Query 018982
Match_columns 348
No_of_seqs 207 out of 1220
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 6E-81 1.3E-85 629.0 30.6 274 74-347 1-275 (450)
2 PRK09314 bifunctional 3,4-dihy 100.0 2E-80 4.4E-85 605.7 27.2 237 107-347 2-238 (339)
3 PRK12485 bifunctional 3,4-dihy 100.0 1.2E-78 2.6E-83 599.9 28.3 239 107-347 2-240 (369)
4 COG0108 RibB 3,4-dihydroxy-2-b 100.0 5.4E-77 1.2E-81 542.6 22.9 201 107-310 2-202 (203)
5 PRK09319 bifunctional 3,4-dihy 100.0 3.9E-74 8.5E-79 587.9 28.2 238 108-347 5-244 (555)
6 PRK00910 ribB 3,4-dihydroxy-2- 100.0 2.8E-74 6.1E-79 533.0 23.6 202 107-310 13-214 (218)
7 PRK09311 bifunctional 3,4-dihy 100.0 9.6E-74 2.1E-78 571.0 27.4 239 107-347 3-241 (402)
8 PRK01792 ribB 3,4-dihydroxy-2- 100.0 1.5E-73 3.4E-78 526.8 23.9 201 107-309 12-212 (214)
9 PRK14019 bifunctional 3,4-dihy 100.0 5.4E-73 1.2E-77 559.9 28.3 239 107-347 2-240 (367)
10 PRK09318 bifunctional 3,4-dihy 100.0 1.5E-72 3.2E-77 559.3 25.9 226 111-347 1-226 (387)
11 PRK00014 ribB 3,4-dihydroxy-2- 100.0 7.2E-72 1.6E-76 519.6 24.6 200 109-310 19-218 (230)
12 TIGR00506 ribB 3,4-dihydroxy-2 100.0 1.4E-71 2.9E-76 509.8 22.4 197 108-306 2-199 (199)
13 PF00926 DHBP_synthase: 3,4-di 100.0 6.3E-72 1.4E-76 510.5 17.1 194 111-306 1-194 (194)
14 PRK03353 ribB 3,4-dihydroxy-2- 100.0 3.7E-68 7.9E-73 493.2 23.7 202 107-310 12-213 (217)
15 PRK05773 3,4-dihydroxy-2-butan 100.0 1.9E-66 4.1E-71 481.6 22.1 193 110-306 2-217 (219)
16 KOG1284 Bifunctional GTP cyclo 100.0 5E-58 1.1E-62 442.9 10.7 286 62-347 16-305 (357)
17 PRK08815 GTP cyclohydrolase; P 100.0 2.3E-50 4.9E-55 399.7 21.5 191 107-347 16-208 (375)
18 KOG3009 Predicted carbohydrate 58.0 32 0.00069 36.7 7.0 158 112-299 30-203 (614)
19 PF06794 UPF0270: Uncharacteri 57.8 20 0.00044 28.4 4.4 23 109-131 37-59 (70)
20 PRK08286 cbiC cobalt-precorrin 55.7 57 0.0012 31.1 7.8 43 253-299 144-189 (214)
21 COG1560 HtrB Lauroyl/myristoyl 55.1 35 0.00077 33.9 6.6 92 109-220 182-276 (308)
22 PRK00304 hypothetical protein; 51.1 8.7 0.00019 30.9 1.4 34 109-145 36-69 (75)
23 PRK04966 hypothetical protein; 48.5 21 0.00045 28.6 3.1 23 109-131 37-59 (72)
24 PRK08296 hypothetical protein; 36.2 34 0.00073 37.2 3.4 82 120-202 511-598 (603)
25 PF13263 PHP_C: PHP-associated 35.5 22 0.00047 26.2 1.3 20 283-302 5-24 (56)
26 PF02570 CbiC: Precorrin-8X me 35.0 1.3E+02 0.0028 28.3 6.6 56 230-299 118-176 (198)
27 COG1926 Predicted phosphoribos 34.6 91 0.002 29.9 5.6 58 111-168 106-185 (220)
28 PF04472 DUF552: Protein of un 32.6 48 0.001 25.6 2.9 22 106-127 7-28 (73)
29 PRK05954 precorrin-8X methylmu 30.8 1.7E+02 0.0037 27.7 6.7 43 253-299 133-178 (203)
30 PF08369 PCP_red: Proto-chloro 30.6 81 0.0018 22.6 3.6 23 282-304 21-43 (45)
31 COG3089 Uncharacterized protei 30.1 52 0.0011 26.2 2.6 21 109-129 37-57 (72)
32 PF09363 XFP_C: XFP C-terminal 28.2 28 0.00061 32.9 1.1 51 103-153 2-54 (203)
33 PRK11070 ssDNA exonuclease Rec 26.6 64 0.0014 34.8 3.5 94 110-219 58-151 (575)
34 PRK05782 bifunctional sirohydr 25.4 2.2E+02 0.0048 28.8 6.9 55 231-299 256-312 (335)
35 PRK06354 pyruvate kinase; Prov 25.4 1.3E+02 0.0027 32.8 5.5 82 120-202 494-581 (590)
36 cd03109 DTBS Dethiobiotin synt 25.2 1.4E+02 0.003 25.4 4.7 50 248-298 82-131 (134)
37 COG0461 PyrE Orotate phosphori 24.3 1.9E+02 0.0041 27.3 5.7 49 253-308 130-181 (201)
38 PF08584 Ribonuc_P_40: Ribonuc 24.2 4.6E+02 0.01 25.4 8.7 84 116-217 12-96 (284)
39 PF03437 BtpA: BtpA family; I 23.7 3.3E+02 0.0072 26.5 7.5 131 111-288 28-163 (254)
40 KOG1145 Mitochondrial translat 23.6 1.5E+02 0.0032 32.6 5.4 53 244-297 205-257 (683)
41 KOG0875 60S ribosomal protein 22.6 91 0.002 30.6 3.4 87 111-207 61-158 (264)
42 PRK05878 pyruvate phosphate di 21.8 3.5E+02 0.0077 29.1 7.9 115 138-264 382-510 (530)
43 PRK05849 hypothetical protein; 21.5 1E+02 0.0023 34.6 4.0 80 121-201 693-778 (783)
44 PLN02880 tyrosine decarboxylas 21.3 1.8E+02 0.004 30.4 5.6 50 248-297 223-273 (490)
45 TIGR01822 2am3keto_CoA 2-amino 20.4 2E+02 0.0044 28.0 5.5 34 264-297 170-204 (393)
46 PRK07505 hypothetical protein; 20.1 1.2E+02 0.0026 30.1 3.8 34 264-297 180-213 (402)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=6e-81 Score=629.04 Aligned_cols=274 Identities=79% Similarity=1.198 Sum_probs=266.8
Q ss_pred CccccccccccccccccCCCCCCCCCCCCCCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHH
Q 018982 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI 153 (348)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm 153 (348)
|+++||||.|+++|++++||.++.+.+++.+++.|++|++||++||+|+||||+||++||||||||+|||.+|++.|+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 57899999999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCC
Q 018982 154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH 233 (348)
Q Consensus 154 ~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGH 233 (348)
++|++|++|++|++++|++|+||+|+....|.+.++++||||||++.|++|||||.|||.|||.||+|.++|.||++|||
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH 160 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH 160 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence 99999999999999999999999998754577778899999999999999999999999999999999999999999999
Q ss_pred cCccccccCCccccCChhHHHHHHHHHcCCCCcEEEEEEecC-CCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcccc
Q 018982 234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312 (348)
Q Consensus 234 VfPL~a~~gGvl~R~GhTEAAVdLarLAGL~PaaVi~ell~d-dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~l 312 (348)
||||++++|||++|+|||||||||||||||.|++|||||+++ ||+|++.+++.+||++|+||+|+|+|||+||.+.+++
T Consensus 161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l 240 (450)
T PLN02831 161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240 (450)
T ss_pred ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999995 9999999999999999999999999999999999999
Q ss_pred ccccceeeccCCcccEEEEEEEeCCCCceEEEEEe
Q 018982 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347 (348)
Q Consensus 313 Verva~a~LPT~~G~F~~~~Yr~~~~g~EHVALVk 347 (348)
|++++++.+||+||+|++++|++..++.||+|||+
T Consensus 241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~ 275 (450)
T PLN02831 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVK 275 (450)
T ss_pred ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEe
Confidence 99999999999999999999999999999999986
No 2
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2e-80 Score=605.67 Aligned_cols=237 Identities=49% Similarity=0.738 Sum_probs=231.6
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.|++|++||++||+|+||||+||++||||||||+|||.+||+.||||++|++|++|++|++++|++|+||+|+.. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++|||||||+ +++|||||+|||+|||+||++.++|.||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~ 158 (339)
T PRK09314 80 NHETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPV 158 (339)
T ss_pred CCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCce
Confidence 8899999999998 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEEE
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVALV 346 (348)
+|||||+++||+||+++++.+||++|+||+|+|+|||+||++++++|+++++++|||+||+|++++|++. ++.||+|||
T Consensus 159 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv 237 (339)
T PRK09314 159 AVICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFK 237 (339)
T ss_pred EEEEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 889999998
Q ss_pred e
Q 018982 347 K 347 (348)
Q Consensus 347 k 347 (348)
|
T Consensus 238 ~ 238 (339)
T PRK09314 238 F 238 (339)
T ss_pred e
Confidence 7
No 3
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.2e-78 Score=599.95 Aligned_cols=239 Identities=49% Similarity=0.810 Sum_probs=235.1
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.|.+|++||++||+|+||||+||++||||||||+|||.+||+.|+||++|++|++|++|++++|++|+||+|++. |.+
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999986 888
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++|||||||+.|++|||||.|||.|||.||+|+++|.||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~ 159 (369)
T PRK12485 80 VFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPA 159 (369)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEEE
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVALV 346 (348)
+|+|||+++||+|++.+++.+||++|+||+|+|+||++||+.+|++|+++++++|||.||+|++++|++..++.||+|||
T Consensus 160 avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv 239 (369)
T PRK12485 160 SVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMV 239 (369)
T ss_pred EEEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 018982 347 K 347 (348)
Q Consensus 347 k 347 (348)
|
T Consensus 240 ~ 240 (369)
T PRK12485 240 M 240 (369)
T ss_pred e
Confidence 7
No 4
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-77 Score=542.62 Aligned_cols=201 Identities=60% Similarity=0.971 Sum_probs=197.0
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.+.+|++||++||+|+||||+||++||||||||+||+.+||+.|+||++|++|+||++|++++|++||||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++|+|||||||++ |+|||||.||+.|||.|+++++.+.||++|||||||++++|||++|+|||||+|||||||||.|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 99999999999987 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcc
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 310 (348)
+|||||+++||+||+.+++.+||++|+||+|+|+||++||.+.+
T Consensus 159 ~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 159 GVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998865
No 5
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.9e-74 Score=587.91 Aligned_cols=238 Identities=57% Similarity=0.937 Sum_probs=233.6
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCC
Q 018982 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (348)
Q Consensus 108 ~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~ 187 (348)
|++|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|++|++|+++||++|+||+|+.. |++.
T Consensus 5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~ 82 (555)
T PRK09319 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS 82 (555)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999986 8888
Q ss_pred CccceEEEeecc--CCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCC
Q 018982 188 LCTAFTVSVDAK--YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265 (348)
Q Consensus 188 ~~taFtVsVDa~--~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~P 265 (348)
++++||||||++ .|++|||||+|||.||+.||+|.++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P 162 (555)
T PRK09319 83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP 162 (555)
T ss_pred CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence 889999999987 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEE
Q 018982 266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAM 345 (348)
Q Consensus 266 aaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVAL 345 (348)
|+|||||+++||+||+++++.+||++|+|++|+|+|||+||++++++|++++++++||.||+|++++|++..++.||+||
T Consensus 163 aaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvAL 242 (555)
T PRK09319 163 AGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL 242 (555)
T ss_pred eEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 018982 346 VK 347 (348)
Q Consensus 346 Vk 347 (348)
||
T Consensus 243 vk 244 (555)
T PRK09319 243 VK 244 (555)
T ss_pred Ec
Confidence 96
No 6
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.8e-74 Score=532.97 Aligned_cols=202 Identities=46% Similarity=0.818 Sum_probs=197.4
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.|++|++||++||+|+||||+||++||||||||++||.+|+|.|+||++|++|++|++|++++|++||||+|+.. |++
T Consensus 13 ~~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 90 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNS 90 (218)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999976 888
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++||||||+++|++|||||.|||+|||+||++.++|.||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 91 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 170 (218)
T PRK00910 91 ANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPA 170 (218)
T ss_pred CCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCce
Confidence 88999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcc
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 310 (348)
+|||||+++||+|++++++++||++|+||+|+|+|||+||++++
T Consensus 171 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 171 GVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999877
No 7
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=9.6e-74 Score=571.04 Aligned_cols=239 Identities=62% Similarity=0.967 Sum_probs=234.3
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.|+.|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|++|++|++++|++|+||+|+.. |++
T Consensus 3 ~~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~ 80 (402)
T PRK09311 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQD 80 (402)
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999876 888
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++||||||++.|++|||||.|||.|||.||++++.|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 81 ~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Pa 160 (402)
T PRK09311 81 SHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPA 160 (402)
T ss_pred CCCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEEE
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVALV 346 (348)
+|+|||+++||+||+.+++.+||++|+||+|+++||++||.+.+.+|+++.++.+||+||+|++++|++..++.||+|||
T Consensus 161 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv 240 (402)
T PRK09311 161 GVICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240 (402)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 018982 347 K 347 (348)
Q Consensus 347 k 347 (348)
+
T Consensus 241 ~ 241 (402)
T PRK09311 241 K 241 (402)
T ss_pred e
Confidence 6
No 8
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.5e-73 Score=526.80 Aligned_cols=201 Identities=50% Similarity=0.818 Sum_probs=196.2
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.+++|++||++||+|+||||+||++||||||||++||.+|++.|+||++|++|++|++|++++|++||||+|++. |++
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 89 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTS 89 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++|||||||+.|++|||||.|||+|||.|+++.++|.||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHc
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 309 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~ 309 (348)
+|||||+++||+|++++++.+||++|+||+|+|+||++||+++
T Consensus 170 ~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999864
No 9
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=5.4e-73 Score=559.93 Aligned_cols=239 Identities=55% Similarity=0.901 Sum_probs=234.2
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.|.+|++||++||+|+||||+||++||||+|||+|||.+|++.|+||++|++|++|++|++++|++|+||+|+.. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999876 788
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++||||||++.|++|||||.||+.||+.|++++++|.||++|||||||++++||+++|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 159 (367)
T PRK14019 80 QYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPA 159 (367)
T ss_pred cCCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEEE
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVALV 346 (348)
+|+|||+++||+|++.+++.+||++|+||+|+++||++||.+++++|++++++++||+||+|++++|++..++.||+|||
T Consensus 160 avi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv 239 (367)
T PRK14019 160 AVICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALV 239 (367)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 018982 347 K 347 (348)
Q Consensus 347 k 347 (348)
+
T Consensus 240 ~ 240 (367)
T PRK14019 240 K 240 (367)
T ss_pred e
Confidence 6
No 10
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.5e-72 Score=559.28 Aligned_cols=226 Identities=35% Similarity=0.538 Sum_probs=216.2
Q ss_pred HHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCcc
Q 018982 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCT 190 (348)
Q Consensus 111 Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~t 190 (348)
+++||++||+|+||||+|+ +||||||||+||+.+||+.||||++|++|+||++|++++|++|+|++|+.+ . .++
T Consensus 1 ~~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~~---~--~~~ 74 (387)
T PRK09318 1 MEELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSN---G--GET 74 (387)
T ss_pred CHHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccCC---C--CCC
Confidence 3789999999999999997 899999999999999999999999999999999999999999999999843 2 358
Q ss_pred ceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCcEEEE
Q 018982 191 AFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 270 (348)
Q Consensus 191 aFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~PaaVi~ 270 (348)
+|||||||+. +|||||.|||.|||+||+ .++|.||++|||||||.+. ||++|+||||||||||||||+.|++|||
T Consensus 75 aftvsvd~~~--~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vic 149 (387)
T PRK09318 75 NFFIPVDYGT--GTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIV 149 (387)
T ss_pred CEEEEEcCCC--CCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEE
Confidence 9999999863 499999999999999999 5789999999999999875 7999999999999999999999999999
Q ss_pred EEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEEEe
Q 018982 271 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347 (348)
Q Consensus 271 ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVALVk 347 (348)
||+++||+||+++++.+||++|+||+++|+|||+||.++|++|++++++++||+||+|++++|++..++.||+||||
T Consensus 150 ei~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~ 226 (387)
T PRK09318 150 EILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVK 226 (387)
T ss_pred EEecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 11
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=7.2e-72 Score=519.57 Aligned_cols=200 Identities=48% Similarity=0.781 Sum_probs=195.7
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCCC
Q 018982 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKL 188 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~ 188 (348)
.+|++||++||+|+||||+||++||||||||++||.+|+|.|+||++|++|++|++|++++|++||||+|++. |.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999986 88889
Q ss_pred ccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCcEE
Q 018982 189 CTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 268 (348)
Q Consensus 189 ~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~PaaV 268 (348)
+++||||||+++|++|||||.||+.|||.|++++++|.||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcc
Q 018982 269 LCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (348)
Q Consensus 269 i~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 310 (348)
||||+++||+||+.+++++||++|+||+|+|+|||+|++++.
T Consensus 177 icEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~ 218 (230)
T PRK00014 177 LCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARG 218 (230)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998664
No 12
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=1.4e-71 Score=509.80 Aligned_cols=197 Identities=53% Similarity=0.892 Sum_probs=190.8
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCC
Q 018982 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (348)
Q Consensus 108 ~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~ 187 (348)
|.+|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|++|++|++++|++|+||+|++. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred CccceEEEeeccCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 188 LCTAFTVSVDAKYG-TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 188 ~~taFtVsVDa~~g-ttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
++++||+|||+.++ ++|||||.||++|||.|+++.++|.||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 89998888876666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHH
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 306 (348)
+|||||+|+||+|++.+++++||++|+||+|+|+|||+||
T Consensus 160 ~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999999999996
No 13
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=6.3e-72 Score=510.47 Aligned_cols=194 Identities=63% Similarity=0.984 Sum_probs=180.5
Q ss_pred HHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCcc
Q 018982 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCT 190 (348)
Q Consensus 111 Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~t 190 (348)
|++||++|++|+||||+||++||||||||++||.+|++.|+||++|++|++|++|++++|++||||+|++. |.+.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985 8888999
Q ss_pred ceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCcEEEE
Q 018982 191 AFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 270 (348)
Q Consensus 191 aFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~PaaVi~ 270 (348)
+|||||||+.|++|||||+|||+||++|++++++|.||++|||||||++++|||++|+||||||||||+|||+.|++|||
T Consensus 79 ~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ 158 (194)
T PF00926_consen 79 AFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVIC 158 (194)
T ss_dssp -BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEE
T ss_pred CeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHH
Q 018982 271 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (348)
Q Consensus 271 ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 306 (348)
||+++||+||+.+++++||++|+||+|+|+||++||
T Consensus 159 eil~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 159 EILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EBBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999999999999999999999999999999997
No 14
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=3.7e-68 Score=493.15 Aligned_cols=202 Identities=50% Similarity=0.885 Sum_probs=197.4
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.+.+|++||++||+|+||||+||++||||+|||+|||.+|++.++||++|++|++|++|++++|++|+||+|++. |.+
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~ 89 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTS 89 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++++||||||++.|++|||||.||+.|||.|+++.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 90 ~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~ 169 (217)
T PRK03353 90 QYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPA 169 (217)
T ss_pred CCCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcc
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 310 (348)
+|+|||+|+||+|++.+++.+||++|+||+|+++||++||+++|
T Consensus 170 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 170 GVLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998876
No 15
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=1.9e-66 Score=481.57 Aligned_cols=193 Identities=28% Similarity=0.420 Sum_probs=179.5
Q ss_pred cHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCC------
Q 018982 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKD------ 183 (348)
Q Consensus 110 ~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~------ 183 (348)
+|++||++||+|+||||+||++||||||||++|+.+|++.|+||++|++|+||++|++++|++||||+|++...
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ---CCCCCc--cceEEEeeccCCCCCCCChHHHHHHHHHHhcC--------CC----CCCCCCCCCCcCccccccCCccc
Q 018982 184 ---NEEKLC--TAFTVSVDAKYGTTTGVSANDRAKTVLALACR--------DS----KPEDFNRPGHIFPLKYREGGVLK 246 (348)
Q Consensus 184 ---n~~~~~--taFtVsVDa~~gttTGISA~DRA~TIr~LAdp--------~s----~~~Df~rPGHVfPL~a~~gGvl~ 246 (348)
|++.++ ++||||||| .|++|||||+|||+|||.||++ .. .|.||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~-~~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNH-VKTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcC-CCCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 334444 799999998 4999999999999999999983 22 27999999999999998 8999
Q ss_pred cCChhHHHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHH
Q 018982 247 RAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (348)
Q Consensus 247 R~GhTEAAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 306 (348)
|+||||||||||||||+.|++|||||+|++ .|++++++++||++|+||+|+|+||++|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 999999999999999999999999999974 59999999999999999999999999975
No 16
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-58 Score=442.85 Aligned_cols=286 Identities=52% Similarity=0.732 Sum_probs=275.3
Q ss_pred CCCcccccccccCccccccccccccc-cccCCCCCCCCCCCCCCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEE
Q 018982 62 NNKKYTAIETQSDTIGFGTLGAEITP-KTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIM 140 (348)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~ 140 (348)
.|.++..++.+++..+|+|+++++.| +.+.|++.|++++|++|+..|..|+.+|..+|.|++|+|+||++||||++|++
T Consensus 16 ~~~~~~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~ 95 (357)
T KOG1284|consen 16 TNEVSKPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLII 95 (357)
T ss_pred cccccCcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcce
Confidence 34444557789999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCccceEEEeeccCCCCCCCChHHHHHHHHHHhc
Q 018982 141 AASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC 220 (348)
Q Consensus 141 aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd 220 (348)
++...+++.++|+++|++|++|+.|..+.+.+|-|++|+....+.+.+.++|||+||+++|++||||++||+.|++.|++
T Consensus 96 a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s 175 (357)
T KOG1284|consen 96 AAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLAS 175 (357)
T ss_pred ecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhcc
Confidence 99999999999999999999999999999999999999987668888999999999999999999999999999999999
Q ss_pred -CCCCCCCCCCCCCcCccccc-cCCccccCChhHHHHHHHHHcCCCCcEEEEEEecC-CCCcCChhHHHHHHHhCCCcee
Q 018982 221 -RDSKPEDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 221 -p~s~~~Df~rPGHVfPL~a~-~gGvl~R~GhTEAAVdLarLAGL~PaaVi~ell~d-dG~mar~~~l~~fA~~h~L~iv 297 (348)
.++.|+||.+|||++|++++ +|||++|.||||++|+||+++|+.|.+++||++++ ||.|+++++++.||++|++|++
T Consensus 176 ~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~ 255 (357)
T KOG1284|consen 176 ARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLI 255 (357)
T ss_pred cccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCChh
Confidence 57889999999999999999 69999999999999999999999999999999998 9999999999999999999999
Q ss_pred eHHHHHHHHHHccccccccceeeccCCcccEEEEEEEeCCCCceEEEEEe
Q 018982 298 SIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347 (348)
Q Consensus 298 si~DLi~yr~~~e~lVerva~a~LPT~~G~F~~~~Yr~~~~g~EHVALVk 347 (348)
+++|+++|++++...|++++.+++||+|+.|..+||++..+++||++.++
T Consensus 256 ~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~ 305 (357)
T KOG1284|consen 256 SIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVE 305 (357)
T ss_pred hhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccc
Confidence 99999999999999999999999999999999999999999999999875
No 17
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=2.3e-50 Score=399.74 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=174.7
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
++.+|++||++||+|+||||+||++|| |||+|||.+||+.+|||++|++|++|++|++++|++||||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 467899999999999999999999994 9999999999999999999999999999999999999999993
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.||++|. || +.||+.||+.++++ .+.||++|||||| ||||||||||||.||
T Consensus 86 ----~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Pa 136 (375)
T PRK08815 86 ----GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPA 136 (375)
T ss_pred ----CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCce
Confidence 1333332 34 47999999999998 5899999999996 999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHH-HccccccccceeeccCCc-ccEEEEEEEeCCCCceEEE
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRR-KRDRLVELAAAAPIPTMW-GPFKAHCYRSLLDGIEHIA 344 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~-~~e~lVerva~a~LPT~~-G~F~~~~Yr~~~~g~EHVA 344 (348)
+|||||+++|+ + +|| +|++++|+|||+||. +++.+|++++++++||+| |+|++++|++..++.||+|
T Consensus 137 avi~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~A 205 (375)
T PRK08815 137 MVAVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVA 205 (375)
T ss_pred EEEEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEE
Confidence 99999999743 2 676 999999999999998 889999999999999995 9999999999999999999
Q ss_pred EEe
Q 018982 345 MVK 347 (348)
Q Consensus 345 LVk 347 (348)
|||
T Consensus 206 Lv~ 208 (375)
T PRK08815 206 IVV 208 (375)
T ss_pred EEe
Confidence 997
No 18
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=58.01 E-value=32 Score=36.68 Aligned_cols=158 Identities=25% Similarity=0.347 Sum_probs=89.9
Q ss_pred HHHHHHHHCCcEEEEEeCCCCCCceeEEEEc-----CCCCHHHHHH----------HHHhcCCceEeecCHHHHHhcCCC
Q 018982 112 SEAIEDIRQGKLVIVVDDEDRENEGDLIMAA-----SLVTPEAMAF----------IVRHGTGIVCVSMKGEDLERLELP 176 (348)
Q Consensus 112 e~Ai~aLr~G~pVvV~Dde~REnEgdLV~aA-----e~~T~e~vaf----------m~~~a~Glicvalt~~ra~~LgLp 176 (348)
.+.-++|..|+|||.... -++.-+ -..|+-.+.. -+....|.+|+-++++.+..|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 356788999999998652 111111 1111222222 233446999999999999999986
Q ss_pred ccccCCCCCCCCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChh-HHHH
Q 018982 177 LMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT-EASV 255 (348)
Q Consensus 177 ~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhT-EAAV 255 (348)
..... .-....-++++.+--. |-||+-. |+. +|.. ....-|..||- |||-+-+-|+ .++-
T Consensus 103 g~~~~--kvsrRD~~~v~i~rlv-ggTtvaa------Tm~-iA~~-~gI~vfaTggi--------ggvhr~An~smdisa 163 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIVRLV-GGTTVAA------TMI-IAHA-AGIVVFATGGI--------GGVHRGANQSMDISA 163 (614)
T ss_pred Ccccc--ccccccccccceeeec-CCcchhh------hhh-hccc-ceEEEEecCCc--------chhhhccccccchhh
Confidence 54211 1223345677777653 4444432 211 1211 11233666662 4544433323 2455
Q ss_pred HHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeH
Q 018982 256 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (348)
Q Consensus 256 dLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi 299 (348)
||-.| |-.|.+|+|+=|.. ..+.+...+|-+.++.++++.
T Consensus 164 dl~el-grtpvavv~agvks---iLdip~tle~letq~V~vvtl 203 (614)
T KOG3009|consen 164 DLTEL-GRTPVAVVSAGVKS---ILDIPKTLEYLETQGVVVVTL 203 (614)
T ss_pred hhhhh-cCCcceEEecchhh---hccchhhhhhhccccEEEEEe
Confidence 55555 67899999876543 556677778888888888765
No 19
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=57.79 E-value=20 Score=28.40 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCC
Q 018982 109 ASISEAIEDIRQGKLVIVVDDED 131 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dde~ 131 (348)
.+|++....|++|+.||++|.+.
T Consensus 37 ~kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 37 EKVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TTT
T ss_pred HHHHHHHHHHHcCCEEEEECCcc
Confidence 46999999999999999998544
No 20
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=55.75 E-value=57 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHHHHH---cCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeH
Q 018982 253 ASVDLAVL---AGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (348)
Q Consensus 253 AAVdLarL---AGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi 299 (348)
|-..|++| .+..|+.|+.-=+.-=| ..+.++.-.+.++|.|++
T Consensus 144 AL~~l~~li~~g~~~PalVIG~PVGFV~----AaEsKe~L~~~~iP~It~ 189 (214)
T PRK08286 144 ALFRLLEMVEHGQLQVDAVVGVPVGFVG----AAESKEALTESDLPAIAA 189 (214)
T ss_pred HHHHHHHHHHcCCCCCcEEEEeCCcccc----HHHHHHHHHhCCCCEEEE
Confidence 55666666 36899999985554322 244555556679999975
No 21
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=55.07 E-value=35 Score=33.93 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHCCcEE-EEEeCCCCCCceeE--EEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCC
Q 018982 109 ASISEAIEDIRQGKLV-IVVDDEDRENEGDL--IMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE 185 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pV-vV~Dde~REnEgdL--V~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~ 185 (348)
..|...+++||+|+.| ++.|.+-.++++.. .|+-+..|.-..+.|++.++-.| ++ ..... |.
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~v-ip------------~~~~r--~~ 246 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAV-VP------------VFPVR--NP 246 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCE-EE------------EEEEE--eC
Confidence 4689999999999999 45454445566633 56888999999999999875333 22 22111 11
Q ss_pred CCCccceEEEeeccCCCCCCCChHHHHHHHHHHhc
Q 018982 186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC 220 (348)
Q Consensus 186 ~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd 220 (348)
.+..|++.|.+ ..++-...|=..+.+++.+
T Consensus 247 --~g~~y~l~i~p---~~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 247 --DGSGYTLHIHP---PMTDDPSEDVEADAQRMND 276 (308)
T ss_pred --CCCeEEEEEec---cccCCCCCCHHHHHHHHHH
Confidence 24468888876 2244444455556665554
No 22
>PRK00304 hypothetical protein; Provisional
Probab=51.14 E-value=8.7 Score=30.90 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCC
Q 018982 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~ 145 (348)
.+|++...+|++|+.||++|... |..=+++-+..
T Consensus 36 ~kv~qv~~qL~~G~~vIvfse~~---es~~i~~k~~~ 69 (75)
T PRK00304 36 TRVLRVRQALTKGQAVILFDPES---QQCQLMLKHDV 69 (75)
T ss_pred HHHHHHHHHHHcCCEEEEECCCc---ceeeeeeHhhc
Confidence 57899999999999999997543 44334444433
No 23
>PRK04966 hypothetical protein; Provisional
Probab=48.46 E-value=21 Score=28.56 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCC
Q 018982 109 ASISEAIEDIRQGKLVIVVDDED 131 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dde~ 131 (348)
.+|++....|++|+.||++|...
T Consensus 37 ~kv~qv~~qL~~G~~viv~se~~ 59 (72)
T PRK04966 37 QKVADVKRQLQSGEAVLVWSELH 59 (72)
T ss_pred HHHHHHHHHHHcCCEEEEECCCC
Confidence 47999999999999999998544
No 24
>PRK08296 hypothetical protein; Provisional
Probab=36.25 E-value=34 Score=37.24 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCcEEEEEeCCC-CCCceeEEEEcCCCCHHHHHHHHHhcCCceEeec-----CHHHHHhcCCCccccCCCCCCCCccceE
Q 018982 120 QGKLVIVVDDED-RENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSM-----KGEDLERLELPLMVNHKDNEEKLCTAFT 193 (348)
Q Consensus 120 ~G~pVvV~Dde~-REnEgdLV~aAe~~T~e~vafm~~~a~Glicval-----t~~ra~~LgLp~m~~~~~n~~~~~taFt 193 (348)
.|+..||.+.++ .+-+..-|+.++..+|..+..| ...+|+|+-.= ..-.|+.+|+|..+..............
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~ 589 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGEILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQR 589 (603)
T ss_pred EEEEEEeCCHHHHHhccCceEEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCE
Confidence 455556554332 1222334666778888888887 66778877543 2337899999988875333444567789
Q ss_pred EEeeccCCC
Q 018982 194 VSVDAKYGT 202 (348)
Q Consensus 194 VsVDa~~gt 202 (348)
|+||...|+
T Consensus 590 V~vDg~~G~ 598 (603)
T PRK08296 590 LRVDGTKGV 598 (603)
T ss_pred EEEECCCCE
Confidence 999976553
No 25
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=35.47 E-value=22 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHHhCCCceeeHHHH
Q 018982 283 PKLRQFAQTENLKIISIADL 302 (348)
Q Consensus 283 ~~l~~fA~~h~L~ivsi~DL 302 (348)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 56889999999999999883
No 26
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=34.96 E-value=1.3e+02 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCCCcCccccccCCccccCChhHHHHHHHHH---cCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeH
Q 018982 230 RPGHIFPLKYREGGVLKRAGHTEASVDLAVL---AGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (348)
Q Consensus 230 rPGHVfPL~a~~gGvl~R~GhTEAAVdLarL---AGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi 299 (348)
.+|-||.+.-.| | |-..|++| .+..|+.|+.-=+.- -.-.+.++.-.+.++|.|++
T Consensus 118 ~~~~I~vIGNAP---------T-AL~~ll~li~~~~~~PalVIg~PVGF----V~A~ESKe~L~~~~vP~I~~ 176 (198)
T PF02570_consen 118 LPGAIVVIGNAP---------T-ALFELLELIEEGGVRPALVIGVPVGF----VGAAESKEALMQSGVPYITV 176 (198)
T ss_dssp TTTCEEEESS-H---------H-HHHHHHHHHHTTT-TTSEEEE---SS----SSHHHHHHHHHHSTS-EEEE
T ss_pred cCCcEEEEeCcH---------H-HHHHHHHHHHhcCCCCcEEEECCCcc----cCcHHHHHHHHhCCCCEEEE
Confidence 567777665544 2 55555555 699999999855443 33466666667779998864
No 27
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=34.61 E-value=91 Score=29.91 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=42.4
Q ss_pred HHHHHHHHHC--------CcEEEEEeCCC-------------CC-CceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHH
Q 018982 111 ISEAIEDIRQ--------GKLVIVVDDED-------------RE-NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168 (348)
Q Consensus 111 Ie~Ai~aLr~--------G~pVvV~Dde~-------------RE-nEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ 168 (348)
+++=+..+|. |+-|||+||-- |- .-.++++|.--+.++....|..++-+++|+.++..
T Consensus 106 l~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 106 LLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred HHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 4555555554 56789998631 11 12367888888889999999999999999999875
No 28
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=32.59 E-value=48 Score=25.64 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=16.9
Q ss_pred CCcccHHHHHHHHHCCcEEEEE
Q 018982 106 KGFASISEAIEDIRQGKLVIVV 127 (348)
Q Consensus 106 ~~~~~Ie~Ai~aLr~G~pVvV~ 127 (348)
..|+.++++.++|++|++|++-
T Consensus 7 ~~~~D~~~i~~~l~~g~~Vivn 28 (73)
T PF04472_consen 7 KSFEDAREIVDALREGKIVIVN 28 (73)
T ss_dssp SSGGGHHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHHHHHcCCEEEEE
Confidence 3577899999999999999873
No 29
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=30.84 E-value=1.7e+02 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=28.2
Q ss_pred HHHHHHHHc---CCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeH
Q 018982 253 ASVDLAVLA---GLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (348)
Q Consensus 253 AAVdLarLA---GL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi 299 (348)
|-..|++|. +..|+.|+.-=+.-= ...+.++...+.++|.|++
T Consensus 133 AL~~l~eli~~g~~~PalVIg~PVGFV----~A~ESKe~L~~~~iP~It~ 178 (203)
T PRK05954 133 ALLALCQQIRAGRVKPSLVIGVPVGFV----SVVEAKQALAQLDVPQIRV 178 (203)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCccc----CHHHHHHHHHhCCCCEEEE
Confidence 666777763 589999887554432 2345555556788999875
No 30
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=30.56 E-value=81 Score=22.64 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=17.8
Q ss_pred hhHHHHHHHhCCCceeeHHHHHH
Q 018982 282 LPKLRQFAQTENLKIISIADLIR 304 (348)
Q Consensus 282 ~~~l~~fA~~h~L~ivsi~DLi~ 304 (348)
+..+++||+++|...||.+.+.+
T Consensus 21 r~~~E~~Ar~~G~~~IT~e~v~~ 43 (45)
T PF08369_consen 21 RDAAEKYARERGYDEITVEVVDA 43 (45)
T ss_dssp HHHHHHHHHHCT-SEE-HHHHHH
T ss_pred HHHHHHHHHHcCCCeECHHHHHh
Confidence 35789999999999999988754
No 31
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.07 E-value=52 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHCCcEEEEEeC
Q 018982 109 ASISEAIEDIRQGKLVIVVDD 129 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dd 129 (348)
.+++++...|++|+.|||++.
T Consensus 37 qkv~~~r~qlq~GeaVivwse 57 (72)
T COG3089 37 QKVADVRRQLQSGEAVIVWSE 57 (72)
T ss_pred HHHHHHHHHHhcCceEEEecc
Confidence 579999999999999999974
No 32
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=28.23 E-value=28 Score=32.92 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=34.0
Q ss_pred CCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEc--CCCCHHHHHHH
Q 018982 103 RPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAA--SLVTPEAMAFI 153 (348)
Q Consensus 103 ~~~~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aA--e~~T~e~vafm 153 (348)
.|...|-++++|++..++|-.|.=.-+.+...|.|+|+|+ +..|-|.++..
T Consensus 2 qp~pqwls~eeA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~lAA~ 54 (203)
T PF09363_consen 2 QPRPQWLSMEEARAHCAAGAGIWDWASTDQGEEPDVVLACAGDVPTLEVLAAA 54 (203)
T ss_dssp SEEEE-S-HHHHHHHHHHSEEE-CCC-SSSTTT-SEEEEEESHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHcCCeEEEeccCCCCCCCCEEEEecCchhhHHHHHHH
Confidence 4667888999999999999988755555555678887755 55666666643
No 33
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=26.61 E-value=64 Score=34.83 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=56.9
Q ss_pred cHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCc
Q 018982 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLC 189 (348)
Q Consensus 110 ~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~ 189 (348)
.+++..+++.+|+.|+|+-|-| .|=|-++ .=.+.+|.+.+---+...++.+.-+--||....-. .-...+
T Consensus 58 a~~ri~~ai~~~e~I~I~gDyD----~DGitst----ail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~--~~~~~~ 127 (575)
T PRK11070 58 AVELLYNALREGTRIIVVGDFD----ADGATST----ALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVD--QAHARG 127 (575)
T ss_pred HHHHHHHHHHCCCEEEEEEecC----ccHHHHH----HHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHH--HHHhcC
Confidence 4666777899999999997766 3333222 22355666654224666666655555565432211 111135
Q ss_pred cceEEEeeccCCCCCCCChHHHHHHHHHHh
Q 018982 190 TAFTVSVDAKYGTTTGVSANDRAKTVLALA 219 (348)
Q Consensus 190 taFtVsVDa~~gttTGISA~DRA~TIr~LA 219 (348)
...-|+|| .||++.+...-++.+.
T Consensus 128 ~~LiItvD------~Gi~~~e~i~~a~~~g 151 (575)
T PRK11070 128 AQLIVTVD------NGISSHAGVAHAHALG 151 (575)
T ss_pred CCEEEEEc------CCcCCHHHHHHHHHCC
Confidence 67999999 5899888777666653
No 34
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=25.42 E-value=2.2e+02 Score=28.82 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCCcCccccccCCccccCChhHHHHHHHHHc--CCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeH
Q 018982 231 PGHIFPLKYREGGVLKRAGHTEASVDLAVLA--GLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (348)
Q Consensus 231 PGHVfPL~a~~gGvl~R~GhTEAAVdLarLA--GL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi 299 (348)
||-||.+.-.| -|-..|++|. +..|+.|+.-=+.- -...+.++...+.++|.|++
T Consensus 256 ~~~i~viGnAP----------TAL~~l~~li~~~~~palvig~PVGF----V~a~esKe~L~~~~vP~I~~ 312 (335)
T PRK05782 256 GGKVVVIGNAP----------TALIETLKLVKEGVDIPFIVATPPGF----TNAKEVKEALIESGIPSVVL 312 (335)
T ss_pred CCCEEEEeCcH----------HHHHHHHHHHhcCCCCcEEEEeCCcc----cCHHHHHHHHHhCCCCEEEE
Confidence 45577555433 2556666664 88999988754443 22345555556778999875
No 35
>PRK06354 pyruvate kinase; Provisional
Probab=25.38 E-value=1.3e+02 Score=32.80 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCCC-CCceeEEEEcCCCCHHHHHHHHHhcCCceEeecC-----HHHHHhcCCCccccCCCCCCCCccceE
Q 018982 120 QGKLVIVVDDEDR-ENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFT 193 (348)
Q Consensus 120 ~G~pVvV~Dde~R-EnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt-----~~ra~~LgLp~m~~~~~n~~~~~taFt 193 (348)
.|..+++.+.++- +-+..-|+-++..+|+.+..| +...|+++-.=. .-.|+.||+|..+...+..........
T Consensus 494 ~G~v~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~ 572 (590)
T PRK06354 494 SGKARVAKTAAEVAKVNEGDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQI 572 (590)
T ss_pred cceEEEeCChHhhccCCCCeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCE
Confidence 5555554443331 122335677788999888775 778888876432 237899999998865322333455678
Q ss_pred EEeeccCCC
Q 018982 194 VSVDAKYGT 202 (348)
Q Consensus 194 VsVDa~~gt 202 (348)
|+||...|.
T Consensus 573 v~vDg~~G~ 581 (590)
T PRK06354 573 ITVDAARGV 581 (590)
T ss_pred EEEECCCCE
Confidence 999975543
No 36
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=25.20 E-value=1.4e+02 Score=25.38 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceee
Q 018982 248 AGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 298 (348)
Q Consensus 248 ~GhTEAAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivs 298 (348)
-.|+-..+..++..|+...+++....+++-.+ .......+.+..++|++.
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 45788999999999999999998876653222 224567788888888764
No 37
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=24.25 E-value=1.9e+02 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCC---CceeeHHHHHHHHHH
Q 018982 253 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTEN---LKIISIADLIRYRRK 308 (348)
Q Consensus 253 AAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~---L~ivsi~DLi~yr~~ 308 (348)
-|++..|-+|...++|+|-+- |...+.++-+++| .++++++||+.+...
T Consensus 130 eai~~l~~~G~~V~gv~~ivD-------R~~~~~~~~~~~g~~~~sl~tl~dl~~~~~~ 181 (201)
T COG0461 130 EAVEALREAGAEVVGVAVIVD-------RQSGAKEVLKEYGVKLVSLVTLSDLLEVLYE 181 (201)
T ss_pred HHHHHHHHcCCeEEEEEEEEe-------cchhHHHHHHhcCCceEEEeeHHHHHHHHHh
Confidence 467888889999999999772 2266778888899 456688999887765
No 38
>PF08584 Ribonuc_P_40: Ribonuclease P 40kDa (Rpp40) subunit; InterPro: IPR013893 The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex [].
Probab=24.19 E-value=4.6e+02 Score=25.44 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=55.5
Q ss_pred HHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCccceEEE
Q 018982 116 EDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVS 195 (348)
Q Consensus 116 ~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~taFtVs 195 (348)
.-+|+|...+|. +.|-...+ +++.. ..|.+.+.|+++--++|||+--.... .......|.|+
T Consensus 12 ~~vk~g~~~~ls--~~~~~~d~-~~~~~-------------~~G~L~l~l~k~tye~~Gl~G~~~~~--~~~~~~r~vV~ 73 (284)
T PF08584_consen 12 SYVKKGSVYALS--NTRIDSDN-VFALT-------------PSGILTLSLDKETYERLGLEGKPSRF--GGRKHQRYVVE 73 (284)
T ss_pred HhEEcCeEEEEe--CCCCCCCC-EEEEe-------------cCCeEEEEECHHHHHHcCCCCcccCC--CCccceEEEEE
Confidence 446789888887 33333333 33322 24999999999999999997554331 11222489999
Q ss_pred eeccCCC-CCCCChHHHHHHHHH
Q 018982 196 VDAKYGT-TTGVSANDRAKTVLA 217 (348)
Q Consensus 196 VDa~~gt-tTGISA~DRA~TIr~ 217 (348)
||.+... ..|--.++|..+..+
T Consensus 74 idL~~~s~~~g~k~y~Rl~~alk 96 (284)
T PF08584_consen 74 IDLRDPSFLPGKKGYERLRWALK 96 (284)
T ss_pred EeCCCcccCCCcchhHHHHHHHH
Confidence 9987544 346667899888654
No 39
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=23.69 E-value=3.3e+02 Score=26.47 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=69.9
Q ss_pred HHHHHHHHH---CCc-EEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 111 ISEAIEDIR---QGK-LVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 111 Ie~Ai~aLr---~G~-pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
+++|+++.+ .|. ==|++ ||++|.=+.-. +.|+.++.|.+-+ .+..+.+++|.=+..
T Consensus 28 ie~A~~ea~~l~~~GvDgiiv-----eN~~D~Py~~~-~~~etvaaM~~i~---------~~v~~~~~~p~GVnv----- 87 (254)
T PF03437_consen 28 IERAVREAEALEEGGVDGIIV-----ENMGDVPYPKR-VGPETVAAMARIA---------REVRREVSVPVGVNV----- 87 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-----ecCCCCCccCC-CCHHHHHHHHHHH---------HHHHHhCCCCEEeee-----
Confidence 466665543 444 22333 56788877666 9999999999864 334445555422211
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCC-CCCcCccccccCCccccCChhHHHHHHHHHcCCCC
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR-PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~r-PGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~P 265 (348)
++-|. . =+..|... .-.||.| .++++-....+ |+.+. .....+.+-+.-|-.
T Consensus 88 -------L~nd~-------~----aalaiA~A-----~ga~FIRv~~~~g~~~~d~-G~~~~--~a~e~~r~R~~l~a~- 140 (254)
T PF03437_consen 88 -------LRNDP-------K----AALAIAAA-----TGADFIRVNVFVGAYVTDE-GIIEG--CAGELLRYRKRLGAD- 140 (254)
T ss_pred -------ecCCC-------H----HHHHHHHH-----hCCCEEEecCEEceecccC-ccccc--cHHHHHHHHHHcCCC-
Confidence 11111 0 01222222 2358888 77777555544 44443 222334444445666
Q ss_pred cEEEEEEecCCCCcCChhHHHHH
Q 018982 266 VAVLCEIVDDDGSMARLPKLRQF 288 (348)
Q Consensus 266 aaVi~ell~ddG~mar~~~l~~f 288 (348)
+.+++.+-...+..+....+.+.
T Consensus 141 v~ilaDV~~kh~~~l~~~~~~~~ 163 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATRDLEEA 163 (254)
T ss_pred eEEEeeechhhcccCCCCCHHHH
Confidence 88888887766654444334333
No 40
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=23.59 E-value=1.5e+02 Score=32.63 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=35.0
Q ss_pred ccccCChhHHHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCcee
Q 018982 244 VLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 244 vl~R~GhTEAAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~iv 297 (348)
.|.-+||..-+---+|=|...-..|++- ..|||-|...-++.++|+..+.|+|
T Consensus 205 FLDTPGHaAF~aMRaRGA~vtDIvVLVV-AadDGVmpQT~EaIkhAk~A~VpiV 257 (683)
T KOG1145|consen 205 FLDTPGHAAFSAMRARGANVTDIVVLVV-AADDGVMPQTLEAIKHAKSANVPIV 257 (683)
T ss_pred EecCCcHHHHHHHHhccCccccEEEEEE-EccCCccHhHHHHHHHHHhcCCCEE
Confidence 4455666543333334344444444432 2367999999999999999999998
No 41
>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=91 Score=30.57 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=51.5
Q ss_pred HHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccC-C-------
Q 018982 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNH-K------- 182 (348)
Q Consensus 111 Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~-~------- 182 (348)
|-+...+-..|..||..-+ .+| ++--.+.+..-|..+.++.|++ |..+.+.+|||...... .
T Consensus 61 icqi~~~~i~gd~v~~~a~-s~e------lpkyg~~~GLtNyaAay~TglL---LarR~l~~~gmD~~yeg~~e~~gde~ 130 (264)
T KOG0875|consen 61 ICQIAYATIEGDVIVRAAY-AHE------LPKYGVKVGLTNYAAAYCTGLL---LACRLLKRFGMDKIYEGQVEVTGDEY 130 (264)
T ss_pred HHHHHhheecceEEEEeec-ccc------ccccccccccchhHHHHhhHHH---HHHHHHHHhCcccccccceeecCccc
Confidence 3344444455666555432 221 1222334467788888887765 78899999999764431 0
Q ss_pred --CCCCCCccceEEEeecc-CCCCCCCC
Q 018982 183 --DNEEKLCTAFTVSVDAK-YGTTTGVS 207 (348)
Q Consensus 183 --~n~~~~~taFtVsVDa~-~gttTGIS 207 (348)
+..+....+|++.+|.- .-|+||+.
T Consensus 131 ~~e~idgq~~aFt~~Ld~GLaRtttg~k 158 (264)
T KOG0875|consen 131 NVESIDGQPGAFTCYLDAGLARTTTGNK 158 (264)
T ss_pred ccccccCCCCCeEEEecccccccCCCce
Confidence 01234456899999952 13667764
No 42
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=21.77 E-value=3.5e+02 Score=29.07 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=66.9
Q ss_pred EEEEcCCCCHHHHHHHHHhcCCceEeec--C---HHHHHhcCCCccccCCCCCCCCccceEEEeeccCCCC-CCCC----
Q 018982 138 LIMAASLVTPEAMAFIVRHGTGIVCVSM--K---GEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTT-TGVS---- 207 (348)
Q Consensus 138 LV~aAe~~T~e~vafm~~~a~Glicval--t---~~ra~~LgLp~m~~~~~n~~~~~taFtVsVDa~~gtt-TGIS---- 207 (348)
.|+-++..+|+.+..|. .+.|+|+--= + .-.++.||+|..+............-.|+||...|.. -|.-
T Consensus 382 ~ILV~~~t~P~~~~~~~-~a~GIVte~Gg~tSHaAivARelgiP~VvG~~~~~~~~~~G~~VtvDg~~G~V~~G~~~~~~ 460 (530)
T PRK05878 382 VILVRDHTRPDDVHGML-AAQGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSA 460 (530)
T ss_pred EEEEECCCCHHHHhhhH-hheEEEEccCCccchHHHHHHHcCCCEEEcccchhhccCCCCEEEEECCCCEEEeCcccCcC
Confidence 56778888999999995 4778876532 2 2378999999988653233333457789999754431 1221
Q ss_pred ----hHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCC
Q 018982 208 ----ANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264 (348)
Q Consensus 208 ----A~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~ 264 (348)
.....++++.+++.-+ +-..+.-+...+|-. -.+++|+.+-.||+.
T Consensus 461 ~~~~~~~~~~~l~~~ad~i~-~L~l~~n~d~~~~~~----------~~~~~~~~~~~~~~~ 510 (530)
T PRK05878 461 WSESDTPELRELADIAQRIS-PLRAHASGDYPRLDD----------DSDDAVRAALAAGHA 510 (530)
T ss_pred ccccCCHHHHHHHHHHHHcC-CCeeEeCCCCCCCCC----------ccchhHHHHHhcccc
Confidence 1234677777776421 111222222222221 235777777777763
No 43
>PRK05849 hypothetical protein; Provisional
Probab=21.48 E-value=1e+02 Score=34.58 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecC--HH---HHHhcCCCccccCCCC-CCCCccceEE
Q 018982 121 GKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK--GE---DLERLELPLMVNHKDN-EEKLCTAFTV 194 (348)
Q Consensus 121 G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt--~~---ra~~LgLp~m~~~~~n-~~~~~taFtV 194 (348)
|..+++.+.+...-+|+ |+-++.++|...-.+.+...|+|+--=. .+ +|+.||+|.++...+. .+.....-.|
T Consensus 693 g~v~v~~~~~~~~~~G~-Ilv~~~tdPg~~~lf~~~i~g~Vte~Gg~~SH~AI~ARe~gIPavvg~~~~~~~~~~~g~~v 771 (783)
T PRK05849 693 ATVADLDNDNDDDLEGK-IVCIENADPGYDWLFTKGIAGLITCYGGANSHMAIRAAELGLPAVIGVGEELFEKWLKAKRI 771 (783)
T ss_pred EEEEEecChhhcCCCCC-EEEeCCCCccchHHHhhheeEEEEcCCCcccHHHHHHHHcCCCEEEccCcchhhhccCCCEE
Confidence 33334433322223454 4567788887777767677788765432 23 8999999999876333 4455677889
Q ss_pred EeeccCC
Q 018982 195 SVDAKYG 201 (348)
Q Consensus 195 sVDa~~g 201 (348)
.||...|
T Consensus 772 ~vDg~~G 778 (783)
T PRK05849 772 LLDCASQ 778 (783)
T ss_pred EEECCCC
Confidence 9996544
No 44
>PLN02880 tyrosine decarboxylase
Probab=21.28 E-value=1.8e+02 Score=30.43 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHcCCCCcEEEEEEec-CCCCcCChhHHHHHHHhCCCcee
Q 018982 248 AGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 248 ~GhTEAAVdLarLAGL~PaaVi~ell~-ddG~mar~~~l~~fA~~h~L~iv 297 (348)
...-|.+++-.+.+|+.|.+|++..=. .-|.....+++.++|++||+.+.
T Consensus 223 ~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlH 273 (490)
T PLN02880 223 PELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFH 273 (490)
T ss_pred HHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEE
Confidence 345567787778899999999998854 35888999999999999999774
No 45
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=20.43 E-value=2e+02 Score=28.01 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCcEEEEE-EecCCCCcCChhHHHHHHHhCCCcee
Q 018982 264 EPVAVLCE-IVDDDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 264 ~PaaVi~e-ll~ddG~mar~~~l~~fA~~h~L~iv 297 (348)
.+..|+.+ +.+..|...+.+++.++|++|++.+|
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li 204 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVM 204 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEE
Confidence 44556655 45678999999999999999999876
No 46
>PRK07505 hypothetical protein; Provisional
Probab=20.07 E-value=1.2e+02 Score=30.14 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.5
Q ss_pred CCcEEEEEEecCCCCcCChhHHHHHHHhCCCcee
Q 018982 264 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 264 ~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~iv 297 (348)
.-++++|+-.++.|.+...+++.+++++|++.+|
T Consensus 180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li 213 (402)
T PRK07505 180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLY 213 (402)
T ss_pred CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEE
Confidence 3578889888888999999999999999997665
Done!