Query 018979
Match_columns 348
No_of_seqs 222 out of 1234
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 1.9E-61 4.1E-66 430.1 33.8 307 8-348 1-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 100.0 6.6E-37 1.4E-41 274.9 24.8 289 10-347 2-301 (305)
3 KOG0810 SNARE protein Syntaxin 100.0 1.2E-29 2.6E-34 234.9 25.9 251 57-345 32-287 (297)
4 KOG0811 SNARE protein PEP12/VA 99.9 2.9E-21 6.3E-26 176.1 26.9 225 58-328 14-244 (269)
5 COG5074 t-SNARE complex subuni 99.9 1.2E-21 2.6E-26 170.4 22.4 238 61-344 21-268 (280)
6 COG5325 t-SNARE complex subuni 99.9 1.4E-21 3E-26 174.9 23.4 240 54-344 27-275 (283)
7 KOG3894 SNARE protein Syntaxin 99.8 1.3E-17 2.7E-22 152.3 27.6 304 11-346 1-313 (316)
8 PF05739 SNARE: SNARE domain; 99.4 1.2E-12 2.5E-17 94.6 10.2 63 261-323 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.3 1.8E-11 3.8E-16 87.2 8.5 59 260-318 2-60 (60)
10 KOG3202 SNARE protein TLG1/Syn 99.2 9.7E-09 2.1E-13 92.4 24.5 217 60-334 5-222 (235)
11 smart00397 t_SNARE Helical reg 99.2 1.3E-10 2.7E-15 84.3 9.3 63 256-318 4-66 (66)
12 PF00804 Syntaxin: Syntaxin; 99.0 1.1E-08 2.3E-13 80.8 11.3 98 60-165 2-103 (103)
13 cd00179 SynN Syntaxin N-termin 98.9 9.8E-08 2.1E-12 81.0 16.2 126 60-187 1-130 (151)
14 smart00503 SynN Syntaxin N-ter 98.7 6.7E-07 1.5E-11 72.3 14.1 110 60-172 3-116 (117)
15 KOG3385 V-SNARE [Intracellular 97.9 9.5E-05 2.1E-09 58.5 8.7 81 263-344 35-115 (118)
16 PF10496 Syntaxin-18_N: SNARE- 97.6 0.00026 5.5E-09 54.4 6.9 64 11-86 1-64 (87)
17 PF11416 Sed5p: Integral membr 97.5 3.7E-05 8E-10 45.4 1.1 23 8-30 2-24 (29)
18 KOG0810 SNARE protein Syntaxin 97.5 0.036 7.7E-07 52.2 20.9 201 95-346 81-291 (297)
19 PF00957 Synaptobrevin: Synapt 97.4 0.0062 1.3E-07 46.8 12.3 52 264-315 3-54 (89)
20 KOG1666 V-SNARE [Intracellular 97.3 0.1 2.2E-06 46.1 25.1 90 256-346 127-216 (220)
21 KOG0811 SNARE protein PEP12/VA 97.2 0.01 2.2E-07 54.9 13.4 94 250-347 173-266 (269)
22 PF09753 Use1: Membrane fusion 97.1 0.012 2.6E-07 54.3 13.3 75 263-341 169-243 (251)
23 KOG0860 Synaptobrevin/VAMP-lik 97.0 0.015 3.3E-07 46.4 11.2 40 264-303 29-68 (116)
24 PF14523 Syntaxin_2: Syntaxin- 96.9 0.044 9.5E-07 43.0 13.3 97 70-174 1-100 (102)
25 COG5325 t-SNARE complex subuni 96.7 0.041 8.9E-07 50.4 12.6 90 252-345 190-279 (283)
26 KOG3251 Golgi SNAP receptor co 95.9 1.1 2.4E-05 39.8 24.5 188 70-330 8-195 (213)
27 PF03908 Sec20: Sec20; InterP 95.5 0.49 1.1E-05 36.5 11.8 60 285-345 29-88 (92)
28 COG5074 t-SNARE complex subuni 94.8 0.5 1.1E-05 42.4 11.2 85 256-341 184-268 (280)
29 KOG2678 Predicted membrane pro 94.0 1.4 3E-05 39.4 12.2 64 260-326 154-217 (244)
30 KOG3208 SNARE protein GS28 [In 93.8 4.7 0.0001 36.0 24.5 99 62-168 6-112 (231)
31 KOG3065 SNAP-25 (synaptosome-a 93.4 0.37 8.1E-06 44.8 8.1 56 262-317 216-271 (273)
32 PF09177 Syntaxin-6_N: Syntaxi 92.1 2.1 4.6E-05 33.2 9.6 91 62-156 2-95 (97)
33 PF12352 V-SNARE_C: Snare regi 91.8 3.6 7.7E-05 29.3 10.3 58 264-321 8-65 (66)
34 KOG0809 SNARE protein TLG2/Syn 89.8 2.7 5.8E-05 39.2 9.3 87 254-344 215-301 (305)
35 PF05478 Prominin: Prominin; 89.2 3.7 8E-05 44.4 11.4 66 263-334 356-421 (806)
36 PF09889 DUF2116: Uncharacteri 87.3 0.8 1.7E-05 32.3 3.3 28 314-344 27-54 (59)
37 PF00957 Synaptobrevin: Synapt 84.5 15 0.00033 27.7 11.6 19 258-276 25-43 (89)
38 KOG0860 Synaptobrevin/VAMP-lik 84.2 5.9 0.00013 31.8 7.2 14 303-316 71-84 (116)
39 PF10779 XhlA: Haemolysin XhlA 83.5 15 0.00032 26.8 10.0 50 292-344 20-69 (71)
40 PF09753 Use1: Membrane fusion 83.2 18 0.00039 33.2 11.2 73 268-344 167-242 (251)
41 PF09889 DUF2116: Uncharacteri 80.7 3.2 7E-05 29.3 4.0 11 332-342 38-48 (59)
42 PF03904 DUF334: Domain of unk 77.5 55 0.0012 29.5 13.2 29 258-286 65-93 (230)
43 KOG3850 Predicted membrane pro 76.6 78 0.0017 30.9 13.6 46 267-312 309-355 (455)
44 PHA02844 putative transmembran 74.9 3.5 7.6E-05 30.2 2.9 11 324-334 45-55 (75)
45 PHA03054 IMV membrane protein; 74.1 3.5 7.7E-05 29.8 2.7 11 324-334 45-55 (72)
46 PHA02819 hypothetical protein; 72.8 4.2 9.2E-05 29.5 2.9 11 324-334 43-53 (71)
47 KOG0859 Synaptobrevin/VAMP-lik 70.9 13 0.00027 32.8 5.9 34 264-297 125-158 (217)
48 PHA02650 hypothetical protein; 69.6 5.3 0.00011 29.6 2.8 7 324-330 46-52 (81)
49 PHA02975 hypothetical protein; 69.0 6.9 0.00015 28.2 3.2 13 323-335 40-52 (69)
50 KOG3202 SNARE protein TLG1/Syn 68.1 44 0.00094 30.5 9.1 28 273-303 136-163 (235)
51 PF05366 Sarcolipin: Sarcolipi 68.1 8.4 0.00018 22.6 2.9 24 323-346 3-26 (31)
52 PF06143 Baculo_11_kDa: Baculo 68.0 9.7 0.00021 28.8 4.0 13 312-324 19-31 (84)
53 PF04102 SlyX: SlyX; InterPro 66.8 41 0.00088 24.3 7.1 49 264-312 4-52 (69)
54 PF02346 Vac_Fusion: Chordopox 66.8 39 0.00084 23.6 6.6 44 265-308 2-45 (57)
55 PF14992 TMCO5: TMCO5 family 66.5 1.1E+02 0.0025 28.5 11.9 54 259-312 125-178 (280)
56 PF12575 DUF3753: Protein of u 66.4 5.4 0.00012 29.2 2.3 6 327-332 48-53 (72)
57 PRK10299 PhoPQ regulatory prot 65.6 8.2 0.00018 25.6 2.8 17 323-339 2-18 (47)
58 cd00179 SynN Syntaxin N-termin 64.1 66 0.0014 26.5 9.0 112 70-183 4-119 (151)
59 PF14715 FixP_N: N-terminal do 63.2 9.2 0.0002 26.1 2.9 20 326-346 22-41 (51)
60 KOG0812 SNARE protein SED5/Syn 62.8 1.4E+02 0.0029 28.1 11.9 49 264-312 234-282 (311)
61 PF04906 Tweety: Tweety; Inte 62.3 22 0.00048 35.2 6.6 29 317-345 176-204 (406)
62 KOG3065 SNAP-25 (synaptosome-a 61.4 37 0.00079 31.7 7.4 46 274-319 89-134 (273)
63 PF03904 DUF334: Domain of unk 61.1 97 0.0021 28.0 9.7 8 264-271 104-111 (230)
64 PHA02414 hypothetical protein 60.8 77 0.0017 24.6 7.7 45 265-309 30-74 (111)
65 PHA02692 hypothetical protein; 60.3 15 0.00032 26.7 3.6 10 323-332 41-50 (70)
66 COG1459 PulF Type II secretory 59.9 27 0.00059 34.5 6.7 76 269-345 110-185 (397)
67 KOG0862 Synaptobrevin/VAMP-lik 58.9 84 0.0018 28.2 8.9 38 266-303 136-173 (216)
68 PF05957 DUF883: Bacterial pro 58.6 80 0.0017 24.1 11.2 16 317-332 64-79 (94)
69 PF07889 DUF1664: Protein of u 58.5 1E+02 0.0022 25.3 10.0 83 61-157 39-122 (126)
70 PHA03240 envelope glycoprotein 58.2 9.2 0.0002 34.1 2.7 17 328-344 215-231 (258)
71 PHA02675 ORF104 fusion protein 58.1 79 0.0017 23.8 7.6 53 268-324 34-86 (90)
72 PF01519 DUF16: Protein of unk 57.3 93 0.002 24.4 8.0 45 264-308 53-97 (102)
73 PRK04325 hypothetical protein; 56.8 77 0.0017 23.3 8.3 47 265-311 10-56 (74)
74 cd00193 t_SNARE Soluble NSF (N 54.1 64 0.0014 21.6 8.2 54 269-322 4-57 (60)
75 PF14992 TMCO5: TMCO5 family 53.5 2E+02 0.0042 27.0 18.4 28 60-87 20-47 (280)
76 PRK02119 hypothetical protein; 53.4 88 0.0019 23.0 8.2 47 264-310 9-55 (73)
77 PF07127 Nodulin_late: Late no 53.2 12 0.00026 25.7 2.2 18 329-346 4-21 (54)
78 PF10717 ODV-E18: Occlusion-de 52.4 18 0.00038 27.3 3.0 15 332-346 30-44 (85)
79 PRK14762 membrane protein; Pro 52.1 21 0.00046 20.4 2.6 9 327-335 6-14 (27)
80 COG4942 Membrane-bound metallo 51.2 1.5E+02 0.0033 29.4 10.2 61 259-319 40-100 (420)
81 PF10267 Tmemb_cc2: Predicted 51.0 2.6E+02 0.0056 27.7 17.2 32 289-320 295-327 (395)
82 PF06072 Herpes_US9: Alphaherp 50.8 23 0.0005 24.9 3.2 13 335-347 44-56 (60)
83 PRK00295 hypothetical protein; 50.8 93 0.002 22.5 8.1 47 265-311 6-52 (68)
84 PRK00736 hypothetical protein; 50.5 93 0.002 22.4 7.9 46 265-310 6-51 (68)
85 PF06143 Baculo_11_kDa: Baculo 49.8 20 0.00044 27.1 3.0 8 332-339 45-52 (84)
86 PF00523 Fusion_gly: Fusion gl 49.6 26 0.00056 35.5 4.8 18 146-163 179-196 (490)
87 PF11166 DUF2951: Protein of u 49.1 1.2E+02 0.0027 23.4 11.3 40 266-305 13-52 (98)
88 KOG2678 Predicted membrane pro 49.0 2.1E+02 0.0044 25.9 10.4 65 268-335 155-223 (244)
89 PF06422 PDR_CDR: CDR ABC tran 47.8 22 0.00048 27.9 3.2 20 310-329 32-51 (103)
90 smart00503 SynN Syntaxin N-ter 47.5 1.3E+02 0.0029 23.3 11.4 34 145-178 82-115 (117)
91 PRK02793 phi X174 lysis protei 47.4 1.1E+02 0.0024 22.3 7.9 47 264-310 8-54 (72)
92 PF12911 OppC_N: N-terminal TM 46.3 37 0.00079 23.0 3.8 16 315-330 5-20 (56)
93 COG1256 FlgK Flagellar hook-as 44.8 3.8E+02 0.0082 27.8 12.4 56 8-89 107-162 (552)
94 PF04272 Phospholamban: Phosph 44.3 36 0.00079 22.4 3.2 19 328-346 31-49 (52)
95 PRK10573 type IV pilin biogene 43.7 64 0.0014 31.6 6.5 72 269-344 111-185 (399)
96 PF01102 Glycophorin_A: Glycop 42.4 29 0.00063 28.3 3.2 9 328-336 66-74 (122)
97 PRK04406 hypothetical protein; 42.1 1.4E+02 0.003 22.0 8.6 47 264-310 11-57 (75)
98 PF00804 Syntaxin: Syntaxin; 42.0 1.5E+02 0.0032 22.2 9.4 53 98-158 51-103 (103)
99 PF13314 DUF4083: Domain of un 41.5 37 0.00081 23.7 3.1 15 332-346 12-26 (58)
100 PF12325 TMF_TATA_bd: TATA ele 41.0 1.6E+02 0.0034 23.9 7.2 29 93-121 90-118 (120)
101 COG5346 Predicted membrane pro 40.1 1.3E+02 0.0028 24.5 6.3 10 329-338 93-102 (136)
102 PF12575 DUF3753: Protein of u 40.0 23 0.0005 25.9 2.0 23 324-346 42-64 (72)
103 PF01601 Corona_S2: Coronaviru 39.1 14 0.00031 37.9 1.1 60 60-125 254-320 (610)
104 PF04210 MtrG: Tetrahydrometha 38.5 1.5E+02 0.0034 21.5 7.1 18 300-317 20-37 (70)
105 PF11932 DUF3450: Protein of u 38.4 3E+02 0.0066 25.0 9.7 109 59-173 43-163 (251)
106 PF06024 DUF912: Nucleopolyhed 37.5 26 0.00056 27.5 2.1 8 337-344 73-80 (101)
107 PF15290 Syntaphilin: Golgi-lo 37.4 2.5E+02 0.0054 26.3 8.6 46 58-110 54-100 (305)
108 TIGR01732 tiny_TM_bacill conse 37.1 38 0.00081 19.6 2.1 7 338-344 14-20 (26)
109 PRK10884 SH3 domain-containing 36.3 3.1E+02 0.0068 24.4 11.8 36 281-316 121-156 (206)
110 COG3630 OadG Na+-transporting 36.3 38 0.00082 25.6 2.7 19 329-347 12-30 (84)
111 PF01540 Lipoprotein_7: Adhesi 35.5 3.6E+02 0.0078 25.1 9.3 52 60-118 216-267 (353)
112 PF09680 Tiny_TM_bacill: Prote 34.6 36 0.00079 19.3 1.8 9 337-345 11-19 (24)
113 PF09278 MerR-DNA-bind: MerR, 34.4 1.6E+02 0.0034 20.4 7.0 55 62-126 5-59 (65)
114 KOG1693 emp24/gp25L/p24 family 34.1 1.8E+02 0.0039 25.8 6.9 19 260-278 127-145 (209)
115 PF15102 TMEM154: TMEM154 prot 33.9 20 0.00044 30.0 1.0 21 327-347 58-78 (146)
116 KOG0994 Extracellular matrix g 33.9 5.4E+02 0.012 29.3 11.6 102 65-170 1654-1756(1758)
117 PF15106 TMEM156: TMEM156 prot 33.5 37 0.00081 30.2 2.6 17 327-345 178-194 (226)
118 TIGR01294 P_lamban phospholamb 33.4 65 0.0014 21.2 3.1 14 332-345 35-48 (52)
119 KOG1666 V-SNARE [Intracellular 32.5 1E+02 0.0022 27.6 5.2 32 98-129 31-62 (220)
120 PF09577 Spore_YpjB: Sporulati 32.4 1.5E+02 0.0033 27.0 6.5 18 327-344 200-217 (232)
121 TIGR02120 GspF general secreti 32.0 1.4E+02 0.003 29.2 6.7 39 272-310 116-154 (399)
122 TIGR01195 oadG_fam sodium pump 31.6 48 0.001 24.9 2.7 14 332-345 12-25 (82)
123 PHA02844 putative transmembran 31.6 59 0.0013 23.9 2.9 14 327-340 45-58 (75)
124 PRK14710 hypothetical protein; 31.1 58 0.0013 23.7 2.8 18 327-344 10-27 (86)
125 KOG4433 Tweety transmembrane/c 31.0 3.4E+02 0.0073 27.5 8.9 16 322-337 205-220 (526)
126 PHA02690 hypothetical protein; 30.7 2.3E+02 0.005 21.2 7.3 15 332-346 46-60 (90)
127 COG4068 Uncharacterized protei 30.6 93 0.002 21.9 3.6 21 315-338 33-53 (64)
128 PRK00846 hypothetical protein; 30.6 2.3E+02 0.005 21.1 8.4 49 264-312 13-61 (77)
129 PRK15041 methyl-accepting chem 30.3 4.8E+02 0.01 26.7 10.7 53 257-309 433-485 (554)
130 PF15168 TRIQK: Triple QxxK/R 30.3 2.3E+02 0.005 21.0 6.2 21 327-347 53-73 (79)
131 PRK09793 methyl-accepting prot 30.2 5.1E+02 0.011 26.3 10.8 53 258-310 430-482 (533)
132 PF01519 DUF16: Protein of unk 30.0 2.8E+02 0.006 21.9 8.5 48 261-308 34-83 (102)
133 KOG3894 SNARE protein Syntaxin 29.5 4.6E+02 0.0099 25.0 9.2 62 275-340 246-311 (316)
134 PF06024 DUF912: Nucleopolyhed 29.3 47 0.001 26.0 2.4 12 336-347 68-79 (101)
135 PHA02819 hypothetical protein; 29.3 1E+02 0.0022 22.5 3.7 20 322-341 37-57 (71)
136 KOG0568 Molecular chaperone (D 29.3 2.3E+02 0.0049 25.8 6.8 66 58-123 253-319 (342)
137 smart00502 BBC B-Box C-termina 29.0 2.7E+02 0.0059 21.5 8.4 56 269-324 37-93 (127)
138 PF00015 MCPsignal: Methyl-acc 28.9 3.7E+02 0.008 23.0 11.1 56 257-312 128-183 (213)
139 PF07083 DUF1351: Protein of u 28.9 3.7E+02 0.008 24.0 8.4 65 64-128 41-107 (215)
140 PHA01815 hypothetical protein 28.9 80 0.0017 20.9 2.9 14 333-346 35-48 (55)
141 PF14523 Syntaxin_2: Syntaxin- 28.7 2.6E+02 0.0057 21.2 10.2 85 86-179 14-98 (102)
142 PF13677 MotB_plug: Membrane M 28.6 78 0.0017 22.0 3.2 21 325-345 15-38 (58)
143 PF08135 EPV_E5: Major transfo 28.3 95 0.002 20.1 3.1 10 336-345 20-29 (44)
144 PF07851 TMPIT: TMPIT-like pro 28.1 5.4E+02 0.012 24.8 9.6 28 99-126 28-55 (330)
145 PF04505 Dispanin: Interferon- 27.7 43 0.00094 25.1 1.8 19 312-330 50-68 (82)
146 PRK15048 methyl-accepting chem 27.6 6.5E+02 0.014 25.6 11.1 52 258-309 432-483 (553)
147 PRK11466 hybrid sensory histid 26.9 6.8E+02 0.015 27.1 11.7 36 297-332 304-339 (914)
148 TIGR02956 TMAO_torS TMAO reduc 26.9 6.1E+02 0.013 27.6 11.3 23 100-122 74-96 (968)
149 PRK11875 psbT photosystem II r 26.6 1E+02 0.0022 18.7 2.8 10 337-346 13-22 (31)
150 PHA02955 hypothetical protein; 26.2 68 0.0015 28.7 3.0 20 324-343 178-197 (213)
151 PF06738 DUF1212: Protein of u 26.1 1.3E+02 0.0028 26.0 4.9 30 301-330 77-107 (193)
152 COG4537 ComGC Competence prote 25.9 61 0.0013 25.4 2.3 30 315-344 4-34 (107)
153 COG2966 Uncharacterized conser 25.9 1.1E+02 0.0024 28.1 4.5 43 296-338 94-137 (250)
154 PF05377 FlaC_arch: Flagella a 25.8 2.3E+02 0.005 19.6 6.5 24 259-282 23-46 (55)
155 KOG1326 Membrane-associated pr 25.7 59 0.0013 35.5 3.0 26 60-85 644-669 (1105)
156 PF10960 DUF2762: Protein of u 25.7 57 0.0012 23.9 2.1 14 332-345 14-27 (71)
157 COG3736 VirB8 Type IV secretor 25.1 1.4E+02 0.0031 27.3 4.9 35 308-342 23-59 (239)
158 KOG4559 Uncharacterized conser 25.1 1.7E+02 0.0037 22.9 4.6 49 260-316 64-116 (120)
159 PF02532 PsbI: Photosystem II 24.7 1.3E+02 0.0028 18.8 3.2 12 334-345 10-21 (36)
160 PF00429 TLV_coat: ENV polypro 24.6 3.3E+02 0.0072 28.2 8.2 26 264-289 435-460 (561)
161 PF11119 DUF2633: Protein of u 24.6 91 0.002 21.9 2.8 8 337-344 16-23 (59)
162 PHA02689 ORF051 putative membr 24.3 93 0.002 25.3 3.2 22 325-346 28-49 (128)
163 PF08113 CoxIIa: Cytochrome c 24.1 1.2E+02 0.0026 18.7 2.9 9 333-341 12-20 (34)
164 PRK07739 flgK flagellar hook-a 23.8 7.8E+02 0.017 25.0 12.1 58 6-89 113-170 (507)
165 PRK03814 oxaloacetate decarbox 23.6 82 0.0018 23.9 2.7 8 333-340 17-24 (85)
166 smart00397 t_SNARE Helical reg 23.4 2.4E+02 0.0052 19.0 9.5 54 256-309 11-64 (66)
167 PRK14750 kdpF potassium-transp 23.3 95 0.0021 18.4 2.2 8 333-340 7-14 (29)
168 PRK04406 hypothetical protein; 23.2 3.1E+02 0.0067 20.2 8.0 50 270-319 3-52 (75)
169 PF13253 DUF4044: Protein of u 23.1 76 0.0016 19.9 2.0 17 330-346 13-29 (35)
170 PF03915 AIP3: Actin interacti 23.0 7.7E+02 0.017 24.6 13.7 34 264-297 299-332 (424)
171 PF05739 SNARE: SNARE domain; 22.9 2.6E+02 0.0055 19.1 10.1 55 259-313 6-60 (63)
172 PF11945 WASH_WAHD: WAHD domai 22.9 4.1E+02 0.009 25.1 7.8 56 264-323 25-80 (297)
173 PF10498 IFT57: Intra-flagella 22.8 7.1E+02 0.015 24.2 12.4 21 54-74 187-207 (359)
174 CHL00031 psbT photosystem II p 22.7 1.1E+02 0.0023 18.9 2.5 13 334-346 10-22 (33)
175 TIGR02120 GspF general secreti 22.5 4.2E+02 0.0092 25.7 8.3 32 279-310 325-356 (399)
176 PF14812 PBP1_TM: Transmembran 22.3 5.1 0.00011 30.1 -4.0 7 324-330 64-70 (81)
177 PF05399 EVI2A: Ectropic viral 22.0 81 0.0018 28.2 2.7 7 329-335 133-139 (227)
178 PLN03230 acetyl-coenzyme A car 22.0 2.8E+02 0.0061 27.6 6.7 57 70-128 78-134 (431)
179 PHA03332 membrane glycoprotein 21.9 1.2E+03 0.025 26.4 11.5 32 256-287 1200-1231(1328)
180 PHA02967 hypothetical protein; 21.7 1.1E+02 0.0024 25.0 3.1 22 325-346 25-46 (128)
181 TIGR03090 SASP_tlp small, acid 21.6 1.9E+02 0.0041 21.1 4.0 26 293-318 9-34 (70)
182 PF00895 ATP-synt_8: ATP synth 21.5 1.2E+02 0.0027 20.0 3.1 6 327-332 9-14 (54)
183 PHA02650 hypothetical protein; 21.5 1.2E+02 0.0027 22.5 3.1 15 326-340 45-59 (81)
184 PF06015 Chordopox_A30L: Chord 21.5 2.2E+02 0.0048 20.7 4.3 33 60-92 22-54 (71)
185 TIGR03715 KxYKxGKxW KxYKxGKxW 21.4 79 0.0017 18.6 1.8 13 321-333 7-19 (29)
186 TIGR01149 mtrG N5-methyltetrah 21.4 3.3E+02 0.0072 19.8 7.3 15 303-317 23-37 (70)
187 PF07798 DUF1640: Protein of u 21.3 5.3E+02 0.011 22.1 12.6 11 326-336 156-166 (177)
188 CHL00198 accA acetyl-CoA carbo 21.3 3.9E+02 0.0085 25.6 7.3 54 70-125 11-64 (322)
189 PHA03046 Hypothetical protein; 21.1 4.8E+02 0.01 21.5 7.3 53 256-308 76-128 (142)
190 PF04912 Dynamitin: Dynamitin 21.1 4.9E+02 0.011 25.4 8.3 86 62-157 302-387 (388)
191 PRK10381 LPS O-antigen length 20.7 1E+02 0.0022 30.2 3.4 24 322-345 36-59 (377)
192 PF10661 EssA: WXG100 protein 20.5 1.1E+02 0.0024 25.7 3.1 10 336-345 130-139 (145)
193 cd07912 Tweety_N N-terminal do 20.5 8.6E+02 0.019 24.2 12.1 10 324-333 206-215 (418)
194 PF04799 Fzo_mitofusin: fzo-li 20.4 5.7E+02 0.012 22.1 7.5 29 99-127 116-144 (171)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-61 Score=430.12 Aligned_cols=307 Identities=45% Similarity=0.663 Sum_probs=248.0
Q ss_pred CCcCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 8 SSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKL 87 (348)
Q Consensus 8 ~~~~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L 87 (348)
|++||||.||++||+++++|+...+... ..| . ......+.+||.+.|+.|+++|+.+.+||++|+.|
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~--~~p--------~---~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~l 67 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGVNQ--ADP--------G---ADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQL 67 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhcccccc--CCC--------c---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999875432221 111 1 12345567799999999999999999999999999
Q ss_pred HhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 88 AKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTM 167 (348)
Q Consensus 88 ~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~ 167 (348)
+|++++|+|++.||++||+.||+++..++..|.+|+...+..+. ..+.+...|.+|||..|+++|++++++|+++++.
T Consensus 68 AKrks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn--~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~ 145 (311)
T KOG0812|consen 68 AKRKSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGN--LSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEI 145 (311)
T ss_pred HhhcccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhcc--ccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999998854431 1235668999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCC---CCCC-CCCCCCCCccCCCCCchhhhhh
Q 018979 168 RTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWA---NGSA-SSSRLFPSKQADGESLPLLQQQ 243 (348)
Q Consensus 168 r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~p~~~~~ 243 (348)
|++++|+.+.|+++|+...+.....|. +. .++.+.|+. ...+ .+..+...+.++.+ .|
T Consensus 146 Rtenmka~k~R~dkfs~~~a~~~a~p~-~n-----------~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~-~~----- 207 (311)
T KOG0812|consen 146 RTENMKAVKNRRDKFSASYASLNANPV-SN-----------SAARLHPLKLLVDPKDEASQDVESLNMGDSS-NP----- 207 (311)
T ss_pred HHHHHHHHhhHHHHhccccCCCCCccc-Cc-----------ccccCCchhhhcCchhhcccccccccccCCC-CC-----
Confidence 999999999999999877543221221 10 011111110 0000 11111111112211 11
Q ss_pred hHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 018979 244 QGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSIS 323 (348)
Q Consensus 244 ~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~ 323 (348)
.++|++++++.++|+++|..++++||++|.|||+||++||+||.+|||++.|||+||+++..||++|+.+|.||+++.+
T Consensus 208 -qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 208 -QQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS 286 (311)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence 1567777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhC
Q 018979 324 SNRWLMLKIFFVLVVFLMIFLFFVA 348 (348)
Q Consensus 324 ~~r~~~~~if~vl~~f~l~f~~~~~ 348 (348)
+|||+|++||+|+|||||+|+||.|
T Consensus 287 SNRwLmvkiF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 287 SNRWLMVKIFGILIVFFLVFVLFLA 311 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-37 Score=274.86 Aligned_cols=289 Identities=20% Similarity=0.274 Sum_probs=216.6
Q ss_pred cCCChHHHHHHHHHHHhhhhcCCCCCCCCCCC--CCcccCCCCc---cchhhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 10 YRDRTQEFLSVVERLKKSVASANNAPSSSGSS--NSSRAVTKPE---DRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKL 84 (348)
Q Consensus 10 ~~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L 84 (348)
.||||..|.....++.......+. .+...+. ..-..++... +.......+|.|...+++|...+..++.++.+|
T Consensus 2 tRnrT~lF~~~Rn~~~~~r~~~~~-~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eL 80 (305)
T KOG0809|consen 2 TRNRTELFLLYRNNASHNRQPLGD-RSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDEL 80 (305)
T ss_pred cchHHHHHHHHHhhhhhhcccccc-ccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 689999999999888654322111 0000000 0000011100 011122348899999999999999999999999
Q ss_pred HHHHhhccC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhH
Q 018979 85 AKLAKRTSV--FDDPT---FEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTK 159 (348)
Q Consensus 85 ~~L~k~~~l--f~d~~---~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~ 159 (348)
.++|.|+.+ |+|.. .+|+.||..|++.+..|++.|+.+....+ ..++.....+.|++..+..+|+.++.
T Consensus 81 gk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n------~~~~~e~~~~~n~~~~la~~LQ~~s~ 154 (305)
T KOG0809|consen 81 GKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN------QLSPSERLLRKNAQGYLALQLQTLSR 154 (305)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999744 99886 58999999999999999999998875321 12456677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCchh
Q 018979 160 EFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPL 239 (348)
Q Consensus 160 ~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 239 (348)
.|+..|..|.++++.+.++...+-... .| .... ++.+ .
T Consensus 155 ~fR~~Qs~YLK~l~~~ee~~~~~e~~~-----~~--------------------~~~~--------------~dd~---d 192 (305)
T KOG0809|consen 155 EFRGLQSKYLKRLRNREENSQEYEDSL-----DN--------------------TVDL--------------PDDE---D 192 (305)
T ss_pred HHHHHHHHHHHHhhchhhcccchhhhc-----cc--------------------cccC--------------cchh---h
Confidence 999999999988887666553332110 00 0000 0001 1
Q ss_pred hhhhhH-HHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 240 LQQQQG-QQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 240 ~~~~~~-q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
++.... ++|+++++.++.++.+|.+||.+|..+|.||++||+||+.||.+||.+|||||||++.+..+|+.|.+||.||
T Consensus 193 ~~~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 193 FSDRTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred hhhhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 222222 4555666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCchhHHHHHHHHHHHHHHHHHHh
Q 018979 319 LNSISSNRWLMLKIFFVLVVFLMIFLFFV 347 (348)
Q Consensus 319 ~~~~~~~r~~~~~if~vl~~f~l~f~~~~ 347 (348)
..|++++++++|+.++++++|++|+++++
T Consensus 273 e~yQk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 273 ERYQKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred HHHHhcCCceEehHHHHHHHHHHHHHHHh
Confidence 99999999887777888777777777654
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=234.87 Aligned_cols=251 Identities=19% Similarity=0.294 Sum_probs=186.3
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018979 57 VAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFD---DP--TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNE 131 (348)
Q Consensus 57 ~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~---d~--~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~ 131 (348)
+...++|+..+++|..+|..+...+.+|.++|.+. +.+ +. ..+++.+...|+..-+.++..|+.+.........
T Consensus 32 ~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~-l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~ 110 (297)
T KOG0810|consen 32 DSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS-LHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADET 110 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36689999999999999999999999999999543 322 22 2678889999999999999999888876554332
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCC
Q 018979 132 SGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTA 211 (348)
Q Consensus 132 ~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 211 (348)
. +.......++.+....+..+|.+++..|+.++..|.++.|.+..|+.....+..... . .
T Consensus 111 ~-~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~d-e------~------------ 170 (297)
T KOG0810|consen 111 Q-NRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTD-E------E------------ 170 (297)
T ss_pred c-CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCCh-H------H------------
Confidence 1 134555677888888999999999999999999999999999988866654421100 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 212 SPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQG 291 (348)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qg 291 (348)
...+.+.|+ +. .+.+...+. -+......+++++||++|.+||++|.||++||.+|++||..||
T Consensus 171 ie~~ie~g~---~~-------------~f~~~~i~~-~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~Qg 233 (297)
T KOG0810|consen 171 IEEMIESGG---SE-------------VFTQKAIQD-RGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQG 233 (297)
T ss_pred HHHHHHCCC---hH-------------HHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111110 00 112111110 0012234678999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHH
Q 018979 292 EIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLF 345 (348)
Q Consensus 292 e~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~~ 345 (348)
||||+||.||..|.+||+.|..++++|.+|++++|+|.|+++++++++++++++
T Consensus 234 Emvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 234 EMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVV 287 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhh
Confidence 999999999999999999999999999999999885544444444444444443
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.9e-21 Score=176.12 Aligned_cols=225 Identities=20% Similarity=0.238 Sum_probs=139.6
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 018979 58 AIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTF---EIQELTAVIKQDITALNSAVVDLQLLCNSQNESGN 134 (348)
Q Consensus 58 ~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~---eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~ 134 (348)
..+..|...+.+|...|..+......|.+.+...+.+.|.+. .++.....+.+.++.+...|+.+.....
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~------- 86 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL------- 86 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 456789999999999999999999999998888777777763 3444444455555555555555543321
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCC
Q 018979 135 ISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPP 214 (348)
Q Consensus 135 ~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 214 (348)
..... .++..+..+..+|..++..|....++.-++.. ....+..+.. ....+. .++
T Consensus 87 --~~~~~-------~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~--------s~~~~~-----~~~ 142 (269)
T KOG0811|consen 87 --ESDLR-------QLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQN--------SQQLDE-----ESP 142 (269)
T ss_pred --hhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cccccccccc--------chhhhh-----hhh
Confidence 12223 44555555555555555555443332222221 0000000000 000000 000
Q ss_pred CCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHHHHhch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 215 PWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVP---LQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQG 291 (348)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~---~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qg 291 (348)
.... .... + ...+...+.|.+.-+ .+...+++|.++|++||..|.||++||++|+.||++||
T Consensus 143 ~~~~-----~~~~-----~-----~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG 207 (269)
T KOG0811|consen 143 RVDE-----LSNN-----G-----SQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQG 207 (269)
T ss_pred hhhh-----hhcc-----c-----hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 0000 0 001111122222222 24567999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchh
Q 018979 292 EIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWL 328 (348)
Q Consensus 292 e~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~ 328 (348)
++||.||+||+.|..||+.|+.+|.||.+|++++|.|
T Consensus 208 ~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~ 244 (269)
T KOG0811|consen 208 ELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK 244 (269)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999987633
No 5
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.90 E-value=1.2e-21 Score=170.41 Aligned_cols=238 Identities=15% Similarity=0.271 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 018979 61 SEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTT 140 (348)
Q Consensus 61 ~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~ 140 (348)
-.|......|.++++.+...+.++..+|+.... +. -+++...++..+.....+-..|+...+....+.....-..
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~--Ev---~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl 95 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLT--EV---FEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHL 95 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccch
Confidence 357779999999999999999999999997532 11 1122233333333333333333332221100000001111
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCCC
Q 018979 141 SHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGS 220 (348)
Q Consensus 141 ~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (348)
..++......+.+|.++...|+.+...|.+..+.+..|+..+..|.+++. ++. .
T Consensus 96 ~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEd--------eve------------~------ 149 (280)
T COG5074 96 ANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATED--------EVE------------A------ 149 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchH--------HHH------------H------
Confidence 22355666788999999999999999999999988888777665554321 000 0
Q ss_pred CCCCCCCCCccCCCCCchhhhhhhHHHHHHhc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 221 ASSSRLFPSKQADGESLPLLQQQQGQQQQQMV-------PLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEI 293 (348)
Q Consensus 221 ~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~-------~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~ 293 (348)
... |...+..++ |..+- .....+++.||.+|.+||++|.||.+||++|++||.+|.++
T Consensus 150 -----aIn----d~nG~qvfs------qalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~ 214 (280)
T COG5074 150 -----AIN----DVNGQQVFS------QALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQEN 214 (280)
T ss_pred -----Hhc----ccchHHHHH------HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 000 000000111 11110 12357899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcc---cCchhHHHHHHHHHHHHHHHH
Q 018979 294 AIRIDENMDDTLANVEGAQSQLVRYLNSIS---SNRWLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 294 id~Id~nv~~~~~~v~~g~~~L~ka~~~~~---~~r~~~~~if~vl~~f~l~f~ 344 (348)
+|.|+.|++++..||+.|+..+.+|.++.+ ++||.|+.|++|+|+|++.||
T Consensus 215 Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 215 VDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999865 466877777777777766665
No 6
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.90 E-value=1.4e-21 Score=174.88 Aligned_cols=240 Identities=21% Similarity=0.284 Sum_probs=155.3
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 54 KFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTS--VFDDPT---FEIQELTAVIKQDITALNSAVVDLQLLCNS 128 (348)
Q Consensus 54 ~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~--lf~d~~---~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~ 128 (348)
.+.....|-|...+..|...+..++.....|..-.++.+ .|.|.. ++|++|+..|.+++.+|.+-++..-.....
T Consensus 27 ~e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s 106 (283)
T COG5325 27 KEDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQS 106 (283)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999999998888864 487765 689999999999999999887654432211
Q ss_pred cCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCC
Q 018979 129 QNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGA 208 (348)
Q Consensus 129 ~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 208 (348)
.. .....-.-.|-.-..-.+.+.-+..|++-+..|.+.+. ....+ ..|. .. +.
T Consensus 107 ~~-----~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~-----------~~~~~-~~~l------~e----ee 159 (283)
T COG5325 107 SF-----LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLR-----------NKNND-QHPL------EE----EE 159 (283)
T ss_pred HH-----HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHH-----------hcccc-cCch------hh----hh
Confidence 10 00000011122223344555555566655555543330 00000 0111 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHHHHhchh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 209 STASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPL----QDSYMHSRAEALHNVESTIHELGNIFTQLA 284 (348)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~~----~~~~l~~R~~~i~~ie~~i~el~~lf~~l~ 284 (348)
+ ....+ .. .+++..+ |..+..+ +...+++|.++|.+|++.|.||++||.||+
T Consensus 160 ----------~----e~~~~---~~------~sq~~lq-q~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~ 215 (283)
T COG5325 160 ----------D----EESLS---SL------GSQQTLQ-QQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLG 215 (283)
T ss_pred ----------h----hhhhh---cc------chhhHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00 1122222 2223332 233489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHH
Q 018979 285 TMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 285 ~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~ 344 (348)
.+|.+||+.|||||+|++.+.+|.+.|++||.||-.|+++.++|-.+++++|+||.+|+.
T Consensus 216 ~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~ 275 (283)
T COG5325 216 SLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVS 275 (283)
T ss_pred HHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988755443334444444444443
No 7
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.3e-17 Score=152.29 Aligned_cols=304 Identities=14% Similarity=0.113 Sum_probs=194.1
Q ss_pred CCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 11 RDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKR 90 (348)
Q Consensus 11 ~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~ 90 (348)
+|+|..|+..|+.++..+++...+. ..+ .++ ....+.+...|...|.++-..|..+..+|-+.++-...
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~~--~~~--------~~~-~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d 69 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGGD--AHV--------ERK-QEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKD 69 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccCC--CCc--------chh-hcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5999999999999998887641111 011 122 23456678889999999999999999999886554441
Q ss_pred ccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018979 91 TSVFDDP-TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRT 169 (348)
Q Consensus 91 ~~lf~d~-~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~ 169 (348)
. -.+|- .++|+ .+.-.-+..|...|..|....... .+.+...|.+.|...+...+++..+.+...-..+.
T Consensus 70 ~-~mtd~ekd~id---~e~~~fi~~~t~~~~~l~~~~~~~-----h~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV 140 (316)
T KOG3894|consen 70 F-RMTDAEKDEID---QECRLFIQQYTEKIEQLINYEMEE-----HSLQLERFQDAVLRWLGILLKRNENTYSVQHKQRV 140 (316)
T ss_pred H-hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 1 12221 14444 444444888999999888766543 35788999999999999999988888776655554
Q ss_pred HHHHHHHhhh--hhhc-cCCCcCCCCcccccCCcccccCCC-CCCCCCCCCCCCCCCCCCCCCCccCCCCCchhhhhhhH
Q 018979 170 ENLKVHENRR--QLFS-SNASKESTNPFVRQRPLATRLDGG-ASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQG 245 (348)
Q Consensus 170 ~~~k~~~~R~--~~~~-~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 245 (348)
++.-....-. ..+- ....+....+.. ..++... ... .....|.... . .++.+.+.. +.+..+.. .
T Consensus 141 ~~~l~~~rl~vl~~~~~~~~~s~~~~~~~-~~~~~~~-~en~~~~~~~~~~s-~--~~~e~~~~~--~~~~e~~~----s 209 (316)
T KOG3894|consen 141 ENELSEKRLSVLACLDIKYVESKFQTIQN-ERLSKDN-KENTLSERADDNRS-L--ADSELGQDE--EKHYEDPL----S 209 (316)
T ss_pred HHHHHHHHHhhHhhcchhhccCchhhhhh-hcchhhh-HHHHHhhcchhhhc-c--cchhhcCcc--cccCCccc----c
Confidence 4332211100 0000 000000000000 0000000 000 0000000000 0 111122211 11111112 2
Q ss_pred HHHHHhchhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018979 246 QQQQQMVPLQ----DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNS 321 (348)
Q Consensus 246 q~Q~ql~~~~----~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~ 321 (348)
.+|+|+++.. .+.+++-.+++++|++.|+||+.|...|+++|.+|..-||.|.+++..+..||++||++|.||.++
T Consensus 210 ~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~ 289 (316)
T KOG3894|consen 210 KEQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRN 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHh
Confidence 2455666532 345777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHH
Q 018979 322 ISSNRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 322 ~~~~r~~~~~if~vl~~f~l~f~~~ 346 (348)
..+.|.|++ +|++++.|+|+|+..
T Consensus 290 ~~~~r~~~l-f~llvlsf~lLFldw 313 (316)
T KOG3894|consen 290 NGGLRVFLL-FFLLVLSFSLLFLDW 313 (316)
T ss_pred cccchhHHH-HHHHHHHHHHHHHhh
Confidence 999996655 788889999999874
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.44 E-value=1.2e-12 Score=94.64 Aligned_cols=63 Identities=29% Similarity=0.467 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 018979 261 SRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSIS 323 (348)
Q Consensus 261 ~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~ 323 (348)
+|+++|..|+++|.+|++||.+|+.+|.+|+++||+|++||+.|..+|..|+.+|.+|.++++
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999999999999864
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.29 E-value=1.8e-11 Score=87.17 Aligned_cols=59 Identities=39% Similarity=0.576 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 260 HSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 260 ~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
++|++++..|+.+|.+|++||.+|+.+|.+|+++||+|++|++.+..+++.|+.+|.||
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999999999999999999999999999875
No 10
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9.7e-09 Score=92.38 Aligned_cols=217 Identities=18% Similarity=0.197 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDT 139 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~ 139 (348)
.++|+..-.++.+..+.+...+.+...+.+. -..+++++|..|++.+...-..|+.+.....+..+......-+
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~------~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~E 78 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD------TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFE 78 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHH
Confidence 4568888888888888888888777766654 2356777888888777777777777766655543322234455
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCC
Q 018979 140 TSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANG 219 (348)
Q Consensus 140 ~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (348)
..-|..-+..+..++..+-..|.. ...... ..|... . .| +.+ |....
T Consensus 79 l~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~~l-~--------~~-----------~~~-----~~~~~-- 125 (235)
T KOG3202|consen 79 LSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRDIL-L--------GP-----------EKS-----PNLDE-- 125 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchhhh-c--------CC-----------CCC-----Cchhh--
Confidence 666777777787777777666655 000000 001100 0 00 000 00000
Q ss_pred CCCCCCCCCCccCC-CCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 220 SASSSRLFPSKQAD-GESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRID 298 (348)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id 298 (348)
....... .| + +...+.|.|+ +++-.+.+..|+.+|.-+.++-..|+..+.+|+.+||..+
T Consensus 126 --~~~~~~~---~D~v-------~~~~~~qqqm-------~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~ 186 (235)
T KOG3202|consen 126 --AMSRASG---LDNV-------QEIVQLQQQM-------LQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLD 186 (235)
T ss_pred --hHHHhhc---cCcH-------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0000000 01 1 0111223333 4444578999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHH
Q 018979 299 ENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFF 334 (348)
Q Consensus 299 ~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~ 334 (348)
+.++.+...+..+.+.|.+..+..+++++||+++.+
T Consensus 187 ~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l 222 (235)
T KOG3202|consen 187 NEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLL 222 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 999999999999999999999977777755443333
No 11
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.20 E-value=1.3e-10 Score=84.29 Aligned_cols=63 Identities=35% Similarity=0.509 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
..++++|++++..|+.+|.++++||.+|+.+|.+|+++||+|+++++.+..+++.|..+|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999999999999999999999874
No 12
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.95 E-value=1.1e-08 Score=80.78 Aligned_cols=98 Identities=28% Similarity=0.308 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDD----PTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNI 135 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d----~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~ 135 (348)
+++|+..+.+|...|..+...+.+|..||++.....+ ...+|+.|+..|++.+..|+..|+.|+......
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~------ 75 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS------ 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Confidence 6899999999999999999999999999999755333 237899999999999999999999999874311
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 018979 136 SSDTTSHSTTVVDNLKNRLMGTTKEFKEVL 165 (348)
Q Consensus 136 ~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~ 165 (348)
....+..+++...+.++..++..|++++
T Consensus 76 --~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 --EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp --HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1223455666777777777777777653
No 13
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=98.90 E-value=9.8e-08 Score=80.96 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDD-P---TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNI 135 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d-~---~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~ 135 (348)
+++|+..+..|..+|..+...+..|..+|+....-.| . ...++.+...|+..++.++..|+.|.......... .
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~--~ 78 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEAL--N 78 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--C
Confidence 4689999999999999999999999999987543333 2 26789999999999999999999998765432211 1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 018979 136 SSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNAS 187 (348)
Q Consensus 136 ~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~ 187 (348)
+....+++.+.+..|..+|.++...|+.++..|.+.+|.+..|+..++.+.+
T Consensus 79 ~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~ 130 (151)
T cd00179 79 GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEA 130 (151)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4556788999999999999999999999999999999999999977765543
No 14
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=98.70 E-value=6.7e-07 Score=72.35 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDP----TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNI 135 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~----~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~ 135 (348)
+++|+..+++|..+|..++..+.+|..+|.....-.+. ...++.+...|....+.|+..|+.|......... .
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~---~ 79 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA---S 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc---c
Confidence 67899999999999999999999999999987443222 2578888999999999999999999876543221 1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018979 136 SSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENL 172 (348)
Q Consensus 136 ~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~ 172 (348)
++.....+.+++..|..+|+++...|+.++..|.+.+
T Consensus 80 ~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 80 GSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445678899999999999999999999999997654
No 15
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=9.5e-05 Score=58.50 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHH
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMI 342 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~ 342 (348)
.+.++.+...|.-|..+--++...|..|..+||.+|++.+.+.......-..++.-.++ ++.+-+|..++++++.|+++
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~fi~ 113 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAFFIL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Confidence 36788899999999999999999999999999999999999999999999999887777 33332333334444455555
Q ss_pred HH
Q 018979 343 FL 344 (348)
Q Consensus 343 f~ 344 (348)
|+
T Consensus 114 ~~ 115 (118)
T KOG3385|consen 114 WV 115 (118)
T ss_pred he
Confidence 44
No 16
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=97.59 E-value=0.00026 Score=54.37 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 11 RDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAK 86 (348)
Q Consensus 11 ~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~ 86 (348)
+|+|.+|++||+..+..++..+... . . ......+.....+|+++|.+|...|..+..+|.++..
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~~~---~--~-------~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~ 64 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGKAP---S--D-------SSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRK 64 (87)
T ss_pred CCccHHHHHHHHHHHhhcccccccc---c--c-------ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998765432100 0 0 0012345577899999999999999999999988654
No 17
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=97.52 E-value=3.7e-05 Score=45.39 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=17.3
Q ss_pred CCcCCChHHHHHHHHHHHhhhhc
Q 018979 8 SSYRDRTQEFLSVVERLKKSVAS 30 (348)
Q Consensus 8 ~~~~DRT~eF~~~v~~~~~~~~~ 30 (348)
++++|||.||+.||.++++++..
T Consensus 2 ~~IqdRT~EFqqcV~s~~k~nk~ 24 (29)
T PF11416_consen 2 TSIQDRTIEFQQCVSSYKKRNKK 24 (29)
T ss_dssp -HHHB-HHHHHHHHHHHHHH---
T ss_pred cchhHhhHHHHHHHHHHHHHHhh
Confidence 37899999999999999998864
No 18
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.036 Score=52.17 Aligned_cols=201 Identities=10% Similarity=0.154 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 95 DDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKV 174 (348)
Q Consensus 95 ~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~ 174 (348)
++..++|-..+..|+..+..+.+............ ..+.....+.+++-..|.....+--..+.+..+.|.+.++.
T Consensus 81 ~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~----~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~R 156 (297)
T KOG0810|consen 81 ESLVDEIRRRARKIKTKLKALEKENEADETQNRSS----AGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQR 156 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446788888999999999888887776543221 22344445555556677777777777777777777777765
Q ss_pred HHhhhhh----------hccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCchhhhhhh
Q 018979 175 HENRRQL----------FSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQ 244 (348)
Q Consensus 175 ~~~R~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 244 (348)
+-.-... +...+... .+. ..++.+. + .
T Consensus 157 ql~i~~~~~~~de~ie~~ie~g~~~-------------------------~f~------~~~i~~~-~-----------~ 193 (297)
T KOG0810|consen 157 QLFIVGGEETTDEEIEEMIESGGSE-------------------------VFT------QKAIQDR-G-----------Q 193 (297)
T ss_pred HHhhhCCCcCChHHHHHHHHCCChH-------------------------HHH------HHHHHHh-h-----------h
Confidence 5444322 11111100 000 0011100 0 0
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Q 018979 245 GQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISS 324 (348)
Q Consensus 245 ~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~ 324 (348)
..+-+..++.....+..-...|..|+.--.+++.|-..=+.||..=...+.+=.++|+.+.+++++| .+|.+..++
T Consensus 194 ~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kA----v~~qkkaRK 269 (297)
T KOG0810|consen 194 AKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKA----VKYQKKARK 269 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhh
Confidence 0111111224456788889999999999999999999999999999999999999999999999999 578888888
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 018979 325 NRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 325 ~r~~~~~if~vl~~f~l~f~~~ 346 (348)
+.|+||++++|+++++++++++
T Consensus 270 ~k~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 270 WKIIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred ceeeeehHHHHHHHHHhhhhcc
Confidence 8988888888888888887764
No 19
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.37 E-value=0.0062 Score=46.79 Aligned_cols=52 Identities=13% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQL 315 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L 315 (348)
+.+.++...+.|+.++..+=-..+.+-|+-|+.+++..+.-...-..-.+.=
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 4578888889999988888778888999999999988776665554444333
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.1 Score=46.09 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFV 335 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~v 335 (348)
.+-|..-.+.|+.=.+...|=-+|-.+|-.-+..|.+.|.|=-+-.-++.+|+.++.+-|.--.++.-.|+|.+..|+++
T Consensus 127 TerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~ 206 (220)
T KOG1666|consen 127 TERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIAL 206 (220)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566666677777778888888899999999999999999999999999999999999989999987755554
Q ss_pred HHHHHHHHHHH
Q 018979 336 LVVFLMIFLFF 346 (348)
Q Consensus 336 l~~f~l~f~~~ 346 (348)
+ +++++++|+
T Consensus 207 l-~~~il~ilY 216 (220)
T KOG1666|consen 207 L-VLAILLILY 216 (220)
T ss_pred H-HHHHHHHHH
Confidence 3 444444444
No 21
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.01 Score=54.86 Aligned_cols=94 Identities=10% Similarity=0.195 Sum_probs=77.2
Q ss_pred HhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhH
Q 018979 250 QMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLM 329 (348)
Q Consensus 250 ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~ 329 (348)
.+.++...-+++-+.+|..+..-..+|+.|-.+=+.+|..=.+-|++-..||+.+..++.+|. +|.+..++..|+.
T Consensus 173 ~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~----~yq~~~~k~~~~l 248 (269)
T KOG0811|consen 173 DLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA----KYQRKARKKKCIL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCchhhh
Confidence 344455667888899999999999999999999999999999999999999999999999998 5556666666888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 018979 330 LKIFFVLVVFLMIFLFFV 347 (348)
Q Consensus 330 ~~if~vl~~f~l~f~~~~ 347 (348)
++||+++++++.+.+++.
T Consensus 249 l~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 249 LLVGGPVGLIIGLIIAGI 266 (269)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 877777665555555543
No 22
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.10 E-value=0.012 Score=54.28 Aligned_cols=75 Identities=20% Similarity=0.406 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHH
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLM 341 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l 341 (348)
.+++-.+.+.+.+=... ++..+.+-..+|++....++.....++.....|.++.+.. .+.|++++||+|+++|++
T Consensus 169 ~~em~~La~~LK~~s~~---~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~-~~~~~~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLA---FSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS-WGCWTWLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 35566666665555544 4558999999999999999999999999999998876443 334444444555555543
No 23
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.015 Score=46.43 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDD 303 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~ 303 (348)
+.+++++..+.|+-+|.++=-.-|.|=|+-|+.|++-.+.
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~ 68 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH
Confidence 4567777788888899999888999999999999876543
No 24
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=96.91 E-value=0.044 Score=42.97 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHH
Q 018979 70 IGYGIHQTSQKLAKLAKLAKRTSVFDDPT---FEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTV 146 (348)
Q Consensus 70 I~~~I~~~~~~L~~L~~L~k~~~lf~d~~---~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nv 146 (348)
|...|..+...+..|.++.+.-+...|.+ +.|..+...+...++.+...|+.|..... ......+....
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~--------~~~~~~~~k~~ 72 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSS--------DRSNDRQQKLQ 72 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH------------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhhHHHHHH
Confidence 56677788888888888777766556665 56788888888888888988888876511 13344556667
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 147 VDNLKNRLMGTTKEFKEVLTMRTENLKV 174 (348)
Q Consensus 147 v~~L~~~L~~ls~~Fk~~~~~r~~~~k~ 174 (348)
..-|...|..+...|+.++..|.+..++
T Consensus 73 ~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 73 REKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777888888888888888877665543
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.67 E-value=0.041 Score=50.42 Aligned_cols=90 Identities=14% Similarity=0.273 Sum_probs=79.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHH
Q 018979 252 VPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLK 331 (348)
Q Consensus 252 ~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~ 331 (348)
..+.+..+..-++.|.++..-..+|+.+-.+=+++|.-=..-|+.+..|+..|.....+|. .+-++.++.|.|+++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~----~hqrrt~k~~~~~Ll 265 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAP----AHQRRTKKCRFYLLL 265 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhH----HHHhhhccchhhHHH
Confidence 3455677889999999999999999999999999999999999999999999999999998 566777888989998
Q ss_pred HHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLF 345 (348)
Q Consensus 332 if~vl~~f~l~f~~ 345 (348)
+|+|+++|+++.+.
T Consensus 266 il~vv~lfv~l~~k 279 (283)
T COG5325 266 ILLVVLLFVSLIKK 279 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888777654
No 26
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=1.1 Score=39.81 Aligned_cols=188 Identities=13% Similarity=0.186 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHH
Q 018979 70 IGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDN 149 (348)
Q Consensus 70 I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~ 149 (348)
+.+.+.++...|.+|.+..+. .++..+...|..+|.++...+..|.....+.++ ...+....+ +..
T Consensus 8 t~~~~~k~q~~l~rlE~~~~~--------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp---~~rq~~rlr---~dQ 73 (213)
T KOG3251|consen 8 TNRQLDKLQRGLIRLERTIKT--------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP---KSRQAARLR---VDQ 73 (213)
T ss_pred HHHHHHHHHHHHHHHHccccc--------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC---CcHHHHHHH---HHH
Confidence 344455555555555442221 466677778888888888888888877655432 234443333 556
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018979 150 LKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPS 229 (348)
Q Consensus 150 L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (348)
|...+..+-...+.....+..+.+.-++|.....+..... + +..+.|+
T Consensus 74 l~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~---~----------------~~~~~~~------------- 121 (213)
T KOG3251|consen 74 LLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNG---A----------------TGTSIPF------------- 121 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCC---C----------------ccCCCcc-------------
Confidence 6666666666666666655555555555443322111000 0 0000000
Q ss_pred ccCCCCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 230 KQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVE 309 (348)
Q Consensus 230 ~~~~~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~ 309 (348)
|+ .++ =++-+.+-++.|.++-..-..+-.=+.+|+-.|-.+-.-+-....-+.
T Consensus 122 ---D~-------------el~-----------~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLG 174 (213)
T KOG3251|consen 122 ---DE-------------ELQ-----------ENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLG 174 (213)
T ss_pred ---hH-------------HHH-----------hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 001 112344445555555555555555678899999888888888888888
Q ss_pred HHHHHHHHHHHHcccCchhHH
Q 018979 310 GAQSQLVRYLNSISSNRWLML 330 (348)
Q Consensus 310 ~g~~~L~ka~~~~~~~r~~~~ 330 (348)
-.+.-|.--.++...-+|+++
T Consensus 175 lSn~ti~lIeRR~~~Dk~iF~ 195 (213)
T KOG3251|consen 175 LSNQTIRLIERRVREDKIIFY 195 (213)
T ss_pred CcHHHHHHHHHHHHhhHHHHH
Confidence 777777777777776666544
No 27
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=95.46 E-value=0.49 Score=36.51 Aligned_cols=60 Identities=8% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHH
Q 018979 285 TMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLF 345 (348)
Q Consensus 285 ~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~~ 345 (348)
..+.+|.+.|..+.+.......-+..+.+-+.+..+....-||+++..|+ +++..++||+
T Consensus 29 ~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~-~f~~~v~yI~ 88 (92)
T PF03908_consen 29 QTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL-FFLLVVLYIL 88 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh
Confidence 35668888888888888888899999999998888888888877653333 2333344444
No 28
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=94.81 E-value=0.5 Score=42.40 Aligned_cols=85 Identities=8% Similarity=0.154 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFV 335 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~v 335 (348)
...+..-.+.+..|-.-..++.++-.+=..+|.-=...+..-..||+....++++|.+-. .|.+.++=..|.+|+|.++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avksa-RaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSA-RAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHH-HHHHhcceehhhhHHHHHH
Confidence 345565666666666666677777777667777666777778889999999999999885 4455556667766666665
Q ss_pred HHHHHH
Q 018979 336 LVVFLM 341 (348)
Q Consensus 336 l~~f~l 341 (348)
+|+.++
T Consensus 263 viv~vv 268 (280)
T COG5074 263 VIVVVV 268 (280)
T ss_pred HHHHHH
Confidence 555555
No 29
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=94.04 E-value=1.4 Score=39.36 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 018979 260 HSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNR 326 (348)
Q Consensus 260 ~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r 326 (348)
++-.+++-.+.+++.+-.--|+. -+.+=.+.+.+-..-++....-......-+.++.+...++.
T Consensus 154 eeLaesll~LArslKtnalAfqs---alkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~w 217 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAFQS---ALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYW 217 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHH
Confidence 34445555555555554444443 45555556666566666666667777777877777766544
No 30
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=4.7 Score=36.01 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018979 62 EFNKRASKIGYGIHQTSQKLAKLAKLAKR-TSVFDDPT-------FEIQELTAVIKQDITALNSAVVDLQLLCNSQNESG 133 (348)
Q Consensus 62 ~F~~~a~~I~~~I~~~~~~L~~L~~L~k~-~~lf~d~~-------~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~ 133 (348)
.|-..-++....=+++..+|-...++... .+-|++.. ..-..+..+|+..+.++.+-++.+.. +...
T Consensus 6 ~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s---- 80 (231)
T KOG3208|consen 6 SWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASS---- 80 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccC----
Confidence 34444344444444555577777766665 12233221 13455777888888888887777766 2221
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 134 NISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMR 168 (348)
Q Consensus 134 ~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r 168 (348)
+....|....+.--+..|++-++.|+.+...+
T Consensus 81 ---~a~~aa~~htL~RHrEILqdy~qef~rir~n~ 112 (231)
T KOG3208|consen 81 ---PANSAAVMHTLQRHREILQDYTQEFRRIRSNI 112 (231)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222233344567888888888887764
No 31
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=0.37 Score=44.76 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018979 262 RAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVR 317 (348)
Q Consensus 262 R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~k 317 (348)
-...+.+|-.-+..|..|--+|+..|..|.+.||+|.++|+....+|+..+..+++
T Consensus 216 iD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 216 IDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 34568888888999999999999999999999999999999999999999988865
No 32
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=92.08 E-value=2.1 Score=33.23 Aligned_cols=91 Identities=14% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCcc
Q 018979 62 EFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNES---GNISSD 138 (348)
Q Consensus 62 ~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~---~~~~~~ 138 (348)
+|+...++|...|..+...+.+...+....+ ...++..++.+++..+..+...|.+|+....-.... -+.+..
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~ 77 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHH
Confidence 5889999999999999998888666544333 557899999999999999999999999866532100 012334
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 018979 139 TTSHSTTVVDNLKNRLMG 156 (348)
Q Consensus 139 ~~~h~~nvv~~L~~~L~~ 156 (348)
+..-|...+..++.++..
T Consensus 78 Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555555555544
No 33
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=91.75 E-value=3.6 Score=29.34 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNS 321 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~ 321 (348)
+.+..-.+.+.|.-++-......+..|++.|.++...+.++..++..++.-|.+-.++
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 4567777778888888889999999999999999999999999999999888765443
No 34
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=2.7 Score=39.19 Aligned_cols=87 Identities=11% Similarity=0.296 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHH
Q 018979 254 LQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIF 333 (348)
Q Consensus 254 ~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if 333 (348)
+.+.++.+-.+.|..+..-..+|+.|-.+=++.|.-=.--|+.+-..++.+...+.+|- .|-++.++.+|++++++
T Consensus 215 erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 215 EREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceEehHHHHH
Confidence 45667888889999999999999999999999999888889999999999999998886 78999999998877777
Q ss_pred HHHHHHHHHHH
Q 018979 334 FVLVVFLMIFL 344 (348)
Q Consensus 334 ~vl~~f~l~f~ 344 (348)
+|+++++++.+
T Consensus 291 ~ii~llvllil 301 (305)
T KOG0809|consen 291 LIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHh
Confidence 77766666654
No 35
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=89.24 E-value=3.7 Score=44.36 Aligned_cols=66 Identities=15% Similarity=0.345 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHH
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFF 334 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~ 334 (348)
...+..+.+.+..++.-+..++..+..+ +...+..-...+...++.......+|-.| ||+..+++.
T Consensus 356 ~~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y----R~~~~lil~ 421 (806)
T PF05478_consen 356 SDVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY----RWIVGLILC 421 (806)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHHHHHH
Confidence 3455566777777777777777777776 55566666677777777777777777666 776554433
No 36
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=87.30 E-value=0.8 Score=32.30 Aligned_cols=28 Identities=11% Similarity=0.526 Sum_probs=11.9
Q ss_pred HHHHHHHHcccCchhHHHHHHHHHHHHHHHH
Q 018979 314 QLVRYLNSISSNRWLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 314 ~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~ 344 (348)
+..+..++.++.+|++ |+++++|+++++
T Consensus 27 ~~~k~qk~~~~~~~i~---~~~~i~~l~v~~ 54 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIF---FGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3334444444445543 444444444433
No 37
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=84.48 E-value=15 Score=27.71 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018979 258 YMHSRAEALHNVESTIHEL 276 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el 276 (348)
.+-+|.+.+..++..-.+|
T Consensus 25 ~ll~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 25 KLLERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHH
Confidence 3445555555555444333
No 38
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.18 E-value=5.9 Score=31.81 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 018979 303 DTLANVEGAQSQLV 316 (348)
Q Consensus 303 ~~~~~v~~g~~~L~ 316 (348)
.+...-+.+-..|+
T Consensus 71 ~~as~F~~~A~klk 84 (116)
T KOG0860|consen 71 AGASQFEKTAVKLK 84 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445554
No 39
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=83.55 E-value=15 Score=26.77 Aligned_cols=50 Identities=10% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHH
Q 018979 292 EIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 292 e~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~ 344 (348)
+-++.+|.+.......+...+.+|.+-.. ..+|++-.+.+.++.|++-|+
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~---n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKS---NTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433322 235776667777666665554
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=83.18 E-value=18 Score=33.22 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc---ccCchhHHHHHHHHHHHHHHHH
Q 018979 268 NVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSI---SSNRWLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 268 ~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~---~~~r~~~~~if~vl~~f~l~f~ 344 (348)
+|...|..|+.-.++=+... +..|..=..-++.+...++.-...|..+..+- .+..|.|+.++++++||+ +||
T Consensus 167 ~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~-~Fi 242 (251)
T PF09753_consen 167 DLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVII-VFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHH
Confidence 55555555555444433332 33333323334445555555555555444443 456677554444444444 444
No 41
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=80.73 E-value=3.2 Score=29.26 Aligned_cols=11 Identities=0% Similarity=0.368 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 018979 332 IFFVLVVFLMI 342 (348)
Q Consensus 332 if~vl~~f~l~ 342 (348)
...+++.++++
T Consensus 38 ~~~i~~~~~i~ 48 (59)
T PF09889_consen 38 TQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHH
Confidence 44443333333
No 42
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=77.50 E-value=55 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 258 YMHSRAEALHNVESTIHELGNIFTQLATM 286 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el~~lf~~l~~~ 286 (348)
-...|.++.++|-+++.+=..=|.+-+.-
T Consensus 65 ~qd~reK~~~~I~ssL~eTtkdf~~~~~k 93 (230)
T PF03904_consen 65 KQDIREKNLKEIKSSLEETTKDFIDKTEK 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888766666665433
No 43
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=76.59 E-value=78 Score=30.86 Aligned_cols=46 Identities=11% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 267 HNVESTIHELGNIF-TQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 267 ~~ie~~i~el~~lf-~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
..+|..+.++-++. ++|+.+=+++..|=.+++|.--+=..+|..+.
T Consensus 309 erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEal 355 (455)
T KOG3850|consen 309 ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEAL 355 (455)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554 57999999999999998887555444444443
No 44
>PHA02844 putative transmembrane protein; Provisional
Probab=74.89 E-value=3.5 Score=30.19 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=5.1
Q ss_pred cCchhHHHHHH
Q 018979 324 SNRWLMLKIFF 334 (348)
Q Consensus 324 ~~r~~~~~if~ 334 (348)
+..|+.++|++
T Consensus 45 ~~~~~~~ii~i 55 (75)
T PHA02844 45 SSSTKIWILTI 55 (75)
T ss_pred ChhHHHHHHHH
Confidence 34455544443
No 45
>PHA03054 IMV membrane protein; Provisional
Probab=74.13 E-value=3.5 Score=29.85 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=5.1
Q ss_pred cCchhHHHHHH
Q 018979 324 SNRWLMLKIFF 334 (348)
Q Consensus 324 ~~r~~~~~if~ 334 (348)
+..|+.++|.+
T Consensus 45 ~~~~~~~ii~l 55 (72)
T PHA03054 45 CWGWYWLIIIF 55 (72)
T ss_pred CchHHHHHHHH
Confidence 44455544433
No 46
>PHA02819 hypothetical protein; Provisional
Probab=72.78 E-value=4.2 Score=29.47 Aligned_cols=11 Identities=27% Similarity=-0.064 Sum_probs=5.0
Q ss_pred cCchhHHHHHH
Q 018979 324 SNRWLMLKIFF 334 (348)
Q Consensus 324 ~~r~~~~~if~ 334 (348)
+..|+.++|.+
T Consensus 43 ~~~~~~~ii~l 53 (71)
T PHA02819 43 SFLRYYLIIGL 53 (71)
T ss_pred ChhHHHHHHHH
Confidence 34455544433
No 47
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.92 E-value=13 Score=32.84 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRI 297 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~I 297 (348)
+.+-++...|.|+..+.-+==..|.+-||-|+-+
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 4566777778888777666556666666655444
No 48
>PHA02650 hypothetical protein; Provisional
Probab=69.64 E-value=5.3 Score=29.64 Aligned_cols=7 Identities=0% Similarity=-0.562 Sum_probs=3.2
Q ss_pred cCchhHH
Q 018979 324 SNRWLML 330 (348)
Q Consensus 324 ~~r~~~~ 330 (348)
+..|+.+
T Consensus 46 ~~~~~~~ 52 (81)
T PHA02650 46 WFNGQNF 52 (81)
T ss_pred CchHHHH
Confidence 4445444
No 49
>PHA02975 hypothetical protein; Provisional
Probab=69.04 E-value=6.9 Score=28.23 Aligned_cols=13 Identities=31% Similarity=0.513 Sum_probs=5.9
Q ss_pred ccCchhHHHHHHH
Q 018979 323 SSNRWLMLKIFFV 335 (348)
Q Consensus 323 ~~~r~~~~~if~v 335 (348)
++..|++++|+++
T Consensus 40 ~~~~~~~~ii~i~ 52 (69)
T PHA02975 40 KSSLSIILIIFII 52 (69)
T ss_pred CCchHHHHHHHHH
Confidence 3444555444433
No 50
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.09 E-value=44 Score=30.50 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018979 273 IHELGNIFTQLATMVSQQGEIAIRIDENMDD 303 (348)
Q Consensus 273 i~el~~lf~~l~~~V~~Qge~id~Id~nv~~ 303 (348)
+.++.++.++ |+.+|.+.+|.|...+..
T Consensus 136 v~~~~~~qqq---m~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 136 VQEIVQLQQQ---MLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5666666666 788888888888776543
No 51
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=68.07 E-value=8.4 Score=22.64 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=17.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHH
Q 018979 323 SSNRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 323 ~~~r~~~~~if~vl~~f~l~f~~~ 346 (348)
.+.|-+|+-+-.|+|-.++.|+++
T Consensus 3 ~strel~lnftvvlitvilmwllv 26 (31)
T PF05366_consen 3 RSTRELFLNFTVVLITVILMWLLV 26 (31)
T ss_dssp S-SSSSHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHH
Confidence 356777887778888888888875
No 52
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=67.99 E-value=9.7 Score=28.81 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=8.3
Q ss_pred HHHHHHHHHHccc
Q 018979 312 QSQLVRYLNSISS 324 (348)
Q Consensus 312 ~~~L~ka~~~~~~ 324 (348)
..||.+-..++++
T Consensus 19 ~DQL~qlVsrN~s 31 (84)
T PF06143_consen 19 YDQLEQLVSRNRS 31 (84)
T ss_pred HHHHHHHHHhChH
Confidence 5677777755554
No 53
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.85 E-value=41 Score=24.32 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
+.|..+|..+.-.-..-.+|...|.+|...|+++...+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888888888999999999999888887777776544
No 54
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=66.84 E-value=39 Score=23.64 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018979 265 ALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANV 308 (348)
Q Consensus 265 ~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v 308 (348)
+++.++..+..|-..|.....--..+++.++|+|.+++..-.++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999998765554
No 55
>PF14992 TMCO5: TMCO5 family
Probab=66.50 E-value=1.1e+02 Score=28.52 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 259 l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
+-.-..++.++++....++++-.+=+..+..=.+.|.+|++..+...-+.+-+.
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k 178 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSK 178 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777887777777777767777888876666655544333
No 56
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=66.38 E-value=5.4 Score=29.20 Aligned_cols=6 Identities=50% Similarity=1.409 Sum_probs=2.4
Q ss_pred hhHHHH
Q 018979 327 WLMLKI 332 (348)
Q Consensus 327 ~~~~~i 332 (348)
|++++|
T Consensus 48 ~~~~ii 53 (72)
T PF12575_consen 48 WIILII 53 (72)
T ss_pred HHHHHH
Confidence 444433
No 57
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=65.62 E-value=8.2 Score=25.60 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=11.8
Q ss_pred ccCchhHHHHHHHHHHH
Q 018979 323 SSNRWLMLKIFFVLVVF 339 (348)
Q Consensus 323 ~~~r~~~~~if~vl~~f 339 (348)
++.||.+++++++.++|
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 56799888666655555
No 58
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=64.11 E-value=66 Score=26.53 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHH
Q 018979 70 IGYGIHQTSQKLAKLAKLAKRT----SVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTT 145 (348)
Q Consensus 70 I~~~I~~~~~~L~~L~~L~k~~----~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~n 145 (348)
.-..+..+...|.+|......- .-+....+.-..+...+...+..++.....++...+.-... . ..........
T Consensus 4 F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~-~-~~~~~~~~s~ 81 (151)
T cd00179 4 FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEES-N-EQNEALNGSS 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhcccCCcH
Confidence 4455667777777766544332 11111111122344444444444444444444433322100 0 0000000234
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018979 146 VVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFS 183 (348)
Q Consensus 146 vv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~ 183 (348)
.....+.+...++..|++++..|.......+++++...
T Consensus 82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i 119 (151)
T cd00179 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERI 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999988888777776544
No 59
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=63.25 E-value=9.2 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.853 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 018979 326 RWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 326 r~~~~~if~vl~~f~l~f~~~ 346 (348)
||+++ +|.+.|+|.+++++.
T Consensus 22 ~ww~~-~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 22 RWWLW-LFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHH-HHHHHHHHHHHHHHH
Confidence 45555 677778888887764
No 60
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.82 E-value=1.4e+02 Score=28.11 Aligned_cols=49 Identities=6% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
..|.+|-.-..+|+.|-.+=.+++..=.+.+|.+|-|++.|..-+-+--
T Consensus 234 stIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~ 282 (311)
T KOG0812|consen 234 STISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYF 282 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 3444444445555555555555555556666667777777766654433
No 61
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=62.25 E-value=22 Score=35.15 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHcccCchhHHHHHHHHHHHHHHHHH
Q 018979 317 RYLNSISSNRWLMLKIFFVLVVFLMIFLF 345 (348)
Q Consensus 317 ka~~~~~~~r~~~~~if~vl~~f~l~f~~ 345 (348)
+...+....||+..+.++++.+++.+|.+
T Consensus 176 ~~~~~~E~yRw~~~~~lL~l~l~icl~~l 204 (406)
T PF04906_consen 176 EQVSFYEYYRWLAYLGLLILDLVICLLGL 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445589877666555444444443
No 62
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.37 E-value=37 Score=31.72 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018979 274 HELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYL 319 (348)
Q Consensus 274 ~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~ 319 (348)
.|....-..-..++.+|++.|++|+.+++........|.+.|..-.
T Consensus 89 ~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 89 EESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3444444557788999999999999999999999988888775433
No 63
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=61.06 E-value=97 Score=27.98 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 018979 264 EALHNVES 271 (348)
Q Consensus 264 ~~i~~ie~ 271 (348)
+++..++.
T Consensus 104 ~~Lk~V~t 111 (230)
T PF03904_consen 104 DELKDVDT 111 (230)
T ss_pred HHHHhhch
Confidence 34444433
No 64
>PHA02414 hypothetical protein
Probab=60.75 E-value=77 Score=24.59 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 265 ALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVE 309 (348)
Q Consensus 265 ~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~ 309 (348)
+-..++..+.||..|-.-|..-|.-|.|---.|.+.++.-.+.|+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 446678888899988888888888888888888888876655554
No 65
>PHA02692 hypothetical protein; Provisional
Probab=60.33 E-value=15 Score=26.68 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=4.4
Q ss_pred ccCchhHHHH
Q 018979 323 SSNRWLMLKI 332 (348)
Q Consensus 323 ~~~r~~~~~i 332 (348)
++..|+.+++
T Consensus 41 ~~~~~~~~ii 50 (70)
T PHA02692 41 KGVPWTTVFL 50 (70)
T ss_pred CCcchHHHHH
Confidence 3444554433
No 66
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.88 E-value=27 Score=34.46 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHH
Q 018979 269 VESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLF 345 (348)
Q Consensus 269 ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~~ 345 (348)
+...+.....+|-++-.....-||.--+++.-.+...++.++- .++++-.+..--....++.+.+++++|++.||+
T Consensus 110 ls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~~-~~lr~Ki~~Al~YP~vll~v~~~v~~~Ll~~Vv 185 (397)
T COG1459 110 LSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEKQ-AALRKKIKSALIYPLVLLVVALVVVLFLLIFVV 185 (397)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566666666667777666666666666655542 222222222222355555455555666666665
No 67
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.86 E-value=84 Score=28.16 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018979 266 LHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDD 303 (348)
Q Consensus 266 i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~ 303 (348)
+.++.....++..+...=-..|..=|+.++..+.-...
T Consensus 136 ~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~ 173 (216)
T KOG0862|consen 136 LLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASE 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhc
Confidence 44444445555555555445555666666666554443
No 68
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.64 E-value=80 Score=24.07 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=9.9
Q ss_pred HHHHHcccCchhHHHH
Q 018979 317 RYLNSISSNRWLMLKI 332 (348)
Q Consensus 317 ka~~~~~~~r~~~~~i 332 (348)
.+..|.+.++|.-+.|
T Consensus 64 ~~~~~V~e~P~~svgi 79 (94)
T PF05957_consen 64 QTEDYVRENPWQSVGI 79 (94)
T ss_pred HHHHHHHHChHHHHHH
Confidence 3445677788875533
No 69
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.54 E-value=1e+02 Score=25.27 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 018979 61 SEFNKRASKIGYGIHQTSQKLAKLAK-LAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDT 139 (348)
Q Consensus 61 ~~F~~~a~~I~~~I~~~~~~L~~L~~-L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~ 139 (348)
..+.+.+..|.+.+.++..-|..-++ |.+|---.+++-++..+++..|+..+..++..+..+......
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~----------- 107 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS----------- 107 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------
Confidence 34566777777777777777765222 112211135555777778888888888888877776643322
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 018979 140 TSHSTTVVDNLKNRLMGT 157 (348)
Q Consensus 140 ~~h~~nvv~~L~~~L~~l 157 (348)
-+.+|..|..++..+
T Consensus 108 ---v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 108 ---VQQMVEGLEGKIDEI 122 (126)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 235667777777655
No 70
>PHA03240 envelope glycoprotein M; Provisional
Probab=58.16 E-value=9.2 Score=34.06 Aligned_cols=17 Identities=12% Similarity=0.626 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018979 328 LMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 328 ~~~~if~vl~~f~l~f~ 344 (348)
||+++++|++||+|+|+
T Consensus 215 WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 215 WIFIAIIIIIVIILFFF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34334444445554443
No 71
>PHA02675 ORF104 fusion protein; Provisional
Probab=58.06 E-value=79 Score=23.83 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Q 018979 268 NVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISS 324 (348)
Q Consensus 268 ~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~ 324 (348)
.||..+..|-.+|..+...-..=++.|+|++.+++..-.++ -.|.|-+..+.+
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M----l~L~KKIDVQTG 86 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL----LKLNTKIDVQTG 86 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcceecc
Confidence 34555566668899998899999999999999988765444 344444444433
No 72
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=57.26 E-value=93 Score=24.45 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANV 308 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v 308 (348)
+.|..+...+.-.++--..+...+.-||++|+.|...+......+
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555656666666666666666666666666555444433
No 73
>PRK04325 hypothetical protein; Provisional
Probab=56.75 E-value=77 Score=23.31 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018979 265 ALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGA 311 (348)
Q Consensus 265 ~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g 311 (348)
.|..||..+.-.-..-.+|+..|.+|...|+++...+..-.+.++..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37777888877777778888889999999988887777766666543
No 74
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=54.12 E-value=64 Score=21.62 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Q 018979 269 VESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSI 322 (348)
Q Consensus 269 ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~ 322 (348)
-...+..|.....++..|..+=+.+|..=..-++....+++.+...+.++.++.
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777777777776666667777777777777776666553
No 75
>PF14992 TMCO5: TMCO5 family
Probab=53.45 E-value=2e+02 Score=27.00 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKL 87 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L 87 (348)
...|+...++-...|..+...+.+...+
T Consensus 20 Nq~lL~ki~~~E~~iq~Le~Eit~~~~~ 47 (280)
T PF14992_consen 20 NQSLLQKIQEKEGAIQSLEREITKMDHI 47 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4457777777777777776666554443
No 76
>PRK02119 hypothetical protein; Provisional
Probab=53.37 E-value=88 Score=22.95 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
+.|..||..+.-.-..-.+|...|.+|...|+++...+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55777788888888888888888999999998888777776666554
No 77
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=53.24 E-value=12 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.899 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018979 329 MLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 329 ~~~if~vl~~f~l~f~~~ 346 (348)
+++++-++|+|+.+|++.
T Consensus 4 ilKFvY~mIiflslflv~ 21 (54)
T PF07127_consen 4 ILKFVYAMIIFLSLFLVV 21 (54)
T ss_pred chhhHHHHHHHHHHHHhh
Confidence 456777778888777764
No 78
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=52.44 E-value=18 Score=27.28 Aligned_cols=15 Identities=33% Similarity=0.957 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLFF 346 (348)
Q Consensus 332 if~vl~~f~l~f~~~ 346 (348)
|+++|+|++||.++|
T Consensus 30 ILivLVIIiLlImlf 44 (85)
T PF10717_consen 30 ILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 79
>PRK14762 membrane protein; Provisional
Probab=52.07 E-value=21 Score=20.41 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=4.7
Q ss_pred hhHHHHHHH
Q 018979 327 WLMLKIFFV 335 (348)
Q Consensus 327 ~~~~~if~v 335 (348)
|.+.+||++
T Consensus 6 w~i~iifli 14 (27)
T PRK14762 6 WAVLIIFLI 14 (27)
T ss_pred HHHHHHHHH
Confidence 555555543
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.18 E-value=1.5e+02 Score=29.36 Aligned_cols=61 Identities=10% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018979 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYL 319 (348)
Q Consensus 259 l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~ 319 (348)
+.+-..+|...++.|.+..+-+..|-.++.++.+-|..|+..+-.+...++.-...|....
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 4455578899999999999999999999999999999999888888777666666554433
No 81
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.95 E-value=2.6e+02 Score=27.65 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH
Q 018979 289 QQGEIAIRIDENMDDTLANVEGAQ-SQLVRYLN 320 (348)
Q Consensus 289 ~Qge~id~Id~nv~~~~~~v~~g~-~~L~ka~~ 320 (348)
+=.|-.-.|+++++.....|.+=- .++.++.+
T Consensus 295 qs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q 327 (395)
T PF10267_consen 295 QSYERARDIWEVMESCQTRISKLEQQQQQQVVQ 327 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445566678888888887777654 34445543
No 82
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=50.77 E-value=23 Score=24.88 Aligned_cols=13 Identities=23% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 018979 335 VLVVFLMIFLFFV 347 (348)
Q Consensus 335 vl~~f~l~f~~~~ 347 (348)
++++|..++..|+
T Consensus 44 ~~c~~S~~lG~~~ 56 (60)
T PF06072_consen 44 ALCVLSGGLGALV 56 (60)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 83
>PRK00295 hypothetical protein; Provisional
Probab=50.76 E-value=93 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018979 265 ALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGA 311 (348)
Q Consensus 265 ~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g 311 (348)
.|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+...
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37778888888888888888899999999998888777776666553
No 84
>PRK00736 hypothetical protein; Provisional
Probab=50.51 E-value=93 Score=22.44 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 265 ALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 265 ~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
.|..||..+.-.-..-.+|...|.+|...|+++...+..-.+.+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777777888888999999999888877777666654
No 85
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=49.76 E-value=20 Score=27.12 Aligned_cols=8 Identities=38% Similarity=1.177 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018979 332 IFFVLVVF 339 (348)
Q Consensus 332 if~vl~~f 339 (348)
+|.++++|
T Consensus 45 VfVii~lF 52 (84)
T PF06143_consen 45 VFVIIVLF 52 (84)
T ss_pred HHHHHHHH
Confidence 33333333
No 86
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=49.63 E-value=26 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 018979 146 VVDNLKNRLMGTTKEFKE 163 (348)
Q Consensus 146 vv~~L~~~L~~ls~~Fk~ 163 (348)
+...|..+|.+++..|..
T Consensus 179 lgi~L~~YltElttvFg~ 196 (490)
T PF00523_consen 179 LGISLNQYLTELTTVFGP 196 (490)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344566677777777765
No 87
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=49.09 E-value=1.2e+02 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018979 266 LHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTL 305 (348)
Q Consensus 266 i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~ 305 (348)
|..+|..-..+..=+.++-.=+..|....++.|.+++...
T Consensus 13 i~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 13 IRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 4444444444444444455566778888888888887743
No 88
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=48.97 E-value=2.1e+02 Score=25.93 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHcccCchhHHHHHHH
Q 018979 268 NVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY----LNSISSNRWLMLKIFFV 335 (348)
Q Consensus 268 ~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka----~~~~~~~r~~~~~if~v 335 (348)
+|..++.-|+.-|...+ +.- +..|+.=-.-+..+.--++....-|..+ .+|.++.+..|+.+-.+
T Consensus 155 eLaesll~LArslKtna--lAf-qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~mi 223 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNA--LAF-QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMI 223 (244)
T ss_pred HHHHHHHHHHHHHHHhH--HHH-HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHH
Confidence 45555555555555533 223 3334332223334444444444455443 34555666667655443
No 89
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=47.75 E-value=22 Score=27.90 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcccCchhH
Q 018979 310 GAQSQLVRYLNSISSNRWLM 329 (348)
Q Consensus 310 ~g~~~L~ka~~~~~~~r~~~ 329 (348)
.|..-|...+.+..+++|-=
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN 51 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRN 51 (103)
T ss_pred eHHHHHhhhccccccchhhh
Confidence 45667777888888888863
No 90
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=47.52 E-value=1.3e+02 Score=23.33 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018979 145 TVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENR 178 (348)
Q Consensus 145 nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R 178 (348)
............++..|++++..|....+..+++
T Consensus 82 ~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 82 ASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888889999999999997766655544
No 91
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.43 E-value=1.1e+02 Score=22.35 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
+.|..||..+.-.-..-.+|+..|.+|...|+++...+..-.+.+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777788888889998888888777666665544
No 92
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=46.32 E-value=37 Score=23.03 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=9.9
Q ss_pred HHHHHHHcccCchhHH
Q 018979 315 LVRYLNSISSNRWLML 330 (348)
Q Consensus 315 L~ka~~~~~~~r~~~~ 330 (348)
.+.+.++-++||.-++
T Consensus 5 ~~~~~~~f~~nk~a~~ 20 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVI 20 (56)
T ss_pred HHHHHHHHHhCchHHH
Confidence 4566777777775443
No 93
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=44.83 E-value=3.8e+02 Score=27.79 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=42.6
Q ss_pred CCcCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 8 SSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKL 87 (348)
Q Consensus 8 ~~~~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L 87 (348)
.++......|.+..+++.... .....+..+...|+.+...|+.+...|.+|...
T Consensus 107 ~sl~~~L~~ff~s~q~la~~P--------------------------~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~ 160 (552)
T COG1256 107 SSLSTLLNDFFNSLQELASNP--------------------------SDTAARQAVLSKAQTLVNQINNTYEQLTDLRKD 160 (552)
T ss_pred ccHHHHHHHHHHHHHHHHhCc--------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888988888887421 112346679999999999999999999998765
Q ss_pred Hh
Q 018979 88 AK 89 (348)
Q Consensus 88 ~k 89 (348)
..
T Consensus 161 i~ 162 (552)
T COG1256 161 IN 162 (552)
T ss_pred Hh
Confidence 44
No 94
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=44.33 E-value=36 Score=22.41 Aligned_cols=19 Identities=21% Similarity=0.640 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 018979 328 LMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 328 ~~~~if~vl~~f~l~f~~~ 346 (348)
+.+-+.+++|..+++++++
T Consensus 31 lfvnfclilicllli~iiv 49 (52)
T PF04272_consen 31 LFVNFCLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544
No 95
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=43.66 E-value=64 Score=31.57 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHH
Q 018979 269 VESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLA---NVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 269 ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~---~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~l~f~ 344 (348)
+...+.+...+|.++...+..-||.--++++-.....+ ...+-..++.+|..| ..+++.+.+++++|++.|+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~~~~~~~~~~~i~~al~Y----P~~ll~~~~~v~~~~~~~v 185 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQQEAQQQLTKKVKKALRY----PLIILAVALLVVLAMLHFV 185 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44444444445555444444555555555554444444 333444445555554 4444333333333443333
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.43 E-value=29 Score=28.27 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=4.5
Q ss_pred hHHHHHHHH
Q 018979 328 LMLKIFFVL 336 (348)
Q Consensus 328 ~~~~if~vl 336 (348)
++++||+|+
T Consensus 66 i~~Ii~gv~ 74 (122)
T PF01102_consen 66 IIGIIFGVM 74 (122)
T ss_dssp HHHHHHHHH
T ss_pred eeehhHHHH
Confidence 445555544
No 97
>PRK04406 hypothetical protein; Provisional
Probab=42.15 E-value=1.4e+02 Score=22.04 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
..|..||..+.-.-..-.+|+..|.+|...|+++...+......+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777778888888888888887777666555543
No 98
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=42.02 E-value=1.5e+02 Score=22.24 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh
Q 018979 98 TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTT 158 (348)
Q Consensus 98 ~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls 158 (348)
..+|..+...++..|..+...... ..... .+..+...+.|.+..|..+|+++.
T Consensus 51 ~~~i~~~~~~~~~~lk~l~~~~~~---~~~~~-----~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 51 TDEIKQLFQKIKKRLKQLSKDNED---SEGEE-----PSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHCTT-------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---hcccC-----CCcHHHHHHHHHHHHHHHHHHHHC
Confidence 478999999999999999999772 12222 256788999999999999999874
No 99
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=41.52 E-value=37 Score=23.70 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLFF 346 (348)
Q Consensus 332 if~vl~~f~l~f~~~ 346 (348)
+.+++++|++.|-+|
T Consensus 12 Vi~l~vl~~~~Ftl~ 26 (58)
T PF13314_consen 12 VIILIVLFGASFTLF 26 (58)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555544
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.01 E-value=1.6e+02 Score=23.91 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 93 VFDDPTFEIQELTAVIKQDITALNSAVVD 121 (348)
Q Consensus 93 lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~ 121 (348)
+++++..++++|...|...=.-++.+|+.
T Consensus 90 llGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 90 LLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777776665444444444443
No 101
>COG5346 Predicted membrane protein [Function unknown]
Probab=40.10 E-value=1.3e+02 Score=24.54 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 018979 329 MLKIFFVLVV 338 (348)
Q Consensus 329 ~~~if~vl~~ 338 (348)
|+.||++.+|
T Consensus 93 l~liFgi~LV 102 (136)
T COG5346 93 LLLIFGIFLV 102 (136)
T ss_pred HHHHHHHHHH
Confidence 3445554443
No 102
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=40.00 E-value=23 Score=25.93 Aligned_cols=23 Identities=17% Similarity=0.543 Sum_probs=13.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 018979 324 SNRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 324 ~~r~~~~~if~vl~~f~l~f~~~ 346 (348)
++.|.-.+++++.++|+++.++|
T Consensus 42 ~~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 42 NNKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 34566666777766665554443
No 103
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=39.08 E-value=14 Score=37.89 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQD-------ITALNSAVVDLQLL 125 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~-------i~~~~~~I~~Lq~~ 125 (348)
-..|.+....|...+..+..-|.|+....... ......|+..+... |..+..+++.|++.
T Consensus 254 A~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q------~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAd 320 (610)
T PF01601_consen 254 ANSFNKAIGNIQLGFTTTASALNKIQDVVNQQ------GQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhc
Confidence 34699999999999999999888876655433 24455566555444 55555566666543
No 104
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=38.48 E-value=1.5e+02 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 018979 300 NMDDTLANVEGAQSQLVR 317 (348)
Q Consensus 300 nv~~~~~~v~~g~~~L~k 317 (348)
-.+...+.|+..+.|+-+
T Consensus 20 rLd~iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 20 RLDEIEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 334455556666666643
No 105
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.36 E-value=3e+02 Score=25.00 Aligned_cols=109 Identities=11% Similarity=0.185 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcC
Q 018979 59 IQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRT-SVFDDPTFEIQELTAVIKQD-------ITALNSAVVDLQLLCNSQN 130 (348)
Q Consensus 59 ~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~-~lf~d~~~eI~~Lt~~Ik~~-------i~~~~~~I~~Lq~~~~~~~ 130 (348)
....|..........+..+...++.|....++. ...++...+|++|...|... .--+.+-++.|+.++....
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355677777777777777777777766644432 11233334455444444322 3334455566766665432
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHH
Q 018979 131 ESGNISSDTTSHSTTVVDNLKNRL----MGTTKEFKEVLTMRTENLK 173 (348)
Q Consensus 131 ~~~~~~~~~~~h~~nvv~~L~~~L----~~ls~~Fk~~~~~r~~~~k 173 (348)
+ ...+ -|..=+..|+.-+ -.++..|+.+++.|...+.
T Consensus 123 P---f~~~---eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~ 163 (251)
T PF11932_consen 123 P---FLLE---ERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEME 163 (251)
T ss_pred C---CChH---HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 1111 1222234555555 3567789999999976553
No 106
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=37.54 E-value=26 Score=27.47 Aligned_cols=8 Identities=0% Similarity=0.671 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 018979 337 VVFLMIFL 344 (348)
Q Consensus 337 ~~f~l~f~ 344 (348)
++|+|+++
T Consensus 73 ~IlVily~ 80 (101)
T PF06024_consen 73 CILVILYA 80 (101)
T ss_pred HHHHHHhh
Confidence 34444443
No 107
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.37 E-value=2.5e+02 Score=26.29 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=27.5
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCCCCHHHHHHHHHHHHH
Q 018979 58 AIQSEFNKRASKIGYGIHQTSQKLAKL-AKLAKRTSVFDDPTFEIQELTAVIKQ 110 (348)
Q Consensus 58 ~~~~~F~~~a~~I~~~I~~~~~~L~~L-~~L~k~~~lf~d~~~eI~~Lt~~Ik~ 110 (348)
+.+.+++.=.+.=.--|+.++.+|.+- .+|| |+..||++|.....+
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~-------dRetEI~eLksQL~R 100 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLH-------DRETEIDELKSQLAR 100 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHH
Confidence 445566665555566677788777662 2233 445788877655443
No 108
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=37.12 E-value=38 Score=19.65 Aligned_cols=7 Identities=14% Similarity=0.956 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 018979 338 VFLMIFL 344 (348)
Q Consensus 338 ~f~l~f~ 344 (348)
+|+++.|
T Consensus 14 LFILLII 20 (26)
T TIGR01732 14 LFILLVI 20 (26)
T ss_pred HHHHHHH
Confidence 3343333
No 109
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.33 E-value=3.1e+02 Score=24.40 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 281 TQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316 (348)
Q Consensus 281 ~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ 316 (348)
.++..-+.+-...+..++..-......+.....++.
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455554444555554554443
No 110
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=36.27 E-value=38 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018979 329 MLKIFFVLVVFLMIFLFFV 347 (348)
Q Consensus 329 ~~~if~vl~~f~l~f~~~~ 347 (348)
.+.+.++-+||++||+|.+
T Consensus 12 ~L~vlGmg~VflfL~iLi~ 30 (84)
T COG3630 12 TLMVLGMGFVFLFLSILIY 30 (84)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4446666677777776654
No 111
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=35.48 E-value=3.6e+02 Score=25.11 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSA 118 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~ 118 (348)
.++|.+.-..-++.|..++.-...+..+.+.. .+|..++..+++.+..+.+.
T Consensus 216 ksEWA~V~~AwkneLsEINSI~~gvEeLkKLA-------qEIss~Sn~lk~TIseLEKk 267 (353)
T PF01540_consen 216 KSEWARVQEAWKNELSEINSIIKGVEELKKLA-------QEISSHSNKLKATISELEKK 267 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 46777777777888877776555555554433 57777777777776666643
No 112
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=34.63 E-value=36 Score=19.30 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 018979 337 VVFLMIFLF 345 (348)
Q Consensus 337 ~~f~l~f~~ 345 (348)
++|+|+.++
T Consensus 11 VLFILLiIv 19 (24)
T PF09680_consen 11 VLFILLIIV 19 (24)
T ss_pred HHHHHHHHh
Confidence 344444443
No 113
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=34.37 E-value=1.6e+02 Score=20.36 Aligned_cols=55 Identities=18% Similarity=0.454 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 62 EFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLC 126 (348)
Q Consensus 62 ~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~ 126 (348)
.|...++..+-.+.++...+ .+ .++....+......+......+..+|+.|+...
T Consensus 5 ~~I~~~r~lGfsL~eI~~~l-~l---------~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 5 QFIRRLRELGFSLEEIRELL-EL---------YDQGDPPCADRRALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp HHHHHHHHTT--HHHHHHHH-HH---------CCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-hc---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999998888 22 233334555566778888888888888887654
No 114
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.10 E-value=1.8e+02 Score=25.83 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018979 260 HSRAEALHNVESTIHELGN 278 (348)
Q Consensus 260 ~~R~~~i~~ie~~i~el~~ 278 (348)
.+|.......|+++.+|+.
T Consensus 127 ~~~~~~~~~mena~~~I~~ 145 (209)
T KOG1693|consen 127 SNRDTALTQMENAIVEIHR 145 (209)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 4455566666776666653
No 115
>PF15102 TMEM154: TMEM154 protein family
Probab=33.93 E-value=20 Score=30.05 Aligned_cols=21 Identities=33% Similarity=0.535 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 018979 327 WLMLKIFFVLVVFLMIFLFFV 347 (348)
Q Consensus 327 ~~~~~if~vl~~f~l~f~~~~ 347 (348)
.+|++|=+||++++||+++|+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~l 78 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCL 78 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHh
Confidence 455555556666666666654
No 116
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.87 E-value=5.4e+02 Score=29.30 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhH
Q 018979 65 KRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPT-FEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHS 143 (348)
Q Consensus 65 ~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~-~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~ 143 (348)
..|.+....+..+....+...+|..++-.-+... ..++.|...-+..+...+..++.|+.+..... .+++...-.
T Consensus 1654 ~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~----~~~~~L~~~ 1729 (1758)
T KOG0994|consen 1654 EQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYL----RNEQALEDK 1729 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 144 TTVVDNLKNRLMGTTKEFKEVLTMRTE 170 (348)
Q Consensus 144 ~nvv~~L~~~L~~ls~~Fk~~~~~r~~ 170 (348)
...+.-|..++..+....+.....|..
T Consensus 1730 ~aeL~~Le~r~~~vl~~I~~rv~~y~t 1756 (1758)
T KOG0994|consen 1730 AAELAGLEKRVESVLDHINERVLYYAT 1756 (1758)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhc
No 117
>PF15106 TMEM156: TMEM156 protein family
Probab=33.55 E-value=37 Score=30.22 Aligned_cols=17 Identities=29% Similarity=1.018 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 018979 327 WLMLKIFFVLVVFLMIFLF 345 (348)
Q Consensus 327 ~~~~~if~vl~~f~l~f~~ 345 (348)
|+++ .+++++|+++|++
T Consensus 178 WYvL--VllVfiflii~iI 194 (226)
T PF15106_consen 178 WYVL--VLLVFIFLIILII 194 (226)
T ss_pred HHHH--HHHHHHHHHHHHH
Confidence 5544 3333555555543
No 118
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=33.45 E-value=65 Score=21.24 Aligned_cols=14 Identities=21% Similarity=0.671 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLF 345 (348)
Q Consensus 332 if~vl~~f~l~f~~ 345 (348)
+.+++|..+++.++
T Consensus 35 f~lilicllli~ii 48 (52)
T TIGR01294 35 FCLILICLLLICII 48 (52)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 119
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.51 E-value=1e+02 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018979 98 TFEIQELTAVIKQDITALNSAVVDLQLLCNSQ 129 (348)
Q Consensus 98 ~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~ 129 (348)
..|-..+-..|+..+...+..|.++.-.+..-
T Consensus 31 ~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l 62 (220)
T KOG1666|consen 31 GSEKKQLLSEIDSKLEEANELLDQMDLEVREL 62 (220)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 35556677788888888888888887766544
No 120
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=32.36 E-value=1.5e+02 Score=26.97 Aligned_cols=18 Identities=0% Similarity=0.095 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 018979 327 WLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 327 ~~~~~if~vl~~f~l~f~ 344 (348)
+|++++++.+|++.|.|+
T Consensus 200 ~Wv~l~iG~iIi~tLtYv 217 (232)
T PF09577_consen 200 IWVMLSIGGIIIATLTYV 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556777778887776
No 121
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=32.03 E-value=1.4e+02 Score=29.21 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 272 TIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 272 ~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
.+.+...+|-++..-+..-||.--++++......++.+.
T Consensus 116 al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 116 ALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred HHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 333334455555555555555555555555555555544
No 122
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=31.61 E-value=48 Score=24.92 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLF 345 (348)
Q Consensus 332 if~vl~~f~l~f~~ 345 (348)
+++..+||++|.+|
T Consensus 12 v~GM~~VF~fL~lL 25 (82)
T TIGR01195 12 VLGMGIVFLFLSLL 25 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 45544454444433
No 123
>PHA02844 putative transmembrane protein; Provisional
Probab=31.55 E-value=59 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 018979 327 WLMLKIFFVLVVFL 340 (348)
Q Consensus 327 ~~~~~if~vl~~f~ 340 (348)
|.-..+++++++|+
T Consensus 45 ~~~~~~~ii~i~~v 58 (75)
T PHA02844 45 SSSTKIWILTIIFV 58 (75)
T ss_pred ChhHHHHHHHHHHH
Confidence 44444444443333
No 124
>PRK14710 hypothetical protein; Provisional
Probab=31.08 E-value=58 Score=23.68 Aligned_cols=18 Identities=11% Similarity=0.530 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 018979 327 WLMLKIFFVLVVFLMIFL 344 (348)
Q Consensus 327 ~~~~~if~vl~~f~l~f~ 344 (348)
+++++||.++|+.++..+
T Consensus 10 km~ififaiii~v~lcv~ 27 (86)
T PRK14710 10 KMIIFIFAIIIIVVLCVI 27 (86)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566777777666665543
No 125
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=30.99 E-value=3.4e+02 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=9.6
Q ss_pred cccCchhHHHHHHHHH
Q 018979 322 ISSNRWLMLKIFFVLV 337 (348)
Q Consensus 322 ~~~~r~~~~~if~vl~ 337 (348)
..+.||..+.+++.|.
T Consensus 205 yE~~RW~~~v~lL~l~ 220 (526)
T KOG4433|consen 205 YESYRWLAYVLLLTLL 220 (526)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467997665555443
No 126
>PHA02690 hypothetical protein; Provisional
Probab=30.68 E-value=2.3e+02 Score=21.16 Aligned_cols=15 Identities=27% Similarity=0.791 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLFF 346 (348)
Q Consensus 332 if~vl~~f~l~f~~~ 346 (348)
+=+++.+|++.+|+|
T Consensus 46 fDL~lTvfV~myiv~ 60 (90)
T PHA02690 46 FDLLLTVFVVMYIVF 60 (90)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666664
No 127
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=30.63 E-value=93 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=8.5
Q ss_pred HHHHHHHcccCchhHHHHHHHHHH
Q 018979 315 LVRYLNSISSNRWLMLKIFFVLVV 338 (348)
Q Consensus 315 L~ka~~~~~~~r~~~~~if~vl~~ 338 (348)
|.|-.++++.. ++++|+++++
T Consensus 33 l~ker~R~r~~---~~~~~li~aL 53 (64)
T COG4068 33 LNKERKRQRNF---MILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHH---HHHHHHHHHH
Confidence 44444444333 3334444333
No 128
>PRK00846 hypothetical protein; Provisional
Probab=30.57 E-value=2.3e+02 Score=21.11 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
..|..+|..+.-.-..-.+|...|..|...|+++-..+..-.+.++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466677777777777777778888888888888887777766665543
No 129
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=30.32 E-value=4.8e+02 Score=26.70 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVE 309 (348)
Q Consensus 257 ~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~ 309 (348)
..+..-.+.+.+|...+.++.++..+++.-+.+|...++.|..++.....-.+
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~ 485 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQ 485 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667889999999999999999999999999999998888766544433
No 130
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=30.28 E-value=2.3e+02 Score=21.01 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 018979 327 WLMLKIFFVLVVFLMIFLFFV 347 (348)
Q Consensus 327 ~~~~~if~vl~~f~l~f~~~~ 347 (348)
|++..|+.+|+.|-.+|-+++
T Consensus 53 l~l~ail~lL~a~Ya~fyl~l 73 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555543
No 131
>PRK09793 methyl-accepting protein IV; Provisional
Probab=30.21 E-value=5.1e+02 Score=26.31 Aligned_cols=53 Identities=9% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 258 YMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
.+..-...+..|...+.++.+...+++..+.+|...++.|..++.....-++.
T Consensus 430 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~ 482 (533)
T PRK09793 430 LVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567888888999999999999999999999988887777665444333
No 132
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=29.97 E-value=2.8e+02 Score=21.86 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018979 261 SRAEALHNVESTIH--ELGNIFTQLATMVSQQGEIAIRIDENMDDTLANV 308 (348)
Q Consensus 261 ~R~~~i~~ie~~i~--el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v 308 (348)
+-...+.+||..+. -.++=...+..-|.-|||.|..+...+...-..+
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL 83 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTL 83 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888 6677777788888889998888776666433333
No 133
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.49 E-value=4.6e+02 Score=24.99 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHHHHHHHHH
Q 018979 275 ELGNIFTQLATMVSQQGEIAI----RIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFL 340 (348)
Q Consensus 275 el~~lf~~l~~~V~~Qge~id----~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if~vl~~f~ 340 (348)
.|+.+|.+=-.+=.++=+.|- +++.|+.+..+.|.+| .......+..-.+.++++...+.|+
T Consensus 246 ~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka----~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 246 ALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKA----KRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHH
Confidence 345555444444444433332 4666666666555544 4666666666544444444444444
No 134
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.32 E-value=47 Score=25.99 Aligned_cols=12 Identities=25% Similarity=0.622 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 018979 336 LVVFLMIFLFFV 347 (348)
Q Consensus 336 l~~f~l~f~~~~ 347 (348)
++.|++++|++.
T Consensus 68 lls~v~IlVily 79 (101)
T PF06024_consen 68 LLSFVCILVILY 79 (101)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 135
>PHA02819 hypothetical protein; Provisional
Probab=29.27 E-value=1e+02 Score=22.52 Aligned_cols=20 Identities=5% Similarity=0.105 Sum_probs=9.4
Q ss_pred cccCc-hhHHHHHHHHHHHHH
Q 018979 322 ISSNR-WLMLKIFFVLVVFLM 341 (348)
Q Consensus 322 ~~~~r-~~~~~if~vl~~f~l 341 (348)
.++++ |.-..++++++++++
T Consensus 37 ~~~~~~~~~~~~~ii~l~~~~ 57 (71)
T PHA02819 37 NKKTKKSFLRYYLIIGLVTIV 57 (71)
T ss_pred cccccCChhHHHHHHHHHHHH
Confidence 33444 555555555444433
No 136
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.27 E-value=2.3e+02 Score=25.81 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=43.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 58 AIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVF-DDPTFEIQELTAVIKQDITALNSAVVDLQ 123 (348)
Q Consensus 58 ~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf-~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq 123 (348)
.-.++|...-++|+..|..++..|..-.+.-..-++- -|....-...+.....+++++|+.|.++.
T Consensus 253 gfqpewi~~~kdi~dai~qlkeai~~~rk~~g~wpl~rp~d~~~w~~~~~~~qddikklnk~iddfn 319 (342)
T KOG0568|consen 253 GFQPEWILKGKDIRDAIAQLKEAILQERKKLGEWPLQRPDDKAAWKHFCENFQDDIKKLNKLIDDFN 319 (342)
T ss_pred CCChHHHhccchHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4578999999999999999998885432222222331 12223445566777778888888887754
No 137
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.95 E-value=2.7e+02 Score=21.50 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Q 018979 269 VESTIHELGNIFTQLATMVS-QQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISS 324 (348)
Q Consensus 269 ie~~i~el~~lf~~l~~~V~-~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~ 324 (348)
.+..-.+|..-|..|-..+. ...+++++|+..-......+..-...+.......++
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777887777776 456788999988887777777777777666655443
No 138
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=28.93 E-value=3.7e+02 Score=23.00 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 257 ~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
..+.+-.+.+..|...+.++.....+++.-+.+|.+.+..|...+.....-++...
T Consensus 128 ~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 183 (213)
T PF00015_consen 128 ESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQIS 183 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567788888888888888888888888888888877776655444444433
No 139
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=28.87 E-value=3.7e+02 Score=24.00 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 64 NKRASKIGYGIHQTSQKLAKLAKLAKRTSV--FDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNS 128 (348)
Q Consensus 64 ~~~a~~I~~~I~~~~~~L~~L~~L~k~~~l--f~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~ 128 (348)
...+......++.+...|+.=.+-.++... +++-...+.++...|+..+..+..+|+.++...+.
T Consensus 41 ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~ 107 (215)
T PF07083_consen 41 IKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKE 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777665444444311 23334678888899999999999999888865543
No 140
>PHA01815 hypothetical protein
Probab=28.87 E-value=80 Score=20.87 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 018979 333 FFVLVVFLMIFLFF 346 (348)
Q Consensus 333 f~vl~~f~l~f~~~ 346 (348)
|..+++|-++|+++
T Consensus 35 ftt~iifyiifl~v 48 (55)
T PHA01815 35 FTTLIIFYIIFLMV 48 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445666666554
No 141
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=28.66 E-value=2.6e+02 Score=21.17 Aligned_cols=85 Identities=22% Similarity=0.207 Sum_probs=48.3
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 018979 86 KLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVL 165 (348)
Q Consensus 86 ~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~ 165 (348)
.|.+.....+.. .+-.+|...|...+..|+..++.+....+.-. .- ......-...+.....++.+|+.++
T Consensus 14 ~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~------~~--~~~~~~~~~~k~~~~KL~~df~~~l 84 (102)
T PF14523_consen 14 QLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLN------SL--SSDRSNDRQQKLQREKLSRDFKEAL 84 (102)
T ss_dssp HHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HS--H----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh--hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333334433 34455777777777777777777665543321 00 0112233456677889999999999
Q ss_pred HHHHHHHHHHHhhh
Q 018979 166 TMRTENLKVHENRR 179 (348)
Q Consensus 166 ~~r~~~~k~~~~R~ 179 (348)
..|....+...++.
T Consensus 85 ~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 85 QEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99987766655554
No 142
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=28.64 E-value=78 Score=22.01 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=10.7
Q ss_pred CchhHH---HHHHHHHHHHHHHHH
Q 018979 325 NRWLML---KIFFVLVVFLMIFLF 345 (348)
Q Consensus 325 ~r~~~~---~if~vl~~f~l~f~~ 345 (348)
.+|++- ++-+++++|+++|.+
T Consensus 15 ~~WlvtyaDlmTLLl~fFVlL~s~ 38 (58)
T PF13677_consen 15 PRWLVTYADLMTLLLAFFVLLFSM 38 (58)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467543 234445555555543
No 143
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=28.25 E-value=95 Score=20.13 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 018979 336 LVVFLMIFLF 345 (348)
Q Consensus 336 l~~f~l~f~~ 345 (348)
+++|+++|.+
T Consensus 20 LL~FlL~fFL 29 (44)
T PF08135_consen 20 LLVFLLFFFL 29 (44)
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 144
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.11 E-value=5.4e+02 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 99 FEIQELTAVIKQDITALNSAVVDLQLLC 126 (348)
Q Consensus 99 ~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~ 126 (348)
+|+..+.......+....++++.|....
T Consensus 28 eel~~lQ~~C~ssI~~QkkrLk~L~~sL 55 (330)
T PF07851_consen 28 EELSKLQDKCSSSISHQKKRLKELKKSL 55 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445455555555555554433
No 145
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=27.71 E-value=43 Score=25.11 Aligned_cols=19 Identities=0% Similarity=-0.121 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcccCchhHH
Q 018979 312 QSQLVRYLNSISSNRWLML 330 (348)
Q Consensus 312 ~~~L~ka~~~~~~~r~~~~ 330 (348)
..+...|.++.++.|+|.+
T Consensus 50 ~Gd~~~A~~aS~~Ak~~~~ 68 (82)
T PF04505_consen 50 AGDYEGARRASRKAKKWSI 68 (82)
T ss_pred CCCHHHHHHHHHHhHHHHH
Confidence 3455566666666665554
No 146
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.60 E-value=6.5e+02 Score=25.58 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 258 YMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVE 309 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~ 309 (348)
.++.-.+.+..|...+.++...+.+++.-+.+|...++.|..++++....++
T Consensus 432 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 432 LVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788888899999999999999999999999988888776665554
No 147
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=26.90 E-value=6.8e+02 Score=27.08 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHH
Q 018979 297 IDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKI 332 (348)
Q Consensus 297 Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~i 332 (348)
|+.-+.........+......+.....-.-++++.+
T Consensus 304 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (914)
T PRK11466 304 VSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMV 339 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444433
No 148
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=26.87 E-value=6.1e+02 Score=27.65 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018979 100 EIQELTAVIKQDITALNSAVVDL 122 (348)
Q Consensus 100 eI~~Lt~~Ik~~i~~~~~~I~~L 122 (348)
+.+.....+......+++.+..|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~l 96 (968)
T TIGR02956 74 QRQAIGKKLTLQSETLLHSLKAL 96 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333344333333
No 149
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=26.59 E-value=1e+02 Score=18.68 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 018979 337 VVFLMIFLFF 346 (348)
Q Consensus 337 ~~f~l~f~~~ 346 (348)
.+-+++|.+|
T Consensus 13 tlgiiFFAIf 22 (31)
T PRK11875 13 ALVTLFFAIA 22 (31)
T ss_pred HHHHHHHhhh
Confidence 3334444443
No 150
>PHA02955 hypothetical protein; Provisional
Probab=26.17 E-value=68 Score=28.68 Aligned_cols=20 Identities=20% Similarity=0.690 Sum_probs=11.4
Q ss_pred cCchhHHHHHHHHHHHHHHH
Q 018979 324 SNRWLMLKIFFVLVVFLMIF 343 (348)
Q Consensus 324 ~~r~~~~~if~vl~~f~l~f 343 (348)
+.+|+++.+.+++++|++++
T Consensus 178 ~~~w~ii~~v~ii~~~v~l~ 197 (213)
T PHA02955 178 SIKWFIIYIVLCLLILIILG 197 (213)
T ss_pred CCcchhHHHHHHHHHHHHHH
Confidence 45788765555544444433
No 151
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.14 E-value=1.3e+02 Score=25.97 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCc-hhHH
Q 018979 301 MDDTLANVEGAQSQLVRYLNSISSNR-WLML 330 (348)
Q Consensus 301 v~~~~~~v~~g~~~L~ka~~~~~~~r-~~~~ 330 (348)
+..-.-.++++.++|++-.+...... |+.+
T Consensus 77 ~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~ 107 (193)
T PF06738_consen 77 IVAGQLSLEEAIERLDEIDREPPRYPPWLVI 107 (193)
T ss_pred HhcCCCCHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 33344567778888877777664444 5444
No 152
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=25.95 E-value=61 Score=25.41 Aligned_cols=30 Identities=17% Similarity=0.583 Sum_probs=15.5
Q ss_pred HHHHHHHcccCchh-HHHHHHHHHHHHHHHH
Q 018979 315 LVRYLNSISSNRWL-MLKIFFVLVVFLMIFL 344 (348)
Q Consensus 315 L~ka~~~~~~~r~~-~~~if~vl~~f~l~f~ 344 (348)
..+-+++.++.... |+++++|+-|.+|+||
T Consensus 4 ~~k~~~~~kgFTLvEMLiVLlIISiLlLl~i 34 (107)
T COG4537 4 MKKFLKHKKGFTLVEMLIVLLIISILLLLFI 34 (107)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHc
Confidence 34555666666633 5545554444444443
No 153
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=25.87 E-value=1.1e+02 Score=28.12 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHccc-CchhHHHHHHHHHH
Q 018979 296 RIDENMDDTLANVEGAQSQLVRYLNSISS-NRWLMLKIFFVLVV 338 (348)
Q Consensus 296 ~Id~nv~~~~~~v~~g~~~L~ka~~~~~~-~r~~~~~if~vl~~ 338 (348)
+|--.++.=...++.|+++|.+-.+.... +||+.++..++.+.
T Consensus 94 ~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~ 137 (250)
T COG2966 94 RISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAA 137 (250)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHH
Confidence 33344455556678888888877755444 56776655555443
No 154
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.84 E-value=2.3e+02 Score=19.65 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 259 MHSRAEALHNVESTIHELGNIFTQ 282 (348)
Q Consensus 259 l~~R~~~i~~ie~~i~el~~lf~~ 282 (348)
.++-.++++.|+.++.+|-.||.-
T Consensus 23 n~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666655543
No 155
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=25.70 E-value=59 Score=35.55 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLA 85 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~ 85 (348)
+..+.+.+..|..-|.=+.-++-+|.
T Consensus 644 k~~~~d~~~yip~tlnPVfgkmfel~ 669 (1105)
T KOG1326|consen 644 KKRTLDRAHYIPNTLNPVFGKMFELE 669 (1105)
T ss_pred cchhhhhhhcCcCCCCcHHHHHHHhh
Confidence 34455555555555555555554443
No 156
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=25.70 E-value=57 Score=23.88 Aligned_cols=14 Identities=43% Similarity=0.949 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 018979 332 IFFVLVVFLMIFLF 345 (348)
Q Consensus 332 if~vl~~f~l~f~~ 345 (348)
+|++|++++|++++
T Consensus 14 ~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 14 IFAVLFVWLLFYVL 27 (71)
T ss_pred cHHHHHHHHHHHHH
Confidence 45555555655553
No 157
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=25.11 E-value=1.4e+02 Score=27.29 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcccCc--hhHHHHHHHHHHHHHH
Q 018979 308 VEGAQSQLVRYLNSISSNR--WLMLKIFFVLVVFLMI 342 (348)
Q Consensus 308 v~~g~~~L~ka~~~~~~~r--~~~~~if~vl~~f~l~ 342 (348)
.+.++=+..++.+-.+++| |+++++|.++.+.+.+
T Consensus 23 ~~a~~~~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~ 59 (239)
T COG3736 23 KEARNWEEDRVIKLERSRRLAWRVAILFTLLAVAAVI 59 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444554444444 6666565554443333
No 158
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=1.7e+02 Score=22.86 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=31.5
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 260 HSRAEALH----NVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316 (348)
Q Consensus 260 ~~R~~~i~----~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ 316 (348)
-.|..+++ ++..++.+|+.=|+.|+-|+.+ ||.||+ +.+.++.|...|.
T Consensus 64 aakY~DMk~iAEkla~k~deLn~KfenL~P~lqQ----IDaidd----st~kLEaAa~~Ld 116 (120)
T KOG4559|consen 64 AAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQ----IDAIDD----STDKLEAAAAKLD 116 (120)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH----HHHHhh----HHHHHHHHHHHHH
Confidence 34444554 4556678999999999998864 555554 4455565555553
No 159
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=24.75 E-value=1.3e+02 Score=18.84 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 018979 334 FVLVVFLMIFLF 345 (348)
Q Consensus 334 ~vl~~f~l~f~~ 345 (348)
.++++|+-+|+.
T Consensus 10 ~vV~ffv~LFif 21 (36)
T PF02532_consen 10 TVVIFFVSLFIF 21 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc
Confidence 345555555554
No 160
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=24.60 E-value=3.3e+02 Score=28.23 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQ 289 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~ 289 (348)
.+++.++.+|..|.+=-.-|+.+|.|
T Consensus 435 ~d~~~~~~~i~~l~~~~~sl~~~v~q 460 (561)
T PF00429_consen 435 EDLQALEDSISALQEQLTSLAEVVLQ 460 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444444443
No 161
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=24.60 E-value=91 Score=21.94 Aligned_cols=8 Identities=25% Similarity=0.824 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 018979 337 VVFLMIFL 344 (348)
Q Consensus 337 ~~f~l~f~ 344 (348)
|.|+++|.
T Consensus 16 ISfiIlfg 23 (59)
T PF11119_consen 16 ISFIILFG 23 (59)
T ss_pred HHHHHHHH
Confidence 44444444
No 162
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=24.32 E-value=93 Score=25.35 Aligned_cols=22 Identities=18% Similarity=0.606 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 018979 325 NRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 325 ~r~~~~~if~vl~~f~l~f~~~ 346 (348)
.|...+++|=++++++|+|+.|
T Consensus 28 ~kY~~Iv~FEi~va~~L~~~FF 49 (128)
T PHA02689 28 ESYLAIAVLELLLALALALVFF 49 (128)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4444455676777777777654
No 163
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=24.13 E-value=1.2e+02 Score=18.70 Aligned_cols=9 Identities=22% Similarity=0.796 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 018979 333 FFVLVVFLM 341 (348)
Q Consensus 333 f~vl~~f~l 341 (348)
.+||.+|+|
T Consensus 12 v~iLt~~IL 20 (34)
T PF08113_consen 12 VMILTAFIL 20 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334433
No 164
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.80 E-value=7.8e+02 Score=25.03 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCCcCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 6 GPSSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLA 85 (348)
Q Consensus 6 ~~~~~~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~ 85 (348)
....+......|....+.+...+ .....+..+...|+.+...|+.+...|..+.
T Consensus 113 ~~~gl~~~l~~ff~a~~~la~~P--------------------------~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~ 166 (507)
T PRK07739 113 SDTGLNKVLDQFWNSLQELSKNP--------------------------ENLGARSVVRQRAQALAETFNYLSQSLTDIQ 166 (507)
T ss_pred CcchHHHHHHHHHHHHHHHHhCc--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677777776665311 1123366789999999999999999998876
Q ss_pred HHHh
Q 018979 86 KLAK 89 (348)
Q Consensus 86 ~L~k 89 (348)
.-..
T Consensus 167 ~~~~ 170 (507)
T PRK07739 167 NDLK 170 (507)
T ss_pred HHHH
Confidence 5443
No 165
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.58 E-value=82 Score=23.93 Aligned_cols=8 Identities=38% Similarity=0.268 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 018979 333 FFVLVVFL 340 (348)
Q Consensus 333 f~vl~~f~ 340 (348)
++..+||+
T Consensus 17 ~GM~~VF~ 24 (85)
T PRK03814 17 TGMGVVFI 24 (85)
T ss_pred HHHHHHHH
Confidence 33333333
No 166
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=23.35 E-value=2.4e+02 Score=18.97 Aligned_cols=54 Identities=7% Similarity=0.175 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVE 309 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~ 309 (348)
+..+..-+..+..+..-..+|+.+..+=..++..=...++.++.++..+..++.
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~ 64 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLK 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344455555555555555566665555555565555566666666666665554
No 167
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.26 E-value=95 Score=18.42 Aligned_cols=8 Identities=38% Similarity=0.388 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 018979 333 FFVLVVFL 340 (348)
Q Consensus 333 f~vl~~f~ 340 (348)
.+++++++
T Consensus 7 ~g~llv~l 14 (29)
T PRK14750 7 CGALLVLL 14 (29)
T ss_pred HHHHHHHH
Confidence 33333333
No 168
>PRK04406 hypothetical protein; Provisional
Probab=23.19 E-value=3.1e+02 Score=20.17 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018979 270 ESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYL 319 (348)
Q Consensus 270 e~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~ 319 (348)
|+++.++.+=+.+|-..+.-|+.+|+.++.-|..-...+..=..+|..-.
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666667777777777777777666666655555554443
No 169
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=23.11 E-value=76 Score=19.87 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018979 330 LKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 330 ~~if~vl~~f~l~f~~~ 346 (348)
.+++.++++++.++-+|
T Consensus 13 T~v~v~lM~i~tvg~v~ 29 (35)
T PF13253_consen 13 TMVVVWLMLILTVGSVV 29 (35)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 170
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.95 E-value=7.7e+02 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRI 297 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~I 297 (348)
+-+..+...+..+.+.|..+...+.+|+..--+.
T Consensus 299 dL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~ 332 (424)
T PF03915_consen 299 DLLSDLKEDLKKASETFALVEQCTEEQEKSPSRS 332 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 3455566666666677777777777776554433
No 171
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=22.94 E-value=2.6e+02 Score=19.09 Aligned_cols=55 Identities=11% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018979 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313 (348)
Q Consensus 259 l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~ 313 (348)
|..-+..|..+.....+|+.+-.+=+.+|..=..-+++...++..+...+.++.+
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555556666666666666666666666665543
No 172
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=22.87 E-value=4.1e+02 Score=25.12 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSIS 323 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~ 323 (348)
+.+..|++.+ ..||..+..-|.+-.+-|+.|..-+..+...|++=.. -+||++--+
T Consensus 25 ~aL~~L~~v~---~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g-s~kAi~vfs 80 (297)
T PF11945_consen 25 DALEYLDKVS---NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG-SKKAITVFS 80 (297)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEeC
Confidence 3455555544 4568888899999999999999888888888875433 345554333
No 173
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.82 E-value=7.1e+02 Score=24.21 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=16.3
Q ss_pred hhhhhchhHHHHHHHHHHHHH
Q 018979 54 KFAVAIQSEFNKRASKIGYGI 74 (348)
Q Consensus 54 ~~~~~~~~~F~~~a~~I~~~I 74 (348)
..+...+.+|-..++.|.-.|
T Consensus 187 ~es~vd~~eWklEvERV~PqL 207 (359)
T PF10498_consen 187 IESKVDPAEWKLEVERVLPQL 207 (359)
T ss_pred ccccCCHHHHHHHHHHHhhhh
Confidence 345566888999999888877
No 174
>CHL00031 psbT photosystem II protein T
Probab=22.75 E-value=1.1e+02 Score=18.87 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 018979 334 FVLVVFLMIFLFF 346 (348)
Q Consensus 334 ~vl~~f~l~f~~~ 346 (348)
+++.+-+++|.+|
T Consensus 10 l~~tlgilFFAI~ 22 (33)
T CHL00031 10 LVSTLGIIFFAIF 22 (33)
T ss_pred HHHHHHHHHHhhe
Confidence 3333344444443
No 175
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=22.53 E-value=4.2e+02 Score=25.73 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 279 IFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 279 lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
+|-.+......-||.-.++|.-.....+..+.
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~~ 356 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQER 356 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 56667777777888888888877777666543
No 176
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=22.31 E-value=5.1 Score=30.12 Aligned_cols=7 Identities=57% Similarity=1.251 Sum_probs=0.0
Q ss_pred cCchhHH
Q 018979 324 SNRWLML 330 (348)
Q Consensus 324 ~~r~~~~ 330 (348)
+.||+.|
T Consensus 64 KrrwlwL 70 (81)
T PF14812_consen 64 KRRWLWL 70 (81)
T ss_dssp -------
T ss_pred cchhHHH
Confidence 3456544
No 177
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.03 E-value=81 Score=28.16 Aligned_cols=7 Identities=43% Similarity=0.339 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 018979 329 MLKIFFV 335 (348)
Q Consensus 329 ~~~if~v 335 (348)
|++|++|
T Consensus 133 ClIIIAV 139 (227)
T PF05399_consen 133 CLIIIAV 139 (227)
T ss_pred HHHHHHH
Confidence 4444443
No 178
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=22.02 E-value=2.8e+02 Score=27.62 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 70 IGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNS 128 (348)
Q Consensus 70 I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~ 128 (348)
..+-|.++..+|++|..+..... -|-..||..|...+.+....+...+..-+...-.
T Consensus 78 fe~pi~ele~ki~el~~~~~~~~--~~~~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~a 134 (431)
T PLN03230 78 FEKPIVDLENRIDEVRELANKTG--VDFSAQIAELEERYDQVRRELYSRLTPVQRLSVA 134 (431)
T ss_pred hhhHHHHHHHHHHHHHhhhhccc--ccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45567788888888887766432 2334788888888888878888777666654433
No 179
>PHA03332 membrane glycoprotein; Provisional
Probab=21.88 E-value=1.2e+03 Score=26.44 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMV 287 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V 287 (348)
..+++.-...+....++|.+...-..+++.-|
T Consensus 1200 sa~~e~i~~~ld~~~~~i~d~~a~~t~~sa~v 1231 (1328)
T PHA03332 1200 SAHMENITGDLDAMKKTIEDYRAEMTQFSAQV 1231 (1328)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhHHHH
Confidence 34566666677777777777776666666666
No 180
>PHA02967 hypothetical protein; Provisional
Probab=21.65 E-value=1.1e+02 Score=24.97 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 018979 325 NRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 325 ~r~~~~~if~vl~~f~l~f~~~ 346 (348)
.+...+++|=++++++|+|+.|
T Consensus 25 ~kY~~Iv~FEi~val~L~~~FF 46 (128)
T PHA02967 25 NKYFYILVFEVIVALIIINFFF 46 (128)
T ss_pred ccchhHHHHHHHHHHHHHHHHH
Confidence 4444455666666777776654
No 181
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=21.62 E-value=1.9e+02 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 293 IAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 293 ~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
-+++|.++|..|..|++.|..-|...
T Consensus 9 NVEkLQ~mi~nTieN~~eAee~l~~~ 34 (70)
T TIGR03090 9 NVEKLQQMIDNTIENMEEANEYIEAH 34 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777777766644
No 182
>PF00895 ATP-synt_8: ATP synthase protein 8; InterPro: IPR001421 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from Metazoa. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit may have an analogous function in Metazoa. Subunit 8 differs in sequence between Metazoa, plants (IPR003319 from INTERPRO) and fungi (IPR009230 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.52 E-value=1.2e+02 Score=20.05 Aligned_cols=6 Identities=33% Similarity=1.182 Sum_probs=2.5
Q ss_pred hhHHHH
Q 018979 327 WLMLKI 332 (348)
Q Consensus 327 ~~~~~i 332 (348)
|+.+++
T Consensus 9 W~~~f~ 14 (54)
T PF00895_consen 9 WFFLFL 14 (54)
T ss_pred HHHHHH
Confidence 444433
No 183
>PHA02650 hypothetical protein; Provisional
Probab=21.51 E-value=1.2e+02 Score=22.54 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=7.4
Q ss_pred chhHHHHHHHHHHHH
Q 018979 326 RWLMLKIFFVLVVFL 340 (348)
Q Consensus 326 r~~~~~if~vl~~f~ 340 (348)
.|+-..+++++++++
T Consensus 45 ~~~~~~~~ii~i~~v 59 (81)
T PHA02650 45 SWFNGQNFIFLIFSL 59 (81)
T ss_pred CCchHHHHHHHHHHH
Confidence 355555555543333
No 184
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=21.47 E-value=2.2e+02 Score=20.72 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTS 92 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~ 92 (348)
.++|...+.-|...|..+..++-.|.+..|+..
T Consensus 22 d~e~~atls~i~eli~~IN~kIl~lNKKsKKn~ 54 (71)
T PF06015_consen 22 DSEFAATLSAIKELISQINLKILALNKKSKKNT 54 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Confidence 578999999999999999999999988888753
No 185
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=21.36 E-value=79 Score=18.61 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=7.7
Q ss_pred HcccCchhHHHHH
Q 018979 321 SISSNRWLMLKIF 333 (348)
Q Consensus 321 ~~~~~r~~~~~if 333 (348)
|+++++|+...+.
T Consensus 7 yKsGK~Wv~a~~~ 19 (29)
T TIGR03715 7 YKSGKQWVFAAIT 19 (29)
T ss_pred EecccHHHHHHHH
Confidence 4566778755433
No 186
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.36 E-value=3.3e+02 Score=19.81 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018979 303 DTLANVEGAQSQLVR 317 (348)
Q Consensus 303 ~~~~~v~~g~~~L~k 317 (348)
...+.|+..+.|+-+
T Consensus 23 ~iEeKVEf~~~E~~Q 37 (70)
T TIGR01149 23 EIEEKVEFVNGEVAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555543
No 187
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.31 E-value=5.3e+02 Score=22.10 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=6.1
Q ss_pred chhHHHHHHHH
Q 018979 326 RWLMLKIFFVL 336 (348)
Q Consensus 326 r~~~~~if~vl 336 (348)
||++..+|+++
T Consensus 156 r~~~g~i~~~~ 166 (177)
T PF07798_consen 156 RWLVGVIFGCV 166 (177)
T ss_pred HHHHHHHHHHH
Confidence 56665555543
No 188
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=21.31 E-value=3.9e+02 Score=25.59 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 70 IGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLL 125 (348)
Q Consensus 70 I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~ 125 (348)
..+-|.++..++++|..+..... -|-..||..|...+....+.+...+...+..
T Consensus 11 fe~~i~el~~~i~~l~~~~~~~~--~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~v 64 (322)
T CHL00198 11 FMKPLAELESQVEELSKLAPKND--KVINNKLKSFQRKLRILKKEIFYSLTPLQRL 64 (322)
T ss_pred hhhhHHHHHHHHHHHHhhhcccc--cCHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45567788888888887765432 2334788888888877777777776555543
No 189
>PHA03046 Hypothetical protein; Provisional
Probab=21.13 E-value=4.8e+02 Score=21.53 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANV 308 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v 308 (348)
++++..-.-++..+--.+.-|..+|+.....-..=+..|+|++.+++..-.++
T Consensus 76 DsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 76 DSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556678888888889999999988888899999999999988765444
No 190
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.09 E-value=4.9e+02 Score=25.42 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhh
Q 018979 62 EFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTS 141 (348)
Q Consensus 62 ~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~ 141 (348)
+.+...+.+...|=.+-..|..|..||....-|...-.+++.....|...++..+..|..++.....+ ..
T Consensus 302 ~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N----------~~ 371 (388)
T PF04912_consen 302 EILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKEN----------ME 371 (388)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q ss_pred hHHHHHHHHHHHHHHH
Q 018979 142 HSTTVVDNLKNRLMGT 157 (348)
Q Consensus 142 h~~nvv~~L~~~L~~l 157 (348)
.-.+-+..|..|+..+
T Consensus 372 ~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 372 TIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHhcc
No 191
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=20.74 E-value=1e+02 Score=30.16 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=13.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHH
Q 018979 322 ISSNRWLMLKIFFVLVVFLMIFLF 345 (348)
Q Consensus 322 ~~~~r~~~~~if~vl~~f~l~f~~ 345 (348)
-.+.+|++++++++.+++.++|.+
T Consensus 36 L~r~k~~Il~~~~~~~~~g~~ya~ 59 (377)
T PRK10381 36 LWKAKKTIIAITFAFACAGLLISF 59 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567776555555555555554
No 192
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.49 E-value=1.1e+02 Score=25.69 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 018979 336 LVVFLMIFLF 345 (348)
Q Consensus 336 l~~f~l~f~~ 345 (348)
|++++.||++
T Consensus 130 l~i~~giy~~ 139 (145)
T PF10661_consen 130 LAICGGIYVV 139 (145)
T ss_pred HHHHHHHHHH
Confidence 3444445544
No 193
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=20.48 E-value=8.6e+02 Score=24.24 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=5.0
Q ss_pred cCchhHHHHH
Q 018979 324 SNRWLMLKIF 333 (348)
Q Consensus 324 ~~r~~~~~if 333 (348)
..||+....+
T Consensus 206 ~~Rw~~~l~l 215 (418)
T cd07912 206 SYRWLAYLGL 215 (418)
T ss_pred HHHHHHHHHH
Confidence 4477554333
No 194
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.39 E-value=5.7e+02 Score=22.13 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018979 99 FEIQELTAVIKQDITALNSAVVDLQLLCN 127 (348)
Q Consensus 99 ~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~ 127 (348)
.+++.-..+.+..|..+++.|+.|+....
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~ 144 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQS 144 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777778888777776543
Done!