BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018979
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316
S+MH R ++ +E+ I ++ IF L M+ +QG++ I+ N++ +V+ A QL
Sbjct: 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61
Query: 317 RYLN 320
R N
Sbjct: 62 RAAN 65
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73
Query: 317 RYLNSISSNR 326
+ + S R
Sbjct: 74 KAVKYQSKAR 83
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS--- 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264
Query: 314 QLVRY 318
+ V+Y
Sbjct: 265 KAVKY 269
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 59
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 61
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 4 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 60
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 34.7 bits (78), Expect = 0.077, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 61
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 70
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 269 VESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
+E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 21 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 65
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313
S + +R + +E++I EL ++F +A +V QGE+ RI+ N++ + VE A S
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 61
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312
+ +R + +E++I EL ++F +A +V QGE+ RI+ N++ + +E A+
Sbjct: 21 IEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAK 74
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316
+ R + + +E ++ EL +FT ++T+V+ QGE+ RI+ +++ + V+ A Q+V
Sbjct: 212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVV 269
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 189 ESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESL 237
+ST R R AT DG S + +S R+ PS Q DGE +
Sbjct: 121 DSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERI 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,768,258
Number of Sequences: 62578
Number of extensions: 197069
Number of successful extensions: 304
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 13
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)