Query 018979
Match_columns 348
No_of_seqs 222 out of 1234
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 100.0 1.1E-32 3.8E-37 256.3 5.9 232 55-326 38-279 (279)
2 1dn1_B Syntaxin 1A, syntaxin b 100.0 3.6E-30 1.2E-34 237.5 9.0 238 55-330 25-266 (267)
3 3hd7_B Syntaxin-1A; membrane p 99.9 1.7E-23 5.8E-28 166.6 13.6 81 254-334 11-91 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 1E-21 3.5E-26 146.7 10.8 75 256-330 2-76 (77)
5 3c98_B Syntaxin-1A; protein co 99.8 7.8E-21 2.7E-25 175.2 11.8 264 8-330 11-278 (279)
6 2nps_B Syntaxin 13, vesicle-as 99.8 1.2E-20 4.2E-25 138.6 10.0 70 260-329 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.8 6.8E-20 2.3E-24 138.7 11.0 73 254-326 11-83 (83)
8 3b5n_B Protein SSO1; snare com 99.8 1.7E-19 5.9E-24 131.6 11.1 68 256-323 2-69 (69)
9 1fio_A SSO1 protein; four heli 99.8 5E-19 1.7E-23 155.8 14.1 187 59-291 3-196 (196)
10 1n7s_B Syntaxin 1A; neuronal s 99.8 1.1E-18 3.9E-23 126.9 9.6 64 256-319 4-67 (68)
11 1gl2_B Syntaxin 7; membrane pr 99.8 1E-18 3.5E-23 125.9 8.5 64 257-320 2-65 (65)
12 1s94_A S-syntaxin; three helix 99.2 4.7E-11 1.6E-15 103.4 9.9 130 56-186 34-167 (180)
13 1ez3_A Syntaxin-1A; three heli 99.0 4.7E-09 1.6E-13 85.4 13.4 116 58-174 5-124 (127)
14 2nps_D Syntaxin-6; vesicle fus 97.9 3.4E-05 1.2E-09 57.5 8.1 64 263-326 18-81 (82)
15 3hd7_B Syntaxin-1A; membrane p 97.9 0.00025 8.5E-09 55.7 12.2 90 248-341 12-101 (109)
16 2dnx_A Syntaxin-12; snare, HAB 97.7 0.0011 3.9E-08 53.6 13.5 107 59-171 8-117 (130)
17 1gl2_D Syntaxin 8, vesicle tra 97.5 0.00043 1.5E-08 49.0 7.7 56 263-318 8-63 (65)
18 1sfc_D Protein (SNAP-25B), pro 97.5 0.0011 3.7E-08 49.8 10.2 60 260-319 25-84 (87)
19 1n7s_D SNAP-25A; neuronal snar 97.5 0.001 3.5E-08 47.2 9.5 56 263-318 9-64 (66)
20 1l4a_D S-SNAP25 fusion protein 97.1 0.002 6.8E-08 48.3 8.2 56 263-318 29-84 (87)
21 3hd7_A Vesicle-associated memb 97.0 0.012 4.2E-07 44.3 11.3 43 264-306 5-47 (91)
22 3b5n_D Protein transport prote 96.9 0.0085 2.9E-07 42.1 9.4 54 264-317 10-63 (64)
23 1mqs_B SED5P, integral membran 96.9 0.00019 6.4E-09 47.5 0.7 23 8-30 6-28 (50)
24 1nhl_A Synaptosomal-associated 96.5 0.023 7.7E-07 38.5 8.5 47 270-316 6-52 (54)
25 1n7s_C SNAP-25A; neuronal snar 96.2 0.1 3.4E-06 38.2 11.2 58 259-316 18-75 (79)
26 3b5n_C Protein transport prote 94.8 0.51 1.8E-05 33.5 10.6 45 275-319 23-67 (70)
27 1l4a_C S-SNAP25 fusion protein 94.0 0.2 7E-06 36.8 7.3 52 264-315 27-78 (83)
28 1gl2_C VTI1B, vesicle transpor 92.6 0.86 3E-05 31.8 8.3 53 264-316 9-61 (65)
29 2kog_A Vesicle-associated memb 91.7 0.0076 2.6E-07 47.9 -3.7 39 265-303 34-72 (119)
30 2nps_C Vesicle transport throu 89.4 4.7 0.00016 29.2 10.9 68 258-325 13-80 (81)
31 1jth_B Syntaxin 1A; coiled-coi 89.2 4.1 0.00014 29.1 9.6 70 255-328 8-77 (77)
32 4dnd_A Syntaxin-10, SYN10; str 86.9 2.9 0.0001 33.3 8.2 99 59-159 25-126 (130)
33 3hd7_A Vesicle-associated memb 81.4 14 0.00048 27.3 11.8 19 258-276 27-45 (91)
34 2dnx_A Syntaxin-12; snare, HAB 79.2 21 0.00073 28.1 11.2 78 100-181 11-120 (130)
35 2c5k_T Syntaxin TLG1, T-snare 77.9 19 0.00066 26.8 11.4 87 61-162 6-92 (95)
36 1hs7_A Syntaxin VAM3; UP-and-D 77.9 20 0.00067 26.9 11.6 87 61-174 6-93 (97)
37 1jdm_A Sarcolipin; helix, memb 72.2 4 0.00014 23.3 3.0 23 324-346 4-26 (31)
38 1deq_A Fibrinogen (alpha chain 71.0 40 0.0014 31.5 11.2 65 63-127 58-130 (390)
39 1sfc_A VAMP 2, protein (synapt 64.2 42 0.0014 24.9 8.4 43 264-306 30-72 (96)
40 2k48_A Nucleoprotein; viral pr 48.9 73 0.0025 24.0 7.1 64 99-162 35-99 (107)
41 3ghg_A Fibrinogen alpha chain; 48.0 1.4E+02 0.0049 29.1 10.8 67 60-126 52-126 (562)
42 3efg_A Protein SLYX homolog; x 47.2 74 0.0025 22.6 6.9 49 264-312 14-62 (78)
43 2nps_B Syntaxin 13, vesicle-as 46.7 69 0.0024 22.1 8.8 59 257-315 6-64 (71)
44 1fjk_A Cardiac phospholamban; 43.7 24 0.00082 22.3 3.2 18 329-346 32-49 (52)
45 2nps_A VAMP-4, vesicle-associa 41.2 71 0.0024 22.3 5.9 39 266-304 10-48 (74)
46 2pjx_C Syntaxin-4; membrane tr 41.0 7.4 0.00025 21.5 0.4 9 10-18 1-9 (29)
47 4gwp_A Mediator of RNA polymer 39.2 1E+02 0.0035 23.6 6.8 64 257-320 4-71 (115)
48 3b5n_B Protein SSO1; snare com 39.1 91 0.0031 21.3 10.2 58 256-313 9-66 (69)
49 2l5g_B Putative uncharacterize 35.6 80 0.0027 19.7 4.6 27 60-86 4-30 (42)
50 2ic6_A Nucleocapsid protein; h 35.3 1.2E+02 0.0041 21.6 6.9 64 100-163 6-70 (78)
51 1sfc_B Protein (syntaxin 1A), 35.2 1.2E+02 0.0041 21.5 10.3 63 252-314 16-78 (83)
52 1gl2_B Syntaxin 7; membrane pr 34.7 1E+02 0.0036 20.7 8.7 56 257-312 9-64 (65)
53 1m1j_B Fibrinogen beta chain; 32.2 3.5E+02 0.012 26.0 13.8 28 62-89 90-117 (464)
54 1s94_A S-syntaxin; three helix 31.9 1.5E+02 0.0052 24.1 7.6 114 67-181 38-155 (180)
55 2ic9_A Nucleocapsid protein; h 31.4 1.6E+02 0.0054 21.8 6.6 65 100-164 6-71 (96)
56 3zx6_A HAMP, methyl-accepting 31.3 3E+02 0.01 24.9 10.5 52 258-309 221-272 (341)
57 3mk7_C Cytochrome C oxidase, C 31.2 26 0.0009 31.7 2.8 20 326-346 56-75 (311)
58 1l4a_A Synaptobrevin; snare, s 31.2 1.2E+02 0.0042 21.4 5.9 38 266-303 17-54 (80)
59 1ez3_A Syntaxin-1A; three heli 29.9 1.8E+02 0.0061 21.9 11.7 109 68-181 8-124 (127)
60 1n7s_B Syntaxin 1A; neuronal s 28.6 1.4E+02 0.0047 20.3 9.8 57 256-312 11-67 (68)
61 1urq_A M-tomosyn isoform; tran 28.2 1.4E+02 0.0048 20.2 7.5 38 266-303 6-43 (63)
62 1fio_A SSO1 protein; four heli 28.0 2.5E+02 0.0084 22.9 9.5 35 148-182 80-114 (196)
63 1qu7_A Methyl-accepting chemot 27.9 2.8E+02 0.0096 23.6 8.9 52 259-310 142-193 (227)
64 3ghg_A Fibrinogen alpha chain; 27.8 4.4E+02 0.015 25.7 12.7 30 278-307 131-160 (562)
65 4fi5_A Nucleoprotein; structur 27.2 2.1E+02 0.0071 21.8 6.8 61 100-160 23-84 (113)
66 3arc_T Photosystem II reaction 26.5 76 0.0026 18.6 3.2 10 337-346 13-22 (32)
67 1dn1_B Syntaxin 1A, syntaxin b 26.5 2.4E+02 0.0082 24.7 8.3 140 145-321 111-250 (267)
68 1m1j_A Fibrinogen alpha subuni 24.8 4.7E+02 0.016 25.1 13.5 31 60-90 53-83 (491)
69 3arc_I Photosystem II reaction 24.2 85 0.0029 19.0 3.2 12 334-345 10-21 (38)
70 1vcs_A Vesicle transport throu 21.9 2.4E+02 0.0084 20.8 9.1 29 100-128 35-63 (102)
71 3htk_A Structural maintenance 21.3 1.8E+02 0.0061 19.0 9.2 52 264-315 5-56 (60)
72 1n7s_A Vesicle-associated memb 20.5 2E+02 0.0067 19.1 10.0 43 264-306 4-46 (63)
73 3ajm_A Programmed cell death p 20.4 4E+02 0.014 22.6 8.4 27 145-171 151-177 (213)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.97 E-value=1.1e-32 Score=256.32 Aligned_cols=232 Identities=14% Similarity=0.206 Sum_probs=156.0
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 55 FAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRT---SVFDD---PTFEIQELTAVIKQDITALNSAVVDLQLLCNS 128 (348)
Q Consensus 55 ~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~---~lf~d---~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~ 128 (348)
.....+++|+..+++|..+|..+..++.+|.+||++. +.|++ ...+|+.++..|++.++.|+..|+.|+...+.
T Consensus 38 ~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~ 117 (279)
T 2xhe_B 38 QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKR 117 (279)
T ss_dssp --CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999875 34555 24789999999999999999999999987653
Q ss_pred cCCC---CCCCcc-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCccccc
Q 018979 129 QNES---GNISSD-TTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRL 204 (348)
Q Consensus 129 ~~~~---~~~~~~-~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~ 204 (348)
.... +..+.. ...|+.+++..|..+|++++..|+.++..|.+.+|.+..|...+..+.+.+
T Consensus 118 ~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~--------------- 182 (279)
T 2xhe_B 118 AQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSD--------------- 182 (279)
T ss_dssp THHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSS---------------
T ss_pred hhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---------------
Confidence 2100 011222 558999999999999999999999999999999987666542222111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 205 DGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLA 284 (348)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~ 284 (348)
+ ....+++. ++.. .+. +.+.+......+++++|+++|.+||++|.||++||.+|+
T Consensus 183 --------------e--e~~~~~e~--g~~~---~f~----q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla 237 (279)
T 2xhe_B 183 --------------D--AIQKVIEH--GTEG---IFS----GMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMS 237 (279)
T ss_dssp --------------T--THHHHHHH--C------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------H--HHHHHHhC--CchH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 0000 011 111122233456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 018979 285 TMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNR 326 (348)
Q Consensus 285 ~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r 326 (348)
+||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|
T Consensus 238 ~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 238 TLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp TTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 999999999999999999999999999999999999999876
No 2
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.96 E-value=3.6e-30 Score=237.49 Aligned_cols=238 Identities=19% Similarity=0.217 Sum_probs=167.6
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018979 55 FAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSV--FDDPT--FEIQELTAVIKQDITALNSAVVDLQLLCNSQN 130 (348)
Q Consensus 55 ~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~l--f~d~~--~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~ 130 (348)
.....++.|+..+++|..+|..+...+.+|.++|++... ..+.. .+++.++..|+..++.|...|+.|+.......
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~ 104 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 104 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445568999999999999999999999999999998533 22332 78999999999999999999999987654211
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCC
Q 018979 131 ESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGAST 210 (348)
Q Consensus 131 ~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 210 (348)
+ ...++...+.+.+++..|..+|.+++..|+.++..|.+.+|.+..|+..+.++.+++. .+.
T Consensus 105 ~-~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tde--------eie--------- 166 (267)
T 1dn1_B 105 G-LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSE--------ELE--------- 166 (267)
T ss_dssp H-TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH--------HHH---------
T ss_pred c-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHH--------HHH---------
Confidence 1 1123455688999999999999999999999999999999999888877765433210 000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 211 ASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQ 290 (348)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Q 290 (348)
.+...| ....|... .. +.. ........++++|+++|.+||++|.||++||.+|++||.+|
T Consensus 167 ---~~ie~g---~~~~f~q~---~l----~~~-------~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Q 226 (267)
T 1dn1_B 167 ---DMLESG---NPAIFASG---II----MDS-------SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 226 (267)
T ss_dssp ---HHHHTC---SSCTTTTT---CC----CCS-------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---HHHhCC---cHHHHHHH---HH----Hhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 01112110 00 000 01123467899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHH
Q 018979 291 GEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLML 330 (348)
Q Consensus 291 ge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~ 330 (348)
|++||+||+||+.|..||+.|+.+|.+|.+|++++|++.|
T Consensus 227 g~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 227 GEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp CSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999886654
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.90 E-value=1.7e-23 Score=166.57 Aligned_cols=81 Identities=27% Similarity=0.369 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHHHHH
Q 018979 254 LQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIF 333 (348)
Q Consensus 254 ~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~~if 333 (348)
...+++++|++++.+||++|.||++||.+|++||.+||++||+||+|++.|.+||+.|+.+|.+|.+|++++|+++|+++
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l 90 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999998774443333
Q ss_pred H
Q 018979 334 F 334 (348)
Q Consensus 334 ~ 334 (348)
+
T Consensus 91 ~ 91 (109)
T 3hd7_B 91 I 91 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.86 E-value=1e-21 Score=146.68 Aligned_cols=75 Identities=28% Similarity=0.386 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLML 330 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~~ 330 (348)
.+++++|+++|.+||++|.||++||.+|++||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|+++|
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999997765
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.84 E-value=7.8e-21 Score=175.16 Aligned_cols=264 Identities=19% Similarity=0.217 Sum_probs=169.1
Q ss_pred CCcCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 8 SSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKL 87 (348)
Q Consensus 8 ~~~~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L 87 (348)
.+|+|||.||+++........... .......+++|+..+++|...|..+...+.+|..+
T Consensus 11 g~mkDr~~el~~~~~~~~~~~~~~---------------------~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~ 69 (279)
T 3c98_B 11 GSMKDRTQELRTAKDSDDDDDVTV---------------------TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRK 69 (279)
T ss_dssp ---CCCCTTTC--------------------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhhcccccchhh---------------------hcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999998876654322110 01223457899999999999999999999999999
Q ss_pred HhhccC-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHH
Q 018979 88 AKRTSV-FD---DPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKE 163 (348)
Q Consensus 88 ~k~~~l-f~---d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~ 163 (348)
+.+... .+ +...+++.++..|+.....|+..+..|+......... ........+..++...|...++.+...|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i-~~~~~~i~~~~~qtn~La~n~a~~~a~~~~ 148 (279)
T 3c98_B 70 HSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL-NRSSADLRIRKTQHSTLSRKFVEVMSEYNA 148 (279)
T ss_dssp HHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987532 22 2236899999999999999999999888765543211 234567788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCchhhhhh
Q 018979 164 VLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQ 243 (348)
Q Consensus 164 ~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 243 (348)
.+..|...++....+........+..... ..... .+. +... ......
T Consensus 149 ~~~~~~~vva~evr~la~~~~~~~~~~~~------~~~~~-~~~-----~~~~------~~~~~~--------------- 195 (279)
T 3c98_B 149 TQSDYRERCKGRIQRQLEITGRTTTSEEL------EDMLE-SGN-----PAIF------ASGIIM--------------- 195 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCHHHH------HHHHH-SCC-----TTSS------TTTSCS---------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccchHH------HHHHH-hhh-----hHHH------HHHHHH---------------
Confidence 99999987877665555544332211000 00000 000 0000 000000
Q ss_pred hHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 018979 244 QGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSIS 323 (348)
Q Consensus 244 ~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~ 323 (348)
..+.......++++|++++.+|+.+|.+|+++|.+|+.+|.+|++++++|++||+.+.++|+.|+.+|.+|.+|++
T Consensus 196 ----~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~ 271 (279)
T 3c98_B 196 ----DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 271 (279)
T ss_dssp ----CSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011223456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHH
Q 018979 324 SNRWLML 330 (348)
Q Consensus 324 ~~r~~~~ 330 (348)
++|+|.|
T Consensus 272 ~~Rkkk~ 278 (279)
T 3c98_B 272 KARRKKI 278 (279)
T ss_dssp -------
T ss_pred HHhCcCc
Confidence 9886544
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.84 E-value=1.2e-20 Score=138.56 Aligned_cols=70 Identities=30% Similarity=0.432 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchhH
Q 018979 260 HSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLM 329 (348)
Q Consensus 260 ~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~~ 329 (348)
++|+++|.+||++|.||++||.+|++||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|+|+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999998763
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.82 E-value=6.8e-20 Score=138.66 Aligned_cols=73 Identities=29% Similarity=0.399 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 018979 254 LQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNR 326 (348)
Q Consensus 254 ~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r 326 (348)
....++++|+++|.+||++|.||++||.+|++||.+||++||+||+||+.|..||++|+.+|.||.+|++++|
T Consensus 11 ~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999876
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.81 E-value=1.7e-19 Score=131.56 Aligned_cols=68 Identities=24% Similarity=0.339 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSIS 323 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~ 323 (348)
..++++|+++|.+||++|.||++||.+|++||.+||++||+||+||+.|..||++|+.+|.||.+|++
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999999999999999999999999999975
No 9
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.80 E-value=5e-19 Score=155.81 Aligned_cols=187 Identities=13% Similarity=0.177 Sum_probs=138.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018979 59 IQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSV-FDDP-----TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNES 132 (348)
Q Consensus 59 ~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~l-f~d~-----~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~ 132 (348)
.++.|+..+++|..+|..++..+.+|.++|++... .++. ..+|+.++..|+..++.|+..|+.|+....
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~----- 77 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI----- 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 36789999999999999999999999999998532 2211 267999999999999999999999986431
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCC
Q 018979 133 GNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTAS 212 (348)
Q Consensus 133 ~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 212 (348)
...++.+++..|..+|++++..|+.++..|.+.+|.+..|+..+..+..++ . .+
T Consensus 78 ------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~----~----e~------------ 131 (196)
T 1fio_A 78 ------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATE----D----EV------------ 131 (196)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCH----H----HH------------
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH----H----HH------------
Confidence 236899999999999999999999999999999999998886654332210 0 00
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHH-HHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 213 PPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQ-QQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQG 291 (348)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q-~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qg 291 (348)
..++.. ......+.+...+++ .+......+++++||++|.+||++|.||++||.+||+||.+||
T Consensus 132 -----------~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 132 -----------EAAISD----VGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp -----------HHHTSH----HHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred -----------HHHHHc----CCchhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000000 000001111111100 0112235678999999999999999999999999999999997
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.77 E-value=1.1e-18 Score=126.88 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYL 319 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~ 319 (348)
..++++|+++|.+||++|.||++||.+|++||.+||++||+||+||+.|..||++|+.+|.||.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999999999999999999999999999999985
No 11
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.77 E-value=1e-18 Score=125.90 Aligned_cols=64 Identities=31% Similarity=0.544 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018979 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLN 320 (348)
Q Consensus 257 ~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~ 320 (348)
+++++|+++|.+||++|.||++||.+|++||.+||++||+||+||+.|..||++|+.+|.||.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999999999999999999999999999999999999999864
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.21 E-value=4.7e-11 Score=103.37 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=96.7
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018979 56 AVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRT-SVFDDP---TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNE 131 (348)
Q Consensus 56 ~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~-~lf~d~---~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~ 131 (348)
....++.|+..+++|..+|..+...+.+|..+|.+. +.+++. ..+++.++..|+...+.|+..|+.|+.......+
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445678999999999999999999999999999984 223322 2789999999999999999999999987654422
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 018979 132 SGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNA 186 (348)
Q Consensus 132 ~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~ 186 (348)
. ..++...+.+.+++..|..+|.+++..|+.++..|.+.+|.+..|+..++++.
T Consensus 114 ~-~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~~I~~~~ 167 (180)
T 1s94_A 114 S-NKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQMEITGRT 167 (180)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-----------
T ss_pred c-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 13455668899999999999999999999999999999998887876665443
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.02 E-value=4.7e-09 Score=85.37 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=96.1
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CC-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018979 58 AIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSV-FD-DP--TFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESG 133 (348)
Q Consensus 58 ~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~l-f~-d~--~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~ 133 (348)
..++.|+..+++|..+|..+...+.+|..+|.+... .+ +. ..+++.++..|+.....|+..|+.|+.......+ .
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~-~ 83 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Confidence 457899999999999999999999999999998521 11 22 2689999999999999999999999876553211 1
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 134 NISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKV 174 (348)
Q Consensus 134 ~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~ 174 (348)
..++...+.+.+++..|..+|.+++..|+.++..|.+.+|.
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455668999999999999999999999999999988875
No 14
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.95 E-value=3.4e-05 Score=57.48 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNR 326 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r 326 (348)
.+.+..|..+|..|.+|-.+|+..|.+|..+||+|+..++.+...+..++..+.+..+..+++|
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 3578999999999999999999999999999999999999999999999999999998776654
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.87 E-value=0.00025 Score=55.71 Aligned_cols=90 Identities=6% Similarity=0.162 Sum_probs=75.7
Q ss_pred HHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCch
Q 018979 248 QQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRW 327 (348)
Q Consensus 248 Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~ 327 (348)
.+...++....+..-+..+.++..-..+|+.|..+=++++..=...++....||+.+...+.+|. +|.++.++++|
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~----~yqk~~rkk~~ 87 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV----KYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcce
Confidence 33444556778899999999999999999999999999999999999999999999999999998 55666677789
Q ss_pred hHHHHHHHHHHHHH
Q 018979 328 LMLKIFFVLVVFLM 341 (348)
Q Consensus 328 ~~~~if~vl~~f~l 341 (348)
||+++++++++++.
T Consensus 88 i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 88 MIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHH
Confidence 88888877655443
No 16
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.0011 Score=53.57 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 018979 59 IQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPT---FEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNI 135 (348)
Q Consensus 59 ~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~---~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~ 135 (348)
.+++|...+..|...|..++..+..|.++.+..+.--|.+ +.|..+...+.+.++.++..|+.|...... .
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~------~ 81 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLP------L 81 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------S
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------c
Confidence 4678999999999999999999999999988876655554 578888999999999999999999864311 0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018979 136 SSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTEN 171 (348)
Q Consensus 136 ~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~ 171 (348)
......+.+....-|...|..+...|+.++..+.+.
T Consensus 82 ~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aek 117 (130)
T 2dnx_A 82 STSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEK 117 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233344444444444444555555555544443
No 17
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.49 E-value=0.00043 Score=49.03 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
.+.+..|..+|..|.+|-.+|+..|..|..+||+|++.++.+...+..++..+.+.
T Consensus 8 D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 8 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999887653
No 18
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.49 E-value=0.0011 Score=49.84 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018979 260 HSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYL 319 (348)
Q Consensus 260 ~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~ 319 (348)
++-.+.+..|..+|..|..|-.+|+..|..|..+||+|+..++.+...+..++..+.+-.
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 334467899999999999999999999999999999999999999999999999887643
No 19
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.47 E-value=0.001 Score=47.20 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
.+.+..|..+|..|.+|-.+|+..|..|..+||+|+..++.+...+..++..+.+.
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999988753
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.14 E-value=0.002 Score=48.34 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018979 263 AEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRY 318 (348)
Q Consensus 263 ~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka 318 (348)
.+.+..|...+..|..|-.+|+..|..|.++||+|+..++.+...|..+++.+.+-
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999988764
No 21
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.98 E-value=0.012 Score=44.35 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLA 306 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~ 306 (348)
+.+.++...+.|+..+..+=-..|.+-||-||.+++..++-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4577888888888888888888899999999998877665444
No 22
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0085 Score=42.11 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVR 317 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~k 317 (348)
+.+..|...+.-|..|-..|+..|..|-++||+|++.++.+...|..++..|.+
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 568889999999999999999999999999999999999999999999988754
No 23
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00019 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.8
Q ss_pred CCcCCChHHHHHHHHHHHhhhhc
Q 018979 8 SSYRDRTQEFLSVVERLKKSVAS 30 (348)
Q Consensus 8 ~~~~DRT~eF~~~v~~~~~~~~~ 30 (348)
|+++|||.||+++|.+++++.+.
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~~~ 28 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRNKN 28 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC--
T ss_pred ccccccCHHHHHHHHHHHhcccc
Confidence 67999999999999999998743
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.46 E-value=0.023 Score=38.47 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 270 ESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316 (348)
Q Consensus 270 e~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ 316 (348)
.+-+.|.-++-.....++.+|||.|+||+.+++.+..+++.|.+.|.
T Consensus 6 ~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 6 LGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 34455556666677789999999999999999999999999998774
No 25
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=96.15 E-value=0.1 Score=38.18 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316 (348)
Q Consensus 259 l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ 316 (348)
.+.-.+.+++..+.+.|--++-.....++..|||.|+||+.+++.+..++..|.+.|.
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~ 75 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3334467777777788888888999999999999999999999999999999998875
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.80 E-value=0.51 Score=33.50 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018979 275 ELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYL 319 (348)
Q Consensus 275 el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~ 319 (348)
|.-+.-..-..++.+|||.|+||+.+++.+..+.+.|.+.|..-.
T Consensus 23 e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 23 DAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444558889999999999999999999999999886543
No 27
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.04 E-value=0.2 Score=36.83 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQL 315 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L 315 (348)
+..++.-+-+.+..+.-..-..++..|||.|+||+.+++....+...|.+.|
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666667777899999999999999999999888776654
No 28
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=92.58 E-value=0.86 Score=31.75 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLV 316 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ 316 (348)
+.+..-.+.+.|--++-..+...+..|+|.|.+....+.++..++..+.+-|.
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 44566666777777888888899999999999999999999999999997774
No 29
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=91.69 E-value=0.0076 Score=47.86 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018979 265 ALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDD 303 (348)
Q Consensus 265 ~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~ 303 (348)
.+.++...+.|+..+..+=-..|.+-||-||.+++..++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 355666667777777777666788888888888776554
No 30
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=89.42 E-value=4.7 Score=29.23 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 018979 258 YMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSN 325 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~ 325 (348)
.++.-.+.+..-...+.|=-+|-..+..-+..|.|.|.+....+.++..++..+.+-|..-.++.-.|
T Consensus 13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~n 80 (81)
T 2nps_C 13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQN 80 (81)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhC
Confidence 34444567788888888888888999999999999999999999999999999999887766654433
No 31
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=89.23 E-value=4.1 Score=29.13 Aligned_cols=70 Identities=6% Similarity=0.152 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCchh
Q 018979 255 QDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWL 328 (348)
Q Consensus 255 ~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r~~ 328 (348)
....+..-...|..|..-..+|+.|..+=+++|..=..-++.-..||+.+...+.+|.. +.++.++++||
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~----~q~~~rkk~~i 77 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK----YQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCcccC
Confidence 34567777888999999999999999999999999999999999999999999999984 55566666664
No 32
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=86.89 E-value=2.9 Score=33.30 Aligned_cols=99 Identities=8% Similarity=0.134 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CC-CCCC
Q 018979 59 IQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQ--NE-SGNI 135 (348)
Q Consensus 59 ~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~--~~-~~~~ 135 (348)
...+|+...++|.+.|..+.....+..++....+. ....|++.++.+++..+..+...|.+|+....-- .+ .-+.
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~--~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l 102 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAA--VGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL 102 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC
Confidence 45679999999999999999999876554332211 1225788889999999999999999998765421 00 0012
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhH
Q 018979 136 SSDTTSHSTTVVDNLKNRLMGTTK 159 (348)
Q Consensus 136 ~~~~~~h~~nvv~~L~~~L~~ls~ 159 (348)
+..+..-|...+..++.++..+..
T Consensus 103 ~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 103 PAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666544
No 33
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=81.39 E-value=14 Score=27.27 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018979 258 YMHSRAEALHNVESTIHEL 276 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el 276 (348)
.+-+|.+.+..+...-.+|
T Consensus 27 kvL~RgekL~~L~~kt~~L 45 (91)
T 3hd7_A 27 KVLERDQKLSELDDRADAL 45 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH
Confidence 3444555554444444333
No 34
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.25 E-value=21 Score=28.07 Aligned_cols=78 Identities=8% Similarity=0.126 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHH--------------------------------
Q 018979 100 EIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVV-------------------------------- 147 (348)
Q Consensus 100 eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv-------------------------------- 147 (348)
|.+.|+..|...|..++..+..|+.+.+.-+.. .+....+..+.
T Consensus 11 ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~----kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~ 86 (130)
T 2dnx_A 11 DFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK----QDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQ 86 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 456677777777777777777777765543210 11111111111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 018979 148 DNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQL 181 (348)
Q Consensus 148 ~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~ 181 (348)
...+....+|+.+|+.++..|....+...++.+.
T Consensus 87 r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 87 RQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233467789999999999998877766666643
No 35
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=77.86 E-value=19 Score=26.80 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 018979 61 SEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTT 140 (348)
Q Consensus 61 ~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~ 140 (348)
.+|+.-..+|...|..+...+.+ + ..........|+...-..+..++..|.+.|.-.+.. +..+.
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~----~-~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI 70 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR----H-NTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDV 70 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----T-CCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH----c-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHH
Confidence 56999999999999999988654 1 111112233566666666666666666666654421 45667
Q ss_pred hhHHHHHHHHHHHHHHHhHHHH
Q 018979 141 SHSTTVVDNLKNRLMGTTKEFK 162 (348)
Q Consensus 141 ~h~~nvv~~L~~~L~~ls~~Fk 162 (348)
..|+..+..+..++..+...|.
T Consensus 71 ~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 71 SGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999888877764
No 36
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=77.86 E-value=20 Score=26.91 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 018979 61 SEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIK-QDITALNSAVVDLQLLCNSQNESGNISSDT 139 (348)
Q Consensus 61 ~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt~~Ik-~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~ 139 (348)
.+|......+...|. .|.++..+-+.--|.. +|...|. +.+..|+..-+++.....- +
T Consensus 6 ~d~~~li~t~s~niq-------~l~k~~~qlGTkrD~~----~LR~~l~~~l~~~~~~L~k~~~~l~~l--------~-- 64 (97)
T 1hs7_A 6 KELSNLIETFAEQSR-------VLEKECTKIGSKRDSK----ELRYKIETELIPNCTSVRDKIESNILI--------H-- 64 (97)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHTTSSSCCH----HHHHHHHHTHHHHHHHHHHHHHHSTHH--------H--
T ss_pred ccHHHHHHHHHHHHH-------HHHHHHHHhCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHhccc--------c--
Confidence 345555555555555 5555555555444444 3555555 5566666655555521110 0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018979 140 TSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKV 174 (348)
Q Consensus 140 ~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~ 174 (348)
-..-|...|..+...|+.++..|.++.+.
T Consensus 65 ------qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 65 ------QNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp ------HCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12356678888888888888888765543
No 37
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=72.21 E-value=4 Score=23.32 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=17.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 018979 324 SNRWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 324 ~~r~~~~~if~vl~~f~l~f~~~ 346 (348)
+.+-+++-+.+|||..+++|+++
T Consensus 4 n~qELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 4 NTRELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888875
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.97 E-value=40 Score=31.50 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018979 63 FNKRASKIGYGIHQTSQKLAKLAKLAKRTSV--------FDDPTFEIQELTAVIKQDITALNSAVVDLQLLCN 127 (348)
Q Consensus 63 F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~l--------f~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~ 127 (348)
..+.-..+...|.+|+..|..+.+.++.... .-.+-.++.+....+.+....++++|..|+..+.
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467888888888888888777765310 0011123333334444445555556655555443
No 39
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=64.20 E-value=42 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLA 306 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~ 306 (348)
+.|.+|...|.|+..|..+=-..|.+-||-|+.+++..+.-..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~ 72 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3577788888888888888888899999999988877665433
No 40
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=48.90 E-value=73 Score=24.01 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCcchhhhHHHHHHHHHHHHHHHhHHHH
Q 018979 99 FEIQELTAVIKQDITALNSAVVDLQLLCNSQN-ESGNISSDTTSHSTTVVDNLKNRLMGTTKEFK 162 (348)
Q Consensus 99 ~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~-~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk 162 (348)
..|++|..+|+..=.++-...++|+...+.-. ..+..|.+...-|..+|..|+.++..+-...-
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665554455444455544332211 11224566667788888888888876655433
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.04 E-value=1.4e+02 Score=29.07 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRT-----SV---FDDPTFEIQELTAVIKQDITALNSAVVDLQLLC 126 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~-----~l---f~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~ 126 (348)
.....+.=..+.+-|++++..+++|.+.++.. .+ .-.+-....+....+.+.-..|+++|..|+..+
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 44556666788888899999998886655542 00 111112222333334333445666666666544
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=47.20 E-value=74 Score=22.62 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
..|..+|..+.-.-..-.+|+..|.+|...||++...+..-...+....
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777788877788888888999999999999888877776665433
No 43
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=46.66 E-value=69 Score=22.08 Aligned_cols=59 Identities=5% Similarity=0.105 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018979 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQL 315 (348)
Q Consensus 257 ~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L 315 (348)
..+..-...|..|..-..+|+.|..+=+++|..=..-++....||+.+...+.+|...-
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677889999999999999999999999999999999999999999999998543
No 44
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=43.67 E-value=24 Score=22.32 Aligned_cols=18 Identities=17% Similarity=0.622 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018979 329 MLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 329 ~~~if~vl~~f~l~f~~~ 346 (348)
.+-+++++|..+++++++
T Consensus 32 fvnfclilicllli~iiv 49 (52)
T 1fjk_A 32 FINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 45
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=41.19 E-value=71 Score=22.29 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018979 266 LHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDT 304 (348)
Q Consensus 266 i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~ 304 (348)
+.++...|.|+..|..+=-..|.+-||-|+.+.+-.+.-
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L 48 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555556666666665567778888888777665553
No 46
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=40.99 E-value=7.4 Score=21.47 Aligned_cols=9 Identities=56% Similarity=0.778 Sum_probs=6.8
Q ss_pred cCCChHHHH
Q 018979 10 YRDRTQEFL 18 (348)
Q Consensus 10 ~~DRT~eF~ 18 (348)
|+|||.|++
T Consensus 1 mrdrthelr 9 (29)
T 2pjx_C 1 MRDRTHELR 9 (29)
T ss_pred Cccchhhhh
Confidence 578888874
No 47
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=39.19 E-value=1e+02 Score=23.61 Aligned_cols=64 Identities=11% Similarity=0.316 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018979 257 SYMHSRAEALHNVESTIH----ELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLN 320 (348)
Q Consensus 257 ~~l~~R~~~i~~ie~~i~----el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~ 320 (348)
.|+++|-+.+..|-..|. +++++|..++++=.-...+=..+..|+-.-=..++.+...|+|=++
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK 71 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 71 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888887776655 4466666666533222223333455555555555555555555444
No 48
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=39.05 E-value=91 Score=21.32 Aligned_cols=58 Identities=3% Similarity=0.094 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQS 313 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~ 313 (348)
...+..-...|..|..-..+|+.|..+=+.+|..=...++.-..||+.+...+.+|.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777777777777777778877777777754
No 49
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.63 E-value=80 Score=19.66 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAK 86 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~ 86 (348)
+.+.+.....|..+|..+..++.+|..
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766543
No 50
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.32 E-value=1.2e+02 Score=21.60 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHH
Q 018979 100 EIQELTAVIKQDITALNSAVVDLQLLCNSQN-ESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKE 163 (348)
Q Consensus 100 eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~-~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~ 163 (348)
.|++|..+|+..=..+-...++|+....... ..+..|.+...-|..+|..|+.+|..+-...-+
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666665555555555554433211 112346677788899999999998876554433
No 51
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=35.17 E-value=1.2e+02 Score=21.55 Aligned_cols=63 Identities=5% Similarity=0.111 Sum_probs=54.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018979 252 VPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQ 314 (348)
Q Consensus 252 ~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~ 314 (348)
+.+....+..-...|..|..-..+|+.|..+=+++|..=..-++....||+.+...+.+|.+.
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888899999999999999999999999999999999999999999999988753
No 52
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=34.73 E-value=1e+02 Score=20.74 Aligned_cols=56 Identities=7% Similarity=0.168 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 257 SYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 257 ~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
..++.-...|..|..-..+|+.|..+=+.+|..=..-++.-..||+.+...+.+|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566667777888888888888888888888888888888888888888877664
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.21 E-value=3.5e+02 Score=25.99 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018979 62 EFNKRASKIGYGIHQTSQKLAKLAKLAK 89 (348)
Q Consensus 62 ~F~~~a~~I~~~I~~~~~~L~~L~~L~k 89 (348)
-+.+.-..|.++|..+...|.+|++...
T Consensus 90 ~L~k~q~~V~~~LqeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 90 TLLKQEKTVKPVLRDLKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHhHHHHHHHHHHHHhhhhh
Confidence 3444445689999999999998866443
No 54
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=31.94 E-value=1.5e+02 Score=24.12 Aligned_cols=114 Identities=8% Similarity=0.042 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhh
Q 018979 67 ASKIGYGIHQTSQKLAKLAKLAKRT----SVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSH 142 (348)
Q Consensus 67 a~~I~~~I~~~~~~L~~L~~L~k~~----~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h 142 (348)
....-..+..++..|.+|..+..+- .-+-..+..-..+...+...+..++.....++...+.-.......+. ..-
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~-~~~ 116 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH-SNK 116 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCC
Confidence 3456677778888888877665542 11222122222223333333333333333333222211000000000 011
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 018979 143 STTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQL 181 (348)
Q Consensus 143 ~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~ 181 (348)
.......-+.....++..|+++...|.......+++++.
T Consensus 117 ~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~ 155 (180)
T 1s94_A 117 SSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKA 155 (180)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233457788899999999999999998766665555543
No 55
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=31.38 E-value=1.6e+02 Score=21.81 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHH
Q 018979 100 EIQELTAVIKQDITALNSAVVDLQLLCNSQN-ESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEV 164 (348)
Q Consensus 100 eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~-~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~ 164 (348)
.|++|..+|+..=..|-...++|+....... ..+..|.+...-|..+|..|+.+|..+-...-+.
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555555554333211 1123467777889999999999988765554333
No 56
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=31.26 E-value=3e+02 Score=24.89 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979 258 YMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVE 309 (348)
Q Consensus 258 ~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~ 309 (348)
.+..-.+.+..|...+.++...+.+++.-+.+|...++.|..++.....-++
T Consensus 221 ~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~ 272 (341)
T 3zx6_A 221 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQ 272 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788888889999999999999999998888888777665544333
No 57
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=31.23 E-value=26 Score=31.72 Aligned_cols=20 Identities=35% Similarity=0.904 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 018979 326 RWLMLKIFFVLVVFLMIFLFF 346 (348)
Q Consensus 326 r~~~~~if~vl~~f~l~f~~~ 346 (348)
|||++ +|.+.|+|.++|+++
T Consensus 56 ~ww~~-~f~~~iv~~~~y~~~ 75 (311)
T 3mk7_C 56 RWWFL-LFIGTLVFGILYLVL 75 (311)
T ss_dssp HHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHHHH
Confidence 56665 677778888888764
No 58
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.15 E-value=1.2e+02 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018979 266 LHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDD 303 (348)
Q Consensus 266 i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~ 303 (348)
|.+|...|.|+..|..+=-..|.+-||-|+.+++-.+.
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55666667777777777777888889998888876654
No 59
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=29.95 E-value=1.8e+02 Score=21.95 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCcch--
Q 018979 68 SKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELT-----AVIKQDITALNSAVVDLQLLCNSQNESG-NISSDT-- 139 (348)
Q Consensus 68 ~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~~eI~~Lt-----~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~-~~~~~~-- 139 (348)
...-..+..+...|.+|..+.++-.- ....+ |+ ..++..+..+...|..+-...+..-..- ..+...
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~---~~~~~--L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 82 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKR---KHSAI--LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566778888888887776654210 00111 22 2344555555555544443333211000 000000
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 018979 140 TSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQL 181 (348)
Q Consensus 140 ~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~ 181 (348)
..........-.+....++..|+++...|.......+++++.
T Consensus 83 ~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 83 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234557889999999999999999999877777777753
No 60
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=28.59 E-value=1.4e+02 Score=20.25 Aligned_cols=57 Identities=5% Similarity=0.115 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018979 256 DSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQ 312 (348)
Q Consensus 256 ~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~ 312 (348)
...+..-...|..|..-..+|+.|..+=+.+|..=..-++.-..||+.+...+.+|.
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666677777777777777777777777777777777777777777776653
No 61
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.18 E-value=1.4e+02 Score=20.19 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018979 266 LHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDD 303 (348)
Q Consensus 266 i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~ 303 (348)
+..+...+.++..+..+=-..|.+-||-|+.|++-++.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777888888888888776665
No 62
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=27.97 E-value=2.5e+02 Score=22.93 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 018979 148 DNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLF 182 (348)
Q Consensus 148 ~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~ 182 (348)
...+.....++..|+++...|........++++..
T Consensus 80 r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~ 114 (196)
T 1fio_A 80 TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQ 114 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778899999999999988777777777543
No 63
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=27.88 E-value=2.8e+02 Score=23.57 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018979 259 MHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEG 310 (348)
Q Consensus 259 l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~ 310 (348)
+..-.+.+..|...+.++..++.+++..+.+|...++.|...+.....-.+.
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 142 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444467788888888899999999999999998888888777665544433
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.80 E-value=4.4e+02 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018979 278 NIFTQLATMVSQQGEIAIRIDENMDDTLAN 307 (348)
Q Consensus 278 ~lf~~l~~~V~~Qge~id~Id~nv~~~~~~ 307 (348)
...+-|-.-|.+|-.-|.|+|-+|+.-..+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333555556777778888888888776554
No 65
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=27.16 E-value=2.1e+02 Score=21.79 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCcchhhhHHHHHHHHHHHHHHHhHH
Q 018979 100 EIQELTAVIKQDITALNSAVVDLQLLCNSQN-ESGNISSDTTSHSTTVVDNLKNRLMGTTKE 160 (348)
Q Consensus 100 eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~-~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~ 160 (348)
.|++|..+|+..=..|-...++|+...+... ..+..|.+...-|..+|..|+.++..+-..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrq 84 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQ 84 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444455554332211 112246677778889999999988765443
No 66
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=26.51 E-value=76 Score=18.55 Aligned_cols=10 Identities=30% Similarity=0.809 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 018979 337 VVFLMIFLFF 346 (348)
Q Consensus 337 ~~f~l~f~~~ 346 (348)
.+-+++|.+|
T Consensus 13 tlgiiFFAI~ 22 (32)
T 3arc_T 13 IIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 3333444444
No 67
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=26.50 E-value=2.4e+02 Score=24.68 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 018979 145 TVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSS 224 (348)
Q Consensus 145 nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (348)
.....-+..+..++..|+++...|.......+++++....... .+.+ |.+. +. ...
T Consensus 111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-----------~i~~----------~~~t--de-eie 166 (267)
T 1dn1_B 111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-----------EITG----------RTTT--SE-ELE 166 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHTT----------CCCC--HH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-----------hccC----------CCCC--HH-HHH
Confidence 3446677888889999999999998877777777764332211 0100 0000 00 000
Q ss_pred CCCCCccCCCCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018979 225 RLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDT 304 (348)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~ 304 (348)
.+++.+ +. ..+. |..+++ ....+.-..+|+.=+..|..|..=..+|..++.+=+.+|..=...++..
T Consensus 167 ~~ie~g--~~---~~f~------q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~I 233 (267)
T 1dn1_B 167 DMLESG--NP---AIFA------SGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 233 (267)
T ss_dssp HHHHTC--SS---CTTT------TTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCH
T ss_pred HHHhCC--cH---HHHH------HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 011100 00 0011 111122 1223333456666666677777777778888888888888777777888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018979 305 LANVEGAQSQLVRYLNS 321 (348)
Q Consensus 305 ~~~v~~g~~~L~ka~~~ 321 (348)
..||+.+...+.+|...
T Consensus 234 e~nv~~a~~~v~~~~~~ 250 (267)
T 1dn1_B 234 EYNVEHAVDYVERAVSD 250 (267)
T ss_dssp HHHHHTCCCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887766555544443
No 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.78 E-value=4.7e+02 Score=25.06 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKR 90 (348)
Q Consensus 60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~ 90 (348)
.....+.=+.+..-|.+++..|.++.++++.
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~~~s~s~~~ 83 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLADSQNKYKT 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHhhcch
Confidence 4456666778899999999999988776654
No 69
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=24.17 E-value=85 Score=18.99 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 018979 334 FVLVVFLMIFLF 345 (348)
Q Consensus 334 ~vl~~f~l~f~~ 345 (348)
.+++.|+-+|+.
T Consensus 10 ~vV~ffvsLFiF 21 (38)
T 3arc_I 10 IVVTFFVLLFVF 21 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 355555556654
No 70
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.88 E-value=2.4e+02 Score=20.77 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979 100 EIQELTAVIKQDITALNSAVVDLQLLCNS 128 (348)
Q Consensus 100 eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~ 128 (348)
+-......|...+..+...|.++.-.+..
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~ 63 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVRE 63 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667888888889998888765543
No 71
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.29 E-value=1.8e+02 Score=18.96 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQL 315 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L 315 (348)
+.+.+++..+.++.+.+...-..+...-.-+++...++..+.++|..=+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777666666666666666667777777777777666555444
No 72
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=20.49 E-value=2e+02 Score=19.14 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018979 264 EALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLA 306 (348)
Q Consensus 264 ~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~ 306 (348)
+.+.++...+.|+..+..+=-..|.+-||-|+.+++..+.-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4577888888899888888888899999999988877665443
No 73
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=20.38 E-value=4e+02 Score=22.65 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018979 145 TVVDNLKNRLMGTTKEFKEVLTMRTEN 171 (348)
Q Consensus 145 nvv~~L~~~L~~ls~~Fk~~~~~r~~~ 171 (348)
-.+...+..+-.-|+.|.+.+..|.+.
T Consensus 151 ~~le~~KreFVkySKrFS~TLKeYFkd 177 (213)
T 3ajm_A 151 RALEHQKKEFVKYSKSFSDTLKTYFKD 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHhc
Confidence 456678899999999999999999663
Done!