)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~ 241 (348)
.|..+.+..++++.. +++++..+|||+++|||||+||+||++|+++||+|||+||||.+||+|+++|+|||+++|.++|
T Consensus 162 ~g~~~~~~~~~~~~~-~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~ 240 (413)
T PTZ00435 162 DGSEPQRVDVFDFKG-GGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKF 240 (413)
T ss_pred CCCcceeeeeeccCC-CCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCcccc
Confidence 665433334444442 3455677999999999999999999999889999999999999999999999999865796666
Q ss_pred cCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCccc
Q 018978 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (348)
Q Consensus 242 ~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~ 321 (348)
.+++|+++++|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+||||||++.++
T Consensus 241 ~~~~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~ 320 (413)
T PTZ00435 241 EKAGLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQH 320 (413)
T ss_pred ccCCEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhh
Confidence 66699999999999999999999999999999999999999999999999999999998751389999999999977777
Q ss_pred ccCC-CCCcChhHHHHHHHHHHHhhhc
Q 018978 322 QKGG-ETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 322 iaGk-~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||| ++ |||+|||||++|||+|||+
T Consensus 321 iaGk~~~-ANP~A~Ils~ammL~~lg~ 346 (413)
T PTZ00435 321 QKGKETS-TNSIASIFAWTRGLAHRAK 346 (413)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHHhCc
Confidence 8996 78 9999999999999999985
No 15
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.2e-96 Score=739.68 Aligned_cols=284 Identities=23% Similarity=0.213 Sum_probs=259.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccC-CCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018978 11 PIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
+|++|||||||||||+++++++.+.+++|+|+++++|+++|+++| +++|++++++|+++|++||||+++|...
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~------ 75 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG------ 75 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc------
Confidence 699999999999999999976655689999999999999999995 8999999999999999999999999431
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCC-CCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccc
Q 018978 90 LKQMWKSPNGTIRNILNGTVFREPIICKNV-PRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~-p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (348)
+++|+|+.|||+||||||+||+ +++ |++.+.. ++|+|||||||||+|+|+|++.. ++
T Consensus 76 ---~~~s~~~~LRk~ldLYANvRPv--~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~-~~--------------- 134 (473)
T TIGR02924 76 ---GHKSLNVTLRKTLGLYANIRPC--VSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT-PD--------------- 134 (473)
T ss_pred ---CcccHHHHHHHHcCCeEEEEEe--eccCCCCCCccCCcCEEEEEeccCceecCceeecc-CC---------------
Confidence 3568899999999999999998 677 5555443 58999999999999999987531 11
Q ss_pred hhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 018978 168 ELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (348)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I 246 (348)
.+..+++|||+++|||+|+||+||++|+ ||||++||+|||+.|||+|+++|+||| ++| |+|
T Consensus 135 -----------~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~ey------PdI 196 (473)
T TIGR02924 135 -----------TYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEY------PDI 196 (473)
T ss_pred -----------hheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhC------CCc
Confidence 1234688999999999999999999996 679999999999999999999999998 599 999
Q ss_pred eEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCC
Q 018978 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG 325 (348)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk 325 (348)
+++++|||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+|||||| ||||
T Consensus 197 ~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~--~amFEpvHGSAPd-----IAGk 269 (473)
T TIGR02924 197 ESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----IAGQ 269 (473)
T ss_pred EEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCC--cceeecCCCchhh-----hCCC
Confidence 999999999999999999999 9999999999999999999999999999999976 4999999999999 9999
Q ss_pred CCCcChhHHHHHHHHHHHhhhc
Q 018978 326 ETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 326 ~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|+ |||+|||||++|||+|||+
T Consensus 270 ~i-ANP~a~IlSaamML~hLG~ 290 (473)
T TIGR02924 270 NI-ANPSGLLNAAIQMLVHIGQ 290 (473)
T ss_pred Cc-cChHHHHHHHHHHHHHcCC
Confidence 99 9999999999999999996
No 16
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-96 Score=732.84 Aligned_cols=308 Identities=20% Similarity=0.196 Sum_probs=263.4
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018978 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (348)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~ 84 (348)
|++|||||||||||+++++++.+. +++|+|+++++|.++|++||+++|++++++|+++|++||||+++|..
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~-- 103 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIG-- 103 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC--
Confidence 999999999999999999655321 25999999999999999999999999999999999999999999843
Q ss_pred hhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceee-eee
Q 018978 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-VFV 159 (348)
Q Consensus 85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~-~~~ 159 (348)
.+|.|+|+.|||+||||||+||+ |.+|++.+++ ++|||||||||||+|+|.+++...++..+. .|.
T Consensus 104 -------~~~~s~~l~LRk~ldLyaNvRPv--k~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~ 174 (412)
T PRK06451 104 -------KGWKSINVAIRLMLDLYANIRPV--KYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFL 174 (412)
T ss_pred -------cCCcChhHHHHHHcCCeEeecee--ecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccc
Confidence 25889999999999999999998 6677766543 579999999999999999864321111000 011
Q ss_pred cC-CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 018978 160 PE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (348)
Q Consensus 160 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key 237 (348)
.+ .+. +.. ++.+++.++|||.+++||+|+||+||++|+ |+||+|||+|||+.|+|+|+++|+||+++||
T Consensus 175 ~~~~~~--------~~~-~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~ey 245 (412)
T PRK06451 175 RKELGV--------EVE-DDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEF 245 (412)
T ss_pred cccccc--------ccc-cceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhC
Confidence 10 000 000 122456789999999999999999999996 6899999999999999999999999996588
Q ss_pred hc--------------cccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCC
Q 018978 238 KS--------------KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302 (348)
Q Consensus 238 ~~--------------~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~ 302 (348)
.+ +|.+|+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++.
T Consensus 246 pd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~ 325 (412)
T PRK06451 246 RDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTG 325 (412)
T ss_pred CcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCC
Confidence 43 4444579999999999999999999999 99999999999999999999999999999999764
Q ss_pred CceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 303 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 303 ~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
+||||+|||||| |||||+ |||+|||||++|||+|||.
T Consensus 326 --alFEpvHGSAPd-----iAGk~i-ANP~a~IlS~amML~~lg~ 362 (412)
T PRK06451 326 --GMFEAIHGTAPK-----YAGKNV-ANPTGIIKGGELMLRFMGW 362 (412)
T ss_pred --ceeECCCCCccc-----cCCCCC-cCcHHHHHHHHHHHHHcCC
Confidence 899999999999 999999 9999999999999999985
No 17
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-96 Score=730.64 Aligned_cols=311 Identities=20% Similarity=0.177 Sum_probs=263.9
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCC--CCcHHHHHHHHhcCeeeecCCCCCCc
Q 018978 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|++|||||||||||+++++++.+. +++|+|+++++|.++|+++|+ ++|++++++|+++|++||||+++|..
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999755321 159999999999999999999 99999999999999999999999843
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCC----CCCCEEEEecccCccccccceeeeCCCc-eeee
Q 018978 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG----WTKPICIGRHAFGDQYRATDTVIQGPGK-LKLV 157 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~----~~~divivREnteG~Y~g~e~~~~~~g~-~~~~ 157 (348)
..++|+|+.|||+||||+|+||+ |.+|++.++ .++|||||||||||+|+|.++....++. ....
T Consensus 102 ---------~~~~s~~l~LR~~ldLyaNvRPv--k~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~ 170 (409)
T PRK07006 102 ---------GGIRSLNVALRQELDLYVCLRPV--RYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIK 170 (409)
T ss_pred ---------cCccChHHHHHHHcCCEEEEEEE--ecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeee
Confidence 13678899999999999999998 556655443 2579999999999999999763211110 0001
Q ss_pred eecC-CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHh
Q 018978 158 FVPE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (348)
Q Consensus 158 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~k 235 (348)
|... .| +.+.+++. +.++..++|||+++|||+|+||+||++|+ |+||+|||+|||+.|||+|++++.|||++
T Consensus 171 ~~~~~~~-----~~~~~~~~-~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ 244 (409)
T PRK07006 171 FLQEEMG-----VKKIRFPE-TSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEE 244 (409)
T ss_pred ccccccC-----cccccccc-cceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHH
Confidence 1111 01 00111121 23566789999999999999999999996 67999999999999999999988899965
Q ss_pred hhhccccC-------------CCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCC
Q 018978 236 NWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301 (348)
Q Consensus 236 ey~~~~~~-------------p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~ 301 (348)
+|+++|.+ |+|+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++
T Consensus 245 ey~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~ 324 (409)
T PRK07006 245 EFGDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG 324 (409)
T ss_pred HhhhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCC
Confidence 89777765 899999999999999999999999 9999999999999999999999999999999954
Q ss_pred CCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 302 ~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
++||||+|||||| |||||+ |||+|+|||++|||+|||+
T Consensus 325 --~a~FEpvHGSAPd-----iAGk~i-ANP~a~IlS~amML~~lG~ 362 (409)
T PRK07006 325 --HAIFEATHGTAPK-----YAGLDK-VNPGSVILSAEMMLRHMGW 362 (409)
T ss_pred --ceEEECCCCcchh-----hCCCCC-cChHHHHHHHHHHHHHcCC
Confidence 5999999999999 999999 9999999999999999996
No 18
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-96 Score=722.11 Aligned_cols=297 Identities=20% Similarity=0.145 Sum_probs=259.7
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCch
Q 018978 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~ 83 (348)
|.++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 1 ~~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~ 80 (358)
T PRK00772 1 MTYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWD 80 (358)
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCC
Confidence 4578999999999999999999765422 689999999999999999999999999999999999999999988421
Q ss_pred hhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCC--CC------CCCEEEEecccCccccccceeeeCCCcee
Q 018978 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP--GW------TKPICIGRHAFGDQYRATDTVIQGPGKLK 155 (348)
Q Consensus 84 ~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~--~~------~~divivREnteG~Y~g~e~~~~~~g~~~ 155 (348)
.++. ...+..| |+.|||+||||+|+||+ |++|++.. +. ++|+|||||||||+|+|.++... ++.
T Consensus 81 ~~~~--~~~~~~~-~~~LR~~ldlyanvRP~--r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~~-- 152 (358)
T PRK00772 81 NLPP--DVRPERG-LLALRKELGLFANLRPA--KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GLG-- 152 (358)
T ss_pred CCCc--cCCChhh-HHHHHHHcCCeEEEeEe--ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CCC--
Confidence 1000 0012345 89999999999999998 56666543 21 58999999999999999865321 110
Q ss_pred eeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 018978 156 LVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (348)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~k 235 (348)
+ ++.++..++|||++++||+|+||+||++|+++||++||+|||+ ++|+|+++|+||| +
T Consensus 153 -------~-------------~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~ 210 (358)
T PRK00772 153 -------G-------------EERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-K 210 (358)
T ss_pred -------C-------------ceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-h
Confidence 0 1235567899999999999999999999988999999999999 7999999999998 5
Q ss_pred hhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCccc
Q 018978 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 314 (348)
Q Consensus 236 ey~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSA 314 (348)
|| |+|++++++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|||+++ ++||||+||||
T Consensus 211 ey------p~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSA 283 (358)
T PRK00772 211 EY------PDVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSA 283 (358)
T ss_pred HC------CCceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCch
Confidence 99 999999999999999999999999 99999999999999999999999999999999876 59999999999
Q ss_pred CCCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018978 315 TRHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 315 pd~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
|| |||||+ |||+|+|||++|||+| ||+
T Consensus 284 pd-----iAGk~~-aNP~a~Ils~ammL~~~lg~ 311 (358)
T PRK00772 284 PD-----IAGKGI-ANPIATILSAAMMLRYSLGL 311 (358)
T ss_pred hh-----hcCCCC-cCCHHHHHHHHHHHHHHCCC
Confidence 99 999999 9999999999999999 985
No 19
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.4e-96 Score=716.88 Aligned_cols=280 Identities=20% Similarity=0.189 Sum_probs=254.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
++|++|||||||||||+++++++.+.+++|+|+++++|.+ |.++|++++++|+++|++||||+++|...
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~------ 99 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG------ 99 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc------
Confidence 6899999999999999999976655589999999999986 67999999999999999999999998421
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccch
Q 018978 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (348)
++.|+++.|||+||||+|+||+ |++|++.+.+ ++|+|||||||||+|+|.+++.. ++
T Consensus 100 ---~~~s~~l~LR~~ldLyaNvRP~--k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~-~g---------------- 157 (360)
T PLN00123 100 ---GVSSLNVQLRKELDLFASLVNC--FNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVV-PG---------------- 157 (360)
T ss_pred ---CccchHHHHHHHcCCEEEEEEe--ecCCCCCCccCCCCEEEEEeCCCceeccceeecC-CC----------------
Confidence 2457889999999999999998 6788776553 58999999999999999876421 11
Q ss_pred hhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 018978 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (348)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~ 247 (348)
.+.++++|||+++|||+|+||+||++|+ ||||++||+|||+.++|+|+++|+||| ++| |+|+
T Consensus 158 ----------~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~ey------PdV~ 220 (360)
T PLN00123 158 ----------VVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKY------PGIK 220 (360)
T ss_pred ----------ceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhC------CCce
Confidence 1335789999999999999999999985 679999999999999999999999998 699 9999
Q ss_pred EeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCC--ccc--CCCCcccc
Q 018978 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH--GTV--TRHYRVHQ 322 (348)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~H--GSA--pd~~~~~i 322 (348)
++++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|||++ ++||||+| ||| || |
T Consensus 221 ~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~Pd-----I 293 (360)
T PLN00123 221 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNEK-----L 293 (360)
T ss_pred EeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCcc-----c
Confidence 99999999999999999999 9999999999999999999999999999999976 49999976 999 99 9
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||||| |||+|||||++|||+|||+
T Consensus 294 AGk~i-ANP~a~IlS~amML~~lG~ 317 (360)
T PLN00123 294 VEQKK-ANPVALLLSSAMMLRHLQF 317 (360)
T ss_pred cCCCc-cChHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999986
No 20
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1.6e-95 Score=710.80 Aligned_cols=284 Identities=20% Similarity=0.184 Sum_probs=256.9
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
++|++|||||||||||+++++++...+++|+|+++++|++ +++|+++|++++++|+++|++||||+++|...+
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~----- 76 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG----- 76 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc-----
Confidence 5799999999999999999976655589999999999997 678999999999999999999999999884321
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccch
Q 018978 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (348)
.++|+++.|||+||||+|+||+ |++|++.+.+ ++||+||||||||+|+|.+++.. ++
T Consensus 77 ---~~~s~~~~lR~~ldlyanvRP~--k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~---------------- 134 (333)
T TIGR00175 77 ---GHRSLNVALRKELDLYANVVHC--KSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESV-PG---------------- 134 (333)
T ss_pred ---cccchhHHHHHHcCCEEEeEEe--cCCCCCCCCCCCcCEEEEEEeCCCcccceeEecc-CC----------------
Confidence 2678899999999999999998 7788776653 57999999999999999876421 11
Q ss_pred hhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 018978 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (348)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~ 247 (348)
.+..+++|||+++|||+|+||+||++|+ ||||++||+|||+.+||+|+++|+||| ++| |+|+
T Consensus 135 ----------~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~y------p~v~ 197 (333)
T TIGR00175 135 ----------VVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEY------PDIT 197 (333)
T ss_pred ----------eEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHC------CCCe
Confidence 1334688999999999999999999996 569999999999999999999999998 589 9999
Q ss_pred EeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecC-CcccCCCCcccccCC
Q 018978 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA-HGTVTRHYRVHQKGG 325 (348)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~-HGSApd~~~~~iaGk 325 (348)
++++|||+++|+||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+ |||||| ||||
T Consensus 198 ~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~--~a~fEp~~hGSApd-----iaGk 270 (333)
T TIGR00175 198 FESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRD--YAVFEPGVRHTGPD-----IAGQ 270 (333)
T ss_pred eeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCC--CceEeccCCCCchh-----hCCC
Confidence 99999999999999999999 9999999999999999999999999999999976 4899995 599999 9999
Q ss_pred CCCcChhHHHHHHHHHHHhhhc
Q 018978 326 ETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 326 ~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|+ |||+|+|||++|||+|||+
T Consensus 271 ~i-aNP~a~Ils~ammL~~lG~ 291 (333)
T TIGR00175 271 NI-ANPTALILSSVMMLNHLGL 291 (333)
T ss_pred Cc-cChHHHHHHHHHHHHHcCC
Confidence 99 9999999999999999985
No 21
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=2e-95 Score=727.40 Aligned_cols=311 Identities=21% Similarity=0.180 Sum_probs=262.7
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC---C----CceEEEEEecchhhHhccC--CCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018978 12 IVEMDGDEMTRVFWKSIKDKLIFP---F----LELDIKYFDLGLPNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~~~~~~---~----~~i~~~~~~~G~~~~~~~g--~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|++|||||||||||+++++++.+. + ++|+|+++++|+++|++|| +++|++++++|+++|++||||+++|..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999655311 1 5999999999999999999 999999999999999999999999843
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceee-e
Q 018978 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-V 157 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~-~ 157 (348)
.+|+|+|+.||++||||||+||+ +++|++.+++ ++|||||||||||+|+|.++....++..++ .
T Consensus 109 ---------~~~~s~~l~LR~~ldLyaNvRP~--k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~ 177 (416)
T TIGR00183 109 ---------GGIRSLNVALRQELDLYVCLRPV--RYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIR 177 (416)
T ss_pred ---------ccccCcHHHHHHHcCCEEEEeEe--ecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeec
Confidence 24789999999999999999998 5556554432 579999999999999999865322211111 0
Q ss_pred eecC-CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHh
Q 018978 158 FVPE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (348)
Q Consensus 158 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~k 235 (348)
|... .|.. ...++ ++.++++++|||++++||+|+||+||++|+ ++||+|||+|||+.+||+|+++|.|||++
T Consensus 178 ~~~~~~g~~-----~~~~~-~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ 251 (416)
T TIGR00183 178 FLQNELGVK-----KIRFP-EDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKK 251 (416)
T ss_pred ccccccCcc-----ccccc-cccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHH
Confidence 1111 0100 00111 123567889999999999999999999995 68999999999999999999988899854
Q ss_pred hhhccccC-------------CCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCC
Q 018978 236 NWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301 (348)
Q Consensus 236 ey~~~~~~-------------p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~ 301 (348)
+|+.+|.+ |+|+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++
T Consensus 252 ey~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~ 331 (416)
T TIGR00183 252 EFGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDE 331 (416)
T ss_pred HHhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC
Confidence 78555443 499999999999999999999999 9999999999999999999999999999999965
Q ss_pred CCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 302 ~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
++||||+|||||| |||||+ |||+|+|||++|||+|||+
T Consensus 332 --~alFEp~HGSAPd-----iAGk~i-ANP~a~IlS~amML~~lg~ 369 (416)
T TIGR00183 332 --IGIFEATHGTAPK-----YAGQDK-VNPGSIILSGEMMLEHMGW 369 (416)
T ss_pred --ceEEECCCCCchh-----hcCCCC-CCcHHHHHHHHHHHHHcCC
Confidence 4999999999999 999999 9999999999999999985
No 22
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=5.3e-95 Score=703.56 Aligned_cols=281 Identities=21% Similarity=0.213 Sum_probs=258.1
Q ss_pred EEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHHhh
Q 018978 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (348)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~l~ 91 (348)
|++|||||||||||+++++++...+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~-------- 72 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP-------- 72 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC--------
Confidence 689999999999999999766555899999999999999999999999999999999999999999999531
Q ss_pred hcCCCcchHHhhhcCceEEeecccccCCCCCCCCC--CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccchh
Q 018978 92 QMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTEL 169 (348)
Q Consensus 92 ~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~--~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~ 169 (348)
++.|+|++|||+||||+|+||+ |.+|++.... ++|+|||||||||+|+|.++.. +
T Consensus 73 -~~~s~~~~LR~~ldlyanvRP~--r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~~--~------------------ 129 (322)
T TIGR02088 73 -GYKSVIVTLRKELDLYANVRPA--KSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFGF--S------------------ 129 (322)
T ss_pred -CccChHHHHHHHcCCEEEEEEe--eccCCCCCCCCCCCCEEEEEeCcCCeeecccccc--C------------------
Confidence 3678899999999999999998 5667665443 6899999999999999976421 0
Q ss_pred hhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEe
Q 018978 170 EVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 249 (348)
Q Consensus 170 ~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~ 249 (348)
+.+.++++|||+++|||+|+||+||++|++|||++||+|||+.++|+|+++|+||+ ++| | |+++
T Consensus 130 --------~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~y------p-v~~~ 193 (322)
T TIGR02088 130 --------DRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRY------G-VEYR 193 (322)
T ss_pred --------cceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhC------C-eeee
Confidence 12445788999999999999999999998889999999999999999999999998 699 9 9999
Q ss_pred eehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCCCCC
Q 018978 250 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS 328 (348)
Q Consensus 250 ~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk~i~ 328 (348)
+++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||.|||||| |||||+
T Consensus 194 ~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~d-----iaG~~~- 265 (322)
T TIGR02088 194 DMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAPD-----IAGKGI- 265 (322)
T ss_pred eeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChhH-----hCCCCC-
Confidence 999999999999999999 9999999999999999999999999999999976 4999999999999 999999
Q ss_pred cChhHHHHHHHHHHHhhhc
Q 018978 329 TNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 329 ANP~a~IlS~ammL~~lg~ 347 (348)
|||+|||+|++|||+|+|+
T Consensus 266 aNp~a~i~A~~~~l~~~g~ 284 (322)
T TIGR02088 266 ANPTAAILSVAMMLDYLGE 284 (322)
T ss_pred CChHHHHHHHHHHHHHcCC
Confidence 9999999999999999986
No 23
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=8e-95 Score=717.44 Aligned_cols=319 Identities=87% Similarity=1.312 Sum_probs=270.9
Q ss_pred CccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCC
Q 018978 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (348)
Q Consensus 1 ~~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p 80 (348)
||+.||||+.|+++|+|||||+|+++++++++++++++|+|+++++|.++|++||+++|++++++||++|++||||++||
T Consensus 1 ~~~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp 80 (410)
T PLN00103 1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (410)
T ss_pred CCcccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCc
Confidence 89999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCC----CCCCC----------------------CCCCEEEEe
Q 018978 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP----RLIPG----------------------WTKPICIGR 134 (348)
Q Consensus 81 ~~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p----~~~~~----------------------~~~divivR 134 (348)
...+..+.++...|+|+|++|||+||||+|+|||.+|++| ++..+ .++|+||||
T Consensus 81 ~~~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivR 160 (410)
T PLN00103 81 DEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVP 160 (410)
T ss_pred ccccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEe
Confidence 5321111122235899999999999999999994446776 44322 235889999
Q ss_pred cccCccccccceeeeCCCceeeeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 018978 135 HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTK 214 (348)
Q Consensus 135 EnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (348)
|||||+| ++... . |.+ +.+++...++|+++++||+|+||+||++|+++||+|||
T Consensus 161 ENTEg~y---e~~~~-~------~~g----------------~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~K 214 (410)
T PLN00103 161 EGKDEKT---ELEVY-N------FTG----------------AGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTK 214 (410)
T ss_pred cCCCcee---EEEee-c------cCC----------------CcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 9999999 23211 0 111 01233333359999999999999999999888999999
Q ss_pred CCcccccchhHHHHHHHHHHhhhhccccCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCcccccc
Q 018978 215 NTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMT 294 (348)
Q Consensus 215 aNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlap 294 (348)
+|||+.++|+||++|+||++++||++|-+|+|+++++|||++|||||++|++|||||+|||||||||++|+++|||||+|
T Consensus 215 aNVlk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlap 294 (410)
T PLN00103 215 NTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMT 294 (410)
T ss_pred CCCchhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhh
Confidence 99999999999999999996445555522289999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceeeecCCcccCCCCcc-cccCCCCCcChhHHHHHHHHHHHhhh
Q 018978 295 SVLVCPDGKTIEAEAAHGTVTRHYRV-HQKGGETSTNSIASIFAWSRGLAHRY 346 (348)
Q Consensus 295 sanig~~~~~~~fEp~HGSApd~~~~-~iaGk~i~ANP~a~IlS~ammL~~lg 346 (348)
|+|+|+++..+||||+||||||++.. .|||||+ |||+|+|||++|||+|||
T Consensus 295 Sanig~~~~~~~FEp~HGSApd~~~~~diaGk~i-ANP~A~IlS~ammL~~l~ 346 (410)
T PLN00103 295 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS-TNSIASIFAWSRGLAHRA 346 (410)
T ss_pred ccccCCCCCcEEEeCCCCcCcccchhhhhcCCCc-cChHHHHHHHHHHHHHhh
Confidence 99999875237999999999973222 2899999 999999999999999995
No 24
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.5e-94 Score=715.34 Aligned_cols=312 Identities=19% Similarity=0.160 Sum_probs=258.7
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCC--CCcHHHHHHHHhcCeeeecCCCCCCc
Q 018978 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|++|||||||||||+++++++.+. +++|+|.++++|+++++++|+ .+|++|+++|+++|++||||+++|..
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999755321 158999999999999999996 79999999999999999999999843
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceee--
Q 018978 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-- 156 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~-- 156 (348)
.+++|+|+.|||+||||+|+||+ |.+|++.+++ ++|+|||||||||+|+|++++...+.....
T Consensus 111 ---------~g~~s~~l~LRk~ldLyaNvRPv--r~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 111 ---------GGIRSLNVALRQIFDLYSCVRPC--RYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred ---------cCccchHHHHHHHcCCceeeeEe--eccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccc
Confidence 13578899999999999999998 5667665543 589999999999999999764211000000
Q ss_pred ----eeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC---CCCEEEEeCCCcccccchhHHHHH
Q 018978 157 ----VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK---KWPLYLSTKNTILKKYDGRFKDIF 229 (348)
Q Consensus 157 ----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r---~k~Vt~v~KaNVl~~~~g~f~~~~ 229 (348)
.+.+..+.. -..+++. +.++..++|||.+++||+|+||+||++| +++||+|||+|||+.++|+|++++
T Consensus 180 ~~~~~~~~~~~~~----~~~~~~~-~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~ 254 (474)
T PRK07362 180 HLNEEVIPASPEL----GKRQIPL-GSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWG 254 (474)
T ss_pred ccccccccccccc----ccccccc-ceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHH
Confidence 000000000 0001111 2355678999999999999999999998 367999999999999999999988
Q ss_pred HHHHHhhhhcccc-------------C------------------------------------------------CCceE
Q 018978 230 QEVYEANWKSKFE-------------A------------------------------------------------AGIWY 248 (348)
Q Consensus 230 ~eva~key~~~~~-------------~------------------------------------------------p~I~~ 248 (348)
.|||+++|+++++ + |+|.+
T Consensus 255 ~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 334 (474)
T PRK07362 255 YELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLV 334 (474)
T ss_pred HHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCccee
Confidence 8998547743321 1 45888
Q ss_pred eeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCCCC
Q 018978 249 EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 327 (348)
Q Consensus 249 ~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk~i 327 (348)
+++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|||++ .+||||+|||||| |||||+
T Consensus 335 ~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAPd-----IAGk~i 407 (474)
T PRK07362 335 DDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAPK-----HAGLDR 407 (474)
T ss_pred ehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCC--ceeeecCCCCchh-----hcCCCC
Confidence 9999999999999999999 9999999999999999999999999999999976 4999999999999 999999
Q ss_pred CcChhHHHHHHHHHHHhhhc
Q 018978 328 STNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 328 ~ANP~a~IlS~ammL~~lg~ 347 (348)
|||+|||||++|||+|||.
T Consensus 408 -ANP~A~ILS~aMML~~LG~ 426 (474)
T PRK07362 408 -INPGSVILSGVMMLEYLGW 426 (474)
T ss_pred -cCcHHHHHHHHHHHHHcCC
Confidence 9999999999999999985
No 25
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-93 Score=673.81 Aligned_cols=284 Identities=21% Similarity=0.251 Sum_probs=263.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018978 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
+++++||||||||||++++.+++.++.++|+|+..|.+...--.++..+|+++++++++++++||||+.||..+
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k------ 109 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK------ 109 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc------
Confidence 58999999999999999999877878999999999987765545888999999999999999999999999763
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEecccCccccccceeeeCCCceeeeeecCCCCccch
Q 018978 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~-~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (348)
+.+|+|++|||+|+||||+||+ ++++|.+..|+ +|+|+|||||||+|+|+||.+ .+|+
T Consensus 110 ---gh~S~nl~LRK~f~LyANVRPc--~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~v-vpGV--------------- 168 (365)
T KOG0785|consen 110 ---GHRSLNLALRKEFGLYANVRPC--KSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQV-VPGV--------------- 168 (365)
T ss_pred ---ccccHHHHHHHHhchhccceec--ccccCCcCCCCCceEEEEecCCccccccceeec-cccH---------------
Confidence 4579999999999999999996 89999998875 799999999999999999965 3543
Q ss_pred hhhccccCCcceeee-eeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 018978 169 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (348)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I 246 (348)
+++ ++|||.+++|||+|||+||++++ ++||++||||||+.+||+|+++|+|++ ++| |||
T Consensus 169 ------------vqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y------~dI 229 (365)
T KOG0785|consen 169 ------------VQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKY------PDI 229 (365)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhC------Ccc
Confidence 233 78999999999999999999986 689999999999999999999999997 699 999
Q ss_pred eEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCC
Q 018978 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG 325 (348)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk 325 (348)
+++++|+|+||++||++|.+| |+|+||||||||||++|+|+||||+.||+||| ++ .++|||+|||||| ||||
T Consensus 230 ~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPD-----IAGk 302 (365)
T KOG0785|consen 230 KFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPD-----IAGK 302 (365)
T ss_pred chhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCcc-----cccC
Confidence 999999999999999999999 99999999999999999999999999999999 55 5899999999999 9999
Q ss_pred CCCcChhHHHHHHHHHHHhhhc
Q 018978 326 ETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 326 ~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|+ |||+|++||++|||+|+|.
T Consensus 303 dl-ANPtAlllS~vmMLrhm~l 323 (365)
T KOG0785|consen 303 DL-ANPTALLLSAVMMLRHMGL 323 (365)
T ss_pred Cc-CCcHHHHHHHHHHHHHcCc
Confidence 99 9999999999999999973
No 26
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.7e-92 Score=695.18 Aligned_cols=292 Identities=25% Similarity=0.287 Sum_probs=253.1
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhh
Q 018978 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (348)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~ 86 (348)
+|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.....+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 6999999999999999999655433 589999999999999999999999999999999999999999999632111
Q ss_pred HHHhhhcCCCcchHHhhhcCceEEeecccccCCCC--CCCC------CCCCEEEEecccCccccccceeeeCCCceeeee
Q 018978 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR--LIPG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (348)
Q Consensus 87 ~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~--~~~~------~~~divivREnteG~Y~g~e~~~~~~g~~~~~~ 158 (348)
+ .++.++|||+||||+|+||+ +.+|+ ..++ .++||+||||||||+|+|.++... ++.
T Consensus 81 ~-------~~~l~~lR~~ldl~anvRp~--~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~-~~~----- 145 (348)
T PF00180_consen 81 S-------ENGLLKLRKELDLYANVRPV--RSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIG-DGG----- 145 (348)
T ss_dssp H-------HHHHHHHHHHTTHHEEEEEE--EEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEEC-SEE-----
T ss_pred c-------HHHHHHHHHhcccceeeEEE--EEeccccccccccccccCcceEEEecccccCcccCCCCcee-ecc-----
Confidence 1 01237999999999999998 55542 2222 248999999999999999998753 110
Q ss_pred ecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 018978 159 VPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (348)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key 237 (348)
.+++.+..+++|||+++|||+|+||+||++| +|+||+|||+|||+.++ +|+++|+||++++|
T Consensus 146 ----------------~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~y 208 (348)
T PF00180_consen 146 ----------------TPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEY 208 (348)
T ss_dssp ----------------EGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTH
T ss_pred ----------------CCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhc
Confidence 0013466779999999999999999999999 68899999999999888 99999999994499
Q ss_pred hccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCC
Q 018978 238 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 316 (348)
Q Consensus 238 ~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd 316 (348)
|+|++++++||+++|+||++|++| ||||+|||||||||++|+++||+||+||+|+|++. ++||||+||||||
T Consensus 209 ------p~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSApd 281 (348)
T PF00180_consen 209 ------PDIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAPD 281 (348)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTGG
T ss_pred ------ceeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-ccccccccccccc
Confidence 999999999999999999999999 99999999999999999999999999999999654 6999999999999
Q ss_pred CCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018978 317 HYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 317 ~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
|||||+ |||+|||||++|||+| ||.
T Consensus 282 -----iaGk~~-aNP~a~Ils~a~mL~~~lg~ 307 (348)
T PF00180_consen 282 -----IAGKGI-ANPIAMILSAAMMLEHSLGL 307 (348)
T ss_dssp -----GTTSSH-S-THHHHHHHHHHHHHHHTH
T ss_pred -----ccCCcc-cCcHHHHHHHHHHHHHhcCC
Confidence 999999 9999999999999999 874
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.7e-86 Score=645.90 Aligned_cols=329 Identities=33% Similarity=0.448 Sum_probs=307.6
Q ss_pred EEECCCCchHHHHHHHHHHHhcCCCceE-EEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHHhh
Q 018978 13 VEMDGDEMTRVFWKSIKDKLIFPFLELD-IKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (348)
Q Consensus 13 ~vi~GDGIGpEv~~~~~~~~~~~~~~i~-~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~l~ 91 (348)
+.|.||.|..-+|+..++.++.++++++ |++||+|.+++++|.+.+.-|+.++++++.|++|||+.||+.+|++|++|.
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 6799999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcchHHhhhcCc-eEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccchhh
Q 018978 92 QMWKSPNGTIRNILNG-TVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELE 170 (348)
Q Consensus 92 ~~~~s~~~~lR~~ldl-yanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~~ 170 (348)
+.|+|||.+||+.||. .++..||.|+++| ++|+.||+|.|+..+|.|.. ++.+..+|++++.|.+..|..+.+.+
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999888875 78999999999999999999 99998999999999998887777778
Q ss_pred hccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC-----CC
Q 018978 171 VYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-----AG 245 (348)
Q Consensus 171 ~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~-----p~ 245 (348)
+++|++..++...+++|.+.++||||+||+||++|+++||+|||+||||.++|+|+ +|+||++++||++|.+ |+
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 89998557888899999999999999999999999989999999999998899886 9999986799999987 88
Q ss_pred ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCC--CC-ceeeecCCcccCCCCccc
Q 018978 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD--GK-TIEAEAAHGTVTRHYRVH 321 (348)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~--~~-~~~fEp~HGSApd~~~~~ 321 (348)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+||||||++++|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 9999999999999999999999 9999999999999999999999999999999954 52 389999999999955555
Q ss_pred ccCCC-CCcChhHHHHHHHHHHHhhhc
Q 018978 322 QKGGE-TSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 322 iaGk~-i~ANP~a~IlS~ammL~~lg~ 347 (348)
.+||+ + |||+|+|||++|||+|+++
T Consensus 317 ~~Gk~~~-ANPiA~IlA~a~mL~~~~~ 342 (393)
T PLN00096 317 LRGEETS-LNPLGMVEGLIGAMNHAAD 342 (393)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHhhcc
Confidence 55995 8 9999999999999999964
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.4e-81 Score=606.11 Aligned_cols=316 Identities=34% Similarity=0.450 Sum_probs=283.4
Q ss_pred EEEECCCCchHHHHHHHHHHHh----cCC---CceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018978 12 IVEMDGDEMTRVFWKSIKDKLI----FPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (348)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~~~~----~~~---~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~ 84 (348)
|-+|.|||||||+++++.+++. .++ .+|+|.++++|.+++++||+.+|+||++++|++.|.+|||++||-+
T Consensus 21 iP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg-- 98 (407)
T COG0538 21 IPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG-- 98 (407)
T ss_pred cceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc--
Confidence 5699999999999999985442 334 8999999999999999999999999999999999999999999954
Q ss_pred hhHHHhhhcCCCcchHHhhhcCceEEeecccc-cCCCCCCCC-CCCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018978 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~-~~~p~~~~~-~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
++|+|+|++||+.||||+|+|||++ +++|++.+. |..||||+||||||.|.|+||....++..++.+..+.
T Consensus 99 -------~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~ 171 (407)
T COG0538 99 -------KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLED 171 (407)
T ss_pred -------ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhc
Confidence 5899999999999999999999997 599977766 8899999999999999999999877777666655443
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhh-----
Q 018978 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAN----- 236 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~ke----- 236 (348)
+. .+.+.+++.+.++...+ |++++++|++|.||+||.+++ +.||++||.||||.|+|.|+++++|||+++
T Consensus 172 e~---~~~~i~~pe~~GIgikp-~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~ 247 (407)
T COG0538 172 EM---GVKKIRFPEDSGIGIKP-ISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDE 247 (407)
T ss_pred cc---ccceEecCCCCceEEEe-cCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhccccc
Confidence 32 23456777656666555 799999999999999999998 689999999999999999999999999874
Q ss_pred ---hhccccCCC----ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeee
Q 018978 237 ---WKSKFEAAG----IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 308 (348)
Q Consensus 237 ---y~~~~~~p~----I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fE 308 (348)
|+.+|...+ |.++++++|+|.+|++++|+.| ||+|+||.||++||.+|+.+|||||+||+||| ++ +++||
T Consensus 248 ~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~-~~-~~~fE 325 (407)
T COG0538 248 VVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIG-DG-TAEFE 325 (407)
T ss_pred ccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceec-Cc-eEEEE
Confidence 566677778 9999999999999999999999 99999999999999999999999999999999 44 69999
Q ss_pred cCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhcC
Q 018978 309 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI 348 (348)
Q Consensus 309 p~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~~ 348 (348)
|+|||||+ +|||+. +||+|.|||+.|||+|+|.+
T Consensus 326 A~HGTapk-----~aG~~~-~Np~a~Ils~~~ml~~~Gw~ 359 (407)
T COG0538 326 ATHGTAPK-----YAGKDS-TNPIASILSGTMMLRHRGWL 359 (407)
T ss_pred eccCcccc-----ccCcCC-CCcHHHHHHHHHHHHHhhhh
Confidence 99999999 899999 99999999999999999964
No 29
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-79 Score=581.26 Aligned_cols=285 Identities=20% Similarity=0.195 Sum_probs=255.6
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhH
Q 018978 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKE 87 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~ 87 (348)
..++|++|||||||||++.++.+++.+..+|++|+++++++ . .+.+...++|.+++++++++.|||.+.||...
T Consensus 41 g~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~-~-~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~---- 114 (375)
T KOG0784|consen 41 GRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSG-S-NKESSEDLDEAVESIKRNKVALKGNIETPDLP---- 114 (375)
T ss_pred CcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccC-C-ccccchhHHHHHHHHHhcceeEeecccCCCCc----
Confidence 44789999999999999999998777789999999999987 2 22344579999999999999999999998321
Q ss_pred HHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCcc
Q 018978 88 FVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEK 166 (348)
Q Consensus 88 ~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 166 (348)
.+..|.|+.||++||||||+-- |+++||+++++ ++||+||||||||+|++.||+.. ||+.|
T Consensus 115 ----g~~~s~n~~LR~~LDLyanvv~--~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V-pGVVE----------- 176 (375)
T KOG0784|consen 115 ----GGAKSLNVKLRKELDLYANVVH--CKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV-PGVVE----------- 176 (375)
T ss_pred ----cchhhhHHHHHHhhhhhhheee--eeccCCcccccCCccEEEEecCCcccccccccccC-cchhh-----------
Confidence 2457889999999999999986 59999999886 47999999999999999999753 55421
Q ss_pred chhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 018978 167 TELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (348)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~ 245 (348)
..+++|+.+++|||||||+||.+++ ||||+|||||+||.+||+|+++|+||| +.| |+
T Consensus 177 ---------------sLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva-~~Y------p~ 234 (375)
T KOG0784|consen 177 ---------------SLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVA-KKY------PD 234 (375)
T ss_pred ---------------eeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHH-hcC------CC
Confidence 1378999999999999999999986 789999999999999999999999999 469 99
Q ss_pred ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecC--CcccCCCCcccc
Q 018978 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA--HGTVTRHYRVHQ 322 (348)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~--HGSApd~~~~~i 322 (348)
|+++.|+||++|||||++|+|| |+|+|||||.|||.+||+|+||.|+.|++|+|++ +++|||. |++ .+ +
T Consensus 235 I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~g~r~~~-~~-----~ 306 (375)
T KOG0784|consen 235 ITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEPGARHTG-TS-----I 306 (375)
T ss_pred ccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccc--eEEecccccccc-hh-----h
Confidence 9999999999999999999999 9999999999999999999999999999999987 5999994 666 34 9
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018978 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
+||++ |||+|||||++|||+|||.
T Consensus 307 ~g~~~-aNPtA~llss~~MLrHL~l 330 (375)
T KOG0784|consen 307 AGKNI-ANPTAMLLSSVDMLRHLGL 330 (375)
T ss_pred hcccc-cCcHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999984
No 30
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-73 Score=526.07 Aligned_cols=285 Identities=21% Similarity=0.191 Sum_probs=249.4
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc--
Q 018978 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE-- 82 (348)
Q Consensus 9 ~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~-- 82 (348)
.|+|+++|||||||||+..+.+++.+. +++|+|++.++|+.+.+.+|.++|+||+.+.|++|++|+|+++.+..
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 489999999999999999999766544 68999999999999999999999999999999999999999987642
Q ss_pred --hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCC------CCC--CCCCEEEEecccCccccccceeeeCCC
Q 018978 83 --ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL------IPG--WTKPICIGRHAFGDQYRATDTVIQGPG 152 (348)
Q Consensus 83 --~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~------~~~--~~~divivREnteG~Y~g~e~~~~~~g 152 (348)
-+ +|.+| +.||+.|.+|||+||+. .+|.+ ++. .+.|++||||.|+|+|+|.....
T Consensus 84 ~~lr-pe~gl--------l~ir~~lkvfanlrp~~--~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~e---- 148 (363)
T KOG0786|consen 84 NHLR-PEMGL--------LKIRRDLKVFANLRPAT--VLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNE---- 148 (363)
T ss_pred CCcC-hhhhH--------HHHHHHHHHHhcCCcch--hhHhhhccccccHHHhcCcceEEeeeecCceeecCcccC----
Confidence 12 23343 58999999999999974 33332 222 24799999999999999964321
Q ss_pred ceeeeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhHHHHHH
Q 018978 153 KLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRFKDIFQ 230 (348)
Q Consensus 153 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~--k~Vt~v~KaNVl~~~~g~f~~~~~ 230 (348)
. |++.++++.+|+-+++.||+|.||+.|++|+ .++|++||+||+. ++-+||+.++
T Consensus 149 ---------n-------------g~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~ 205 (363)
T KOG0786|consen 149 ---------N-------------GEGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVT 205 (363)
T ss_pred ---------C-------------CcceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHH
Confidence 1 1133667889999999999999999999997 7899999999998 5789999888
Q ss_pred HHHHhhhhccccCCCceEeeehHHHHHHHHHhCCCCc--EEEeCCcccchHHhhhhhhcCccccccccccC-----CCCC
Q 018978 231 EVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY--VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC-----PDGK 303 (348)
Q Consensus 231 eva~key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F--Viv~~NlfGDILSDlaa~l~GslGlapsanig-----~~~~ 303 (348)
+.-+.|| |++++.|+|||+++|+||++|.+| +|||.|+|||||||.++.+.||+||.|||+++ +.+
T Consensus 206 ~~~k~Ey------P~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~- 278 (363)
T KOG0786|consen 206 KALKSEY------PDLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG- 278 (363)
T ss_pred HHHHhhC------CCcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-
Confidence 7666799 999999999999999999999999 99999999999999999999999999999998 333
Q ss_pred ceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHh
Q 018978 304 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH 344 (348)
Q Consensus 304 ~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~ 344 (348)
+++|||+|||||| ||||++ +||+|+|||++|||.|
T Consensus 279 ~gL~EPiHGSAPD-----iagk~k-vNPlaTILSAamlLky 313 (363)
T KOG0786|consen 279 PGLFEPIHGSAPD-----IAGKDK-VNPLATILSAAMLLKY 313 (363)
T ss_pred CcccccCCCCCCC-----cCCCCc-cChHHHHHHHHHHHHh
Confidence 7999999999999 999999 9999999999999998
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.7e-65 Score=483.11 Aligned_cols=347 Identities=79% Similarity=1.302 Sum_probs=334.4
Q ss_pred CccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCC
Q 018978 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (348)
Q Consensus 1 ~~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p 80 (348)
++|+||++.+||+.+.||.+..-||+...+.++-+.+++++.+||+|.+++++|.+.++.|+.+++++++|++||++.||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 46899999999999999999999999999889989999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeec
Q 018978 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (348)
Q Consensus 81 ~~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~ 160 (348)
+..+++|++|.+.|+|||.+||..|+..++..||.|+++|.++++|..||+|-|+..++.|...+..+.++|.+++.|.+
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 018978 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (348)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~ 240 (348)
.+|....+..+++|++ .+++..+++|.+.++-+|+.+|+||.+++.++++.+|-.|||.+||.|.++|+|+++++||.+
T Consensus 170 ~dg~~~~~~~V~~f~~-~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~k 248 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKG-SGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSK 248 (422)
T ss_pred CCCCcceeEEEEecCC-CceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHH
Confidence 8887777778899987 566677889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcc
Q 018978 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (348)
Q Consensus 241 ~~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~ 320 (348)
|.+.+|+|+|.+||+|.+|++++-+.|||.|.|+.||+-||+.||-.|||||..|..++||+++..-|++|||..+||+.
T Consensus 249 fe~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~ 328 (422)
T KOG1526|consen 249 FEALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRM 328 (422)
T ss_pred HHhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999777889999999999999
Q ss_pred cccCCCCCcChhHHHHHHHHHHHhhhcC
Q 018978 321 HQKGGETSTNSIASIFAWSRGLAHRYKI 348 (348)
Q Consensus 321 ~iaGk~i~ANP~a~IlS~ammL~~lg~~ 348 (348)
|..|+..|.||||.|++|...|.|.|+|
T Consensus 329 hqkG~eTSTN~IASIFAWtRgl~hR~kL 356 (422)
T KOG1526|consen 329 HQKGQETSTNSIASIFAWTRGLAHRAKL 356 (422)
T ss_pred HhcCCCccCcchHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999986
No 32
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=95.02 E-value=0.017 Score=56.43 Aligned_cols=139 Identities=19% Similarity=0.074 Sum_probs=71.8
Q ss_pred eeeChHHHHHHHHHHHHHHHh-CC--CCEEEEeCCCcccccchhHH-HHHHHHH--HhhhhccccCCCceEe-eehHHHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQ-KK--WPLYLSTKNTILKKYDGRFK-DIFQEVY--EANWKSKFEAAGIWYE-HRLIDDM 256 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~-r~--k~Vt~v~KaNVl~~~~g~f~-~~~~eva--~key~~~~~~p~I~~~-~~~VDa~ 256 (348)
..+|.+.+.+.++...+.-++ -+ ++-..|-==|==.--.|+|= |.-+.+. -++- ++.+|.+. ..=-|.+
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~----~~~gi~v~GP~paDt~ 225 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEA----RAEGIDVFGPYPADTV 225 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHH----HHTTHEEEEEE-HHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHH----HhCCCceECCCccHHh
Confidence 457999999888887766655 23 33222222232221245663 3322221 0111 11566655 4455654
Q ss_pred HHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCc-eeeecCCcccCCCCcccccCCCCCcChhHH
Q 018978 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSIAS 334 (348)
Q Consensus 257 ~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~-~~fEp~HGSApd~~~~~iaGk~i~ANP~a~ 334 (348)
..+- .-++| ++|+ || =|.+-.=.--+++--+.|+-- +.+ ---=|.||||.| |||||+ |||.+|
T Consensus 226 F~~~--~~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTl-GLP~iRTS~DHGTAfD-----IAGkg~-A~~~s~ 290 (298)
T PF04166_consen 226 FGKA--NRGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTL-GLPIIRTSPDHGTAFD-----IAGKGI-ADPSSM 290 (298)
T ss_dssp TSHH--HHTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEE-SSSSEEEEESS-S-CC-----GTTTTT-S-THHH
T ss_pred hhcc--hhccCCEEEE--ee----cccCccceeecccccceEEec-CCCeeeecCCCCchhh-----hhCCCC-CChHHH
Confidence 4433 23567 6666 33 455544444555555666621 111 334688999999 999999 999999
Q ss_pred HHHHHHH
Q 018978 335 IFAWSRG 341 (348)
Q Consensus 335 IlS~amm 341 (348)
+-+.-+.
T Consensus 291 ~~Ai~~A 297 (298)
T PF04166_consen 291 IEAIKLA 297 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
No 33
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=94.36 E-value=0.03 Score=55.45 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=80.5
Q ss_pred eeeChHHHHHHHHHHHHHHHhCC--C-CEE-EEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQKK--W-PLY-LSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VDa 255 (348)
..+|.+.+.+.++.+.+.-++-+ + |+- +.=..+.=. .|+| +|..+.+. -++.|. .++..+ ..=-|.
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~----~G~~v~GP~paDt 249 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRA----KGMDVYGPCPPDT 249 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchh
Confidence 35789999888888877655333 2 222 223333333 5778 55444332 112322 223222 334454
Q ss_pred HHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCc-eeeecCCcccCCCCcccccCCCCCcChhH
Q 018978 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (348)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~-~~fEp~HGSApd~~~~~iaGk~i~ANP~a 333 (348)
+..+-.+ ++| ++||. | =|.+--=.-.+++--+.|+-- +.+ ----|-||||.| |||||+ |||.+
T Consensus 250 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkG~-A~~~S 314 (326)
T PRK03371 250 VFLQAYE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITA-GLPFIRTSADHGTAFD-----IAWTGK-AKSES 314 (326)
T ss_pred hcccccc--cCCCEEEEc--c----ccccchhheecccccceEEec-CCCeeEecCCCCchhh-----hhcCCc-CCHHH
Confidence 4333333 468 66663 3 255555556666666777731 112 223578999999 999999 99999
Q ss_pred HHHHHHHHHH
Q 018978 334 SIFAWSRGLA 343 (348)
Q Consensus 334 ~IlS~ammL~ 343 (348)
|+-+.-+..+
T Consensus 315 ~~~Ai~lA~~ 324 (326)
T PRK03371 315 MAVSIKLAMQ 324 (326)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 34
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=94.29 E-value=0.031 Score=55.48 Aligned_cols=140 Identities=16% Similarity=0.081 Sum_probs=79.6
Q ss_pred eeeChHHHHHHHHHHHHHHHhCC--C-CEEE-EeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQKK--W-PLYL-STKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--k-~Vt~-v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VDa 255 (348)
..+|.+.+.+.++.+-+.-++.+ + |+-+ .=....=. .|+| +|..+.+. -++.+ +.++..+ ..=-|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt 250 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGE--GGHFGREEIDIIIPALEELR----AEGINLVGPLPADT 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCC--CCCCCHHHHHHHHHHHHHHH----hCCCCcCCCCCchh
Confidence 45899999999998888666334 2 3322 22222222 4667 44433321 11221 1233322 334455
Q ss_pred HHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCce-eeecCCcccCCCCcccccCCCCCcChhH
Q 018978 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (348)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~-~fEp~HGSApd~~~~~iaGk~i~ANP~a 333 (348)
+..+-.+ +.| ++||. | =|.+-.=.--+++--+.|+-- +.+. ---|-||||.| |||||+ |||.+
T Consensus 251 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLPiiRTS~DHGTAfD-----IAGkg~-A~~~S 315 (332)
T PRK00232 251 LFQPAYL--GDADAVLAM--Y----HDQGLPVLKYLGFGRGVNITL-GLPFIRTSVDHGTALD-----LAGKGI-ADVGS 315 (332)
T ss_pred hcccccc--CCCCEEEEC--c----ccccchhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHH
Confidence 4433333 468 66663 3 245544455566666777631 1122 23578999999 999999 99999
Q ss_pred HHHHHHHHHHh
Q 018978 334 SIFAWSRGLAH 344 (348)
Q Consensus 334 ~IlS~ammL~~ 344 (348)
|+-+.-+..+.
T Consensus 316 ~~~Ai~lA~~~ 326 (332)
T PRK00232 316 FITALNLAIRM 326 (332)
T ss_pred HHHHHHHHHHH
Confidence 99888776543
No 35
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.28 E-value=0.033 Score=54.72 Aligned_cols=139 Identities=12% Similarity=-0.018 Sum_probs=77.9
Q ss_pred eeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe--eehHHHHHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE--HRLIDDMVA 258 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~--~~~VDa~~~ 258 (348)
..+|.+.+.+-++.+.+.-+ ..|=..+.=..+.=. .|+| +|.. .+. -++.++ .-++... ..=-|.+..
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~PrIaV~gLNPHAGE--~G~~G~EE~-iI~PAi~~~~~---~~g~~~~~GP~paDt~F~ 229 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-FKKIGVLGLNPHAGD--NGVIGGEEE-EIKKAIKKANQ---FLGFEIFFGPLVPDSAFT 229 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-CCCEEEEeeCCCCCC--CCCCCcchH-HHHHHHHHHHH---hcCCCcccCCcCchhhcc
Confidence 35788888888877766443 222122222233322 4566 4332 221 112210 0133333 555566544
Q ss_pred HHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCce-eeecCCcccCCCCcccccCCC-CCcChhHHH
Q 018978 259 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGE-TSTNSIASI 335 (348)
Q Consensus 259 ~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~-~fEp~HGSApd~~~~~iaGk~-i~ANP~a~I 335 (348)
+-.+ .+| ++||. | =|.+--=.-.+++--+.|+-- +.+. ---|-||||.| ||||| + |||.+|+
T Consensus 230 ~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvTl-GLP~iRTSpDHGTAfD-----IAGkg~~-A~~~S~~ 294 (307)
T PRK03946 230 PNKR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVSL-NLPILRTSVDHGTAFD-----IAYKNAK-ANTKSYL 294 (307)
T ss_pred cccc--cCCCEEEEC--c----cccCchhheeeccCcceEEec-CCCEeEecCCCCchhh-----hcCCCCc-CCHHHHH
Confidence 4332 578 77763 3 245544455566666667631 1122 23578999999 99999 9 9999999
Q ss_pred HHHHHHHHh
Q 018978 336 FAWSRGLAH 344 (348)
Q Consensus 336 lS~ammL~~ 344 (348)
-+.-+..+.
T Consensus 295 ~Ai~lA~~~ 303 (307)
T PRK03946 295 NAIKYAINL 303 (307)
T ss_pred HHHHHHHHH
Confidence 888776654
No 36
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.19 E-value=0.032 Score=55.36 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=82.6
Q ss_pred eeeChHHHHHHHHHHHHHHHhCC--C-CEE-EEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQKK--W-PLY-LSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VDa 255 (348)
..+|.+.+.+.++.+.+.-+.-+ + |+- +.=..+.=. .|+| +|..+.+. -++.+. .++.++ ..=-|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~g~~v~GP~paDt 250 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQE----MGINVEGPVPADS 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchh
Confidence 35899999999999988776433 2 332 233333333 5677 44433321 112211 333333 344555
Q ss_pred HHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCc-eeeecCCcccCCCCcccccCCCCCcChhH
Q 018978 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (348)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~-~~fEp~HGSApd~~~~~iaGk~i~ANP~a 333 (348)
+..+-.+ ++| ++||. | =|.+-.=.-.+++--+.|+-- +.+ ----|-||||.| |||||+ |||.+
T Consensus 251 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkg~-A~~~S 315 (332)
T PRK03743 251 VFHLALQ--GRYDAVLSL--Y----HDQGHIATKTLDFERTIAITN-GLPFLRTSVDHGTAFD-----IAGTGK-ASSVS 315 (332)
T ss_pred hcccccc--cCCCEEEEc--c----cccCChhheecccCCceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHH
Confidence 4433333 468 66663 3 356555556666666777731 112 233578999999 999999 99999
Q ss_pred HHHHHHHHHHh
Q 018978 334 SIFAWSRGLAH 344 (348)
Q Consensus 334 ~IlS~ammL~~ 344 (348)
|+-+.-+..+.
T Consensus 316 ~~~Ai~lA~~~ 326 (332)
T PRK03743 316 MEEAILLAAKY 326 (332)
T ss_pred HHHHHHHHHHH
Confidence 99888776553
No 37
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=94.08 E-value=0.033 Score=54.89 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=38.7
Q ss_pred hhhhhhcCccccccccccCCCCCc-eeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHH
Q 018978 281 DFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLA 343 (348)
Q Consensus 281 Dlaa~l~GslGlapsanig~~~~~-~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~ 343 (348)
|.+-.-.-=+|+--|.|+--. .+ .---|-||||.| |||||| |||.+++-+..+.-+
T Consensus 268 DQgliplK~l~Fd~~VNvtlG-LPfiRTS~DHGTAfD-----iAgkGi-A~~~S~~~Ai~lA~~ 324 (332)
T COG1995 268 DQGLIPLKYLGFDRGVNVTLG-LPFIRTSVDHGTAFD-----IAGKGI-ADPGSLIAAIKLAAK 324 (332)
T ss_pred cccchhhhhhccccceEEecC-CCeeeecCCccchhh-----hhcCCc-CCchHHHHHHHHHHH
Confidence 444444455566667777421 11 233578999999 999999 999999887766544
No 38
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.06 E-value=0.035 Score=55.00 Aligned_cols=139 Identities=12% Similarity=-0.002 Sum_probs=82.6
Q ss_pred eeeChHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLID 254 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VD 254 (348)
..+|.+.+.+.++.+.+.-++. + + |+- +.=..+.=. .|+| +|..+.+. -++.+. .++.++ ..=-|
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~----~Gi~v~GP~paD 245 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARA----AGIDARGPYPAD 245 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCCccCCCCch
Confidence 4589999999999988876633 3 2 332 222333333 5777 55443331 112211 233322 44456
Q ss_pred HHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCc-eeeecCCcccCCCCcccccCCCCCcChh
Q 018978 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSI 332 (348)
Q Consensus 255 a~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~-~~fEp~HGSApd~~~~~iaGk~i~ANP~ 332 (348)
.+..+..+ +.| ++||. | =|.+-.-.-.+++--+.|+-- +.+ ----|-||||.| |||||+ |||.
T Consensus 246 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkg~-A~~~ 310 (329)
T PRK01909 246 TLFQPRYL--EDADCVLAM--F----HDQGLPVLKYATFGEGINVTL-GLPIIRTSVDHGTALD-----LAGTGR-ADPG 310 (329)
T ss_pred hhcccccc--cCCCEEEEc--c----ccccchhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHH
Confidence 55444433 468 66663 3 356555566666667777731 112 223578999999 999999 9999
Q ss_pred HHHHHHHHHHH
Q 018978 333 ASIFAWSRGLA 343 (348)
Q Consensus 333 a~IlS~ammL~ 343 (348)
+|+-+.-+..+
T Consensus 311 S~~~Ai~lA~~ 321 (329)
T PRK01909 311 SMIAAIDTAVT 321 (329)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
No 39
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=93.97 E-value=0.038 Score=54.94 Aligned_cols=140 Identities=18% Similarity=0.095 Sum_probs=80.1
Q ss_pred eeeChHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLID 254 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VD 254 (348)
..+|.+.+.+.++.+.+.-++. + + |+- +.=..+.=. .|+| +|..+.+. -++.+. .++... ..=-|
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~Gi~v~GP~paD 254 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRA----EGIDARGPLPAD 254 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCCccCCCCch
Confidence 3589999999999998876632 3 2 333 222233332 4677 44433331 112211 222221 33344
Q ss_pred HHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCce-eeecCCcccCCCCcccccCCCCCcChh
Q 018978 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSI 332 (348)
Q Consensus 255 a~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~-~fEp~HGSApd~~~~~iaGk~i~ANP~ 332 (348)
.+..+-.+ ..| ++|+. | =|.+-.-.-.+|+--+.|+-- +.+. ---|-||||.| |||||+ |||.
T Consensus 255 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkg~-A~~~ 319 (336)
T PRK05312 255 TMFHAAAR--ATYDAAICM--Y----HDQALIPIKTLDFDGGVNVTL-GLPFIRTSPDHGTAFD-----IAGKGI-ARPD 319 (336)
T ss_pred hhcccccc--cCCCEEEEc--c----cccCChhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHH
Confidence 44333222 468 66663 3 245555555666666777631 1122 23578999999 999999 9999
Q ss_pred HHHHHHHHHHHh
Q 018978 333 ASIFAWSRGLAH 344 (348)
Q Consensus 333 a~IlS~ammL~~ 344 (348)
+|+-+.-+..+.
T Consensus 320 S~~~Ai~lA~~~ 331 (336)
T PRK05312 320 SLIAALRLAAQM 331 (336)
T ss_pred HHHHHHHHHHHH
Confidence 999888776553
No 40
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=93.91 E-value=0.039 Score=54.96 Aligned_cols=143 Identities=11% Similarity=-0.023 Sum_probs=82.4
Q ss_pred eeeChHHHHHHHHHHHHHHHh-CC--C-CEE-EEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQ-KK--W-PLY-LSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLID 254 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~-r~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VD 254 (348)
..+|.+.+.+-++.+.+.-++ -+ + |+- +.=....-. .|+| +|..+.+. -++.|.+- +++.+. ..=-|
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g--~g~~v~GP~paD 254 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKN--PDIQLLGPIPPD 254 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcC--CCceeeCCCCch
Confidence 357888888888887776553 22 2 333 222233332 4677 44333321 11222210 234433 44456
Q ss_pred HHHHHHHhC------CCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCcee-eecCCcccCCCCcccccCCC
Q 018978 255 DMVAYALKS------EGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE-AEAAHGTVTRHYRVHQKGGE 326 (348)
Q Consensus 255 a~~~~lv~~------P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~-fEp~HGSApd~~~~~iaGk~ 326 (348)
.+..+-.+. .+.| ++||. | =|.+-.=.--+++--+.|+-- +.+.+ --|-||||.| |||||
T Consensus 255 t~F~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkg 322 (345)
T PRK02746 255 TCWVSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTTI-GLPFIRTSPDHGTAFD-----IAGKG 322 (345)
T ss_pred hhccccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEec-CCCeeEeCCCCcchhh-----hhcCC
Confidence 655554442 2468 77763 3 255555556666667777731 11222 3578999999 99999
Q ss_pred CCcChhHHHHHHHHHHH
Q 018978 327 TSTNSIASIFAWSRGLA 343 (348)
Q Consensus 327 i~ANP~a~IlS~ammL~ 343 (348)
+ |||.+|+-+.-+..+
T Consensus 323 ~-A~~~S~~~Ai~lA~~ 338 (345)
T PRK02746 323 I-ARPQSMKAAIKLAWE 338 (345)
T ss_pred C-CCHHHHHHHHHHHHH
Confidence 9 999999988877654
No 41
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=93.81 E-value=0.043 Score=54.21 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=79.1
Q ss_pred eeeChHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHH
Q 018978 184 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLID 254 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VD 254 (348)
..+|.+.+.+-++.+.+.-++. + + |+- +.=..+.=. .|+| +|..+.+. -++.|. .++.++ ..--|
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~G~~v~GP~paD 242 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRA----EGIDLIGPLPAD 242 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCch
Confidence 3589999999999888877643 3 2 332 222333332 4677 44333321 112211 223222 33344
Q ss_pred HHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCcee-eecCCcccCCCCcccccCCCCCcChh
Q 018978 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE-AEAAHGTVTRHYRVHQKGGETSTNSI 332 (348)
Q Consensus 255 a~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~-fEp~HGSApd~~~~~iaGk~i~ANP~ 332 (348)
.+..+-.+ +.| ++||. | =|.+-.=.-.+|+--+.|+-- +.+.+ --|-||||.| |||||+ |||.
T Consensus 243 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLPiiRTS~DHGTAfD-----IAGkg~-A~~~ 307 (320)
T TIGR00557 243 TLFHPAAL--AKYDAVLAM--Y----HDQGLIPLKYLGFDEGVNVTL-GLPFIRTSPDHGTAFD-----IAGKGK-ADPG 307 (320)
T ss_pred hhcccccc--cCCCEEEEC--c----ccccchhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHH
Confidence 43333222 468 66663 3 245555555666666777631 11222 3578999999 999999 9999
Q ss_pred HHHHHHHHHHH
Q 018978 333 ASIFAWSRGLA 343 (348)
Q Consensus 333 a~IlS~ammL~ 343 (348)
+|+-+..+..+
T Consensus 308 S~~~Ai~~A~~ 318 (320)
T TIGR00557 308 SLIAAIKLAIE 318 (320)
T ss_pred HHHHHHHHHHH
Confidence 99888776644
No 42
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=92.99 E-value=0.65 Score=49.24 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=90.8
Q ss_pred eeeeeeeChHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-hHHHHH
Q 018978 180 VALSMYNTDESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV 257 (348)
Q Consensus 180 ~~~~~~~Tr~~~eRiar~AFe~A~~r~k~-Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~~~-~VDa~~ 257 (348)
+|-.+-.-..-++-+++.|-+.||..+.+ |.-.|+. +..| .+....| +.|.......++++.-+ -+|++-
T Consensus 451 IwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~---RAHD---a~lI~kV--~~yL~~hdt~gldi~Im~P~~A~~ 522 (735)
T PF03971_consen 451 IWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDEN---RAHD---AELIKKV--EKYLKDHDTSGLDIRIMSPVEATR 522 (735)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TT---SHHH---HHHHHHH--HHHHTTS--TT--EEEE-HHHHHH
T ss_pred chhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCC---CccH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHH
Confidence 44444445677899999999999998866 4444432 2223 3455555 35665556667777776 455555
Q ss_pred HHHHhC-CCCc-EEEeCCcccchHHhhhhhhc-----CccccccccccCCCCCceeeec-CCcccCCCCcccccCCCCCc
Q 018978 258 AYALKS-EGGY-VWACKNYDGDVQSDFLAQGF-----GSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETST 329 (348)
Q Consensus 258 ~~lv~~-P~~F-Viv~~NlfGDILSDlaa~l~-----GslGlapsanig~~~~~~~fEp-~HGSApd~~~~~iaGk~i~A 329 (348)
.-|-+- -+.- +=||-|..=|.|+||.--|= -=|.+.|=.| .+ +|||. ..||||+|..+.+.---.+=
T Consensus 523 ~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhLRW 597 (735)
T PF03971_consen 523 FSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---GG--GLFETGAGGSAPKHVQQFVEENHLRW 597 (735)
T ss_dssp HHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S---EEEES-SS---HHHHHHHCCCS----
T ss_pred HHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceeccCCCCCccHHHHHHHHcCcccc
Confidence 444332 2333 88999999999999986551 1123333333 12 79998 57899998877554333447
Q ss_pred ChhHHHHHHHHHHHhhhc
Q 018978 330 NSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 330 NP~a~IlS~ammL~~lg~ 347 (348)
+.+|-+|+++--|+||++
T Consensus 598 DSLGEFlALa~Sle~l~~ 615 (735)
T PF03971_consen 598 DSLGEFLALAVSLEHLAQ 615 (735)
T ss_dssp -THHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 899999999999999985
No 43
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=91.86 E-value=0.088 Score=53.59 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=18.9
Q ss_pred CCCEEEEeccc-Ccccccccee
Q 018978 127 TKPICIGRHAF-GDQYRATDTV 147 (348)
Q Consensus 127 ~~divivREnt-eG~Y~g~e~~ 147 (348)
++|++|+|||| ||+|+|.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 47999999999 9999999863
No 44
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=90.72 E-value=1.7 Score=46.19 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=95.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-hHHHHHHHHHhC-
Q 018978 187 TDESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMVAYALKS- 263 (348)
Q Consensus 187 Tr~~~eRiar~AFe~A~~r~k~-Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~~~-~VDa~~~~lv~~- 263 (348)
-..-++.+++.|-+.||..+.+ |.-.|+. +..|. +....| +.|.......++.++-+ .++++-.-|=+-
T Consensus 462 KD~pI~DWVkLAV~Rar~sg~pavFWLD~~---RaHDa---~lI~kV--~~yL~~hdt~gldi~Im~p~~A~~~slerir 533 (741)
T TIGR00178 462 KDAPIQDWVKLAVTRARATGTPAVFWLDPA---RAHDA---QLIKKV--ETYLKDHDTEGLDIQILSPVEATRFSLARIR 533 (741)
T ss_pred cCchHHHHHHHHHHHHHhcCCCeEEEeCCC---chhHH---HHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHH
Confidence 3556888999999999998865 4444432 22233 333444 24543334457777766 455554444332
Q ss_pred CCCc-EEEeCCcccchHHhhhhhhcC-----ccccccccccCCCCCceeeec-CCcccCCCCcccccCCCCCcChhHHHH
Q 018978 264 EGGY-VWACKNYDGDVQSDFLAQGFG-----SLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETSTNSIASIF 336 (348)
Q Consensus 264 P~~F-Viv~~NlfGDILSDlaa~l~G-----slGlapsanig~~~~~~~fEp-~HGSApd~~~~~iaGk~i~ANP~a~Il 336 (348)
-+.- +=||-|..=|.|+||.--|== =|.+.|=.| .+ +|||. ..||||+|..+.+.---.+=+.+|-+|
T Consensus 534 ~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhLRWDSLGEFl 608 (741)
T TIGR00178 534 RGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GLFETGAGGSAPKHVQQFLEENHLRWDSLGEFL 608 (741)
T ss_pred cCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceecCCCCCCccHHHHHHHHcCcccccchhhHH
Confidence 2233 889999999999999866521 122223222 12 79998 568999998775543333478999999
Q ss_pred HHHHHHHhhhc
Q 018978 337 AWSRGLAHRYK 347 (348)
Q Consensus 337 S~ammL~~lg~ 347 (348)
+++--|+||++
T Consensus 609 ALa~Sle~la~ 619 (741)
T TIGR00178 609 ALAASLEHLGN 619 (741)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 45
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=80.60 E-value=9.9 Score=39.93 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=94.2
Q ss_pred eeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-hHHHHHH
Q 018978 180 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMVA 258 (348)
Q Consensus 180 ~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~~~-~VDa~~~ 258 (348)
+|-.+......++.+++.|.+.||..+-++.+---.+ +-.+. +....| +.|..--+..+..+.-+ .+.+|-.
T Consensus 457 iwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~--Rahd~---~li~kV--~~yLkdhdt~GldI~Ilsp~ea~~~ 529 (744)
T COG2838 457 IWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY--RAHDK---ELIKKV--EAYLKDHDTNGLDIQILSPVEAMRY 529 (744)
T ss_pred HHHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcC--ccchH---HHHHHH--HHHhhhcCCCCcceEEecHHHHHHH
Confidence 3333455677789999999999998886644422222 22232 333444 24432222234444433 3455444
Q ss_pred HHHh--CCCCcEEEeCCcccchHHhhhhhhcCccccccccccC---C--CCCceeeec-CCcccCCCCcccccCCCCCcC
Q 018978 259 YALK--SEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC---P--DGKTIEAEA-AHGTVTRHYRVHQKGGETSTN 330 (348)
Q Consensus 259 ~lv~--~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig---~--~~~~~~fEp-~HGSApd~~~~~iaGk~i~AN 330 (348)
.|.+ +-+.-+=||-|..-|.|+||.--| -|..||-.= | .+ -+|||. ..||||+|..+..----.+=+
T Consensus 530 sl~rl~~G~DtIsvTGNvLRDYlTDLFPIl----ELGTSAKMLSiVPlmaG-GgmfETGAGGSAPKhVqQ~~eENhLRWD 604 (744)
T COG2838 530 SLERLRRGEDTISVTGNVLRDYLTDLFPIL----ELGTSAKMLSIVPLMAG-GGMFETGAGGSAPKHVQQLVEENHLRWD 604 (744)
T ss_pred HHHHHHcCCceeEecchHHHHHHhhhhhHh----hcccccchheeeeeccC-CceeecCCCCCCcHHHHHHHHhcccchh
Confidence 4433 322237799999999999998665 222333220 0 11 179998 568999987764332223478
Q ss_pred hhHHHHHHHHHHHhhhc
Q 018978 331 SIASIFAWSRGLAHRYK 347 (348)
Q Consensus 331 P~a~IlS~ammL~~lg~ 347 (348)
.++-+|+++--|+|+|.
T Consensus 605 SLGEFLALa~sle~~~~ 621 (744)
T COG2838 605 SLGEFLALAASLEHLGN 621 (744)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 89999999999999984
No 46
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=58.04 E-value=5.8 Score=40.68 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=16.7
Q ss_pred CCCEEEEeccc-Ccccccc
Q 018978 127 TKPICIGRHAF-GDQYRAT 144 (348)
Q Consensus 127 ~~divivREnt-eG~Y~g~ 144 (348)
++|++|+|||| ||+|++.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 47999999999 9999998
No 47
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=48.72 E-value=14 Score=36.76 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=18.9
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 018978 8 VANPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 8 m~~~I~vi~GD--GIGpEv~~~~~ 29 (348)
|+++|++--|| ||||||+-.++
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 67889999999 99999887664
No 48
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=43.69 E-value=13 Score=34.49 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHhCCCCc-EE-EeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCCCC
Q 018978 260 ALKSEGGY-VW-ACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 327 (348)
Q Consensus 260 lv~~P~~F-Vi-v~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk~i 327 (348)
=|++|+.+ || ||+- ||..|-+|-|+.+ +.|-|.|||--| +.|+=.
T Consensus 140 rvk~~ewl~~igVCTh----------------LGCVp~~~AGd~g--g~~CPCHGSHYd-----asGRIr 186 (210)
T KOG1671|consen 140 RVKKPEWLVVIGVCTH----------------LGCVPIANAGDYG--GYYCPCHGSHYD-----ASGRIR 186 (210)
T ss_pred hccCcceEEEEeeecc----------------ccccccccccccC--ceeccccccccc-----ccCcee
Confidence 46777877 33 4543 4888999999765 799999999999 877644
No 49
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=37.14 E-value=1.9e+02 Score=26.13 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=52.2
Q ss_pred cEEEECC-CCchHHHHHHHHHHHhcCCCceEEEEEe-c---chh----hHhccCCCCcHHH----HHHHHhcCeeeecCC
Q 018978 11 PIVEMDG-DEMTRVFWKSIKDKLIFPFLELDIKYFD-L---GLP----NRDATDDKVTVES----AEATLKYNVAIKCAT 77 (348)
Q Consensus 11 ~I~vi~G-DGIGpEv~~~~~~~~~~~~~~i~~~~~~-~---G~~----~~~~~g~~lp~~~----l~~~~~~da~lkg~~ 77 (348)
.|...|= +|-.-.+.+++++-+.+.+.+.+...+. . +.. ++.+....+++|+ ++.++++|++++|.
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs- 83 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS- 83 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC-
Confidence 3444444 8888999999987776667766655543 1 111 1222225566544 45599999999873
Q ss_pred CCCCchhhhHHHhhhcCCCcchHHhhhcCc
Q 018978 78 ITPDEARVKEFVLKQMWKSPNGTIRNILNG 107 (348)
Q Consensus 78 ~~p~~~~~~~~~l~~~~~s~~~~lR~~ldl 107 (348)
|.. |.++..+++.-+|-
T Consensus 84 --Pvy-----------~g~vsa~~K~fiDR 100 (207)
T COG0655 84 --PVY-----------FGNVSAQMKAFIDR 100 (207)
T ss_pred --Cee-----------cCCchHHHHHHHhh
Confidence 432 44556788888885
No 50
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=35.10 E-value=43 Score=26.35 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCEEEEe
Q 018978 187 TDESIRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 187 Tr~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
..+.+++.+++|+++|+..+.+|+++|
T Consensus 11 ~~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 11 GSEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 456678999999999999887776655
No 51
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=33.52 E-value=34 Score=34.24 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=17.9
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 018978 8 VANPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 8 m~~~I~vi~GD--GIGpEv~~~~~ 29 (348)
|..+|++-.|| ||||||+-.++
T Consensus 2 ~~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 2 MMRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCCeEEEeCCCCcchHHHHHHHHH
Confidence 44689999998 99999887664
No 52
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=33.07 E-value=42 Score=33.73 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=19.0
Q ss_pred cccccEEEECCC--CchHHHHHHHH
Q 018978 7 KVANPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 7 ~m~~~I~vi~GD--GIGpEv~~~~~ 29 (348)
.|..+|++-.|| ||||||+-.++
T Consensus 7 ~~~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 7 DPRPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCCCcEEEeCCCCcchHHHHHHHHH
Confidence 355689999998 99999987765
No 53
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=32.63 E-value=37 Score=33.90 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=17.8
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 018978 8 VANPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 8 m~~~I~vi~GD--GIGpEv~~~~~ 29 (348)
|+.+|++--|| ||||||+-.++
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 34579999998 99999987664
No 54
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.88 E-value=81 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 018978 189 ESIRAFAEASMNTAYQKKWPLYLSTKNT 216 (348)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~KaN 216 (348)
+.+++++++|+.+|++.+.+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEEe
Confidence 5689999999999998877877766433
No 55
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=30.32 E-value=41 Score=33.60 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=16.9
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 018978 10 NPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~~ 29 (348)
.+|++-.|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999998 99999887664
No 56
>PRK15005 universal stress protein F; Provisional
Probab=27.24 E-value=84 Score=25.85 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 018978 191 IRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 191 ~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
+++.+++|+++|++.+.+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 68899999999998877777654
No 57
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.01 E-value=1.4e+02 Score=30.56 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeC
Q 018978 192 RAFAEASMNTAYQKKWPLYLSTK 214 (348)
Q Consensus 192 eRiar~AFe~A~~r~k~Vt~v~K 214 (348)
-|++|..|++|+++.-.+.++|-
T Consensus 230 aRlVRelF~lArekaPsIIFiDE 252 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFIDE 252 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEec
Confidence 48999999999986555666553
No 58
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=25.93 E-value=62 Score=32.35 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=16.6
Q ss_pred cEEEECCC--CchHHHHHHHH
Q 018978 11 PIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 11 ~I~vi~GD--GIGpEv~~~~~ 29 (348)
+|++--|| ||||||+-.++
T Consensus 7 ~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 7 QIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred eEEEeCCCCcchHHHHHHHHH
Confidence 78999998 99999987775
No 59
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=25.78 E-value=94 Score=30.86 Aligned_cols=34 Identities=9% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 018978 196 EASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (348)
Q Consensus 196 r~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key 237 (348)
.||||+|+ ||-+|.++- | +.+...++..|+. +.|
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~-~~~ 97 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIE-EKY 97 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHH-HHh
Confidence 46999998 687788765 4 5677888888887 478
No 60
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=24.75 E-value=77 Score=24.48 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 018978 190 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (348)
Q Consensus 190 ~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key 237 (348)
-..++++.|+++|++++.||.. +|..-...+++= .+|
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p---------~C~y~~~~~~~h--pey 75 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVP---------TCSYVAKYFRRH--PEY 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE---------TSHHHHHHHHH---GGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEE---------ECHHHHHHHHhC--ccc
Confidence 3778999999999999988764 466666666553 366
No 61
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=24.59 E-value=57 Score=32.58 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=14.2
Q ss_pred ccEEEECCC--CchHHHH
Q 018978 10 NPIVEMDGD--EMTRVFW 25 (348)
Q Consensus 10 ~~I~vi~GD--GIGpEv~ 25 (348)
.+|++-.|| ||||||+
T Consensus 4 ~~iAit~GDPaGIGPEi~ 21 (332)
T COG1995 4 PRIAITMGDPAGIGPELV 21 (332)
T ss_pred CceEecCCCcccCCHHHH
Confidence 589999999 9999993
No 62
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=23.69 E-value=1.1e+02 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=24.2
Q ss_pred eeeChHHHHHHHHHHHHHHHhCCCCEEE
Q 018978 184 MYNTDESIRAFAEASMNTAYQKKWPLYL 211 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~k~Vt~ 211 (348)
...|.+.+++|++.|++-|++.+..||+
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~g~~Vtv 33 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQLGVPVTV 33 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3578999999999999999999887663
No 63
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=23.49 E-value=58 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=21.4
Q ss_pred ccccccc-cCCCCCceeeecCCcccCCCCcccccCCCCCcCh
Q 018978 291 GLMTSVL-VCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNS 331 (348)
Q Consensus 291 Glapsan-ig~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP 331 (348)
|-.|+.| -+.++ .+|-|.|||..| .+|+-+ -.|
T Consensus 112 GC~~~~~~~~~~~--~~~CPCHGS~yd-----~~g~vv-~GP 145 (177)
T COG0723 112 GCTVPWNNAGAEG--GFFCPCHGSRYD-----PDGGVV-KGP 145 (177)
T ss_pred CCccCcccCCCCC--eEEccCCCCeEc-----CCCCee-CCC
Confidence 5555554 22233 689999999999 777654 444
No 64
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=23.41 E-value=52 Score=34.54 Aligned_cols=12 Identities=8% Similarity=-0.114 Sum_probs=10.2
Q ss_pred CCEEEE----------ecccCc
Q 018978 128 KPICIG----------RHAFGD 139 (348)
Q Consensus 128 ~diviv----------REnteG 139 (348)
+|++|+ |||||+
T Consensus 212 iD~vi~~~g~~~~~~~rEnte~ 233 (483)
T PLN03065 212 TDTVIKGPGKLKMVFVPEDGNA 233 (483)
T ss_pred eEEEEecCCeeEEEeecCCCCC
Confidence 588887 999997
No 65
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=23.06 E-value=1.5e+02 Score=22.84 Aligned_cols=26 Identities=15% Similarity=-0.070 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEe
Q 018978 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 188 r~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
...+.++.++|.++|..++.++|++|
T Consensus 9 ~~~~~~~l~~a~~~a~~~~~~i~~l~ 34 (130)
T cd00293 9 SEESERALRWAARLARRLGAELVLLH 34 (130)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 56688899999999999888888765
No 66
>PRK09982 universal stress protein UspD; Provisional
Probab=22.51 E-value=87 Score=26.28 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeC
Q 018978 190 SIRAFAEASMNTAYQKKWPLYLSTK 214 (348)
Q Consensus 190 ~~eRiar~AFe~A~~r~k~Vt~v~K 214 (348)
.+++.+++|+++|++.+-+|+++|=
T Consensus 15 ~s~~al~~A~~lA~~~~a~l~llhV 39 (142)
T PRK09982 15 EDALLVNKALELARHNDAHLTLIHI 39 (142)
T ss_pred chHHHHHHHHHHHHHhCCeEEEEEE
Confidence 3688999999999988888888773
No 67
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=22.47 E-value=2.7e+02 Score=25.18 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=46.0
Q ss_pred cEEEECC----CCchHHHHHHHHHHHhcCCCceEEEEE-ecchhhHh--ccCCCCcHHHHHHHHhcCeeeecCCCCCCch
Q 018978 11 PIVEMDG----DEMTRVFWKSIKDKLIFPFLELDIKYF-DLGLPNRD--ATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (348)
Q Consensus 11 ~I~vi~G----DGIGpEv~~~~~~~~~~~~~~i~~~~~-~~G~~~~~--~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~ 83 (348)
+|++|-| .+--.-+.+.+.+.+.+.+.++++.+. ++-.+... ..+.+--.+..+.++++|+++.+ +|..
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~---tP~Y- 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA---TPVY- 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE---CCcc-
Confidence 4666665 344445666666545545655543321 22111111 12223334566888899999876 4533
Q ss_pred hhhHHHhhhcCCCcchHHhhhcCce
Q 018978 84 RVKEFVLKQMWKSPNGTIRNILNGT 108 (348)
Q Consensus 84 ~~~~~~l~~~~~s~~~~lR~~ldly 108 (348)
|.|....|+.-||..
T Consensus 78 ----------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ----------KASFSGALKTLLDLL 92 (191)
T ss_pred ----------CCCCCHHHHHHHHhC
Confidence 455667788888864
No 68
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=21.37 E-value=82 Score=26.05 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q 018978 189 ESIRAFAEASMNTAYQKKWPLYLSTK 214 (348)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (348)
+.+++.+++|+++|+..+.+|+++|=
T Consensus 10 ~~s~~al~~a~~~a~~~~~~l~ll~v 35 (146)
T cd01989 10 KKSKNALKWALDNLATKGQTIVLVHV 35 (146)
T ss_pred cccHHHHHHHHHhccCCCCcEEEEEe
Confidence 35788999999999887778877763
No 69
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=21.23 E-value=3.8e+02 Score=27.25 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=54.6
Q ss_pred eChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEe-----eehHHHHHHHH
Q 018978 186 NTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-----HRLIDDMVAYA 260 (348)
Q Consensus 186 ~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~-----~~~VDa~~~~l 260 (348)
|-+..+++||..+ +..=.+|.|+.|--.+..-..+++ .++- |+|+++ +.+..-.+++=
T Consensus 105 y~es~ar~ia~~s-------~~~kivvekstvpv~aaesi~~il----~~n~------~~i~fqilsnpeflaegtaikd 167 (481)
T KOG2666|consen 105 YWESAARMIADVS-------VSDKIVVEKSTVPVKAAESIEKIL----NHNS------KGIKFQILSNPEFLAEGTAIKD 167 (481)
T ss_pred HHHHHHHHHHHhc-------cCCeEEEeeccccchHHHHHHHHH----hcCC------CCceeEeccChHHhcccchhhh
Confidence 4566777777665 434467899998743332333333 2233 788877 34556666666
Q ss_pred HhCCCCc-E---------------------------EEeCCcccchHHhhhhhh
Q 018978 261 LKSEGGY-V---------------------------WACKNYDGDVQSDFLAQG 286 (348)
Q Consensus 261 v~~P~~F-V---------------------------iv~~NlfGDILSDlaa~l 286 (348)
+.||.+. + |+|+|++--=||-|+|.-
T Consensus 168 l~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 168 LFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred hcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 6776653 1 799999999999998753
No 70
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=20.06 E-value=1.6e+02 Score=29.54 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHh--CCCCEEEE-----eCCCcccccchhHHHHHHHHHHhhhhcccc-CCCceEeee----hHHHHHHHHHhCC
Q 018978 197 ASMNTAYQ--KKWPLYLS-----TKNTILKKYDGRFKDIFQEVYEANWKSKFE-AAGIWYEHR----LIDDMVAYALKSE 264 (348)
Q Consensus 197 ~AFe~A~~--r~k~Vt~v-----~KaNVl~~~~g~f~~~~~eva~key~~~~~-~p~I~~~~~----~VDa~~~~lv~~P 264 (348)
-.|.+|.- .||-|.++ ||-|-.. -...|.++++|+| |+||+... .-+.++-++ ++....|.-++.|
T Consensus 239 dgflL~EiG~sGKLVaLaVidEkhk~nns~-eh~~~~ki~eEaa-kd~Rd~pdfh~dFQF~hlDGnD~~nqilM~als~P 316 (468)
T KOG4277|consen 239 DGFLLAEIGASGKLVALAVIDEKHKFNNSS-EHREFHKIAEEAA-KDLRDHPDFHNDFQFAHLDGNDLANQILMAALSEP 316 (468)
T ss_pred ccchHHHhCcCCceEEEEEeccccccCCcc-hhHHHHHHHHHHH-HHHHhChhhhhhceeeccchhHHHHHHHHHhhcCC
Confidence 35666653 24544432 5664432 2456999999998 69977521 123444444 4555667777889
Q ss_pred CCcEEEeCCc
Q 018978 265 GGYVWACKNY 274 (348)
Q Consensus 265 ~~FViv~~Nl 274 (348)
.-||.=++|.
T Consensus 317 ~l~i~Ntsnq 326 (468)
T KOG4277|consen 317 HLFIFNTSNQ 326 (468)
T ss_pred eEEEEecCch
Confidence 9888888884
Done!