RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018980
(348 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 78.9 bits (193), Expect = 3e-17
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 81 DSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMA 140
D +QL+ + V L++ + + P + +Y +G GKR RP ++
Sbjct: 2 DFPQQLE--ACVKQANQALSRFIAPLPFQNTP-VVETMQYGALLG--GKRLRPFLVYATG 56
Query: 141 TALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR--GIG 198
V A E IH SL+HDD+ D G+
Sbjct: 57 HMFGVS-----------------TNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLP 99
Query: 199 SLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV----------VTLLATVVEHLVTGET 248
+ + G A+LAGD L + A L+ EV A+ + + G+
Sbjct: 100 TCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQA 159
Query: 249 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFD-YGKNLGLA 307
+ + + + +D + +KT +LI + + AL AG A+ D Y +++GLA
Sbjct: 160 LDL-DAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA 218
Query: 308 YQLIDDVLDFTGTSASLGKGSLSDIR 333
+Q+ DD+LD G +A+LGK +D +
Sbjct: 219 FQVQDDILDVVGDTATLGKRQGADQQ 244
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 66.3 bits (160), Expect = 6e-13
Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 24/222 (10%)
Query: 114 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 174 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 233
TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L + + V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 234 TLLA-TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 292
L ++E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 293 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334
+ LGL +Q+ DD + S K D+
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE 205
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 64.3 bits (155), Expect = 2e-12
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 25/250 (10%)
Query: 93 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLH 152
+ EL + +R+ ++ P+ + GK R + +L V + E
Sbjct: 2 SYELEKVKERIEQILSQFFPE---QIMKDLPLY--GKMLRVRLSILSFKNRGVEIGEDAI 56
Query: 153 DGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLA 212
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV A
Sbjct: 57 S----------------SLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAA 100
Query: 213 GDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKT 272
GD +L A + + N ++ V+ + E + S + + + Y++ K+
Sbjct: 101 GDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAE-LIEQLSRYKPITKEEYLRIVEGKS 159
Query: 273 ASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 332
+L + + ALL G+ E ++ G +G YQ+ DD++DF G G L
Sbjct: 160 GALFGLALQLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLK 216
Query: 333 RHVIYLSLLF 342
V L+
Sbjct: 217 NGVASFPLVT 226
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 62.4 bits (150), Expect = 1e-11
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 32/244 (13%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L + Y G GKR RP +LLL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSA 67
Query: 172 EITEMIHVASLLHDDVLDDADTRRG--IGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 229
EMIH SL+HDD+ + + + V G A+LAGD LL++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 230 TEVVTL--------LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 281
+A+ +V G+ + M S Q ++ KT +L++ +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDM-QSEGQPIDLETLEMIHKTKTGALLTFAVM 186
Query: 282 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH--VIYLS 339
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + Y+S
Sbjct: 187 SAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 246
Query: 340 LLFI 343
LL
Sbjct: 247 LLGK 250
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 60.0 bits (144), Expect = 1e-10
Identities = 53/284 (18%), Positives = 93/284 (32%), Gaps = 30/284 (10%)
Query: 73 SSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRF 131
S V+E + +E + F + +L + V + L +Y GK
Sbjct: 1 SPVVVER-EREEFVGFFPQIVRDL--TEDGIGHPEVGDAVARLKEVLQYNA---PGGKCN 54
Query: 132 RPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191
R ++ L+ + + + ALA + E+ L+ DD++D +
Sbjct: 55 RGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAFFLVADDIMDQS 104
Query: 192 DTRRGIGSLNFVMGNKLAVLAGDFLLSRA-----------CVALASLKNTEVVTLLATVV 240
TRRG G L + FLL + L + T T +
Sbjct: 105 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTEL 164
Query: 241 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAGQTAEVAILAF 298
++ T ++ S + Y YKTA A+ ++ + E A
Sbjct: 165 GQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAK 224
Query: 299 DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLF 342
+G +Q+ DD LD G A GK + ++
Sbjct: 225 AILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQ 268
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 27.0 bits (59), Expect = 3.2
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 152 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 198
+ + T + ++ + AS + D V+D +TR+ I
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIM 241
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 26.3 bits (57), Expect = 6.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 142 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 198
A+N+ + D +DA AT R Q+ + A + D V+ +DTRR I
Sbjct: 183 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.371
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,179,724
Number of extensions: 50709
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 11
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)