BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018980
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/265 (73%), Positives = 224/265 (84%), Gaps = 1/265 (0%)
Query: 83 QEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATA 142
+E+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATA
Sbjct: 5 EEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATA 64
Query: 143 LNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 202
L+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN
Sbjct: 65 LDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNV 124
Query: 203 VMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMD 262
VMGNK++VLAGDFLLSRAC ALA+LKN GETM++T+S++QR SMD
Sbjct: 125 VMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMD 184
Query: 263 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 322
YYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSA
Sbjct: 185 YYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSA 244
Query: 323 SLGKGSLSDIRH-VIYLSLLFIASE 346
SLGKGSLSDIRH VI +LF E
Sbjct: 245 SLGKGSLSDIRHGVITAPILFAMEE 269
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 222/265 (83%), Gaps = 1/265 (0%)
Query: 83 QEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATA 142
+E+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATA
Sbjct: 5 EEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATA 64
Query: 143 LNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 202
L+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN
Sbjct: 65 LDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNV 124
Query: 203 VMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMD 262
VMGNK++VLAGDFLLSRAC ALA+LKN GETM++T+S+ R SMD
Sbjct: 125 VMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTAARYSMD 184
Query: 263 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 322
YYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSA
Sbjct: 185 YYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSA 244
Query: 323 SLGKGSLSDIRH-VIYLSLLFIASE 346
SLGKGSLSDIRH VI +LF E
Sbjct: 245 SLGKGSLSDIRHGVITAPILFAMEE 269
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 20/243 (8%)
Query: 92 VADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 150
+A++++ + +R + +E P++ + + G GKR RP +L +A A V P
Sbjct: 18 LAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRP--MLTLAAARLVGYGGP 73
Query: 151 LHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAV 210
H +A E IH A+LLHDDV+D++ RRG + N + NK +V
Sbjct: 74 FH---------------VHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSV 118
Query: 211 LAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYY 270
L GD+L +R+ + N GE +Q+T + + + D Y++
Sbjct: 119 LVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRG 178
Query: 271 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 330
KTA+L S + + ++ G + FDYG LG+A+Q++DD+LD+ G SA +GK +
Sbjct: 179 KTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGD 238
Query: 331 DIR 333
D R
Sbjct: 239 DFR 241
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 121/249 (48%), Gaps = 21/249 (8%)
Query: 99 LAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 158
+ KRL + ++ + AA + G GKR RP +LL L+D +D
Sbjct: 17 VEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDD 65
Query: 159 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLS 218
L +RT A E++H+ASL+HDD +D++D RRG S++ A+ G FLL+
Sbjct: 66 L---IRT-----AVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLA 117
Query: 219 RACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 278
RA +A++ N GE QM + S Y+++ KTA LI
Sbjct: 118 RALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEA 177
Query: 279 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR--HVI 336
SC AL + + +G +G++YQ+IDD+LD+T A+LGK SDIR H+
Sbjct: 178 SCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHIT 237
Query: 337 YLSLLFIAS 345
Y + IA+
Sbjct: 238 YPLMAAIAN 246
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 106/227 (46%), Gaps = 22/227 (9%)
Query: 108 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167
VA +P LA E+ G GKR RP L+ +A A LA
Sbjct: 50 VAIIPALA---EHLIAAG--GKRLRP--LMTVAAAR---------------LAGADNDHF 87
Query: 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227
Q +A E IH A+LLHDDV+D + RRG + + + G +VL GDFL +RA +
Sbjct: 88 QKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVET 147
Query: 228 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA 287
+ GE +Q+ S D S Y++ KTA L + + +A A+ A
Sbjct: 148 NSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSA 207
Query: 288 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
G + DYG NLGLA+QL DD LD+ G + +LGK + D R
Sbjct: 208 GVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFRE 254
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GK RP L +T N P L G A E++HV +L+HDDV
Sbjct: 55 GKLLRPGYFYLFSTFGNAATPAQLQAG----------------AAAIEILHVGTLIHDDV 98
Query: 188 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC-VALASLKNXXXXXXXXXXXXXXXXG 246
+DD+ TRRG+ ++ G + A+ AGDF+ + L S + G
Sbjct: 99 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQG 158
Query: 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 306
E QM + + ++D Y+ + KTA L + SC A LAG V D G +G
Sbjct: 159 ELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGC 218
Query: 307 AYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 337
AYQ++DD+LD+ G K L D+R +Y
Sbjct: 219 AYQMLDDILDYAGDPKRTQKPVLEDLRSGVY 249
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GK RP L +T N P L G A E++HV +L+HDDV
Sbjct: 48 GKLLRPGYFYLFSTFGNAATPAQLQAG----------------AAAIEILHVGTLIHDDV 91
Query: 188 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC-VALASLKNXXXXXXXXXXXXXXXXG 246
+DD+ TRRG+ ++ G + A+ AGDF+ + L S + G
Sbjct: 92 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQG 151
Query: 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 306
E QM + + ++D Y+ + KTA L + SC A LAG V D G +G
Sbjct: 152 ELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGC 211
Query: 307 AYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 337
AYQ++DD+LD+ G K L D+R +Y
Sbjct: 212 AYQMLDDILDYAGDPKRTQKPVLEDLRSGVY 242
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 25/251 (9%)
Query: 89 FSLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 147
F+ + ++ ++ +++ ++ + P+ L AA ++ G GKR RP V+L A+
Sbjct: 8 FARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVG--- 62
Query: 148 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 207
+PL + A+A EL IH SL+HDD++D +TRRG +++ + G
Sbjct: 63 GDPLR-AIYPAVAIEL-------------IHNYSLVHDDIMDMDETRRGKPTVHRIWGVN 108
Query: 208 LAVLAGDFLLSRACVALASL-----KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMD 262
+A+LAGD L S+A A+A K G+ + +++
Sbjct: 109 MAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIE 168
Query: 263 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 322
YM+ KT +L S K ++ E +G+N+G+A+Q+ DDVLD
Sbjct: 169 EYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEK 228
Query: 323 SLGKGSLSDIR 333
LGK SDIR
Sbjct: 229 KLGKPVGSDIR 239
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 173 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXX 232
I EMI ASLLHDDV+D A RR + S+N + GN AV+ GD S+A L+ +
Sbjct: 65 IVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKM-GELI 123
Query: 233 XXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 292
GE + Y + KTA I S K++A+L + A+
Sbjct: 124 AQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAK 183
Query: 293 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
+ D+G N G+A+Q+IDD+LD T + +LGK + SD +
Sbjct: 184 IYA---DFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKE 222
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GK RP ++LL+A P LH V E++H ASL+HDDV
Sbjct: 47 GKMMRPILVLLVARLYGAVTPATLHAAVS-----------------LELLHTASLVHDDV 89
Query: 188 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGE 247
+D++ RRG S+N + NK++VLAGD+LL+ + V N GE
Sbjct: 90 VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGE 149
Query: 248 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 307
+Q++ S+ S + Y KTA+L + +A AL E A G+ +G+
Sbjct: 150 LLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGIC 209
Query: 308 YQLIDDVLDFTGTSASLGKGSLSDI 332
+Q+ DD+ D+ S +GK + +D+
Sbjct: 210 FQIKDDIFDYFD-SKKIGKPTGNDM 233
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GKRFRP + L+A+ + PL + V A A + E+ H+A+L HDDV
Sbjct: 74 GKRFRP-MFALLASEFGEK---PLSENVIKA------------AVVVEITHLATLYHDDV 117
Query: 188 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGE 247
+D+A RRG+ S N N +A+LAGD LL+ A ++ L
Sbjct: 118 MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAHFAETFGELVTG-- 175
Query: 248 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 307
M+ T +++Y KT LI+++ A+ AG E ++G +G+
Sbjct: 176 QMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMI 235
Query: 308 YQLIDDVLDFTGTSASLGKGSLSDIRHVIY-LSLLFIASE 346
+Q++DD++D + GK +D+R ++ L +L+ E
Sbjct: 236 FQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALRE 275
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKARR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 104 RSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163
S+ + E P L E+ G GKR RP +LLL++ + +
Sbjct: 20 ESITLIEDPGLKKXVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGS 60
Query: 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVA 223
+R A E H ASL+HDD+LD RR + S G A+L GD+L++++ +A
Sbjct: 61 YSRSLNAALAVEXXHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IA 119
Query: 224 LASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 283
S GE + + + DY+ + Y KTASL + S
Sbjct: 120 FISPYGEKVIQDFGKAGXDXAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIG 178
Query: 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 317
A G E+A +G LG AYQ++DD+L+F
Sbjct: 179 AYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 212
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E+ H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELYHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+A LLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLAFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ SLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLYSLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A RG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ASLLHDDV+D A R G ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 234
E++H+ LLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLYFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 235 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 294
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 295 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
++ G +G YQ+ DD++DF G +GK D+++
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 29/244 (11%)
Query: 103 LRSMVVAEVPKLASAAEYFFKM---------GVEGKRFRPTVLLLMATALNVRVPEPLHD 153
LR+ V P + + A Y F G GK RP + +L A PE
Sbjct: 20 LRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGA-APEV--- 75
Query: 154 GVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAG 213
GV A+A EL +H SLLHDD++D + RR ++ V G A+L G
Sbjct: 76 GVPGAVAVEL-------------VHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVG 122
Query: 214 DFLLSRA---CVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYY 270
D L + A + L +++ G+ ++ R S++ ++
Sbjct: 123 DALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGN 182
Query: 271 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 330
KT +L++ + A+L G A YG +LGLA+Q +DD+L G + GK + S
Sbjct: 183 KTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWS 242
Query: 331 DIRH 334
D+R
Sbjct: 243 DLRQ 246
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 121 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 180
+++ GKR RP LL +A A +A++ + R A I E+IH
Sbjct: 38 LYQVKTGGKRLRP--LLTLAAA--------------EAVSGQWRPALPAAA-IVELIHNY 80
Query: 181 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL---KNXXXXXXXX 237
SL++DD++D D RRG+ ++ G+ A+L G + R + A L K
Sbjct: 81 SLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVG--IWYREAIEEAVLDTPKPTLFAKEVA 138
Query: 238 XXXXXXXXGETMQMTTSSDQR------------CSMDYYMQKTYYKTASLISNSCKAIAL 285
GE + + + R ++D Y++ KT +LI+ + K L
Sbjct: 139 EVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVL 198
Query: 286 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
+A A+++G G+A+Q+IDDVLD G GK DI+
Sbjct: 199 SVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKE 247
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 11/170 (6%)
Query: 174 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS----- 226
EMIH SL+HDD+ +D+ D RRG + + G +AVLAGD LLS A +A+
Sbjct: 72 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAAATKGA 131
Query: 227 ----LKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKA 282
+ G+ + + + +D+ ++KTA+L+ S
Sbjct: 132 PPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQGSVVL 191
Query: 283 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 332
A+L G E + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 192 GAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDL 241
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 29/244 (11%)
Query: 111 VPKLASAAEYF-----FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165
+PK+ S +F + GK FR +LL + + PE L+ ++ ALA E
Sbjct: 17 LPKVESFHPFFNEALALXLKAGGKHFRAQLLL---SVVQSNKPELLNQALDVALALE--- 70
Query: 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVA 223
IH SL+HDD+ D+AD RRGI +L+ A+L GD L + A +
Sbjct: 71 ----------FIHTYSLIHDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLV 120
Query: 224 L--ASLKNXXXXXXXXXXXXXX-XXGETMQMTTS---SDQRCSMDYYMQKTYYKTASLIS 277
L A LK+ G + D+R S++ +KTA LI+
Sbjct: 121 LSHAHLKDEIKIKLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIA 180
Query: 278 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 337
+ K + E + + G LGL +Q+ DD++D T + GK + +DI +
Sbjct: 181 AALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSF 240
Query: 338 LSLL 341
++LL
Sbjct: 241 VNLL 244
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 122 FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVAS 181
+ + V GKR RP ++LL + L A EMIH S
Sbjct: 68 YSINVGGKRIRPILMLLSYYIYKSDYKKIL-----------------TPAMAIEMIHTYS 110
Query: 182 LLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA--SLKNXXXXXXXX 237
L+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A L SL+
Sbjct: 111 LIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKAT 170
Query: 238 XXXXXXX------XGETMQMTTSSDQRCS---MDYYMQKTYYKTASLISNSCKAIALLAG 288
G+ + + + S +DY K KT LI S + A+LA
Sbjct: 171 KIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLK---KTGELIKASIMSGAVLA- 226
Query: 289 QTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
+ +E I + +G LGLA+Q+ DD+LD G + LGK D
Sbjct: 227 EASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKD 270
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 184 HDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXX 243
HDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKM 139
Query: 244 XXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 303
E ++ S + + + Y++ K+ +L + + ALL G+ E ++ G
Sbjct: 140 SEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED---LYNLGVT 195
Query: 304 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
+G YQ+ DD++DF G +GK D+++
Sbjct: 196 IGTIYQMFDDIMDFAGME-KIGKDGFLDLKN 225
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 126 VEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 185
V G R RP ++L + L V E L D +A E+ H ASL+HD
Sbjct: 44 VGGXRIRPLLVLTLGEDLGVE-EEXLLD----------------VAVAVELFHTASLIHD 86
Query: 186 DV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXX 243
D+ +D+AD RRG S + G +A+LAGD L A ++ + N
Sbjct: 87 DLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXL 146
Query: 244 XXGETMQMTTSSDQRCSMDYYMQKTY-YKTASLISNSCKAIALLAGQTAEVAILAFDYGK 302
GE M + +++ Y + T +L + A +L G L G+
Sbjct: 147 LLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXL---LGE 203
Query: 303 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHV 335
G+A+Q+ DD+ D G+ +GK D V
Sbjct: 204 XFGVAFQIYDDLXDILGSFEKVGKDLGKDTEXV 236
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 104/246 (42%), Gaps = 28/246 (11%)
Query: 110 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 169
E +L A Y G GKR RP ++L A E+ T+
Sbjct: 34 ENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQ----------------KEMETQDYQ 75
Query: 170 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227
+A EMIH SL+HDD+ D RRG + + V G A+LAGD LL+ A L+
Sbjct: 76 VAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135
Query: 228 KNXXXXXXXXXXXXXXXXGE----TMQMTTSSDQRCSMDYYMQKTYY--KTASLISNSCK 281
+ G + QM ++ S+ + KT +LI +
Sbjct: 136 QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALI 195
Query: 282 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK--GSLSDIRHVIYLS 339
A +LA QT EV L + + GLA+Q+ DD+LD T T A LGK G + Y +
Sbjct: 196 AGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPA 255
Query: 340 LLFIAS 345
LL IA
Sbjct: 256 LLGIAG 261
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 97/233 (41%), Gaps = 29/233 (12%)
Query: 109 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168
A +L +A Y G GKR RP +L A+A V L D AL
Sbjct: 28 APANQLHNAMRYSLFNG--GKRIRP--MLTYASAQLVGDISSLTDASAAAL--------- 74
Query: 169 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 226
E IH SL+HDD+ +D+ + RRG + + A+LAGD L + A L++
Sbjct: 75 ------ESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSN 128
Query: 227 LKNXXXXXXXXXXXXXXXXGETMQMTT-------SSDQRCSMDYYMQKTYYKTASLISNS 279
+ M T S ++ S+ Q +KT +LI S
Sbjct: 129 PTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKAS 188
Query: 280 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
+ AL GQ + D Y +GLA+Q+ DD++D T + +LGK SD
Sbjct: 189 VRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSD 241
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 34/250 (13%)
Query: 87 DPFSLVADELSILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 145
DP S + + + K L S V P K+ A Y G GKR RP VL + A L
Sbjct: 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAG--GKRVRP-VLCIAACELV- 67
Query: 146 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFV 203
G E++LA A E IH SL+HDD+ D+ D RRG + + V
Sbjct: 68 --------GGEESLAXP-------AACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKV 112
Query: 204 MGNKLAVLAGDFLLSRACVALASLKNXXXXX----------XXXXXXXXXXXGETMQMTT 253
G +AVLAGD LLS A LAS + G+ + +++
Sbjct: 113 YGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISS 172
Query: 254 SS--DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 311
+++ +KTA+L+ S ++ G + E + + +GL +Q++
Sbjct: 173 EGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVV 232
Query: 312 DDVLDFTGTS 321
DD+LD T +S
Sbjct: 233 DDILDVTKSS 242
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 34/245 (13%)
Query: 101 KRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 160
++L + ++ P++ SA Y G GKR RP ++ L ++V GV D +A
Sbjct: 25 EQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDV------DQGVLDIIA 76
Query: 161 TELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLS 218
L E+ H SL+HDD+ +D+ D RRG S + A+L GD + +
Sbjct: 77 AAL-----------ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQA 125
Query: 219 RACVAL----------ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT 268
A L A + G+++ ++ + + + +
Sbjct: 126 LAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIH 185
Query: 269 YYKTASLISNSCKAIALLAGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGK 326
KT LI +C + L A I + YGK++GL +Q+ DD LD + LGK
Sbjct: 186 LLKTGKLIL-ACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGK 244
Query: 327 GSLSD 331
G SD
Sbjct: 245 GRSSD 249
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 175 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA---CV--ALASL 227
E +H SL+HDD+ +D+ D RRG+ +++ + AVLAGD L + A C L S
Sbjct: 72 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA 131
Query: 228 KNXXXXXXXXXXXXXXXX---GETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAI 283
+N G+ + + + ++D ++ KT +LIS + +A
Sbjct: 132 ENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAG 191
Query: 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK--GSLSDIRHVIYLSLL 341
A+LAG A+ L Y LGLA+Q+ DD+LD G + GK G ++ ++SLL
Sbjct: 192 AILAG--ADRGPLTA-YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL 248
Query: 342 FIAS 345
+A
Sbjct: 249 GLAG 252
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 32/234 (13%)
Query: 121 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 180
+ + GKR RP +LLL +LN G++ A+A E MIH
Sbjct: 35 LYSLNAGGKRIRPVLLLLTLDSLNTEYEL----GMKSAIALE-------------MIHTY 77
Query: 181 SLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS-------LKNXX 231
SL+HDD+ +D+ D RRG + + V G A+LAGD LL++A ++S +K
Sbjct: 78 SLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKV 137
Query: 232 XXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--Q 289
G M S Q ++ KT +L++ + + A +A
Sbjct: 138 LQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDD 197
Query: 290 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH--VIYLSLL 341
T + + ++ Y +LG+ +Q+ DD+LD G A LGK SD+ + Y+SLL
Sbjct: 198 TTKEHLESYSY--HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLL 249
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 29/229 (12%)
Query: 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVR-VPEPLHDGVEDALATELRTRQQCIA 171
+LA+A Y G GKR RP + + +L V VPE R + +A
Sbjct: 35 QLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFVPE--------------RHWRPVMA 78
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 229
E++H SL+HDD+ +D+ RRG + + G +A LAGD LL+ A L +
Sbjct: 79 --LELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL 136
Query: 230 XXXXXXXXXXXXXXXXGET----MQMTTSSDQRCSMDYYMQKTYY--KTASLISNSCKAI 283
G + Q + ++ + + KT +L+ + +A
Sbjct: 137 PATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQA- 195
Query: 284 ALLAGQTAEVAILAF-DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
L+ GQ E A+ + GLA+Q+ DD+LD + A +GK + D
Sbjct: 196 GLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKD 244
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 171 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNX 230
A I E++HV SLL DDV+D D RRGI + + G+ A++A D+L++ + +L
Sbjct: 74 AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNL-GA 132
Query: 231 XXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 290
G+ + + D+ +KTA LI + ++ G+
Sbjct: 133 DVVTYLADVAQRLSVGQALDLEGERDKAAE---------FKTAPLIEAALVMPLVILGRR 183
Query: 291 AEVAILAFDYGKNLGLAYQLIDDVLD 316
E+ A G LG+ YQ DD D
Sbjct: 184 -ELIETAKKLGTKLGILYQYSDDYSD 208
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 114 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173
L A Y +G GKR RP ++ + L + ++L T A
Sbjct: 38 LIEAMRYGLLLG--GKRARPYLVYITGQMLGCEL-------------SDLDTP----ASA 78
Query: 174 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA----SL 227
E IH SL+HDD+ +DD + RRG + + A+L GD L + A LA S
Sbjct: 79 VECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSA 138
Query: 228 KNXXXXXXXXXXXXXXXXGETMQMTTSSD-----QRCSMDYYMQKTYYKTASLISNSCKA 282
+ M + + D + S++ KT +L+ + +
Sbjct: 139 AGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRL 198
Query: 283 IALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGK--GSLSDIRHVIYLS 339
AL AG+ + D Y + +GLA+Q+ DD+LD + +LGK GS ++ Y +
Sbjct: 199 GALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPA 258
Query: 340 LL 341
LL
Sbjct: 259 LL 260
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 25/191 (13%)
Query: 127 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 186
+GKRFR T+ + AL + D ALA E+ +H ASL DD
Sbjct: 48 DGKRFRGTLNMFFTVALG----GDIKDSYGGALAIEI-------------LHSASLALDD 90
Query: 187 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXG 246
++D TRRG + V GN+ + ++L+ A + + G
Sbjct: 91 IVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELEKDTSVG 150
Query: 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 306
M +SD Y++ KT SL S ++ A + D GK LG+
Sbjct: 151 ALRDMYDNSD-------YIRTIELKTGSLFKLST-VLSAYASKHYNTKQQMLDVGKYLGI 202
Query: 307 AYQLIDDVLDF 317
YQ+IDD +D+
Sbjct: 203 IYQVIDDFVDY 213
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSL-----------NFV-----MGNKLAVLAGDFLLS 218
E I +L+HDD++D +DTRRG ++ NF G +++LAGD L
Sbjct: 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALV 157
Query: 219 RA----------CVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT 268
A ALA ++ G+ + + S S++
Sbjct: 158 WAEDXLQDSGLSAEALARTRDAWRGXRTEVIG-----GQLLDIYLESHANESVELADSVN 212
Query: 269 YYKTAS-LISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327
+KTA+ I+ A +AG + ++ YG ++G+A+QL DD+L G A GK
Sbjct: 213 RFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKP 272
Query: 328 SLSDIRHVIYLSLLFIA 344
+ DIR LL +A
Sbjct: 273 AGDDIREGKRTVLLALA 289
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 94/242 (38%), Gaps = 49/242 (20%)
Query: 87 DPFSLVADELSILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 145
DP S + + + K L S V P K+ A Y G GKR RP VL + A L
Sbjct: 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRP-VLCIAACELV- 67
Query: 146 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 205
G E++LA A EMIH SL+HDD V G
Sbjct: 68 --------GGEESLAMP-------AACAVEMIHTMSLIHDD----------------VYG 96
Query: 206 NKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSD--------- 256
+AVLAGD LLS A LAS GE + +
Sbjct: 97 EDVAVLAGDALLSFAFEHLAS----ATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDI 152
Query: 257 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316
+++ +KTA+L+ S ++ G + E + + +GL +Q++DD+LD
Sbjct: 153 SNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILD 212
Query: 317 FT 318
T
Sbjct: 213 VT 214
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 171 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFL-------LSRAC 221
A E IH SL+HDD+ D RRG+ + + G A+LAGD L LS A
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129
Query: 222 VALASLKNXXXXXXXXXXXXXXXX---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 278
+ S ++ G+ + + + +D + +KT +LI
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRA 188
Query: 279 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D
Sbjct: 189 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 242
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 171 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFL-------LSRAC 221
A E IH SL+HDD+ D RRG+ + + G A+LAGD L LS A
Sbjct: 71 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 130
Query: 222 VALASLKNXXXXXXXXXXXXXXXX---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 278
+ S ++ G+ + + + +D + +KT +LI
Sbjct: 131 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRA 189
Query: 279 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D
Sbjct: 190 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 243
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 127 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 186
+GKRFR T+ + AL + D ALA E+ +H ASL D
Sbjct: 48 DGKRFRGTLNMFFTVALG----GDIKDSYGGALAIEI-------------LHSASLALCD 90
Query: 187 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXG 246
++D TRRG + V GN+ + ++L+ A + + G
Sbjct: 91 IVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVG 150
Query: 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 306
M +SD Y++ KT SL S ++ A + D GK LG+
Sbjct: 151 ALRDMYDNSD-------YIRTIELKTGSLFKLST-VLSAYASKHYNTKQQMLDVGKYLGI 202
Query: 307 AYQLIDDVLDF 317
YQ+IDD +D+
Sbjct: 203 IYQVIDDFVDY 213
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 171 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFL-------LSRAC 221
A E IH SL+HDD+ D RRG+ + + G A+LAGD L LS A
Sbjct: 94 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAN 153
Query: 222 VALASLKNXXXXXXXXXXXXXXXX---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 278
+ S ++ G+ + + + +D + +KT +LI
Sbjct: 154 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRA 212
Query: 279 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D
Sbjct: 213 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 266
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 29/215 (13%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GKR RP +++ L LH G E +H SL+HDD+
Sbjct: 85 GKRLRPFLVIESVALLGGDAEAGLHVGA-----------------ALECLHCYSLVHDDL 127
Query: 188 LDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXX 245
D RRG +++ A+LAGD LL+ A +AS N
Sbjct: 128 PAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLAR 187
Query: 246 GETMQMT--------TSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAIL 296
+ + + D + KT +L+ +C+A A++AG AE L
Sbjct: 188 AAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRL 247
Query: 297 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331
+G+ +GL++QL DD+LD T +A++GK + D
Sbjct: 248 RL-FGEKIGLSFQLADDLLDLTADAATMGKATGKD 281
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 33/237 (13%)
Query: 121 FFKMGVEG-KRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHV 179
FF+M + G KRFRP + L + AL G +D + +T IA E +H
Sbjct: 40 FFEMVLNGGKRFRPKLFLAVLCAL---------VGQKDY--SNQQTEYFKIALSIECLHT 88
Query: 180 ASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXX 237
SL+HDD+ +D+A RR +L+ AVL GD L+ L S
Sbjct: 89 YSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGD-ALNTYSFELLSNALLESHIIVE 147
Query: 238 XXXXXXXXGETMQMTTSSDQRCSMDYYMQKT-----------YYKTASLISNSCKAIALL 286
G M ++D Y + T +KTA LIS S + L+
Sbjct: 148 LIKILSANGGIKGMILGQ----ALDCYFENTPLNLEQLTFLHEHKTAKLISASL-IMGLV 202
Query: 287 AGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLL 341
A + + + +G +GL +Q++DD++D T GK + D +++LL
Sbjct: 203 ASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLL 259
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 33/237 (13%)
Query: 121 FFKMGVEG-KRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHV 179
FF+M + G KRFRP + L + AL G +D + +T IA E +H
Sbjct: 47 FFEMVLNGGKRFRPKLFLAVLCAL---------VGQKDY--SNQQTEYFKIALSIECLHT 95
Query: 180 ASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXX 237
SL+HDD+ +D+A RR +L+ AVL GD L+ L S
Sbjct: 96 YSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGD-ALNTYSFELLSNALLESHIIVE 154
Query: 238 XXXXXXXXGETMQMTTSSDQRCSMDYYMQKT-----------YYKTASLISNSCKAIALL 286
G M ++D Y + T +KTA LIS S + L+
Sbjct: 155 LIKILSANGGIKGMILGQ----ALDCYFENTPLNLEQLTFLHEHKTAKLISASL-IMGLV 209
Query: 287 AGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLL 341
A + + + +G +GL +Q++DD++D T GK + D +++LL
Sbjct: 210 ASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLL 266
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 175 EMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRA---CV--ALASL 227
E +H SL+HDD + RRG+ +++ + AVLAGD L + A C L S
Sbjct: 71 EALHAYSLVHDDXPCXDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA 130
Query: 228 KNXXXXXXXXXXXXXXXX---GETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAI 283
+N G+ + + + ++D ++ KT +LIS + +A
Sbjct: 131 ENRVALVAALAQASGAEGXVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAG 190
Query: 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK--GSLSDIRHVIYLSLL 341
A+LAG A+ L Y LGLA+Q+ DD+LD G + GK G ++ ++SLL
Sbjct: 191 AILAG--ADRGPLTA-YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL 247
Query: 342 FIAS 345
+A
Sbjct: 248 GLAG 251
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 41/254 (16%)
Query: 110 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 169
E+ +L A Y G GKR RP + AL + PE + C
Sbjct: 35 ELARLYEAXRYSVXNG--GKRVRPLLAYAACEALGGK-PEQANGAA-------------C 78
Query: 170 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVAL--A 225
E+IH SL+HDD+ D RRG + + A+LAGD L S A AL
Sbjct: 79 A---VELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDP 135
Query: 226 SLKNXXXXXXXXXXXXXXXXGETMQMTTSS-----------DQRCSMDYYMQKTYYKTAS 274
+L + DQ+ +++Y + +KT +
Sbjct: 136 ALSDASAEIRLRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQ-ALEYXHR---HKTGA 191
Query: 275 LISNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 333
LI S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK +DI
Sbjct: 192 LIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIA 251
Query: 334 H--VIYLSLLFIAS 345
Y +LL +A+
Sbjct: 252 RDKPTYPALLGLAA 265
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 41/254 (16%)
Query: 110 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 169
E+ +L A Y G GKR RP + AL + PE + C
Sbjct: 28 ELARLYEAXRYSVXNG--GKRVRPLLAYAACEALGGK-PEQANGAA-------------C 71
Query: 170 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVAL--A 225
E+IH SL+HDD+ D RRG + + A+LAGD L S A AL
Sbjct: 72 A---VELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDP 128
Query: 226 SLKNXXXXXXXXXXXXXXXXGETMQMTTSS-----------DQRCSMDYYMQKTYYKTAS 274
+L + DQ+ +++Y + +KT +
Sbjct: 129 ALSDASAEIRLRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQ-ALEYXHR---HKTGA 184
Query: 275 LISNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 333
LI S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK +DI
Sbjct: 185 LIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIA 244
Query: 334 H--VIYLSLLFIAS 345
Y +LL +A+
Sbjct: 245 RDKPTYPALLGLAA 258
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 5/166 (3%)
Query: 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227
Q I E+TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L
Sbjct: 48 QIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTL 107
Query: 228 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRC-SMDYYMQKTYYKTASLISNSCKAIALL 286
+ G+ + + + C + + Y KT L + + L
Sbjct: 108 DHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLF 167
Query: 287 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 332
+ ++ L LGL +Q+ DD + S K D+
Sbjct: 168 SDYKEDLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDL 209
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 150 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLA 209
PL G+E A A EL Q + L+HDD+ D ++ RRG +L+ + LA
Sbjct: 57 PLEAGLEAATALELF--QNWV-----------LVHDDIEDGSEERRGRPALHRLHPMPLA 103
Query: 210 VLAGDFLLSRACVALA-----SLKNXXXXXXXXXXXXXXXXGETMQM----TTSSDQRCS 260
+ AGD + + LA L G+ + + + D R
Sbjct: 104 LNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPE 163
Query: 261 MDYY---MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 317
DY+ K Y TA + ALLAG+T A + G LG A+Q++DDVL+
Sbjct: 164 -DYFRMVAHKAAYYTAV---APLRLGALLAGKTPPAAY--EEGGLRLGTAFQIVDDVLNL 217
Query: 318 TGTSASLGKGSLSDI 332
G A GK D+
Sbjct: 218 EGGEA-YGKERAGDL 231
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 88/221 (39%), Gaps = 33/221 (14%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GKR RP LL AT + V L DG A+ E IHV SL+HDD+
Sbjct: 50 GKRMRP--LLTYATGQTIGVAADLLDGPACAV---------------EFIHVYSLIHDDL 92
Query: 188 LDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX----------X 235
D RRG + + A+LAGD L + A LA +
Sbjct: 93 PAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLA 152
Query: 236 XXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA--GQTAEV 293
G+ + + S ++ + KT +LI S + +A LA G AE
Sbjct: 153 KASGPAGMVGGQAIDL-ASVGKKLDLPGLENMHIRKTGALIRASVR-LACLARPGLPAEQ 210
Query: 294 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
Y K +GLA+Q+ DD+LD + +LGK D H
Sbjct: 211 FDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDH 251
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GK FR +++ + +N+ +D LA +++I E++H +SLL DD+
Sbjct: 40 GKNFRLNLIVQINRVMNLP---------KDQLA--------IVSQIVELLHNSSLLIDDI 82
Query: 188 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227
D+A RRG + + + G + +++ RA ++ L
Sbjct: 83 EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQL 122
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 150 PLHDGVEDALATELRT-RQQCI-AEITEMIHVASLLHDDVLDDADTRRG 196
P ++G ED A R C+ + E + L+ DD++D++ TRRG
Sbjct: 112 PNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRG 160
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 150 PLHDGVEDALATELRT-RQQCI-AEITEMIHVASLLHDDVLDDADTRRG 196
P ++G ED A R C+ + E + L+ DD++D++ TRRG
Sbjct: 89 PNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRG 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,249,924
Number of Sequences: 62578
Number of extensions: 277770
Number of successful extensions: 826
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 83
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)