Query 018980
Match_columns 348
No_of_seqs 201 out of 1548
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 1E-62 3.4E-67 480.3 27.4 244 85-347 24-267 (345)
2 3apz_A Geranyl diphosphate syn 100.0 3.5E-63 1.2E-67 484.6 19.2 263 85-347 7-269 (348)
3 3mzv_A Decaprenyl diphosphate 100.0 1.5E-61 5.1E-66 471.7 26.4 244 85-347 11-255 (341)
4 3pko_A Geranylgeranyl pyrophos 100.0 7.8E-62 2.7E-66 472.6 22.2 245 85-347 14-259 (334)
5 3aqb_B Component B of hexapren 100.0 8.3E-61 2.8E-65 463.9 23.5 243 86-347 4-246 (325)
6 1wy0_A Geranylgeranyl pyrophos 100.0 8.7E-61 3E-65 466.7 22.5 242 87-347 6-253 (342)
7 3rmg_A Octaprenyl-diphosphate 100.0 1.1E-60 3.7E-65 464.5 22.5 241 87-347 8-248 (334)
8 3nf2_A Putative polyprenyl syn 100.0 2.7E-60 9.2E-65 464.5 23.7 241 90-347 7-259 (352)
9 3lmd_A Geranylgeranyl pyrophos 100.0 5.3E-60 1.8E-64 463.2 22.5 240 88-347 36-275 (360)
10 1v4e_A Octoprenyl-diphosphate 100.0 7E-60 2.4E-64 452.5 19.3 230 92-347 9-238 (299)
11 3uca_A Geranyltranstransferase 100.0 1.7E-59 5.7E-64 453.6 21.0 244 85-347 30-286 (324)
12 4dhd_A Polyprenyl synthetase; 100.0 6.3E-59 2.1E-63 455.9 24.2 243 86-347 3-261 (358)
13 3pde_A Farnesyl-diphosphate sy 100.0 5E-59 1.7E-63 447.6 22.3 238 90-347 10-260 (309)
14 3p8l_A Geranyltranstransferase 100.0 1.4E-58 4.6E-63 443.7 24.8 236 93-347 15-261 (302)
15 4f62_A Geranyltranstransferase 100.0 2.1E-58 7.1E-63 444.8 25.5 242 86-347 3-257 (317)
16 3ts7_A Geranyltranstransferase 100.0 9.4E-59 3.2E-63 448.3 22.3 242 86-347 7-264 (324)
17 2h8o_A Geranyltranstransferase 100.0 8.8E-59 3E-63 450.8 21.6 238 90-347 41-297 (335)
18 1rqj_A Geranyltranstransferase 100.0 6.8E-59 2.3E-63 445.8 20.5 238 90-347 5-258 (299)
19 3lsn_A Geranyltranstransferase 100.0 1.1E-58 3.7E-63 444.8 21.4 239 89-347 4-258 (304)
20 1wmw_A Geranylgeranyl diphosph 100.0 1.2E-58 4.3E-63 449.5 21.1 233 93-347 6-246 (330)
21 3p8r_A Geranyltranstransferase 100.0 3.2E-58 1.1E-62 441.3 20.6 237 91-347 12-264 (302)
22 1rtr_A Geranyltranstransferase 100.0 2E-58 6.7E-63 442.8 19.0 233 95-347 9-253 (301)
23 3m0g_A Farnesyl diphosphate sy 100.0 6.8E-58 2.3E-62 438.1 19.6 235 90-347 5-251 (297)
24 2e8v_A Geranylgeranyl pyrophos 100.0 4.6E-58 1.6E-62 447.2 18.1 229 99-347 10-249 (340)
25 3lom_A Geranyltranstransferase 100.0 1.7E-57 5.9E-62 438.0 21.7 238 90-347 11-265 (313)
26 3lk5_A Geranylgeranyl pyrophos 100.0 9.6E-57 3.3E-61 443.3 23.2 247 88-347 21-292 (380)
27 2q80_A Geranylgeranyl pyrophos 100.0 1.2E-57 4E-62 437.5 14.5 222 103-347 2-224 (301)
28 2ftz_A Geranyltranstransferase 100.0 8.6E-57 2.9E-61 428.0 19.9 227 97-347 16-246 (284)
29 3tc1_A Octaprenyl pyrophosphat 100.0 1.7E-56 5.8E-61 431.7 20.5 229 96-347 6-235 (315)
30 3llw_A Geranyltranstransferase 100.0 3.2E-56 1.1E-60 428.9 19.0 233 99-347 18-263 (311)
31 3npk_A Geranyltranstransferase 100.0 7.8E-56 2.7E-60 422.6 19.8 230 97-347 7-248 (291)
32 3mav_A Farnesyl pyrophosphate 100.0 3.2E-55 1.1E-59 434.9 22.6 220 113-347 67-320 (395)
33 3ipi_A Geranyltranstransferase 100.0 2.5E-55 8.5E-60 419.9 19.6 224 96-346 11-235 (295)
34 1yhl_A Farnesyl pyrophosphate 100.0 6.7E-55 2.3E-59 428.2 20.8 226 112-347 34-284 (362)
35 2qis_A Farnesyl pyrophosphate 100.0 9.8E-55 3.3E-59 428.5 21.7 222 112-347 64-298 (374)
36 1uby_A FPS, farnesyl diphospha 100.0 2.3E-54 8E-59 424.8 22.1 222 112-347 57-291 (367)
37 2ihi_A Pyrophosphate synthase; 100.0 2.6E-54 9E-59 427.6 21.2 245 85-347 36-320 (395)
38 3dyh_A Farnesyl pyrophosphate 100.0 2.6E-54 8.8E-59 427.4 19.5 254 85-347 22-312 (390)
39 2q58_A Fragment, farnesyl pyro 100.0 8.6E-55 2.9E-59 428.2 10.2 214 113-347 59-284 (368)
40 2azj_A Geranylgeranyl pyrophos 100.0 3.1E-53 1.1E-57 404.5 19.6 217 91-343 14-232 (289)
41 2her_A Fragment, farnesyl pyro 100.0 7.2E-55 2.5E-59 427.5 7.9 239 85-347 28-284 (368)
42 2j1p_A Geranylgeranyl pyrophos 100.0 3.3E-52 1.1E-56 398.3 21.6 228 87-347 12-254 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 3.7E-53 1.3E-57 402.1 14.5 220 88-335 6-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 3.5E-47 1.2E-51 360.3 24.8 202 93-314 6-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 9.2E-47 3.1E-51 357.3 23.4 198 97-316 15-224 (273)
46 4hd1_A Squalene synthase HPNC; 94.7 0.67 2.3E-05 43.3 14.4 70 240-318 106-175 (294)
47 3vj8_A Squalene synthase; farn 94.0 0.97 3.3E-05 43.3 14.2 82 232-317 112-193 (343)
48 3acx_A Dehydrosqualene synthas 88.6 1.2 4.2E-05 41.4 8.0 83 240-341 110-192 (293)
49 3aqb_A Component A of hexapren 83.0 1.5 5.1E-05 36.6 4.8 64 175-252 52-115 (147)
50 3kb9_A EPI-isozizaene synthase 70.9 60 0.0021 30.8 13.2 88 229-318 175-267 (382)
51 3uca_A Geranyltranstransferase 61.8 17 0.00057 34.4 7.0 72 168-239 234-318 (324)
52 1ps1_A Pentalenene synthase; a 58.5 1.1E+02 0.0038 27.9 12.2 95 223-318 126-225 (337)
53 4f62_A Geranyltranstransferase 56.5 23 0.00078 33.4 6.9 61 168-228 205-277 (317)
54 3p8l_A Geranyltranstransferase 54.9 20 0.00069 33.4 6.2 60 168-227 209-280 (302)
55 3lsn_A Geranyltranstransferase 53.4 16 0.00056 34.1 5.3 79 168-246 206-298 (304)
56 1rtr_A Geranyltranstransferase 50.9 24 0.00081 32.8 6.0 61 168-228 201-273 (301)
57 3ts7_A Geranyltranstransferase 49.7 31 0.0011 32.5 6.7 61 169-229 213-285 (324)
58 3m0g_A Farnesyl diphosphate sy 48.2 42 0.0014 31.1 7.2 69 170-238 201-282 (297)
59 3rmg_A Octaprenyl-diphosphate 47.8 28 0.00096 32.8 6.1 49 284-344 59-107 (334)
60 2h8o_A Geranyltranstransferase 47.6 24 0.00084 33.4 5.6 61 168-228 245-317 (335)
61 3lom_A Geranyltranstransferase 45.8 28 0.00096 32.6 5.6 71 169-239 214-297 (313)
62 3p8r_A Geranyltranstransferase 43.8 31 0.0011 32.1 5.6 69 170-238 214-295 (302)
63 1di1_A Aristolochene synthase; 43.1 1.5E+02 0.0051 26.4 10.1 65 257-321 150-214 (300)
64 3v1v_A 2-MIB synthase, 2-methy 37.5 75 0.0025 31.1 7.5 95 222-319 246-345 (433)
65 2q80_A Geranylgeranyl pyrophos 36.5 47 0.0016 30.8 5.6 32 285-316 38-69 (301)
66 3mzv_A Decaprenyl diphosphate 35.7 32 0.0011 32.5 4.4 37 280-316 61-97 (341)
67 4fp4_A Polyprenyl synthetase; 34.8 43 0.0015 31.0 5.0 36 290-327 66-101 (285)
68 3bny_A Aristolochene synthase; 33.5 2.3E+02 0.008 25.4 9.9 64 256-319 163-226 (320)
69 3m00_A Aristolochene synthase; 33.3 3E+02 0.01 27.7 11.3 87 229-318 360-452 (550)
70 3pde_A Farnesyl-diphosphate sy 32.4 68 0.0023 29.9 6.0 58 169-226 209-278 (309)
71 3llw_A Geranyltranstransferase 31.7 1.2E+02 0.0041 28.2 7.6 58 169-226 214-281 (311)
72 1wmw_A Geranylgeranyl diphosph 30.6 58 0.002 30.5 5.2 35 282-316 49-83 (330)
73 2azj_A Geranylgeranyl pyrophos 30.3 49 0.0017 30.5 4.5 34 283-316 60-93 (289)
74 3ipi_A Geranyltranstransferase 30.0 86 0.0029 29.0 6.2 61 169-229 191-265 (295)
75 2e8v_A Geranylgeranyl pyrophos 29.7 59 0.002 30.6 5.1 32 285-316 53-84 (340)
76 1v4e_A Octoprenyl-diphosphate 28.3 67 0.0023 29.7 5.1 27 290-316 59-85 (299)
77 3n0f_A Isoprene synthase; terp 28.2 3E+02 0.01 27.8 10.3 87 231-318 364-455 (555)
78 3nf2_A Putative polyprenyl syn 28.2 41 0.0014 32.0 3.7 35 282-316 64-98 (352)
79 4dhd_A Polyprenyl synthetase; 27.1 37 0.0013 32.4 3.1 27 290-316 63-89 (358)
80 3g4d_A (+)-delta-cadinene synt 26.6 2.8E+02 0.0097 27.9 9.8 90 229-321 364-460 (554)
81 3pko_A Geranylgeranyl pyrophos 25.5 70 0.0024 30.1 4.7 31 286-316 69-100 (334)
82 3lmd_A Geranylgeranyl pyrophos 25.1 58 0.002 31.1 4.1 49 283-343 85-134 (360)
83 2ftz_A Geranyltranstransferase 24.5 1E+02 0.0035 28.2 5.6 33 284-316 58-92 (284)
84 3lk5_A Geranylgeranyl pyrophos 23.6 92 0.0031 29.9 5.3 41 291-343 87-127 (380)
85 3aqb_B Component B of hexapren 23.2 48 0.0016 31.0 3.1 34 283-316 55-88 (325)
86 1rqj_A Geranyltranstransferase 23.1 99 0.0034 28.4 5.2 35 282-316 54-90 (299)
87 1wy0_A Geranylgeranyl pyrophos 22.8 48 0.0016 31.2 3.0 40 286-327 60-99 (342)
88 2j1p_A Geranylgeranyl pyrophos 21.4 1.1E+02 0.0039 28.0 5.2 33 284-316 64-98 (293)
89 3oyr_A Trans-isoprenyl diphosp 20.4 47 0.0016 31.5 2.4 47 280-328 73-119 (345)
90 2ong_A 4S-limonene synthase; m 20.1 5.6E+02 0.019 25.5 10.5 87 231-318 355-446 (543)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1e-62 Score=480.34 Aligned_cols=244 Identities=30% Similarity=0.421 Sum_probs=204.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 018980 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~ 164 (348)
..+.+.++++|++.|++.|++.+.+.+|.+.++.+|.+.. ||||+||.|++++++++|++.+
T Consensus 24 ~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~--gGKrlRp~l~ll~~~~~g~~~~---------------- 85 (345)
T 3oyr_A 24 VDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAA--GGKRLRPLMTVAAARLAGADND---------------- 85 (345)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTT--TCCCHHHHHHHHHHHHTTCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHH----------------
Confidence 4556788999999999999999999999999999999984 4999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 018980 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 244 (348)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~ 244 (348)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..++
T Consensus 86 -~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~ 164 (345)
T 3oyr_A 86 -HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIA 164 (345)
T ss_dssp -THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc
Q 018980 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (348)
Q Consensus 245 ~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 324 (348)
.||.+|+.+..+...++++|++++++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|++++++.+
T Consensus 165 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~ 244 (345)
T 3oyr_A 165 EGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETL 244 (345)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhc
Confidence 99999999887777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhcCcchHHHHHHHhh
Q 018980 325 GKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 325 GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|||.|+||++||+|||++++++.
T Consensus 245 GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 245 GKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp ------------CCHHHHHHHHH
T ss_pred CCCccchhhcCchHHHHHHHHHh
Confidence 99999999999999999999964
No 2
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=3.5e-63 Score=484.64 Aligned_cols=263 Identities=78% Similarity=1.119 Sum_probs=206.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 018980 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~ 164 (348)
..++|..+.+|++.+++.|++.+.+..|.+.++..|++..|.+|||+||.|++++++++|++.+.+...+..++++.++.
T Consensus 7 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (348)
T 3apz_A 7 ELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELR 86 (348)
T ss_dssp -CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchh
Confidence 67789999999999999999999999999999999999754459999999999999999875332211111122234455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 018980 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 244 (348)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~ 244 (348)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..++
T Consensus 87 ~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 166 (348)
T 3apz_A 87 VRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV 166 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc
Q 018980 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (348)
Q Consensus 245 ~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 324 (348)
.||.+|+.+..+...++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++|+++.+
T Consensus 167 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~ 246 (348)
T 3apz_A 167 TGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASL 246 (348)
T ss_dssp HHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhc
Confidence 99999998765556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhcCcchHHHHHHHhh
Q 018980 325 GKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 325 GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|||.|+||++||+|||+++|++.
T Consensus 247 GK~~g~Dl~egK~Tlp~l~al~~ 269 (348)
T 3apz_A 247 GKGSLSDIRHGVITAPILFAMEE 269 (348)
T ss_dssp TCSCCHHHHTTCCCHHHHHHHHH
T ss_pred CCcchhhHhCCChhHHHHHHHHc
Confidence 99999999999999999999863
No 3
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.5e-61 Score=471.66 Aligned_cols=244 Identities=30% Similarity=0.504 Sum_probs=216.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 018980 85 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~ 163 (348)
..+.+.+++++++.|++.|++.+... +|.+.++..|++..| |||+||.|++++++++|++.+
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~--------------- 73 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP--------------- 73 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 44557889999999999999999988 899999999999854 999999999999999998653
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 018980 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 243 (348)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l 243 (348)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..+
T Consensus 74 --~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 151 (341)
T 3mzv_A 74 --FHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVI 151 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccc
Q 018980 244 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 323 (348)
Q Consensus 244 ~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 323 (348)
+.||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.
T Consensus 152 ~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~ 231 (341)
T 3mzv_A 152 AEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAE 231 (341)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999988777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHhcCcchHHHHHHHhh
Q 018980 324 LGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 324 ~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+||+.|+||++||+|||+++|++.
T Consensus 232 ~GK~~g~Dl~egK~Tlp~i~al~~ 255 (341)
T 3mzv_A 232 IGKNTGDDFRERKLTMPVIKAVAL 255 (341)
T ss_dssp ----CCHHHHTTCCCHHHHHHHHT
T ss_pred cCCCCCcccccCchhHHHHHHHHh
Confidence 999999999999999999999874
No 4
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=7.8e-62 Score=472.57 Aligned_cols=245 Identities=29% Similarity=0.432 Sum_probs=231.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 018980 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~ 164 (348)
.|++|+.+.+|++.|++.|++.+....|.+.++..|++..| |||+||.|++++++ +|+... .
T Consensus 14 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~ 75 (334)
T 3pko_A 14 LWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------P 75 (334)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------H
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------H
Confidence 79999999999999999999999999999999999999855 99999999999999 665211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Q 018980 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHL 243 (348)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~~la~~i~~l 243 (348)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+ +++++.+++++..+
T Consensus 76 ~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 155 (334)
T 3pko_A 76 AQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRI 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999988765 88999999999999
Q ss_pred HHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccc
Q 018980 244 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 323 (348)
Q Consensus 244 ~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 323 (348)
+.||.+|+....+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.
T Consensus 156 ~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~ 235 (334)
T 3pko_A 156 LQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKR 235 (334)
T ss_dssp HHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999887777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHhcCcchHHHHHHHhh
Q 018980 324 LGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 324 ~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+|||.|+||++||+|||+++|++.
T Consensus 236 ~GK~~g~Dl~egK~Tlp~i~al~~ 259 (334)
T 3pko_A 236 TQKPVLEDLRSGVYSLPLLLSLSH 259 (334)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHGGG
T ss_pred cCCCCCCccccCchhHHHHHHHHh
Confidence 999999999999999999999974
No 5
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=8.3e-61 Score=463.95 Aligned_cols=243 Identities=30% Similarity=0.415 Sum_probs=229.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 018980 86 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (348)
Q Consensus 86 ~d~~~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~ 165 (348)
+..+..+++|++.+++.|.+.+....|.+.++.+|++.. ||||+||.+++++++++|++. +
T Consensus 4 l~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~--gGKr~Rp~l~l~~~~~~g~~~-----------------~ 64 (325)
T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSS--GGKRVRPMFVLLSGFLNDTQK-----------------D 64 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHS--CCCCHHHHHHHHHHTTSSCCC-----------------H
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCh-----------------H
Confidence 345677899999999999999988889999999999985 499999999999999998742 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 018980 166 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 245 (348)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~ 245 (348)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..++.
T Consensus 65 ~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 144 (325)
T 3aqb_B 65 DLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCF 144 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccC
Q 018980 246 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 325 (348)
Q Consensus 246 GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~G 325 (348)
||.+|+.+..+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 145 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 224 (325)
T 3aqb_B 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224 (325)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcC
Confidence 99999998777678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhcCcchHHHHHHHhh
Q 018980 326 KGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 326 K~~~~Dl~~gk~T~pvl~ale~ 347 (348)
||.++||++||+|||++++++.
T Consensus 225 K~~g~Dl~~gk~T~p~i~al~~ 246 (325)
T 3aqb_B 225 KPVGSDIRNGHITYPLMAAIAN 246 (325)
T ss_dssp SCTTHHHHTTCCCHHHHHHHHH
T ss_pred CccchHhhCCCccHHHHHHHHh
Confidence 9999999999999999999874
No 6
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.7e-61 Score=466.74 Aligned_cols=242 Identities=29% Similarity=0.409 Sum_probs=226.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 018980 87 DPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (348)
Q Consensus 87 d~~~~l~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~ 165 (348)
+.+..++++++.+++.|++.+... ++.+.++..|++..| |||+||.|++++++++|++.+
T Consensus 6 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------- 66 (342)
T 1wy0_A 6 ELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDPL----------------- 66 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCGG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHH-----------------
Confidence 346678899999999999999877 789999999998854 999999999999999986432
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHH
Q 018980 166 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVV 240 (348)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l-----~~~~v~~~la~~i 240 (348)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++. .+.++++.+++++
T Consensus 67 ~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 146 (342)
T 1wy0_A 67 RAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKAS 146 (342)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999987 4567999999999
Q ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 018980 241 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 320 (348)
Q Consensus 241 ~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~ 320 (348)
..++.||.+|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++|+
T Consensus 147 ~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d 226 (342)
T 1wy0_A 147 NELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIAD 226 (342)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999988776789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 321 SASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 321 ~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
++.+|||.|+||++||+|||++++++.
T Consensus 227 ~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 227 EKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred hhhhCCCchhHHhCCCCcHHHHHHHHh
Confidence 999999999999999999999999974
No 7
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-60 Score=464.51 Aligned_cols=241 Identities=29% Similarity=0.385 Sum_probs=205.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 018980 87 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (348)
Q Consensus 87 d~~~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~ 166 (348)
+.+..+++||+.+++.|++.+.+.+|.+.++.+|.+.. ||||+||.|++++++++|++.+ .
T Consensus 8 ~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~l~l~~~~~~g~~~~-----------------~ 68 (334)
T 3rmg_A 8 LIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKR--NGKMMRPILVLLVARLYGAVTP-----------------A 68 (334)
T ss_dssp HHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCChH-----------------H
Confidence 34678899999999999999999999999999999874 5999999999999999987532 6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 018980 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 246 (348)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~G 246 (348)
+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++...+.++++.+++++..++.|
T Consensus 69 ~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 148 (334)
T 3rmg_A 69 TLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEG 148 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCC
Q 018980 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 326 (348)
Q Consensus 247 Q~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 326 (348)
|.+|+.+..+...++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++ +++.+||
T Consensus 149 Q~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK 227 (334)
T 3rmg_A 149 ELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGK 227 (334)
T ss_dssp HHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC-----
T ss_pred HHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCC
Confidence 999999887777899999999999999999999999999999999999999999999999999999999999 5788999
Q ss_pred CchhHHhcCcchHHHHHHHhh
Q 018980 327 GSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 327 ~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|.|+||++||+|||+++|++.
T Consensus 228 ~~g~Dl~egK~T~p~i~al~~ 248 (334)
T 3rmg_A 228 PTGNDMLEGKLTLPALYALNT 248 (334)
T ss_dssp -CCHHHHTTCCCHHHHHHHHH
T ss_pred CchhhhhcCchHHHHHHHHHh
Confidence 999999999999999999974
No 8
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=2.7e-60 Score=464.51 Aligned_cols=241 Identities=27% Similarity=0.351 Sum_probs=224.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHh---------cCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHh
Q 018980 90 SLVADELSILAKRLRSMVVAEVPKLASAAEYFFK---------MGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 160 (348)
Q Consensus 90 ~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~---------~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~ 160 (348)
..+..-...++..|++.+.+.+|.+.+++.|.+. ...||||+||.|++++++++|++.+
T Consensus 7 ~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~------------ 74 (352)
T 3nf2_A 7 ALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPE------------ 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGG------------
T ss_pred HHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHH------------
Confidence 3556666779999999999999999999999982 1246999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCH---HHHHHHH
Q 018980 161 TELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVTLLA 237 (348)
Q Consensus 161 ~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~---~v~~~la 237 (348)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++ ++++.++
T Consensus 75 -----~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~ 149 (352)
T 3nf2_A 75 -----VGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLT 149 (352)
T ss_dssp -----GGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999998876 7899999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018980 238 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 317 (348)
Q Consensus 238 ~~i~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~ 317 (348)
+++..++.||++|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||+++|+||||+||++|+
T Consensus 150 ~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~ 229 (352)
T 3nf2_A 150 KASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGI 229 (352)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988777889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 318 TGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 318 ~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+|+++.+|||.++||++||+|||+++|++.
T Consensus 230 ~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 230 WGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred cCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 999999999999999999999999999974
No 9
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=5.3e-60 Score=463.17 Aligned_cols=240 Identities=27% Similarity=0.371 Sum_probs=206.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 018980 88 PFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (348)
Q Consensus 88 ~~~~l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~ 167 (348)
.+..++++++.|++.|++.+....|.+.++..|++.. +|||+||.|++++++++|.... +.+
T Consensus 36 ~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~ll~~~~~~~~~~----------------~~~ 97 (360)
T 3lmd_A 36 LTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRA--GGKRFRPMFALLASEFGEKPLS----------------ENV 97 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCC--CSCCHHHHHHHHHHTTSSSTTC----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHhCCCCh----------------HHH
Confidence 4678999999999999999999999999999999874 5999999999999998873221 267
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q 018980 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 247 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ 247 (348)
..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++.. +++++.+++++..++.||
T Consensus 98 ~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ 176 (360)
T 3lmd_A 98 IKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQ 176 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998875 589999999999999999
Q ss_pred HHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCC
Q 018980 248 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327 (348)
Q Consensus 248 ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~ 327 (348)
.+|+.+..+. .++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+
T Consensus 177 ~ldl~~~~~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~ 255 (360)
T 3lmd_A 177 MRETVGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKT 255 (360)
T ss_dssp HHHHHCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHhccCCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCC
Confidence 9999987765 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhcCcchHHHHHHHhh
Q 018980 328 SLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 328 ~~~Dl~~gk~T~pvl~ale~ 347 (348)
.++||++||+|||+++|++.
T Consensus 256 ~g~Dl~egK~Tlp~l~al~~ 275 (360)
T 3lmd_A 256 PGTDLREGVFTLPVLYALRE 275 (360)
T ss_dssp CCHHHHHTCCCHHHHHHHHC
T ss_pred chhHHhcCCchHHHHHHHHc
Confidence 99999999999999999863
No 10
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=7e-60 Score=452.49 Aligned_cols=230 Identities=26% Similarity=0.397 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHH
Q 018980 92 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171 (348)
Q Consensus 92 l~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA 171 (348)
+.+|++.+++.|++.+....| ++..|++.. ||||+||.|++++++++|++.. +.+..+|
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~--gGKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A 67 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPL--YGKMLRVRLSILSFKNRGVEIG----------------EDAISSL 67 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCC--CCCCHHHHHHHHHHHHHTCCCC----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhC--CCCcHHHHHHHHHHHHcCCCCh----------------hHHHHHH
Confidence 577899999999998877666 888998874 5999999999999999987211 2577899
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhc
Q 018980 172 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 251 (348)
Q Consensus 172 ~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ~ldl 251 (348)
+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..++.||.+|+
T Consensus 68 ~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl 147 (299)
T 1v4e_A 68 AALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQ 147 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhH
Q 018980 252 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331 (348)
Q Consensus 252 ~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~D 331 (348)
.+..+. .++++|++++++|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.++|
T Consensus 148 ~~~~~~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~D 222 (299)
T 1v4e_A 148 LSRYKP-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLD 222 (299)
T ss_dssp HHTTSC-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCC
T ss_pred HccCCC-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchH
Confidence 887765 899999999999999999999999999999877 78999999999999999999999999 9999999999
Q ss_pred HhcCcchHHHHHHHhh
Q 018980 332 IRHVIYLSLLFIASEI 347 (348)
Q Consensus 332 l~~gk~T~pvl~ale~ 347 (348)
|++||+|||++++++.
T Consensus 223 l~egK~T~p~l~al~~ 238 (299)
T 1v4e_A 223 LKNGVASFPLVTAMEK 238 (299)
T ss_dssp CTTTTCCHHHHHHHHH
T ss_pred hhCCCchHHHHHHHHh
Confidence 9999999999999975
No 11
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.7e-59 Score=453.58 Aligned_cols=244 Identities=27% Similarity=0.352 Sum_probs=205.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 018980 85 QLDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 161 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~ 161 (348)
..+.+..++++++.|++.|.+.+... .+.+.++.+|.+..| |||+||.|++++++++|++.+
T Consensus 30 ~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~------------- 94 (324)
T 3uca_A 30 LEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK------------- 94 (324)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-------------
Confidence 45566788999999999999999865 788999999999855 999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC--C----HHHH
Q 018980 162 ELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVV 233 (348)
Q Consensus 162 ~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~--~----~~v~ 233 (348)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++.. + .+++
T Consensus 95 ----~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i 170 (324)
T 3uca_A 95 ----KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKAT 170 (324)
T ss_dssp ----GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 5678999999999999999999 99999999999999999999999999999999999887643 1 4677
Q ss_pred HHHHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Q 018980 234 TLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 311 (348)
Q Consensus 234 ~~la~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~ 311 (348)
+.++++. ..++.||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||+++|+||||+
T Consensus 171 ~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~ 250 (324)
T 3uca_A 171 KIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIK 250 (324)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 68999999999988766789999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 312 DDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 312 DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
||++|++++++.+||+.++|+++||+|||+++++++
T Consensus 251 DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~ 286 (324)
T 3uca_A 251 DDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEE 286 (324)
T ss_dssp HHHHHHCCC-----------------CHHHHHCHHH
T ss_pred HHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHH
Confidence 999999999999999999999999999999999874
No 12
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=6.3e-59 Score=455.89 Aligned_cols=243 Identities=27% Similarity=0.357 Sum_probs=216.0
Q ss_pred CCchh-HHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 018980 86 LDPFS-LVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (348)
Q Consensus 86 ~d~~~-~l~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~ 163 (348)
+|.+. +++..+..|++.|++.+... ++.+.+++.|.+.. ||||+||.|++++++++|++.+
T Consensus 3 m~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~--------------- 65 (358)
T 4dhd_A 3 MDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKT--GGKRLRPLLTLAAAEAVSGQWR--------------- 65 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSS--CCCCHHHHHHHHHHHHHHSCCG---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHH---------------
Confidence 34443 45567788999999999887 78999999999874 5999999999999999988543
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 018980 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEH 242 (348)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~~la~~i~~ 242 (348)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++.... .++++.+++++..
T Consensus 66 --~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 143 (358)
T 4dhd_A 66 --PALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKA 143 (358)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999876554 5899999999999
Q ss_pred HHHHHHHhcccc-----------CCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 018980 243 LVTGETMQMTTS-----------SDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 310 (348)
Q Consensus 243 l~~GQ~ldl~~~-----------~~~-~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI 310 (348)
++.||.+|+.+. .+. ..++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||
T Consensus 144 ~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 223 (358)
T 4dhd_A 144 IDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQI 223 (358)
T ss_dssp HHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 344 67999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCccccCCCchhHHhcCcc-hHHHHHHHhh
Q 018980 311 IDDVLDFTGTSASLGKGSLSDIRHVIY-LSLLFIASEI 347 (348)
Q Consensus 311 ~DDllD~~g~~~~~GK~~~~Dl~~gk~-T~pvl~ale~ 347 (348)
+||++|++|+++.+|||.|+||++||+ |||+++|++.
T Consensus 224 ~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 224 IDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp HHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred HHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 999999999999999999999999999 9999999985
No 13
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=5e-59 Score=447.64 Aligned_cols=238 Identities=25% Similarity=0.317 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 018980 90 SLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (348)
Q Consensus 90 ~~l~~eL~~v~~~l~~~~~~~--~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~ 167 (348)
..+++.+..|++.|.+.+... .+.+.++.+|.+..| |||+||.|++++++++|++.+ .+
T Consensus 10 ~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~ 70 (309)
T 3pde_A 10 AFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------PE 70 (309)
T ss_dssp HHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------HH
Confidence 457778888999998888765 678999999999854 999999999999999998654 45
Q ss_pred --HHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHH
Q 018980 168 --QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLAT 238 (348)
Q Consensus 168 --~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-----~~v~~~la~ 238 (348)
..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||+|++.|+..+++... .++++.+++
T Consensus 71 ~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~ 150 (309)
T 3pde_A 71 RHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALAT 150 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 78999999999999999999 999999999999999999999999999999999999987642 257888888
Q ss_pred HH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 239 VV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 239 ~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
++ ..++.||.+|+.+... ..++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|
T Consensus 151 a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 151 AAGPSGMVAGQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp HHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHhHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 6899999999988654 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 317 FTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 317 ~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
++|+++.+||++++|+++||+|||+++++++
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~ 260 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKNTYPGKLGLIG 260 (309)
T ss_dssp HHCC-----------CTTTSSSHHHHHCHHH
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999975
No 14
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-58 Score=443.69 Aligned_cols=236 Identities=31% Similarity=0.365 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHhhh--cchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHH
Q 018980 93 ADELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 170 (348)
Q Consensus 93 ~~eL~~v~~~l~~~~~~--~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (348)
++++..|++.|.+.+.. ..+.+.++.+|.+.. ||||+||.|++++++++|++.+ +.+..+
T Consensus 15 ~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~----------------~~~~~~ 76 (302)
T 3p8l_A 15 QQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHA--GGKRLRPLLVLTTVAAFQKEME----------------TQDYQV 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHTTCCCC----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCcc----------------HHHHHH
Confidence 35667788888888875 367899999999985 4999999999999999987643 257789
Q ss_pred HHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHHH--H
Q 018980 171 AEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--E 241 (348)
Q Consensus 171 A~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-----~~v~~~la~~i--~ 241 (348)
|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++... .++++.+++++ .
T Consensus 77 A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~ 156 (302)
T 3p8l_A 77 AASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQ 156 (302)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhh
Confidence 99999999999999999 999999999999999999999999999999999999987532 25778888887 7
Q ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 018980 242 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 321 (348)
Q Consensus 242 ~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~ 321 (348)
.++.||.+|+.+... ..++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++|++
T Consensus 157 ~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 157 GMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp THHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 899999999988654 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhHHhcCcchHHHHHHHhh
Q 018980 322 ASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 322 ~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+.+||+.++|+++||+|||++++++.
T Consensus 236 ~~~GK~~g~Dl~egK~T~p~l~~l~~ 261 (302)
T 3p8l_A 236 ADLGKKVGRDEALNKSTYPALLGIAG 261 (302)
T ss_dssp ---------------CCHHHHHCHHH
T ss_pred HHhCCChhhHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999874
No 15
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=2.1e-58 Score=444.76 Aligned_cols=242 Identities=25% Similarity=0.314 Sum_probs=196.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 018980 86 LDPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (348)
Q Consensus 86 ~d~~~~l~~eL~~v~~~l~~~~~~~--~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~ 163 (348)
++....+.+....|++.|.+.+... ++.+.++.+|.+.. ||||+||.|++++++++|++.+
T Consensus 3 m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~--gGKrlRp~Lvl~~~~~~g~~~~--------------- 65 (317)
T 4f62_A 3 MNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFN--GGKRIRPMLTYASAQLVGDISS--------------- 65 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHSCCCH---------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhC--CCcchHHHHHHHHHHHhCCCHH---------------
Confidence 3444567778888999999988764 67899999999974 4999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC------HHHHHH
Q 018980 164 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTL 235 (348)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~------~~v~~~ 235 (348)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++..+ .++++.
T Consensus 66 --~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~ 143 (317)
T 4f62_A 66 --LTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQE 143 (317)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 6788999999999999999999 999999999999999999999999999999999999987632 246778
Q ss_pred HHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHH
Q 018980 236 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLID 312 (348)
Q Consensus 236 la~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag-~~~e~~~~l~~~G~~lGiAFQI~D 312 (348)
+++++ ..++.||.+|+.+... ..++++|++|+++|||+||+++|++|++++| ++++..+.+++||+++|+||||+|
T Consensus 144 la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~D 222 (317)
T 4f62_A 144 LVVASGRNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQD 222 (317)
T ss_dssp HHHHHSTTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 4799999999988754 5899999999999999999999999999999 899999999999999999999999
Q ss_pred hhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 313 DVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 313 DllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|++|++|+++.+||+.|+|+++||+|||++++++.
T Consensus 223 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~ 257 (317)
T 4f62_A 223 DIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDG 257 (317)
T ss_dssp HHHHTC----------------CCCCHHHHHHHHH
T ss_pred HHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 16
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=9.4e-59 Score=448.35 Aligned_cols=242 Identities=26% Similarity=0.293 Sum_probs=206.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 018980 86 LDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 162 (348)
Q Consensus 86 ~d~~~~l~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~ 162 (348)
++....+.+....|++.|.+.+... ++.+.++.+|.+..| |||+||.|++++++++|++.+
T Consensus 7 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-------------- 70 (324)
T 3ts7_A 7 RSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD-------------- 70 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH--------------
Confidence 3444567888889999999988753 578999999999855 999999999999999988643
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC--C------HHH
Q 018980 163 LRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEV 232 (348)
Q Consensus 163 ~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~--~------~~v 232 (348)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++|++.+++.. + .++
T Consensus 71 ---~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~ 147 (324)
T 3ts7_A 71 ---LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAM 147 (324)
T ss_dssp ---GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 5678999999999999999999 99999999999999999999999999999999999998864 2 257
Q ss_pred HHHHHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH
Q 018980 233 VTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQ 309 (348)
Q Consensus 233 ~~~la~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag-~~~e~~~~l~~~G~~lGiAFQ 309 (348)
++.++++. ..++.||.+|+.+... ..++++|++|+++|||+||+++|++|++++| ++++..+.+++||+++|+|||
T Consensus 148 i~~la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQ 226 (324)
T 3ts7_A 148 IETLAKASGPAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQ 226 (324)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888885 7899999999988765 7899999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 310 LIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 310 I~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|+||++|++++++.+||+.|+|+++||+|||++++++.
T Consensus 227 I~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~ 264 (324)
T 3ts7_A 227 IQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSG 264 (324)
T ss_dssp HHHHHHHHTCC---------------CCCHHHHHCHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999874
No 17
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=8.8e-59 Score=450.76 Aligned_cols=238 Identities=25% Similarity=0.332 Sum_probs=202.0
Q ss_pred hHHHHHHHHHHHHHHHHhhh--------cchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 018980 90 SLVADELSILAKRLRSMVVA--------EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 161 (348)
Q Consensus 90 ~~l~~eL~~v~~~l~~~~~~--------~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~ 161 (348)
.+++++++.|++.|.+.+.. .++.+.++.+|.+..| |||+||.|++++++++|++.
T Consensus 41 ~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-------------- 104 (335)
T 2h8o_A 41 TRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA-------------- 104 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH--------------
Confidence 46677888899999998866 4678999999999854 99999999999999998742
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHcc--C-----CHHH
Q 018980 162 ELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K-----NTEV 232 (348)
Q Consensus 162 ~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l--~-----~~~v 232 (348)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|++.+++. . ..++
T Consensus 105 ---~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~ 181 (335)
T 2h8o_A 105 ---EAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAAL 181 (335)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 25678999999999999999999 9999999999999999999999999999999999999986 1 2357
Q ss_pred HHHHHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 018980 233 VTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 310 (348)
Q Consensus 233 ~~~la~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI 310 (348)
++.+++++ ..++.||.+|+.+..+ ..++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||
T Consensus 182 ~~~ls~a~g~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI 260 (335)
T 2h8o_A 182 VISLARAAGIGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQL 260 (335)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899998 8899999999987665 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 311 IDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 311 ~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+||++|++++++.+||+.++||++||+|||++++++.
T Consensus 261 ~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~ 297 (335)
T 2h8o_A 261 ADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAW 297 (335)
T ss_dssp HHHHHHHC-----------------CCCHHHHHCHHH
T ss_pred HHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999999998863
No 18
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=6.8e-59 Score=445.76 Aligned_cols=238 Identities=25% Similarity=0.357 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 018980 90 SLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (348)
Q Consensus 90 ~~l~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~ 166 (348)
..+.++++.|++.|.+.+... .+.+.++.+|.+..| |||+||.|++++++++|++. +.
T Consensus 5 ~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~ 65 (299)
T 1rqj_A 5 QQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------NT 65 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HH
Confidence 466778889999999988764 678999999999854 99999999999999998742 26
Q ss_pred HHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC--------CHHHHHHH
Q 018980 167 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--------NTEVVTLL 236 (348)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~--------~~~v~~~l 236 (348)
+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++.. ..++++.+
T Consensus 66 ~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 145 (299)
T 1rqj_A 66 LDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISEL 145 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Confidence 788999999999999999999 99999999999999999999999999999999999998751 13577888
Q ss_pred HHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 018980 237 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLIDD 313 (348)
Q Consensus 237 a~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gail-ag~~~e~~~~l~~~G~~lGiAFQI~DD 313 (348)
++++ ..++.||.+|+.+..+ ..++++|++|+++|||+||+++|++|+++ +|++++..+.+++||.++|+||||+||
T Consensus 146 ~~~~g~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 146 ASASGIAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDD 224 (299)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 7999999999988765 68999999999999999999999999999 999899999999999999999999999
Q ss_pred hhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 314 VLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 314 llD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
++|++++++.+||+.|+||++||+|||++++++.
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~ 258 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 258 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999864
No 19
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.1e-58 Score=444.85 Aligned_cols=239 Identities=28% Similarity=0.324 Sum_probs=206.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 018980 89 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (348)
Q Consensus 89 ~~~l~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~ 165 (348)
..++......|++.|.+.+... ++.+.++.+|.+.. ||||+||.|++++++++|++.+
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~----------------- 64 (304)
T 3lsn_A 4 TAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMN--GGKRVRPLLAYAACEALGGKPE----------------- 64 (304)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHTTCCGG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhCCCHH-----------------
Confidence 3467777888999999988765 57899999999974 4999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC----CH----HHHHH
Q 018980 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----NT----EVVTL 235 (348)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~----~~----~v~~~ 235 (348)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||+|+++|+..+++.. ++ ++++.
T Consensus 65 ~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (304)
T 3lsn_A 65 QANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTT 144 (304)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 5678999999999999999999 99999999999999999999999999999999999999864 22 47788
Q ss_pred HHHHHH--HHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHH
Q 018980 236 LATVVE--HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLID 312 (348)
Q Consensus 236 la~~i~--~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~-~~e~~~~l~~~G~~lGiAFQI~D 312 (348)
+++++. .++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++|+ +++..+.+++||.++|+||||+|
T Consensus 145 l~~a~~~~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~D 223 (304)
T 3lsn_A 145 LAQAAGPAGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQD 223 (304)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHchhhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888874 599999999988765 48999999999999999999999999999999 89899999999999999999999
Q ss_pred hhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 313 DVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 313 DllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|++|++++++.+||+.++|+++||+|||++++++.
T Consensus 224 DilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~ 258 (304)
T 3lsn_A 224 DILDVESDTATLGKRQGADIARDKPTYPALLGLAA 258 (304)
T ss_dssp HHHHHHHHHHHC------------CCHHHHHCHHH
T ss_pred HHHhccCChHHhCCCcccHHhcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 20
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-58 Score=449.53 Aligned_cols=233 Identities=25% Similarity=0.240 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHH
Q 018980 93 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 172 (348)
Q Consensus 93 ~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 172 (348)
.+....+++.|.+.+....+.+.++..|++.. +|||+||.|++++++++|++. +.+..+|+
T Consensus 6 ~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~--gGKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~ 66 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHPDPLYRDLLQDYPRR--GGKMLRGLLTVYSALAHGAPL-----------------EAGLEAAT 66 (330)
T ss_dssp HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhC--CCccHHHHHHHHHHHHcCCCH-----------------HHHHHHHH
Confidence 34556788889988877888999999999884 499999999999999998642 25788999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHHHHHH
Q 018980 173 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGE 247 (348)
Q Consensus 173 avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-----~~v~~~la~~i~~l~~GQ 247 (348)
++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+ .++++.+++++..++.||
T Consensus 67 avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 146 (330)
T 1wmw_A 67 ALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQ 146 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987533 689999999999999999
Q ss_pred HHhccc-cCC-CCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc
Q 018980 248 TMQMTT-SSD-QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (348)
Q Consensus 248 ~ldl~~-~~~-~~~s~~~yl~i~~~KTasL-f~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 324 (348)
.+|+.+ ..+ ...++++|++|+++|||+| |++||++|++++|++++.. +++||.++|+||||+||++|++|+++ +
T Consensus 147 ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~ 223 (330)
T 1wmw_A 147 HLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-Y 223 (330)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-C
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-c
Confidence 999988 666 5789999999999999999 9999999999999988766 99999999999999999999999999 9
Q ss_pred CCCchhHHhcCcchHHHHHHHhh
Q 018980 325 GKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 325 GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
||+.++||++||+|||+++|++.
T Consensus 224 GK~~g~Dl~egK~T~p~i~al~~ 246 (330)
T 1wmw_A 224 GKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp SSSTTHHHHHTCCCHHHHHHHHH
T ss_pred CCCcCchhhCCCCCHHHHHHHHh
Confidence 99999999999999999999974
No 21
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=3.2e-58 Score=441.33 Aligned_cols=237 Identities=25% Similarity=0.315 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 018980 91 LVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (348)
Q Consensus 91 ~l~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~ 167 (348)
-+..++..|++.|.+.+... .+.+.++.+|.+..| |||+||.|++++++++|++.+ .+
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~ 72 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS-----------------DL 72 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG-----------------GT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HH
Confidence 45678888999999988764 578999999999854 999999999999999987643 56
Q ss_pred HHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC--C------HHHHHHHH
Q 018980 168 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLLA 237 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~--~------~~v~~~la 237 (348)
..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++.. + .++++.++
T Consensus 73 ~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 152 (302)
T 3p8r_A 73 DTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALA 152 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 78999999999999999999 99999999999999999999999999999999999998864 1 24778888
Q ss_pred HHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHhh
Q 018980 238 TVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDV 314 (348)
Q Consensus 238 ~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag-~~~e~~~~l~~~G~~lGiAFQI~DDl 314 (348)
+++ ..++.||.+|+.+.. ...++++|++|+++|||+||+++|++|++++| ++++..+.+++||+++|+||||+||+
T Consensus 153 ~a~g~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 153 EASGAQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp HHHSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886 689999999998874 46899999999999999999999999999999 78888899999999999999999999
Q ss_pred hhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 315 LDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 315 lD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+|++++++.+||+.++|+++||+|||++++++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~ 264 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALLGLEG 264 (302)
T ss_dssp HHHTTC---------------CCCHHHHHHHHH
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHHHHHH
Confidence 999999999999999999999999999999874
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=2e-58 Score=442.84 Aligned_cols=233 Identities=27% Similarity=0.339 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHhhh--cchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHH
Q 018980 95 ELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 172 (348)
Q Consensus 95 eL~~v~~~l~~~~~~--~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 172 (348)
....|++.|.+.+.. ..+.+.++.+|.+.. ||||+||.|++++++++|++.+ .+..+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNA--GGKRIRPVLLLLTLDSLNTEYE-----------------LGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTS--CCCCHHHHHHHHHHHHTTSCGG-----------------GGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHH
Confidence 445688888887765 567899999999974 5999999999999999987532 4567999
Q ss_pred HHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHH--HH
Q 018980 173 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EH 242 (348)
Q Consensus 173 avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l------~~~~v~~~la~~i--~~ 242 (348)
++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++. ...++++.+++++ ..
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 999999999999999 9999999999999999999999999999999999999986 2346788899988 88
Q ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc
Q 018980 243 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 322 (348)
Q Consensus 243 l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~ 322 (348)
++.||.+|+.+..+ ..++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 150 ~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~ 228 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEA 228 (301)
T ss_dssp HHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999987665 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHhcCcchHHHHHHHhh
Q 018980 323 SLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 323 ~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
.+||+.++|+++||+|||++++++.
T Consensus 229 ~~GK~~g~Dl~~gK~T~p~l~al~~ 253 (301)
T 1rtr_A 229 KLGKKVGSDLENNKSTYVSLLGKDG 253 (301)
T ss_dssp C-------------CCHHHHHHHHH
T ss_pred HhCCCcchHHHcCCCcHHHHHHHHH
Confidence 9999999999999999999999874
No 23
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=6.8e-58 Score=438.05 Aligned_cols=235 Identities=26% Similarity=0.317 Sum_probs=192.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHH
Q 018980 90 SLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168 (348)
Q Consensus 90 ~~l~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (348)
..+++....|++.|.+.+... .+.+.++.+|. .. ||||+||.|++++++++|++. +.+.
T Consensus 5 ~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~--gGKrlRp~L~l~~~~~~g~~~-----------------~~~~ 64 (297)
T 3m0g_A 5 ERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQ--GGKRLRAFLAIESAAIHGISM-----------------AQAM 64 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HS--CSCCHHHHHHHHHHHHTTCCH-----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cC--CCCcHHHHHHHHHHHHhCCCH-----------------HHHH
Confidence 456777788899999888765 56899999999 64 599999999999999998753 2688
Q ss_pred HHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC--C----HHHHHHHHHHH
Q 018980 169 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVVTLLATVV 240 (348)
Q Consensus 169 ~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~--~----~~v~~~la~~i 240 (348)
.+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||+|+++|+..+++.. + .++++.+++++
T Consensus 65 ~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~ 144 (297)
T 3m0g_A 65 PAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQAS 144 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999999999999999999998764 2 35788899998
Q ss_pred --HHHHHHHHHhccccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018980 241 --EHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 317 (348)
Q Consensus 241 --~~l~~GQ~ldl~~~~-~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~ 317 (348)
..++.||.+|+.+.. ....++++|++|+++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|+
T Consensus 145 g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~ 221 (297)
T 3m0g_A 145 GAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDV 221 (297)
T ss_dssp STTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC--
T ss_pred hHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999998762 3367999999999999999999999999999999877 8999999999999999999999
Q ss_pred cCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 318 TGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 318 ~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+++++.+||+.++|+++||+|||++++++.
T Consensus 222 ~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~ 251 (297)
T 3m0g_A 222 EGNEEAAGKRLGKDAEAHKATFVSLLGLAG 251 (297)
T ss_dssp -------------------CCHHHHHCSSH
T ss_pred cCCHHHhCCCccchhhcCCccHHHHHHHHH
Confidence 999999999999999999999999998864
No 24
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=4.6e-58 Score=447.16 Aligned_cols=229 Identities=19% Similarity=0.280 Sum_probs=199.4
Q ss_pred HHHHHHHHh---hhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 018980 99 LAKRLRSMV---VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (348)
Q Consensus 99 v~~~l~~~~---~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 175 (348)
+++.+.+.. ....+.+.++..|++.. ||||+||.|++++++++|.+. +.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLK--PGKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTS--CCCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhC--CCccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH
Confidence 556666555 35567899999999985 499999999999999998632 25788999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHH-----HHHHHHHHHHHHHHHHHHh
Q 018980 176 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQ 250 (348)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~-----v~~~la~~i~~l~~GQ~ld 250 (348)
|||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+++ +++.+++++..++.||.+|
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ld 150 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLD 150 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887766 8999999999999999999
Q ss_pred ccccCCC---CCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCC
Q 018980 251 MTTSSDQ---RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327 (348)
Q Consensus 251 l~~~~~~---~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~ 327 (348)
+.+..+. ..++++|++++++|||+||+++|++|++++|.++ ..+.+++||.++|+||||+||++|++|+++.+|||
T Consensus 151 l~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 229 (340)
T 2e8v_A 151 IYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKG 229 (340)
T ss_dssp HHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_pred HHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 9876543 5699999999999999999999999999999987 57899999999999999999999999999999999
Q ss_pred chhHHhcCcchHHHHHHHhh
Q 018980 328 SLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 328 ~~~Dl~~gk~T~pvl~ale~ 347 (348)
.|+||++||+|+|+++|++.
T Consensus 230 ~g~Dl~egK~Tlp~i~al~~ 249 (340)
T 2e8v_A 230 FAEDITEGKLSFPIVHALNF 249 (340)
T ss_dssp TTHHHHTTCCCHHHHHHHHH
T ss_pred chhhHhcCCchHHHHHHHHh
Confidence 99999999999999999974
No 25
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.7e-57 Score=438.01 Aligned_cols=238 Identities=24% Similarity=0.340 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 018980 90 SLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (348)
Q Consensus 90 ~~l~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~ 166 (348)
.++.+....|++.|.+.+... ++.+.++.+|.+.. ||||+||.|++++++++|++. +.
T Consensus 11 ~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~-----------------~~ 71 (313)
T 3lom_A 11 QVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFS--GGKRIRPILVYLAGDLIDVDQ-----------------GV 71 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCC--SSCCHHHHHHHHHHHHTTCCH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCH-----------------HH
Confidence 455666677888888888653 67899999999974 599999999999999998753 26
Q ss_pred HHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC-C-------HHHHHHH
Q 018980 167 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N-------TEVVTLL 236 (348)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~-~-------~~v~~~l 236 (348)
+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||+|++.|++.+++.. + .++++.+
T Consensus 72 ~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~l 151 (313)
T 3lom_A 72 LDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVL 151 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 889999999999999999999 99999999999999999999999999999999999988652 1 2467778
Q ss_pred HHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHH
Q 018980 237 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLID 312 (348)
Q Consensus 237 a~~i--~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag--~~~e~~~~l~~~G~~lGiAFQI~D 312 (348)
++++ ..++.||.+|+.+..+...++++|++|+++|||+||+++|++ ++++| ++++..+.+++||.++|+||||+|
T Consensus 152 a~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~D 230 (313)
T 3lom_A 152 VNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQD 230 (313)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 689999999999877667899999999999999999999999 99999 899999999999999999999999
Q ss_pred hhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 313 DVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 313 DllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|++|++|+++.+||+.++|+++||+|||++++++.
T Consensus 231 DilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~ 265 (313)
T 3lom_A 231 DYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQ 265 (313)
T ss_dssp HHHHHHCC---------------CCCHHHHSCHHH
T ss_pred HHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 26
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=9.6e-57 Score=443.27 Aligned_cols=247 Identities=25% Similarity=0.281 Sum_probs=200.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcchh---HHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 018980 88 PFSLVADELSILAKRLRSMVVAEVPK---LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (348)
Q Consensus 88 ~~~~l~~eL~~v~~~l~~~~~~~~~~---l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~ 164 (348)
....|.++|+.+-......+....|. +.+...|++.. ||||+||+|++++++++|+..+.. ...
T Consensus 21 ~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~--gGKrlRp~l~l~~~~~~g~~~~~~-----------~~~ 87 (380)
T 3lk5_A 21 FPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLN--GGKRIRPLYAWAGFLAAQGHKNSS-----------EKL 87 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHHTTSCCS-----------SCH
T ss_pred HHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHcCCCcccc-----------CCH
Confidence 34566677766665555555444454 55666677664 599999999999999998742100 012
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccc----------------cCHHHHHHHHHHHHHHHHHHHHccC
Q 018980 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALASLK 228 (348)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~----------------~G~~~AVlaGD~Lla~a~~~La~l~ 228 (348)
+.+..+|+++||||+||||||||||+|++|||+||+|++ ||++.|||+||||+++|+..+++..
T Consensus 88 ~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~ 167 (380)
T 3lk5_A 88 ESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSG 167 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 478899999999999999999999999999999999997 5999999999999999999998864
Q ss_pred C-----HHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 018980 229 N-----TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGK 302 (348)
Q Consensus 229 ~-----~~v~~~la~~i~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasL-f~~a~~~gailag~~~e~~~~l~~~G~ 302 (348)
. .++++.++.+...++.||++|+.+..+...++++|++|+++|||+| |++||++|++++|++++..+.+++||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~ 247 (380)
T 3lk5_A 168 LSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGH 247 (380)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 2567788888899999999999887766779999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 303 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 303 ~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
++|+||||+||++|++|+++.+|||.|+||++||+|+|+++|++.
T Consensus 248 ~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~ 292 (380)
T 3lk5_A 248 DIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQR 292 (380)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHh
Confidence 999999999999999999999999999999999999999999974
No 27
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.2e-57 Score=437.50 Aligned_cols=222 Identities=20% Similarity=0.233 Sum_probs=195.6
Q ss_pred HHHHhhhcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018980 103 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 182 (348)
Q Consensus 103 l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsL 182 (348)
+++.+.+..+.+.++.+|++.. ||||+||.|++++++++|.+. +.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~--gGKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQL--PGKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTS--SCHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhC--CCccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 3555666778899999999984 599999999999999998642 257889999999999999
Q ss_pred hhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhccccCCC-CCCH
Q 018980 183 LHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM 261 (348)
Q Consensus 183 IHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ~ldl~~~~~~-~~s~ 261 (348)
|||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++++++.+++++..++.||.+|+.+..+. ..++
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 142 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTE 142 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 999999999999999999999999999999999999999999998888899999999999999999999875443 5799
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHH
Q 018980 262 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLL 341 (348)
Q Consensus 262 ~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pv 341 (348)
++|++++++|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||+|||+
T Consensus 143 ~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHH
Confidence 999999999999999999999999999873 5899999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 018980 342 FIASEI 347 (348)
Q Consensus 342 l~ale~ 347 (348)
++|++.
T Consensus 219 i~al~~ 224 (301)
T 2q80_A 219 IHAIWS 224 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999973
No 28
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-57 Score=427.95 Aligned_cols=227 Identities=25% Similarity=0.355 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhhh-cchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 018980 97 SILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (348)
Q Consensus 97 ~~v~~~l~~~~~~-~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 175 (348)
+++++.|.+.+.. .++.+.++.+|.+.. ||||+||.|++++++++|++. +.+..+|+++|
T Consensus 16 ~~v~~~l~~~l~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avE 76 (284)
T 2ftz_A 16 EXVEERIREILRPGWDLLTEEAMLYSATV--GGXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAVE 76 (284)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHHH
Confidence 4567777776633 356899999999985 499999999999999998742 25788999999
Q ss_pred HHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhccc
Q 018980 176 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 253 (348)
Q Consensus 176 liH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ~ldl~~ 253 (348)
|||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++..+.++++.+++++..++.||.+|+.+
T Consensus 77 liH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~ 156 (284)
T 2ftz_A 77 LFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEF 156 (284)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 999999999999 999999999999999999999999999999999999998877789999999999999999999987
Q ss_pred cCCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHH
Q 018980 254 SSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 332 (348)
Q Consensus 254 ~~~~-~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl 332 (348)
..+. ..++++|++++++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|++++++.+||+.++||
T Consensus 157 ~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl 233 (284)
T 2ftz_A 157 ERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDT 233 (284)
T ss_dssp HHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------
T ss_pred ccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhc
Confidence 7654 68999999999999999999999999999999877 8999999999999999999999999999999999999
Q ss_pred hcCcchHHHHHHHhh
Q 018980 333 RHVIYLSLLFIASEI 347 (348)
Q Consensus 333 ~~gk~T~pvl~ale~ 347 (348)
+ |+|||++++++.
T Consensus 234 ~--K~T~p~l~~l~~ 246 (284)
T 2ftz_A 234 E--XVTLVXXVGIQX 246 (284)
T ss_dssp -----CHHHHHCHHH
T ss_pred c--ccchHHHHHHHH
Confidence 9 999999999874
No 29
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.7e-56 Score=431.70 Aligned_cols=229 Identities=29% Similarity=0.387 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhhh-cchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 018980 96 LSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174 (348)
Q Consensus 96 L~~v~~~l~~~~~~-~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 174 (348)
+..|++.|.+.+.. ..+.+.. .|.+. .||||+||.|++++++.. . . ....+++..+|+++
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~~--~y~~~--~gGKrlRp~l~l~~~~~~-~--~------------~~~~~~~~~~A~ai 66 (315)
T 3tc1_A 6 LKAIQNKIASWIKEIESGFIDE--LFSKI--GPSKMLRSKLMLALLNEK-T--D------------AILLDKALNLCTIV 66 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH--HHTTC--CCCCCHHHHHHHTTCCTT-C--C------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHhc--CCcccHHHHHHHHHhccC-c--c------------ccchhhHHHHHHHH
Confidence 46677788877753 2343332 46554 569999999999987721 1 0 01124678999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhcccc
Q 018980 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 254 (348)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ~ldl~~~ 254 (348)
||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++.+ +++++.+++++..++.||.+|+.+.
T Consensus 67 EliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 145 (315)
T 3tc1_A 67 EMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVG 145 (315)
T ss_dssp HHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999876 8999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhc
Q 018980 255 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334 (348)
Q Consensus 255 ~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~ 334 (348)
.+...++++|++++++|||+||++||++|++++|++ .+.+++||.++|+||||+||++|++|+++.+|||.|+||++
T Consensus 146 ~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~e 222 (315)
T 3tc1_A 146 ECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKE 222 (315)
T ss_dssp TSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGG
T ss_pred CCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHc
Confidence 776789999999999999999999999999999998 67899999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHhh
Q 018980 335 VIYLSLLFIASEI 347 (348)
Q Consensus 335 gk~T~pvl~ale~ 347 (348)
||+|||+++|++.
T Consensus 223 gK~T~p~i~al~~ 235 (315)
T 3tc1_A 223 GKTTLPYLLLYEK 235 (315)
T ss_dssp TCCCHHHHHHHTT
T ss_pred CChhHHHHHHHHh
Confidence 9999999999975
No 30
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=3.2e-56 Score=428.86 Aligned_cols=233 Identities=26% Similarity=0.314 Sum_probs=195.9
Q ss_pred HHHHHHHHhh---hcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 018980 99 LAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (348)
Q Consensus 99 v~~~l~~~~~---~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 175 (348)
|++.|.+.+. ...+.+.++.+|.+..| |||+||.|++++++++|++.. .++..+.+..+|+++|
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHH
Confidence 7777777764 24578999999999854 999999999999999987421 1234457889999999
Q ss_pred HHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHc--cCCH---HHHHHHHHH--HHHHHHH
Q 018980 176 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKNT---EVVTLLATV--VEHLVTG 246 (348)
Q Consensus 176 liH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~--l~~~---~v~~~la~~--i~~l~~G 246 (348)
|||+|||||||| ||+|++|||+||+|++||+..|||+||+|++.|+..+++ ..+. ++++.++++ +..++.|
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~G 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999987 3322 467888888 5799999
Q ss_pred HHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCccccC
Q 018980 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 325 (348)
Q Consensus 247 Q~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~-~~l~~~G~~lGiAFQI~DDllD~~g~~~~~G 325 (348)
|.+|+.+. +...++++|++|+++|||+||+++|++|++++|++++.. +.+++||.++|+||||+||++|++|+++.+|
T Consensus 165 Q~lDl~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 243 (311)
T 3llw_A 165 QALDCYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESG 243 (311)
T ss_dssp HHHHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHC
Confidence 99999876 356899999999999999999999999999999998888 8999999999999999999999999999999
Q ss_pred CCchhHHhcCcchHHHHHHHhh
Q 018980 326 KGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 326 K~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|+.++ ++||+|||+++++++
T Consensus 244 K~~g~--~~gK~T~p~l~~l~~ 263 (311)
T 3llw_A 244 KTTHL--DSAKNSFVNLLGLER 263 (311)
T ss_dssp ---------CCSCHHHHHCHHH
T ss_pred ccccc--ccCcchHHHHHHHHH
Confidence 99876 999999999999975
No 31
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=7.8e-56 Score=422.56 Aligned_cols=230 Identities=27% Similarity=0.350 Sum_probs=191.0
Q ss_pred HHHHHHHHHHhh---hcchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHH
Q 018980 97 SILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173 (348)
Q Consensus 97 ~~v~~~l~~~~~---~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 173 (348)
+.+++.|.+.+. ...|.+.++.+|.+..| |||+||.|++++++++|++. .+.+..+|++
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~a 68 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALA 68 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHH
Confidence 345666666553 34678999999999855 99999999999999997631 1367889999
Q ss_pred HHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC-C----HHHHHHHHHH--HHHHH
Q 018980 174 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHLV 244 (348)
Q Consensus 174 vEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~-~----~~v~~~la~~--i~~l~ 244 (348)
+||||+|||||||| ||+|++|||+||+|++||++.|||+||+|++.|++.+++.. + .++++.++++ +..++
T Consensus 69 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~ 148 (291)
T 3npk_A 69 LEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMV 148 (291)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999 99999999999999999999999999999999999998753 2 2577888998 89999
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc
Q 018980 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (348)
Q Consensus 245 ~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 324 (348)
.||.+|+.+.. ...++++|.+|+++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|++++++.+
T Consensus 149 ~GQ~lDl~~~~-~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 227 (291)
T 3npk_A 149 IGQAIDCFFED-KRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQS 227 (291)
T ss_dssp HHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 99999998764 36799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhcCcchHHHHHHHhh
Q 018980 325 GKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 325 GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
||+.+.| +||+|||++++++.
T Consensus 228 GK~~~~d--~gK~T~p~l~~l~~ 248 (291)
T 3npk_A 228 GKPTNND--IHKNSFVNLLGLEQ 248 (291)
T ss_dssp ------------CCHHHHHCHHH
T ss_pred CCccchh--cCcchHHHHHHHHH
Confidence 9998776 99999999999974
No 32
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.2e-55 Score=434.93 Aligned_cols=220 Identities=21% Similarity=0.216 Sum_probs=182.3
Q ss_pred hHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 018980 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 192 (348)
Q Consensus 113 ~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~ 192 (348)
.+..+.+|.. .||||+||+|++++++++++... .++..+.+..+|+|+||||+||||||||||+|+
T Consensus 67 ~~~~~~~Y~~---~GGKRlRP~l~l~~~~~~~~~~~-----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNC---LGGKNNRGILVILIYEYVKNRDI-----------NSSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHH---SSSCCHHHHHHHHHHHHHHC-CC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCC---CCchhhhHHHHHHHHHHhCCCCC-----------CcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 3555667776 35999999999999999987542 234456789999999999999999999999999
Q ss_pred CCCCCCCcccccCHHHHHHHHHHHHH--HHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHhccccCC---------
Q 018980 193 TRRGIGSLNFVMGNKLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD--------- 256 (348)
Q Consensus 193 ~RRG~pt~h~~~G~~~AVlaGD~Lla--~a~~~La~l-----~~~~v~~~la~~i~~l~~GQ~ldl~~~~~--------- 256 (348)
+|||+||+|.+||++.||++||+|+. .++..+... ...++++.++++...++.||.+|+.+..+
T Consensus 133 ~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~ 212 (395)
T 3mav_A 133 MRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREI 212 (395)
T ss_dssp EETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCC
T ss_pred CCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHh
Confidence 99999999999999999999998774 455555432 23578999999999999999999864321
Q ss_pred ---------------CCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 018980 257 ---------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDFT 318 (348)
Q Consensus 257 ---------------~~~s~~~yl~i~~~KTasL-f~~a~~~gailag~~--~e~~~~l~~~G~~lGiAFQI~DDllD~~ 318 (348)
...++++|++|+++|||+| |.+||.+|++++|.+ ++..+.+++||.++|+||||+||++|++
T Consensus 213 ~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 213 DVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp CSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2468999999999999999 999999999999975 3467899999999999999999999999
Q ss_pred CCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 319 GTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 319 g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
|+++.+|| +|+||++||+|||+++|+++
T Consensus 293 gd~~~~GK-~g~Dl~egK~T~p~i~al~~ 320 (395)
T 3mav_A 293 GDSTKTGK-VGSDIQNNKLTWPLIKTFEL 320 (395)
T ss_dssp ---------CCCTTTTTCCCHHHHHHHHH
T ss_pred CCHhhhcc-cccHHhcCCchHHHHHHHHh
Confidence 99999999 69999999999999999985
No 33
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2.5e-55 Score=419.95 Aligned_cols=224 Identities=27% Similarity=0.387 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhhhc-chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 018980 96 LSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174 (348)
Q Consensus 96 L~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 174 (348)
...|++.|.+.+... .|.+.++.+|.+.. ||||+||.|++++++++|++.+ .+..+|+++
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~av 71 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHS--GGKRIRPIILLLVSEICSGSYS-----------------RSLNAALAV 71 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHH
Confidence 356777777777653 37899999999984 5999999999999999987643 567899999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhcccc
Q 018980 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 254 (348)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ~ldl~~~ 254 (348)
||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++.. +.++++.+++++..++.||.+|+.+.
T Consensus 72 EliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~-~~~~~~~~~~~~~~~~~GQ~~dl~~~ 150 (295)
T 3ipi_A 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY-GEKVIQDFGKAGMDMAEGEVLDLKLE 150 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG-CHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHHHHccchHHHHcc
Confidence 99999999999999999999999999999999999999999999999988876 57899999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhc
Q 018980 255 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334 (348)
Q Consensus 255 ~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~ 334 (348)
.+ .+++++|++++++|||+||++||++|++++|++++..+.+++||+++|+||||+||++|++++++ || |+.+
T Consensus 151 ~~-~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~ 223 (295)
T 3ipi_A 151 DE-SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKF 223 (295)
T ss_dssp ------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---------
T ss_pred CC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----Cccc
Confidence 54 37889999999999999999999999999999999999999999999999999999999998764 55 6789
Q ss_pred CcchHHHHHHHh
Q 018980 335 VIYLSLLFIASE 346 (348)
Q Consensus 335 gk~T~pvl~ale 346 (348)
||+|||++++++
T Consensus 224 gk~Tlp~l~al~ 235 (295)
T 3ipi_A 224 TSETLPHIYMKS 235 (295)
T ss_dssp --CCHHHHHTTT
T ss_pred CcccHHHHHHHh
Confidence 999999999854
No 34
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=6.7e-55 Score=428.21 Aligned_cols=226 Identities=18% Similarity=0.132 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 018980 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (348)
Q Consensus 112 ~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (348)
+.+.++.+|.+ .||||+||.|++++++++|+....+. + ........+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~---~gGKrlRp~l~l~~~~~~~~~~~~~~-----~-~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC---LGGKYFRGMTVVNVAEGFLAVTQHDE-----A-TKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH---SSSCCHHHHHHHHHHHHHHTTSCCCH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc---CCcccHHHHHHHHHHHHhCCCcCCCh-----h-hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46788888887 45999999999999999986431000 0 001123344558899999999999999999999
Q ss_pred CCCCCCCCcccccCH--HHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHhcccc----------
Q 018980 192 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 254 (348)
Q Consensus 192 ~~RRG~pt~h~~~G~--~~AVlaGD~Lla~a~~~La~l-----~~~~v~~~la~~i~~l~~GQ~ldl~~~---------- 254 (348)
++|||+||+|.+||+ +.|||+||||+++|+..+++. .+.++++.+++++..++.||.+|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999999875 346899999999999999999999876
Q ss_pred -C--CC---CCCHHHHHHHHHhhHHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCC
Q 018980 255 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 326 (348)
Q Consensus 255 -~--~~---~~s~~~yl~i~~~KTasL-f~~a~~~gailag-~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 326 (348)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++|+++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 2 21 479999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred CchhHHhcCcchHHHHHHHhh
Q 018980 327 GSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 327 ~~~~Dl~~gk~T~pvl~ale~ 347 (348)
.|+||++||+|||+++|++.
T Consensus 265 -~g~Dl~egK~T~p~l~al~~ 284 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGK 284 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTT
T ss_pred -ChhhHhcCCchHHHHHHHHh
Confidence 89999999999999999975
No 35
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=9.8e-55 Score=428.51 Aligned_cols=222 Identities=21% Similarity=0.188 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 018980 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (348)
Q Consensus 112 ~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (348)
+.+.++.+|.. .||||+||++++++++++|++.. .+.+....+..+|+++||||+||||||||||+|
T Consensus 64 ~~l~~~~~y~~---~gGKrlRp~l~l~~~~~~~~~~~----------~~~~~~~~a~~~A~avEliH~asLIHDDImD~s 130 (374)
T 2qis_A 64 ARLKEVLEYNA---IGGKYNRGLTVVVAFRELVEPRK----------QDADSLQRAWTVGWCVELLQAFFLVADDIMDSS 130 (374)
T ss_dssp HHHHHHHHHHS---SSSCCHHHHHHHHHHHHHSCGGG----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc---CCCcchHHHHHHHHHHHhCCCCc----------cchHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 46888888876 46999999999999999986421 011223467889999999999999999999999
Q ss_pred CCCCCCCCcccccCHH-HHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHhccccCCC-----CCC
Q 018980 192 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 260 (348)
Q Consensus 192 ~~RRG~pt~h~~~G~~-~AVlaGD~Lla~a~~~La~l-----~~~~v~~~la~~i~~l~~GQ~ldl~~~~~~-----~~s 260 (348)
++|||+||+|++||++ +||++||+|++.++..++.. .+.++++.+++++..++.||.+|+.+.... ..+
T Consensus 131 ~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 210 (374)
T 2qis_A 131 LTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFT 210 (374)
T ss_dssp CEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCC
T ss_pred CCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCC
Confidence 9999999999999999 99999999999999888764 346899999999999999999999876531 379
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcch
Q 018980 261 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 338 (348)
Q Consensus 261 ~~~yl~i~~~KTasL-f~~a~~~gailag-~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T 338 (348)
+++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++|+++.+|| .|+||++||+|
T Consensus 211 ~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T 289 (374)
T 2qis_A 211 EKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCS 289 (374)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCcc
Confidence 999999999999999 9999999999999 99999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhh
Q 018980 339 SLLFIASEI 347 (348)
Q Consensus 339 ~pvl~ale~ 347 (348)
||++++++.
T Consensus 290 ~p~l~al~~ 298 (374)
T 2qis_A 290 WLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999975
No 36
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.3e-54 Score=424.83 Aligned_cols=222 Identities=22% Similarity=0.165 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 018980 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (348)
Q Consensus 112 ~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (348)
+.+.++.+|.+ .||||+||++++++++++|+..+ .+.+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~---~gGKrlRp~l~l~~~~~~~~~~~----------~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA---PGGKCNRGLTVVAAYRELSGPGQ----------KDAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS---SSSCCHHHHHHHHHHHHHCCGGG----------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc---CCCcchhHHHHHHHHHHhCCCcc----------CChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 46888899987 35999999999999999986311 011223467889999999999999999999999
Q ss_pred CCCCCCCCcccccCHH-HHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHhccccCCC-----CCC
Q 018980 192 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 260 (348)
Q Consensus 192 ~~RRG~pt~h~~~G~~-~AVlaGD~Lla~a~~~La~l-----~~~~v~~~la~~i~~l~~GQ~ldl~~~~~~-----~~s 260 (348)
++|||+||+|.+||++ .+|+.||++++.++..+++. .+.++++.+++++..++.||.+|+.+.... ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999988764 346899999999999999999999876532 579
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcch
Q 018980 261 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 338 (348)
Q Consensus 261 ~~~yl~i~~~KTasL-f~~a~~~gailag-~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T 338 (348)
+++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++|+++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhh
Q 018980 339 SLLFIASEI 347 (348)
Q Consensus 339 ~pvl~ale~ 347 (348)
||++++++.
T Consensus 283 ~p~l~al~~ 291 (367)
T 1uby_A 283 WLVVQCLQR 291 (367)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999975
No 37
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.6e-54 Score=427.64 Aligned_cols=245 Identities=20% Similarity=0.200 Sum_probs=199.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhh-hcc-----hhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhh
Q 018980 85 QLDPFSLVADELSILAKRLRSMVV-AEV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 158 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~-~~~-----~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~ 158 (348)
+.+.|..+.+++.+. +.+... .+. +.+.++.+|.. . ||||+||+||+++++++|+...
T Consensus 36 f~~~~~~~~~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~Y~~-~--GGKrlRp~Lvl~~~~~~g~~~~---------- 99 (395)
T 2ihi_A 36 FRNMYDKYRDAFLSH---LNEYSLEEEIKEHISKYYKLLFDYNC-L--GGKNNRGILVILIYEYVKNRDI---------- 99 (395)
T ss_dssp TTTTHHHHHHHHHHH---HHTSSCCHHHHHHHHHHHHHHHHHHH-S--SSCCHHHHHHHHHHHHHC---C----------
T ss_pred HHHHHHHHHHHHHHH---HhhCCCChhhhhhHHHHHHHHHHhhc-c--CcccHHHHHHHHHHHHhCCCCC----------
Confidence 777788777777443 222111 111 46778889987 3 5999999999999999987421
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHH--HHHHHHHHHHHHHHHHHcc-C----CHH
Q 018980 159 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL-K----NTE 231 (348)
Q Consensus 159 ~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~--AVlaGD~Lla~a~~~La~l-~----~~~ 231 (348)
+.+..+.+..+|+|+||||+||||||||||+|++|||+||+|++||++. ||++||+|++.++..++.. . ..+
T Consensus 100 -~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~ 178 (395)
T 2ihi_A 100 -NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVD 178 (395)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 1233457889999999999999999999999999999999999999998 9999999999999988763 1 257
Q ss_pred HHHHHHHHHHHHHHHHHHhcc------------------ccC--CC----CCCHHHHHHHHHhhHHHH-HHHHHHHHHHH
Q 018980 232 VVTLLATVVEHLVTGETMQMT------------------TSS--DQ----RCSMDYYMQKTYYKTASL-ISNSCKAIALL 286 (348)
Q Consensus 232 v~~~la~~i~~l~~GQ~ldl~------------------~~~--~~----~~s~~~yl~i~~~KTasL-f~~a~~~gail 286 (348)
+++++++++..++.||.+|+. ... .. ..++++|++|+++|||+| |.+||++|+++
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~l 258 (395)
T 2ihi_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 999999999999999999992 111 11 578999999999999999 99999999999
Q ss_pred hCCCHHH--HHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 287 AGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 287 ag~~~e~--~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
+|++++. .+.+++||.++|+||||+||++|++|+++.+|| .|+||++||+|||+++|++.
T Consensus 259 ag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~ 320 (395)
T 2ihi_A 259 AGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFEL 320 (395)
T ss_dssp TTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHh
Confidence 9999887 889999999999999999999999999999999 99999999999999999985
No 38
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.6e-54 Score=427.40 Aligned_cols=254 Identities=19% Similarity=0.163 Sum_probs=202.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhc-------chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCC-CCCCCCch
Q 018980 85 QLDPFSLVADELSILAKRLRSMVVAE-------VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP-EPLHDGVE 156 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~~~-------~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~-~~~~~~~~ 156 (348)
.++.+..+.+-+..+++.|.+.+... .+.+.++.+|.+ . ||||+||+||+++++++|+..+ .+.. ..
T Consensus 22 ~~~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~--GGKr~Rp~l~l~~~~~l~~~~~~~~~~--~~ 96 (390)
T 3dyh_A 22 ASMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-L--GGKYNRGLTVIDVAESLLSLSPNNNGE--ED 96 (390)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-S--SSCCHHHHHHHHHHHHTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-C--CccchhHHHHHHHHHHhCCcccccccc--cc
Confidence 34444445555555566555554432 235888999988 4 4999999999999999986110 0000 00
Q ss_pred hhHhHHHHHHHHHHHH----HHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHH--HHHHHcc-CC
Q 018980 157 DALATELRTRQQCIAE----ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-KN 229 (348)
Q Consensus 157 ~~~~~~~~~~~~~lA~----avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a--~~~La~l-~~ 229 (348)
+.. ..+.+..+|+ |+||||+||||||||||+|++|||+||+|.+||++.||++||+|+..+ +..++.. .+
T Consensus 97 ~~~---~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~ 173 (390)
T 3dyh_A 97 DGA---RRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFAD 173 (390)
T ss_dssp CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccC---CHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 000 1123444444 899999999999999999999999999999999999999999999755 5677653 22
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhcccc-----------CC-----CCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHhC
Q 018980 230 ----TEVVTLLATVVEHLVTGETMQMTTS-----------SD-----QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG 288 (348)
Q Consensus 230 ----~~v~~~la~~i~~l~~GQ~ldl~~~-----------~~-----~~~s~~~yl~i~~~KTasL-f~~a~~~gailag 288 (348)
.++++.+++++..++.||.+|+.+. .. ...++++|++|+++|||+| |++||++|++++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~lag 253 (390)
T 3dyh_A 174 RPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSE 253 (390)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999762 11 2579999999999999999 9999999999999
Q ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 289 QTAEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 289 ~~~e~-~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
++++. .+.+++||.++|+||||+||++|++|+++.+|| .|+||++||+|||+++|+++
T Consensus 254 a~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~ 312 (390)
T 3dyh_A 254 ALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAK 312 (390)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHh
Confidence 98875 788999999999999999999999999999999 99999999999999999985
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=8.6e-55 Score=428.17 Aligned_cols=214 Identities=19% Similarity=0.174 Sum_probs=189.7
Q ss_pred hHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 018980 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 192 (348)
Q Consensus 113 ~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~ 192 (348)
++.++.+|.+ .||||+||++++++++++++.... ..+.+..+|+||||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~---~GGKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNV---KKGKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHT---TCSTTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCC---CCccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 4778889987 469999999999999999875431 123678899999999999999999999999
Q ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHHHHHHhccccC--CCCCCHHH
Q 018980 193 TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 263 (348)
Q Consensus 193 ~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-------~~v~~~la~~i~~l~~GQ~ldl~~~~--~~~~s~~~ 263 (348)
+|||+||+|.+||++.|||+||+|++.|+..++...+ .++++.+++++..++.||.+|+.+.. +...++++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 9999999999999999999999999999998876532 36788999999999999999997653 34567899
Q ss_pred HHHHHHhhHHHH-HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHH
Q 018980 264 YMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSL 340 (348)
Q Consensus 264 yl~i~~~KTasL-f~~a~~~gailag--~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~p 340 (348)
|++++.+|||.| |.+||.+|++++| ++++..+.+++||.++|+||||+||++|+++ ||+.|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 7999999999998 4667778899999999999999999999986 8999999999999999
Q ss_pred HHHHHhh
Q 018980 341 LFIASEI 347 (348)
Q Consensus 341 vl~ale~ 347 (348)
+++|+++
T Consensus 278 ~i~al~~ 284 (368)
T 2q58_A 278 LQKSFEI 284 (368)
T ss_dssp HHSSTTT
T ss_pred HHHHHHh
Confidence 9999975
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=3.1e-53 Score=404.46 Aligned_cols=217 Identities=23% Similarity=0.302 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHH
Q 018980 91 LVADELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 169 (348)
Q Consensus 91 ~l~~eL~~v~~~l~~~~~~-~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (348)
.+.+-.+.+++.|.+.+.. ..+.+.++.+|.+. | |||+||.|++++++++|++.+ .+..
T Consensus 14 ~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~ 73 (289)
T 2azj_A 14 FWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDIK-----------------DSYG 73 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCGG-----------------GGHH
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCHH-----------------HHHH
Confidence 3444455677888887765 46779999999986 5 999999999999999987422 4577
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHH
Q 018980 170 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGET 248 (348)
Q Consensus 170 lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~L-a~l~~~~v~~~la~~i~~l~~GQ~ 248 (348)
+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||+|+++|+..+ ++.+ +++++.+++++..++.||.
T Consensus 74 ~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~ 152 (289)
T 2azj_A 74 GALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGAL 152 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 8775 5899999999999999999
Q ss_pred HhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCc
Q 018980 249 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 328 (348)
Q Consensus 249 ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~ 328 (348)
+|+.. +++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++|+ ||+
T Consensus 153 ~dl~~-------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~- 219 (289)
T 2azj_A 153 RDMYD-------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE- 219 (289)
T ss_dssp HTTTT-------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT-
T ss_pred HHHhh-------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh-
Confidence 99974 578999999999999999999999999 88889999999999999999999999999996 564
Q ss_pred hhHHhcCcchHHHHH
Q 018980 329 LSDIRHVIYLSLLFI 343 (348)
Q Consensus 329 ~~Dl~~gk~T~pvl~ 343 (348)
|+++||+|+|+++
T Consensus 220 --dl~~gk~Tlp~l~ 232 (289)
T 2azj_A 220 --EIDGSAKQLFKYY 232 (289)
T ss_dssp --TCCTTGGGGHHHH
T ss_pred --hhhcCcccHHHHH
Confidence 8999999999998
No 41
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=7.2e-55 Score=427.52 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=200.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhh-hcc-----hhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhh
Q 018980 85 QLDPFSLVADELSILAKRLRSMVV-AEV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 158 (348)
Q Consensus 85 ~~d~~~~l~~eL~~v~~~l~~~~~-~~~-----~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~ 158 (348)
+++.|+.+.+++.+. +...-. .+. +.+.++.+|.. .||||+||++++++++++|+..+.
T Consensus 28 f~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~y~~---~GGKrlRp~l~l~~~~~~g~~~~~--------- 92 (368)
T 2her_A 28 FINYYDKFKVIVYNV---LKKLPLNDEIRKPVIEYYLNCIDYNV---KKGKHIRGKILVLISSLSSAYSNI--------- 92 (368)
T ss_dssp GGGTHHHHHHHHHTT---CCCCTTSCCTTTTHHHHHHHHHHHHT---TSSTTTTTC-CHHHHTTTTCCCSS---------
T ss_pred HHHHHHHHHHHHHHH---HHhCCCCcchhhhHHHHHHHHHHHhh---CCCCccchHHHHHHHHHhCCCCcc---------
Confidence 666666666665332 222111 122 55777788876 459999999999999999764321
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHH---HHHHHHHHcc-C---CHH
Q 018980 159 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K---NTE 231 (348)
Q Consensus 159 ~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Ll---a~a~~~La~l-~---~~~ 231 (348)
..+.+..+|+++||||+||||||||||+|++|||+||+|.+||+..|||+||+|+ ++++..+++. . ..+
T Consensus 93 ----~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~ 168 (368)
T 2her_A 93 ----KRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMK 168 (368)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHH
Confidence 1247889999999999999999999999999999999999999999999999999 8888777653 2 247
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC-CCCH-HHHHHHHHhhHHHH-HHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHH
Q 018980 232 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-DYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGL 306 (348)
Q Consensus 232 v~~~la~~i~~l~~GQ~ldl~~~~~~-~~s~-~~yl~i~~~KTasL-f~~a~~~gailag~~~e~--~~~l~~~G~~lGi 306 (348)
+++.+++++..++.||.+|+.+.... .++. ++|++|+++|||+| |++||++|++++|++++. .+.+++||.++|+
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~ 248 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGE 248 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999887543 3445 99999999999999 999999999999998887 8899999999999
Q ss_pred HHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 307 AYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 307 AFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
||||+||++|++ .+|| .|+||++||+|||+++|+++
T Consensus 249 aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~ 284 (368)
T 2her_A 249 FYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTT
T ss_pred HHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHh
Confidence 999999999999 7899 99999999999999999875
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=3.3e-52 Score=398.34 Aligned_cols=228 Identities=31% Similarity=0.389 Sum_probs=196.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 018980 87 DPFSLVADELSILAKRLRSMVVAEV-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (348)
Q Consensus 87 d~~~~l~~eL~~v~~~l~~~~~~~~-~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~ 165 (348)
|+-..++++++.|++.|++.+.... +.+.++.+|.+.. ||||+||.|++++++++|++. +
T Consensus 12 ~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~-----------------~ 72 (293)
T 2j1p_A 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLA--GGKRVRPVLCIAACELVGGEE-----------------S 72 (293)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTS--CCCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3445677888999999999887654 5699999999974 599999999999999998642 2
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC-----CHHHHH---H
Q 018980 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVVT---L 235 (348)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~-----~~~v~~---~ 235 (348)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++|+..+++.. +..+++ .
T Consensus 73 ~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~ 152 (293)
T 2j1p_A 73 LAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGE 152 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHH
Confidence 5788999999999999999998 99999999999999999999999999999999999998753 233444 5
Q ss_pred HHHHH--HHHHHHHHHhccccCC--CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Q 018980 236 LATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 311 (348)
Q Consensus 236 la~~i--~~l~~GQ~ldl~~~~~--~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~ 311 (348)
+++++ ..++.||.+|+.+..+ ...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+
T Consensus 153 l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~ 232 (293)
T 2j1p_A 153 LAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVV 232 (293)
T ss_dssp HHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 5799999999987654 3568899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCccccCCCchhHHhcCcchHHHHHHHhh
Q 018980 312 DDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 347 (348)
Q Consensus 312 DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ale~ 347 (348)
||++|+++++ |.|+|++++++.
T Consensus 233 DDiLD~~~~~--------------K~T~p~l~gle~ 254 (293)
T 2j1p_A 233 DDILDVTKSS--------------KLTYPKLMGLEK 254 (293)
T ss_dssp HHHHHHHC----------------CCCHHHHHHHHH
T ss_pred HHHHHccCCc--------------cccHHHHHHHHH
Confidence 9999999875 899999998873
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=3.7e-53 Score=402.10 Aligned_cols=220 Identities=29% Similarity=0.392 Sum_probs=192.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 018980 88 PFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (348)
Q Consensus 88 ~~~~l~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~ 166 (348)
....++++++.|++.|++.+... +|.+.++.+|.+.. +|||+||.|++++++++|+... ..+.
T Consensus 6 l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~--gGKrlRp~Lvll~~~~~g~~~~--------------~~~~ 69 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIET--PGKLLRPLLLLTFTYSIDRRSI--------------MDPR 69 (285)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHCGGGG--------------GCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCCC--------------ChHH
Confidence 34688999999999999999887 88999999999985 5999999999999999986210 1136
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 018980 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 246 (348)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~G 246 (348)
+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||+|+++|+..+++.++ ++++.+++++..++.|
T Consensus 70 ~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~G 148 (285)
T 4fp4_A 70 ILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVG 148 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999999999999999999999999998754 9999999999999999
Q ss_pred HHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCC
Q 018980 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 326 (348)
Q Consensus 247 Q~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 326 (348)
|.+|+.+..+. ++++|||+||++||++|++++|++ +..+.+++||+++|+||||+||++|++++++ .||
T Consensus 149 Q~lDl~~~~~~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k 217 (285)
T 4fp4_A 149 QALDLEGERDK---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETK 217 (285)
T ss_dssp HHHHHTTCHHH---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHH
T ss_pred HHHHHhccccc---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccC
Confidence 99999875321 999999999999999999999999 8889999999999999999999999999865 688
Q ss_pred CchhHHhcC
Q 018980 327 GSLSDIRHV 335 (348)
Q Consensus 327 ~~~~Dl~~g 335 (348)
+.++||+++
T Consensus 218 ~~g~DI~e~ 226 (285)
T 4fp4_A 218 SIANEIGRY 226 (285)
T ss_dssp HHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 999999988
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=3.5e-47 Score=360.32 Aligned_cols=202 Identities=13% Similarity=0.165 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHhhhcchh-HHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHH
Q 018980 93 ADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171 (348)
Q Consensus 93 ~~eL~~v~~~l~~~~~~~~~~-l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA 171 (348)
+.--..+++.|.+.+....|. +.++.+|++..| |||+||.|++++++++|++.+ .+..+|
T Consensus 6 ~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A 66 (274)
T 3kra_B 6 AAIEADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMAAA 66 (274)
T ss_dssp HHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHHH
T ss_pred HHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHH
Confidence 333455788888888777775 999999999855 999999999999999988543 567899
Q ss_pred HHHHHHHHHHHhhcccC-CCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCH-------HHHHH---HHHHH
Q 018980 172 EITEMIHVASLLHDDVL-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTL---LATVV 240 (348)
Q Consensus 172 ~avEliH~AsLIHDDIi-D~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~-------~v~~~---la~~i 240 (348)
+++||||+||||||||+ |++++|||+||+|.+||++.|||+||+|+++|+..+++..++ .+++. +++++
T Consensus 67 ~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~ 146 (274)
T 3kra_B 67 AAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAG 146 (274)
T ss_dssp HHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHH
Confidence 99999999999999998 666689999999999999999999999999999999887552 34444 45555
Q ss_pred --HHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 018980 241 --EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 314 (348)
Q Consensus 241 --~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDl 314 (348)
..++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||.
T Consensus 147 G~~~~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 147 GPEGMISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp STTTHHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6799999999988765 689999999999999999999999999999999999999999999999999999998
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=9.2e-47 Score=357.30 Aligned_cols=198 Identities=12% Similarity=0.150 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhhhcchh-HHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 018980 97 SILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (348)
Q Consensus 97 ~~v~~~l~~~~~~~~~~-l~~~~~y~~~~g~~GKr~Rp~Lvll~~~alg~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 175 (348)
..+++.|.+.+....|. +.++.+|++..| |||+||.|++++++++|++.+ .+..+|+++|
T Consensus 15 ~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~aiE 75 (273)
T 3qkc_B 15 SDIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMAAAAAVH 75 (273)
T ss_dssp HHHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHH
Confidence 44677888887766665 999999999855 999999999999999988543 5678999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC------HHHHHHH---HHHH--HHHH
Q 018980 176 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL---ATVV--EHLV 244 (348)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~------~~v~~~l---a~~i--~~l~ 244 (348)
|||+||||||||+|+|+ |||+||+|.+||++.|||+||+|+++|+..+++..+ .++++.+ ++++ ..++
T Consensus 76 liH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~ 154 (273)
T 3qkc_B 76 LMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIV 154 (273)
T ss_dssp HHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999998 999999999999999999999999999999987653 3455554 4444 6789
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 245 ~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
.||.+|+.+.. ..+.++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||+++
T Consensus 155 ~GQ~lDl~~~~--~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~ 224 (273)
T 3qkc_B 155 EGQYHELGLNQ--LNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRS 224 (273)
T ss_dssp HHHHHHTTCCS--SCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhcCC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999998743 34555544577999999999999999999999999999999999999999999999985
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.67 E-value=0.67 Score=43.26 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 018980 240 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 318 (348)
Q Consensus 240 i~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~ 318 (348)
+..+..|..+|+... ...|++++..-+++=.++...+.+. +++..+++ ...++.++|+|||+.|=+.|+-
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~ 175 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDID 175 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhch
Confidence 467889998998654 2457888776555544444444332 33334443 3457899999999999887763
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=94.03 E-value=0.97 Score=43.29 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Q 018980 232 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 311 (348)
Q Consensus 232 v~~~la~~i~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~ 311 (348)
..+++.+.+..+..|-.+|+.. ...|++++..-+++-.|....+.+.+-..-...++. .......+.++|.|+|+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 4445566667788887778752 346888888777776666666666655432222232 334567899999999999
Q ss_pred Hhhhhc
Q 018980 312 DDVLDF 317 (348)
Q Consensus 312 DDllD~ 317 (348)
|=+.|+
T Consensus 188 NilRDv 193 (343)
T 3vj8_A 188 NIIRDY 193 (343)
T ss_dssp HHHHTH
T ss_pred HHHHHh
Confidence 877775
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=88.64 E-value=1.2 Score=41.36 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 018980 240 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 319 (348)
Q Consensus 240 i~~l~~GQ~ldl~~~~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g 319 (348)
+..++.|..+|+... ...|++++..-+++=.|+...+.+.+ ++..+.+ .....+.++|.|+|+.|=+.|+
T Consensus 110 ~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~~---~~~~~A~~lG~AlQltNilRDv-- 179 (293)
T 3acx_A 110 FYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPI---LSDHETH---QTYDVARRLGESLQLINILRDV-- 179 (293)
T ss_dssp HHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCCH---HHHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCcH---HHHHHHHHHHHHHHHHHHHHHH--
Confidence 567888988888653 24588888877766666655555443 2323312 3467899999999999977775
Q ss_pred CccccCCCchhHHhcCcchHHH
Q 018980 320 TSASLGKGSLSDIRHVIYLSLL 341 (348)
Q Consensus 320 ~~~~~GK~~~~Dl~~gk~T~pv 341 (348)
+.|++.|++-+|.
T Consensus 180 ---------~eD~~~gR~YLP~ 192 (293)
T 3acx_A 180 ---------GEDFENERIYFSK 192 (293)
T ss_dssp ---------HHHHHTTCCCSCH
T ss_pred ---------HHHHhCCcEEeCH
Confidence 3566667666664
No 49
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=82.99 E-value=1.5 Score=36.64 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhcc
Q 018980 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMT 252 (348)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~~~v~~~la~~i~~l~~GQ~ldl~ 252 (348)
=-|-+.--+.|||-++- ...-||+||++-+..+..||.......+..+++++.++.+.-..-.+
T Consensus 52 laIDTsmrv~d~i~~n~--------------K~riVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~ 115 (147)
T 3aqb_A 52 VAIDTSMRMQDFINEDN--------------KDSFVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRAT 115 (147)
T ss_dssp HHHHHHHHHGGGCCTTT--------------HHHHHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEeccHHHhhcccccCC--------------ccceEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566667777772221 12356999999999999999888899999999999999888665543
No 50
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=70.87 E-value=60 Score=30.82 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHh-CCCHHHHH--HHHHHHHH
Q 018980 229 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNS-CKAIALLA-GQTAEVAI--LAFDYGKN 303 (348)
Q Consensus 229 ~~~v~~~la~~i~~l~~GQ~ldl~~~~-~~~~s~~~yl~i~~~KTasLf~~a-~~~gaila-g~~~e~~~--~l~~~G~~ 303 (348)
.+.....+.+.+..++.+-..+..+.. ...+++++|+++-..-.|..+.+. +..+ ++ ..++++.+ .+.++-+.
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~--~g~~l~~~~~~~p~~~~l~~~ 252 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS--SGCELPDAVRKHPAYRRAALL 252 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH--HTCCCCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH--cCCCCCHHHHhChHHHHHHHH
Confidence 456677888888889988777765432 346899999998555554433222 1111 11 23444432 46667888
Q ss_pred HHHHHHHHHhhhhcc
Q 018980 304 LGLAYQLIDDVLDFT 318 (348)
Q Consensus 304 lGiAFQI~DDllD~~ 318 (348)
.+...-+.||+..|-
T Consensus 253 ~~~i~rL~NDi~S~~ 267 (382)
T 3kb9_A 253 SQEFAAWYNDLCSLP 267 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 51
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=61.82 E-value=17 Score=34.39 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHH
Q 018980 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVT 234 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~ 234 (348)
..+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++. .+.+.
T Consensus 234 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 313 (324)
T 3uca_A 234 KKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGNTEPLK 313 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3455556667788999999976 3467788889888899988888888888899888887753 34444
Q ss_pred HHHHH
Q 018980 235 LLATV 239 (348)
Q Consensus 235 ~la~~ 239 (348)
.+++.
T Consensus 314 ~la~~ 318 (324)
T 3uca_A 314 VLTMK 318 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 52
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=58.54 E-value=1.1e+02 Score=27.95 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=57.7
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHhccccCC-CCC-CHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCHHHHH--HH
Q 018980 223 ALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRC-SMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAI--LA 297 (348)
Q Consensus 223 ~La~l~~~~v~~~la~~i~~l~~GQ~ldl~~~~~-~~~-s~~~yl~i~~~KTasLf~~a~~~gailag-~~~e~~~--~l 297 (348)
.+...........+.+.+..++.+-..+..+... ..+ ++++|+++-..-.|..+...+..- .++. .++++.+ .+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~-~~g~~l~~~~~~~p~~ 204 (337)
T 1ps1_A 126 RTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAER-AGRFEVPHRVFDSAVM 204 (337)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHTSHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHH-HcCCCCCHHHHhChHH
Confidence 3344445667788888888998888777655433 357 899999875544444332221111 1121 2344332 45
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 018980 298 FDYGKNLGLAYQLIDDVLDFT 318 (348)
Q Consensus 298 ~~~G~~lGiAFQI~DDllD~~ 318 (348)
.++-+..+...-+.||+..|-
T Consensus 205 ~~l~~~~~~i~rL~NDl~S~~ 225 (337)
T 1ps1_A 205 SAMLQIAVDVNLLLNDIASLE 225 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 577888899999999999985
No 53
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=56.46 E-value=23 Score=33.35 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC
Q 018980 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~ 228 (348)
..+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 205 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 205 AKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455566677788999999977 456788888998889988888888888888888887764
No 54
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=54.94 E-value=20 Score=33.44 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHcc
Q 018980 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l 227 (348)
..+...-+.|=.|+-|.|||.| .++.+.|+.|+=..+|...|--.-.-+...|...|..+
T Consensus 209 ~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 209 GLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556667778899999976 34567788888888888888777777788887777655
No 55
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=53.37 E-value=16 Score=34.10 Aligned_cols=79 Identities=27% Similarity=0.257 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHH
Q 018980 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVT 234 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~ 234 (348)
..+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++. .+.+.
T Consensus 206 ~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 285 (304)
T 3lsn_A 206 KALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPLR 285 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3455556677788999999987 5788999999999999999988888889999988887753 33444
Q ss_pred HHHHH-HHHHHHH
Q 018980 235 LLATV-VEHLVTG 246 (348)
Q Consensus 235 ~la~~-i~~l~~G 246 (348)
.+++. +.+..+|
T Consensus 286 ~l~~~~~~R~~~~ 298 (304)
T 3lsn_A 286 ELARYIVERRSEG 298 (304)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHhcccc
Confidence 44433 3344444
No 56
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=50.88 E-value=24 Score=32.84 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC
Q 018980 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~ 228 (348)
..+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|.-..+-+..+|...|..++
T Consensus 201 ~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 201 EHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455556666778899999987 467788888888888887777777778888888887764
No 57
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=49.75 E-value=31 Score=32.49 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC
Q 018980 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 229 (348)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~ 229 (348)
.+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++.
T Consensus 213 ~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 213 RLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 455556677788899999976 3467888999988999998888888888888888877653
No 58
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=48.22 E-value=42 Score=31.13 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHH
Q 018980 170 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLL 236 (348)
Q Consensus 170 lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~~l 236 (348)
+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-++..|...|..++. .+.+..+
T Consensus 201 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~L~~l 280 (297)
T 3m0g_A 201 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEAASTLRAC 280 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44555667778899999988 3467788889988899988888888888888888877653 3444444
Q ss_pred HH
Q 018980 237 AT 238 (348)
Q Consensus 237 a~ 238 (348)
++
T Consensus 281 ~~ 282 (297)
T 3m0g_A 281 AR 282 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 59
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=47.82 E-value=28 Score=32.84 Aligned_cols=49 Identities=24% Similarity=0.059 Sum_probs=26.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHHH
Q 018980 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIA 344 (348)
Q Consensus 284 ailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~a 344 (348)
+.+.|.+.+....+...-+-+=.++-|.||+.|= +|+|.|++|+-..|.
T Consensus 59 ~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 59 ARLYGAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 3333544444445566678888999999999772 566666666655543
No 60
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=47.65 E-value=24 Score=33.37 Aligned_cols=61 Identities=30% Similarity=0.278 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccC
Q 018980 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (348)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~ 228 (348)
..+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|.-.-+-+..+|...|..++
T Consensus 245 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 245 QRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455556667788899999977 356677888888888888777777777888877776654
No 61
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=45.76 E-value=28 Score=32.62 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHHH
Q 018980 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 235 (348)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~~ 235 (348)
.+...-+-|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..++. .+.+..
T Consensus 214 ~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~ 293 (313)
T 3lom_A 214 ALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSKAAALIE 293 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 455556667788899999976 3567889999999999999988888888888888876643 344444
Q ss_pred HHHH
Q 018980 236 LATV 239 (348)
Q Consensus 236 la~~ 239 (348)
+++.
T Consensus 294 la~~ 297 (313)
T 3lom_A 294 LTKQ 297 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 62
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=43.78 E-value=31 Score=32.09 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHH
Q 018980 170 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLL 236 (348)
Q Consensus 170 lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~l~~-~~v~~~l 236 (348)
+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++. .+.+..+
T Consensus 214 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~l 293 (302)
T 3p8r_A 214 LDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNTEHLEEF 293 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 44455666778899999976 3456788888888888888888888888888888877653 3344434
Q ss_pred HH
Q 018980 237 AT 238 (348)
Q Consensus 237 a~ 238 (348)
++
T Consensus 294 ~~ 295 (302)
T 3p8r_A 294 AR 295 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=43.11 E-value=1.5e+02 Score=26.45 Aligned_cols=65 Identities=6% Similarity=0.057 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 018980 257 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 321 (348)
Q Consensus 257 ~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~ 321 (348)
..+++++|+++-..-.|..+...+..-++=-..+++..+.+.++-+..+...-+.||+..|--+.
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46799999997665555443322221111112466777778889999999999999999996543
No 64
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=37.50 E-value=75 Score=31.05 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=60.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCHHHHH--H
Q 018980 222 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--L 296 (348)
Q Consensus 222 ~~La~l~~~~v~~~la~~i~~l~~GQ~ldl~~~~-~~~~s~~~yl~i~~~KTasLf~~a~~~gailag--~~~e~~~--~ 296 (348)
..+.........+.+.+.+..++.+-..+..+.. +..+++++|+++ +..||....+.+ .....| .++++.+ .
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~ 322 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI--TDTVGGYELPADLHARPD 322 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG--HHHHHTCCCCHHHHTSHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH--HHHHcCCCCCHHHHhCch
Confidence 3344444556677788888888888776655432 346799999996 445543321111 122233 2344433 4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccC
Q 018980 297 AFDYGKNLGLAYQLIDDVLDFTG 319 (348)
Q Consensus 297 l~~~G~~lGiAFQI~DDllD~~g 319 (348)
+.++-+..+...-+.||+..|--
T Consensus 323 ~~~L~~~~~~i~rL~NDI~Sy~k 345 (433)
T 3v1v_A 323 MQRVIALAGNATTIVNDLYSYTK 345 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHH
Confidence 66778888999999999999863
No 65
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=36.49 E-value=47 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=23.1
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 285 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 285 ilag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 38 ~~~~~~~~~~~~~A~avEliH~asLiHDDi~D 69 (301)
T 2q80_A 38 HWLKVPEDKLQIIIEVTEMLHNASLLIDDIED 69 (301)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 34455655555566677778888999999987
No 66
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=35.73 E-value=32 Score=32.53 Aligned_cols=37 Identities=27% Similarity=0.153 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 280 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 280 ~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
|.+++.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D 97 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD 97 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 3334444455544455566677788889999999977
No 67
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=34.84 E-value=43 Score=30.98 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCC
Q 018980 290 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327 (348)
Q Consensus 290 ~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~ 327 (348)
+.+....+...-+-+=.+.-|.||+.|= +..+-|||
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~--s~~RRG~P 101 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ--HDQRRGIK 101 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT--CSBSSSSB
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCC
Confidence 3344445666677888899999999762 33334444
No 68
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=33.50 E-value=2.3e+02 Score=25.43 Aligned_cols=64 Identities=5% Similarity=0.053 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 018980 256 DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 319 (348)
Q Consensus 256 ~~~~s~~~yl~i~~~KTasLf~~a~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g 319 (348)
...+++++|+++-..-.|..+...+..-+.=-..+++..+...++-+..+...-+.||+..|--
T Consensus 163 ~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 163 ARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 3467999999887666665433322211111124667777788899999999999999999863
No 69
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=33.34 E-value=3e+02 Score=27.70 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHh-C-CCHHHHHHH---HHHHH
Q 018980 229 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDYGK 302 (348)
Q Consensus 229 ~~~v~~~la~~i~~l~~GQ~ldl~~~~-~~~~s~~~yl~i~~~KTasLf~~a~~~gaila-g-~~~e~~~~l---~~~G~ 302 (348)
...++..+.++...++.+-..+..+.. ...+|+++|++...--+|...-.+. +.++ . .+.+..+-+ -++-+
T Consensus 360 ~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~---~f~g~~~lt~e~~e~~~~~p~i~~ 436 (550)
T 3m00_A 360 RSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATT---SYLGMKSATEQDFEWLSKNPKILE 436 (550)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHH---HHHTCTTCCHHHHHHHHTCCHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHH---HHHcCCCCcHHHHHhhcccHHHHH
Confidence 345778888888899998777665532 3468999999987666554422221 1233 2 455554432 35778
Q ss_pred HHHHHHHHHHhhhhcc
Q 018980 303 NLGLAYQLIDDVLDFT 318 (348)
Q Consensus 303 ~lGiAFQI~DDllD~~ 318 (348)
..+...-+.||+..+-
T Consensus 437 ~~~~I~RL~NDI~S~k 452 (550)
T 3m00_A 437 ASVIICRVIDDTATYE 452 (550)
T ss_dssp HHHHHHHHHHHHHSHH
T ss_pred HHhhhheeeccchhHH
Confidence 8899999999999875
No 70
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=32.40 E-value=68 Score=29.92 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhcccCC------------CCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHc
Q 018980 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 226 (348)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~ 226 (348)
.+...-+.|=.|+-|.|||.| .++.+.|+.|+=..+|...|--.-.-++..|...|..
T Consensus 209 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 209 AYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555666778899999976 4577888889888888888777777777777777765
No 71
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=31.71 E-value=1.2e+02 Score=28.18 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhcccCC--CCCC--------CCCCCCcccccCHHHHHHHHHHHHHHHHHHHHc
Q 018980 169 CIAEITEMIHVASLLHDDVLD--DADT--------RRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 226 (348)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD--~s~~--------RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~La~ 226 (348)
.+...-+.|=.|+-|.|||.| .++. +.|++|+=..+|...|--.-.-++..|...|..
T Consensus 214 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 214 WLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566677788999999976 2221 678888888888888887778888888888877
No 72
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=30.61 E-value=58 Score=30.48 Aligned_cols=35 Identities=23% Similarity=0.072 Sum_probs=24.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 282 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 282 ~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
+++.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 49 ~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D 83 (330)
T 1wmw_A 49 YSALAHGAPLEAGLEAATALELFQNWVLVHDDIED 83 (330)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 33444455655555566677778888999999987
No 73
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=30.30 E-value=49 Score=30.53 Aligned_cols=34 Identities=15% Similarity=-0.016 Sum_probs=21.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 283 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 283 gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
++.+.|.+++....+...-+-+=.+.=|.||+.|
T Consensus 60 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D 93 (289)
T 2azj_A 60 FTVALGGDIKDSYGGALAIEILHSASLALCDIVD 93 (289)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344454544334455566777788889999976
No 74
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=30.00 E-value=86 Score=28.96 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhcccCC------CCCCCCCCCCcccccC--------HHHHHHHHHHHHHHHHHHHHccCC
Q 018980 169 CIAEITEMIHVASLLHDDVLD------DADTRRGIGSLNFVMG--------NKLAVLAGDFLLSRACVALASLKN 229 (348)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD------~s~~RRG~pt~h~~~G--------~~~AVlaGD~Lla~a~~~La~l~~ 229 (348)
.+...-+.|=.|+-|.|||.| +.+.+.|++|+=..|+ ...|.-...-+..+|...|..+++
T Consensus 191 ~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~ 265 (295)
T 3ipi_A 191 RFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRE 265 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555666778899999977 3456778888776666 555555556667777777776654
No 75
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=29.69 E-value=59 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=22.3
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 285 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 285 ilag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 53 ~~~~~~~~~~~~~A~avEliH~asLiHDDI~D 84 (340)
T 2e8v_A 53 RVMNLPKDQLAIVSQIVELLHNSSLLIDDIED 84 (340)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 34455555555566666777788899999977
No 76
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=28.26 E-value=67 Score=29.68 Aligned_cols=27 Identities=37% Similarity=0.306 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 290 TAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 290 ~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
+.+....+...-+-+=.+.-|.||+.|
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D 85 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVID 85 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 333334455666777788889999987
No 77
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=28.22 E-value=3e+02 Score=27.75 Aligned_cols=87 Identities=9% Similarity=0.058 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-CCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCHHHHHHH---HHHHHHHH
Q 018980 231 EVVTLLATVVEHLVTGETMQMTTS-SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLG 305 (348)
Q Consensus 231 ~v~~~la~~i~~l~~GQ~ldl~~~-~~~~~s~~~yl~i~~~KTasLf~~a~~~gailag-~~~e~~~~l---~~~G~~lG 305 (348)
.++..+.++...++.+-..+..+. ....+|+++|++...--+|...-+.... ..++. .+.+..+-+ -++-+..+
T Consensus 364 ~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~-~~mg~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 364 NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAY-FAVVQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHH-HHHCSSCCHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHH-HhcCCCCCHHHHHhcccchHHHHHHH
Confidence 356677788888888876666553 2457899999998666555432211111 11122 355554433 35778889
Q ss_pred HHHHHHHhhhhcc
Q 018980 306 LAYQLIDDVLDFT 318 (348)
Q Consensus 306 iAFQI~DDllD~~ 318 (348)
...-+.||+..+-
T Consensus 443 ~i~RL~NDi~S~~ 455 (555)
T 3n0f_A 443 HIFRLCNDLASAS 455 (555)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhccchhhh
Confidence 9999999999985
No 78
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=28.15 E-value=41 Score=31.97 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 282 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 282 ~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
+++.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 64 l~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D 98 (352)
T 3nf2_A 64 LSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD 98 (352)
T ss_dssp HHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444455555555566667788889999999988
No 79
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=27.08 E-value=37 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 290 TAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 290 ~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
+.+....+...-+-|=.++-|.||+.|
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D 89 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID 89 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc
Confidence 333334455666778889999999977
No 80
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=26.63 E-value=2.8e+02 Score=27.92 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHh-C--CCHHHHHHH---HHHH
Q 018980 229 NTEVVTLLATVVEHLVTGETMQMTTS-SDQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEVAILA---FDYG 301 (348)
Q Consensus 229 ~~~v~~~la~~i~~l~~GQ~ldl~~~-~~~~~s~~~yl~i~~~KTasLf~~a~~~gaila-g--~~~e~~~~l---~~~G 301 (348)
...++..+.++...++.+-..+..+. ....+|+++|++...--+|...-.. .+.++ | .+.+..+-+ .++-
T Consensus 364 ~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~---~~~~~mg~~lt~e~~e~~~~~p~i~ 440 (554)
T 3g4d_A 364 RQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI---TSFVGMGDIVTPETFKWAASDPKII 440 (554)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH---HHHHTSCTTSCHHHHHHHHTCCHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH---HHHHhcCCCCCHHHHHhccccHHHH
Confidence 34678888888999999977776653 2446899999998666555432211 11222 3 355555543 3678
Q ss_pred HHHHHHHHHHHhhhhccCCc
Q 018980 302 KNLGLAYQLIDDVLDFTGTS 321 (348)
Q Consensus 302 ~~lGiAFQI~DDllD~~g~~ 321 (348)
+..+...-+.||+..+-.+.
T Consensus 441 ~~~~~I~RL~NDI~S~k~E~ 460 (554)
T 3g4d_A 441 QASTIICRFMDDVAEHKFKH 460 (554)
T ss_dssp HHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcccchhhhhh
Confidence 88999999999999986443
No 81
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=25.50 E-value=70 Score=30.06 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=23.1
Q ss_pred HhC-CCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 286 LAG-QTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 286 lag-~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
++| .+.+....+...-+-+=.+.=|.||+.|
T Consensus 69 ~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D 100 (334)
T 3pko_A 69 FGNAATPAQLQAGAAAIEILHVGTLIHDDVID 100 (334)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC
Confidence 344 4666565666777888899999999977
No 82
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=25.06 E-value=58 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.028 Sum_probs=24.5
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHH
Q 018980 283 IALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFI 343 (348)
Q Consensus 283 gailag-~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ 343 (348)
++.+.| .+.+.+..+...-+-|=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 344445 44444445556677788899999999772 45566666554433
No 83
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=24.49 E-value=1e+02 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=22.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh--hh
Q 018980 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LD 316 (348)
Q Consensus 284 ailag~~~e~~~~l~~~G~~lGiAFQI~DDl--lD 316 (348)
+.+.|.+++....+...-+-+=.+.-|.||+ .|
T Consensus 58 ~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D 92 (284)
T 2ftz_A 58 GEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPID 92 (284)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC
Confidence 3334555555445666677778888999999 87
No 84
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=23.56 E-value=92 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.055 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCchhHHhcCcchHHHHH
Q 018980 291 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFI 343 (348)
Q Consensus 291 ~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~~gk~T~pvl~ 343 (348)
.+.+..+...-+-|=.+.=|.||+.| .+|+|.|++|+-.+|
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD------------~s~~RRG~pt~h~~f 127 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID------------SSDTRRGAPTVHRAV 127 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC------------CCCCCCCCcchhHHH
Confidence 45454555666778888999999987 256666666665543
No 85
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=23.17 E-value=48 Score=30.96 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=22.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018980 283 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (348)
Q Consensus 283 gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD 316 (348)
++.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D 88 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID 88 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 3333444434344556666777788899999987
No 86
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=23.05 E-value=99 Score=28.45 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=23.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh--hh
Q 018980 282 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LD 316 (348)
Q Consensus 282 ~gailag~~~e~~~~l~~~G~~lGiAFQI~DDl--lD 316 (348)
+++.+.|.+.+....+...-+-+=.+.=|.||+ .|
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D 90 (299)
T 1rqj_A 54 ATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD 90 (299)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc
Confidence 344455666555445566667777888899999 87
No 87
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=22.84 E-value=48 Score=31.19 Aligned_cols=40 Identities=20% Similarity=0.072 Sum_probs=24.7
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCC
Q 018980 286 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327 (348)
Q Consensus 286 lag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~ 327 (348)
+.|.+.+....+...-+-+=.+.-|.||+.| ++..+-|||
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLiHDDi~D--~s~~RRG~p 99 (342)
T 1wy0_A 60 AVGGDPLRAIYPAVAIELIHNYSLVHDDIMD--MDETRRGKP 99 (342)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH--TCCCSTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHCCccc--CCCCCCCCC
Confidence 3344444344555666777788999999988 333344554
No 88
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=21.41 E-value=1.1e+02 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh--hh
Q 018980 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LD 316 (348)
Q Consensus 284 ailag~~~e~~~~l~~~G~~lGiAFQI~DDl--lD 316 (348)
+.+.|.+++....+...-+-+=.+.-|.||+ .|
T Consensus 64 ~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD 98 (293)
T 2j1p_A 64 CELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD 98 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 3344555554445556666777788899998 66
No 89
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=20.42 E-value=47 Score=31.47 Aligned_cols=47 Identities=28% Similarity=0.115 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccCCCc
Q 018980 280 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 328 (348)
Q Consensus 280 ~~~gailag~~~e~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~ 328 (348)
|.+++.+.|.+.+....+...-+-+=.+.-|.||+.|= +..+-|||.
T Consensus 73 ~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D~--s~~RRG~pt 119 (345)
T 3oyr_A 73 TVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVDG--SQLRRGKVA 119 (345)
T ss_dssp HHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-----------CC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccCC--CCCCCCCcc
Confidence 33444455555444445666677888899999999772 333445553
No 90
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=20.08 E-value=5.6e+02 Score=25.49 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCHHHHHH---HHHHHHHHH
Q 018980 231 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAIL---AFDYGKNLG 305 (348)
Q Consensus 231 ~v~~~la~~i~~l~~GQ~ldl~~~~-~~~~s~~~yl~i~~~KTasLf~~a~~~gailag-~~~e~~~~---l~~~G~~lG 305 (348)
.++..+.++...++.+-..+..+.. ...+|+++|++....-.|...-+ +.+-..+++ .+.+..+- .-++-+..+
T Consensus 355 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~-~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~ 433 (543)
T 2ong_A 355 NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCML-THIFFRVTDSFTKETVDSLYKYHDLVRWSS 433 (543)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHH-HHHHHHHSSCCCHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHH-HHHHHHcCCCCCHHHHHHhcccHHHHHHHH
Confidence 4666777788888888666654433 34679999998755444332211 111112233 34444333 235667778
Q ss_pred HHHHHHHhhhhcc
Q 018980 306 LAYQLIDDVLDFT 318 (348)
Q Consensus 306 iAFQI~DDllD~~ 318 (348)
+..-+.||+..+-
T Consensus 434 ~i~RL~NDi~S~~ 446 (543)
T 2ong_A 434 FVLRLADDLGTSV 446 (543)
T ss_dssp HHHHHHHHHHSSH
T ss_pred HHHHHhcccchhh
Confidence 8888999998875
Done!