Query 018981
Match_columns 348
No_of_seqs 286 out of 930
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 3.1E-18 1.1E-22 130.6 4.6 56 203-261 6-61 (63)
2 1gnf_A Transcription factor GA 99.7 8.1E-18 2.8E-22 121.0 3.9 43 204-249 4-46 (46)
3 4gat_A Nitrogen regulatory pro 99.7 1.5E-17 5.3E-22 127.8 4.1 55 204-261 9-63 (66)
4 2vut_I AREA, nitrogen regulato 99.7 1.2E-17 4.1E-22 118.5 3.2 41 205-248 2-42 (43)
5 2kae_A GATA-type transcription 99.6 3.8E-16 1.3E-20 121.6 0.6 48 203-252 7-54 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 3.8E-15 1.3E-19 125.5 4.3 55 204-261 59-113 (115)
7 4hc9_A Trans-acting T-cell-spe 99.3 9.3E-13 3.2E-17 110.9 5.4 45 204-251 5-49 (115)
8 3ogk_Q JAZ1 incomplete degron 97.9 3.8E-06 1.3E-10 51.6 1.2 22 138-160 1-22 (22)
9 3ogl_Q JAZ1 incomplete degron 97.6 3.3E-05 1.1E-09 46.8 2.1 18 136-153 4-21 (21)
10 1pft_A TFIIB, PFTFIIBN; N-term 52.1 1.9 6.7E-05 30.0 -1.0 34 204-242 5-38 (50)
11 1dl6_A Transcription factor II 50.6 7.1 0.00024 28.4 1.8 34 204-242 11-44 (58)
12 2yrk_A Zinc finger homeobox pr 45.9 1.7 5.7E-05 32.1 -2.2 25 222-246 7-31 (55)
13 3cw2_K Translation initiation 33.3 13 0.00044 31.8 1.0 30 205-237 104-133 (139)
14 2owa_A Arfgap-like finger doma 30.1 33 0.0011 29.2 3.0 37 204-244 36-72 (138)
15 2f1l_A 16S rRNA processing pro 29.8 11 0.00038 33.4 0.0 11 17-27 7-17 (187)
16 2d74_B Translation initiation 29.0 14 0.00047 32.1 0.4 30 205-237 105-134 (148)
17 1nee_A EIF-2-beta, probable tr 28.7 14 0.00047 31.7 0.4 29 205-236 103-131 (138)
18 1k81_A EIF-2-beta, probable tr 27.7 7.2 0.00025 25.9 -1.2 28 206-237 2-30 (36)
19 2jrb_A ORF 1 protein; RNA bind 27.7 42 0.0014 26.8 3.0 25 74-100 46-70 (88)
20 2crr_A Stromal membrane-associ 27.7 41 0.0014 28.6 3.2 37 204-244 29-65 (141)
21 2iqj_A Stromal membrane-associ 27.4 38 0.0013 28.6 2.9 37 204-244 27-63 (134)
22 2crw_A ARF GAP 3, ADP-ribosyla 27.0 38 0.0013 29.3 2.9 37 204-244 29-65 (149)
23 2e29_A ATP-dependent RNA helic 24.1 22 0.00076 28.2 0.8 28 75-103 54-81 (92)
24 3cng_A Nudix hydrolase; struct 23.8 20 0.00069 30.3 0.5 32 204-237 3-34 (189)
25 3k7a_M Transcription initiatio 23.4 21 0.00073 34.0 0.7 34 204-241 21-55 (345)
26 2ds5_A CLPX, ATP-dependent CLP 23.3 34 0.0012 24.5 1.6 31 205-237 12-42 (51)
27 1twf_L ABC10-alpha, DNA-direct 23.2 12 0.00042 28.4 -0.8 29 201-236 25-53 (70)
28 2lvu_A Zinc finger and BTB dom 28.7 18 0.0006 19.7 0.0 17 229-245 3-19 (26)
29 2olm_A Nucleoporin-like protei 22.9 43 0.0015 28.5 2.4 36 204-243 25-60 (140)
30 3sub_A ADP-ribosylation factor 22.9 51 0.0018 29.0 3.0 37 204-244 22-58 (163)
31 2ivd_A PPO, PPOX, protoporphyr 22.9 17 0.00057 34.7 -0.2 13 16-28 4-16 (478)
32 2ctu_A Zinc finger protein 483 22.2 27 0.00093 23.7 0.9 40 204-246 18-57 (73)
33 2r51_A Vacuolar protein sortin 22.0 26 0.00089 33.9 1.0 15 17-31 4-18 (340)
34 1ovx_A ATP-dependent CLP prote 21.9 35 0.0012 25.9 1.4 33 204-238 18-50 (67)
35 1zm8_A Nuclease, endonuclease; 21.8 19 0.00066 33.2 0.0 12 16-27 2-13 (259)
36 2p57_A GTPase-activating prote 21.2 43 0.0015 28.8 2.1 37 204-244 37-73 (144)
37 3dwd_A ADP-ribosylation factor 20.8 53 0.0018 28.4 2.6 37 204-244 38-74 (147)
38 2b0o_E UPLC1; arfgap, structur 20.7 53 0.0018 29.8 2.7 37 204-244 42-78 (301)
39 3soo_A LINE-1 type transposase 20.6 69 0.0024 25.5 3.0 26 73-100 45-70 (88)
40 3h0g_L DNA-directed RNA polyme 20.5 20 0.00068 26.9 -0.2 41 196-243 13-53 (63)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.72 E-value=3.1e-18 Score=130.64 Aligned_cols=56 Identities=29% Similarity=0.530 Sum_probs=48.1
Q ss_pred cccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccccccccc
Q 018981 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (348)
Q Consensus 203 ~~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~ 261 (348)
....|+||++ +.||+||+||+|+ +|||||||+|++++++||++.....|..+++.+
T Consensus 6 ~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~ 61 (63)
T 3dfx_A 6 AGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 61 (63)
T ss_dssp TTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred CCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCC
Confidence 3679999999 5799999999996 999999999999999999998887777776654
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.69 E-value=8.1e-18 Score=121.01 Aligned_cols=43 Identities=44% Similarity=0.821 Sum_probs=40.0
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCcc
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k 249 (348)
...|+||++ +.||+||+||+|+ +|||||||||++++++||++|
T Consensus 4 ~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 578999999 5799999999996 999999999999999999875
No 3
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.68 E-value=1.5e-17 Score=127.85 Aligned_cols=55 Identities=35% Similarity=0.625 Sum_probs=48.5
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccccccccc
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~ 261 (348)
...|+||++ +.||+||+||+|. +|||||||||++++++||+++....|..+.+..
T Consensus 9 ~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 9 PTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence 579999999 5799999999996 999999999999999999999877776665543
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.68 E-value=1.2e-17 Score=118.52 Aligned_cols=41 Identities=44% Similarity=0.889 Sum_probs=38.3
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCc
Q 018981 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248 (348)
Q Consensus 205 ~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~ 248 (348)
..|++|++ +.||+||+||+|+ +|||||||+|++++++||++
T Consensus 2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 57999999 5799999999996 99999999999999999986
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.56 E-value=3.8e-16 Score=121.64 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=40.3
Q ss_pred cccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCcc
Q 018981 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR 252 (348)
Q Consensus 203 ~~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~ 252 (348)
....|+||++ +.||+||+||.+..+|||||||||++++++||+.....
T Consensus 7 ~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 7 KSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp -CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence 3689999999 47999999544444999999999999999999887644
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.53 E-value=3.8e-15 Score=125.55 Aligned_cols=55 Identities=29% Similarity=0.541 Sum_probs=48.1
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCccccccccccc
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~~~~~q~~~ 261 (348)
...|+||++ +.||+||+||+| .+|||||||||++|++.||++.....|..+.+++
T Consensus 59 ~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 59 GTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp TCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred cccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 579999999 469999999999 8999999999999999999999888888776654
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.33 E-value=9.3e-13 Score=110.95 Aligned_cols=45 Identities=44% Similarity=0.769 Sum_probs=40.5
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCCCccCc
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA 251 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~ 251 (348)
.+.|.||++ +.||+||+||+| .+|||||||||+.++..||+.+.+
T Consensus 5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpK 49 (115)
T 4hc9_A 5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPK 49 (115)
T ss_dssp -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCC
T ss_pred CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhccccccccccc
Confidence 679999999 579999999999 799999999999999999987654
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.86 E-value=3.8e-06 Score=51.55 Aligned_cols=22 Identities=59% Similarity=0.709 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhcccccceee....
Q 018981 138 RIASLVRFREKRKERSFEKKIRY.... 160 (348)
Q Consensus 138 R~aSL~Rf~eKRk~R~~~k~i~Y.... 160 (348)
|++||+||+||||+|..++ .||
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6899999999999998776 677
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=97.55 E-value=3.3e-05 Score=46.81 Aligned_cols=18 Identities=61% Similarity=0.695 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhhcc.....
Q 018981 136 SQRIASLVRFREKRKERS..... 153 (348)
Q Consensus 136 ~~R~aSL~Rf~eKRk~R~..... 153 (348)
.+|++||+||+||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 589999999999999974
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.12 E-value=1.9 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.551 Sum_probs=22.8
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~ 242 (348)
...|.+|+. +++-...-.| ...|..||+-|..+.
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCcccccc
Confidence 467999986 3444443345 789999998876543
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=50.63 E-value=7.1 Score=28.42 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=25.1
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~ 242 (348)
...|..|+. ++.....-.| .+.|..||+-+..+.
T Consensus 11 ~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 11 RVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDRV 44 (58)
T ss_dssp CCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCSC
T ss_pred cccCcCCCC----CceeEeCCCC-eEEeCCCCCEEeccc
Confidence 457999986 4466655566 799999999887543
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=45.87 E-value=1.7 Score=32.11 Aligned_cols=25 Identities=28% Similarity=0.777 Sum_probs=20.3
Q ss_pred cCCCCCchhchHhhHHHHhcCCCCC
Q 018981 222 RGPAGPRTLCNACGLMWANKGTLRD 246 (348)
Q Consensus 222 rGP~G~~tLCNACGl~~~~~~~~r~ 246 (348)
.+|+||++-|.-||..|.-+-.+++
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~slqD 31 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLSIRD 31 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSCHHH
T ss_pred CCCCCCCccccccCcccccccchhh
Confidence 5789988999999998887766555
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=33.30 E-value=13 Score=31.84 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=19.3
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhHH
Q 018981 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (348)
Q Consensus 205 ~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~ 237 (348)
-.|..|+.. .|-+-+.+ .---.-|+|||-.
T Consensus 104 VlC~~C~sP--dT~l~k~~-r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSL--DTILKKEK-KSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSS--CCCSCSSC-STTTSSCCC----
T ss_pred eECCCCCCc--CcEEEEeC-CeEEEEecCCCCC
Confidence 689999996 48788864 2224689999964
No 14
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=30.09 E-value=33 Score=29.21 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=31.6
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..||.. -|.|=.=.-| -.||-.|.-..+.-|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 5899999984 6999999999 89999998888776654
No 15
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=29.80 E-value=11 Score=33.37 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 018981 17 TEEHDVAQTPI 27 (348)
Q Consensus 17 ~~~~~~~~~p~ 27 (348)
||||+||++|+
T Consensus 7 ~~~~~~~~~~~ 17 (187)
T 2f1l_A 7 HHHHHHMPTPA 17 (187)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 45567788885
No 16
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.97 E-value=14 Score=32.07 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=20.8
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhHH
Q 018981 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (348)
Q Consensus 205 ~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~ 237 (348)
-.|..|+.. .|-+-+.+ .---.-|+|||-.
T Consensus 105 VlC~~C~sP--dT~L~k~~-r~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRD-RFHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCT--TCCCCBSS-SSBCCCCSSSCCC
T ss_pred EECCCCCCc--CcEEEEeC-CEEEEEecCCCCC
Confidence 579999996 47777754 2224679999853
No 17
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=28.73 E-value=14 Score=31.65 Aligned_cols=29 Identities=34% Similarity=0.660 Sum_probs=20.7
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhH
Q 018981 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (348)
Q Consensus 205 ~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl 236 (348)
-.|..|+.. .|-+-+.+ .---.-|+|||-
T Consensus 103 VlC~~C~sP--dT~l~k~~-r~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRP--DTRIIREG-RISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSC--SSCCEEET-TTTEEECSTTSC
T ss_pred EECCCCCCc--CcEEEEcC-CeEEEEccCCCC
Confidence 579999996 47787764 222467999984
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=27.71 E-value=7.2 Score=25.94 Aligned_cols=28 Identities=36% Similarity=0.863 Sum_probs=18.7
Q ss_pred ccccccccccCCCccccCCCCC-chhchHhhHH
Q 018981 206 ICQHCGISEKLTPAMRRGPAGP-RTLCNACGLM 237 (348)
Q Consensus 206 ~C~~Cg~~~~~TP~WRrGP~G~-~tLCNACGl~ 237 (348)
.|..|+-.+ |-+-+++ +. -.-|+|||-.
T Consensus 2 lC~~C~~pe--T~l~~~~--~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPD--TKIIKEG--RVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCE--EEEEEET--TEEEEEEETTTEE
T ss_pred CCcCCCCCC--cEEEEeC--CcEEEEhhcCCCc
Confidence 488899864 6677753 22 2459999954
No 19
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=27.71 E-value=42 Score=26.77 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.3
Q ss_pred CccceEEeccEEEEeCCCChhHHHHHH
Q 018981 74 TSELTVAYEGEVYVFPAVTPHKVQALL 100 (348)
Q Consensus 74 t~QLTIfY~G~V~VFDdVp~eKaqaIm 100 (348)
.+-|+++|+|++..|.+ .+|+++.+
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHHH
Confidence 56899999999999994 55655543
No 20
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.68 E-value=41 Score=28.61 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=31.4
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..|+.. -|.|=.=.-| -.||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 5799999984 7999998899 89999998888877754
No 21
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=27.44 E-value=38 Score=28.62 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=31.7
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..||.. -|.|=.=.-| -.||-.|.-..+.-|++
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 5899999984 6999999999 89999998888877754
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.95 E-value=38 Score=29.27 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=31.8
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..|+.. -|.|=.=.-| -.||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 5799999984 7999998899 89999998888877764
No 23
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=24.15 E-value=22 Score=28.22 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=24.6
Q ss_pred ccceEEeccEEEEeCCCChhHHHHHHHHh
Q 018981 75 SELTVAYEGEVYVFPAVTPHKVQALLLLL 103 (348)
Q Consensus 75 ~QLTIfY~G~V~VFDdVp~eKaqaImlLa 103 (348)
..||+.=++.-.||| ||.|.+++|+...
T Consensus 54 ~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 54 TRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp EEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred CeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 478888888999998 9999999999764
No 24
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=23.77 E-value=20 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.689 Sum_probs=23.3
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHH
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~ 237 (348)
.+.|..||.. .+.....|..+....|-.||.+
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCCc
Confidence 4689999984 4444556666677899999943
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=23.37 E-value=21 Score=34.00 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=22.5
Q ss_pred ccccccccccccCCC-ccccCCCCCchhchHhhHHHHhc
Q 018981 204 SRICQHCGISEKLTP-AMRRGPAGPRTLCNACGLMWANK 241 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP-~WRrGP~G~~tLCNACGl~~~~~ 241 (348)
...|.+||.. +| .-.+--.| .+.|..||+-..-+
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEcccc
Confidence 4579999873 22 33344456 78999999877543
No 26
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=23.32 E-value=34 Score=24.46 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=21.4
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhHH
Q 018981 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (348)
Q Consensus 205 ~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~ 237 (348)
.+|+-||.+.......=.|| | ..+|+-|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 58999998654444444565 3 4799999543
No 27
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.16 E-value=12 Score=28.43 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=19.6
Q ss_pred cccccccccccccccCCCccccCCCCCchhchHhhH
Q 018981 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (348)
Q Consensus 201 ~~~~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl 236 (348)
......|..||.. .... ++...-|..||-
T Consensus 25 ~~v~Y~C~~CG~~--~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSK--LSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCE--ECCC-----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCc--ceeC-----CCCCccCCCCCc
Confidence 3457899999984 1222 223468999997
No 28
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.66 E-value=18 Score=19.69 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.1
Q ss_pred hhchHhhHHHHhcCCCC
Q 018981 229 TLCNACGLMWANKGTLR 245 (348)
Q Consensus 229 tLCNACGl~~~~~~~~r 245 (348)
-.|+-||..|.....++
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 35888998888765543
No 29
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=22.91 E-value=43 Score=28.46 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=29.9
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~ 243 (348)
...|..||.. -|.|=.=.-| -.||-.|.-..+.-|+
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 5899999984 7999998899 8999999877665554
No 30
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=22.89 E-value=51 Score=28.99 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.2
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..|+.. -|.|=.=.-| -.||-.|.-..+.-|++
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 5799999984 7999998899 89999998777776654
No 31
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=22.86 E-value=17 Score=34.69 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCc
Q 018981 16 DTEEHDVAQTPIP 28 (348)
Q Consensus 16 ~~~~~~~~~~p~~ 28 (348)
||||||||+.+..
T Consensus 4 ~~~~~~~~~~~~~ 16 (478)
T 2ivd_A 4 HHHHHHHMPRTTG 16 (478)
T ss_dssp -------------
T ss_pred cccccccCCCCCC
Confidence 5677788887753
No 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.17 E-value=27 Score=23.69 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=27.6
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~ 246 (348)
...|..|+..-.....+++ ...-.|..||..|.....++.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 5789999976433334444 446789999999887665543
No 33
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=22.03 E-value=26 Score=33.95 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=3.3
Q ss_pred CCCCCCCCCCCcccC
Q 018981 17 TEEHDVAQTPIPIQN 31 (348)
Q Consensus 17 ~~~~~~~~~p~~~~~ 31 (348)
|||||||-+|.-|++
T Consensus 4 ~~~~~~~~~~~~~~~ 18 (340)
T 2r51_A 4 HHHHHHMGQSVEVEI 18 (340)
T ss_dssp ---------CEEEEE
T ss_pred cccccccCCCceEEE
Confidence 677888888864443
No 34
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=21.92 E-value=35 Score=25.95 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=22.3
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHH
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~ 238 (348)
..+|+-||.+.......=.|| | ..+||-|=..-
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 358999998654444444565 3 57999996544
No 35
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A {Anabaena SP} PDB: 2o3b_A*
Probab=21.82 E-value=19 Score=33.21 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 018981 16 DTEEHDVAQTPI 27 (348)
Q Consensus 16 ~~~~~~~~~~p~ 27 (348)
.||||+|||.||
T Consensus 2 ~~~~~~~~~~~~ 13 (259)
T 1zm8_A 2 AHHHHHHMQVPP 13 (259)
T ss_dssp ------------
T ss_pred CccccccccCCC
Confidence 478899999996
No 36
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.20 E-value=43 Score=28.81 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=31.4
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..||.. -|.|=.=.-| -.||-.|.-..+.-|++
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 5899999984 6999988889 88999999888877754
No 37
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=20.77 E-value=53 Score=28.38 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.4
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..|+.. -|.|=.=.-| -.||-.|.-..+.-|.+
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 5799999984 6999998899 89999999888776654
No 38
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=20.72 E-value=53 Score=29.84 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=30.3
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhHHHHhcCCC
Q 018981 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (348)
Q Consensus 204 ~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (348)
...|..|+.. -|.|-.-.-| ..+|-.|--..+.-|.+
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~~ 78 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGVR 78 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCCC
Confidence 5799999984 6999999999 89999997666655543
No 39
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=20.63 E-value=69 Score=25.48 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCccceEEeccEEEEeCCCChhHHHHHH
Q 018981 73 RTSELTVAYEGEVYVFPAVTPHKVQALL 100 (348)
Q Consensus 73 ~t~QLTIfY~G~V~VFDdVp~eKaqaIm 100 (348)
=.+.|+++|+|++..|+| .+|.++.+
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 45 CEVXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCCCEEEECSSSEEEESS--HHHHHHHH
T ss_pred ccceEEEEecCceeccCC--HHHccchh
Confidence 357899999999999995 45666643
No 40
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.53 E-value=20 Score=26.92 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCCCCcccccccccccccccCCCccccCCCCCchhchHhhHHHHhcCC
Q 018981 196 GSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (348)
Q Consensus 196 ~~~~~~~~~~~C~~Cg~~~~~TP~WRrGP~G~~tLCNACGl~~~~~~~ 243 (348)
+...+......|..||.. .... .+...-|.-||-+.-.|.+
T Consensus 13 ~~~~~~~v~Y~C~~Cg~~--~~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 13 NPPRPATMIYLCADCGAR--NTIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp ------CCCCBCSSSCCB--CCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred CCCCCCCeEEECCCCCCe--eecC-----CCCceECCCCCcEEEEEec
Confidence 334445567999999984 2322 2346889999976655443
Done!