Query 018982
Match_columns 348
No_of_seqs 207 out of 1220
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k4i_A 3,4-dihydroxy-2-butanon 100.0 3.9E-77 1.3E-81 554.0 18.6 208 105-314 9-228 (233)
2 3mio_A DHBP synthase, 3,4-dihy 100.0 6.3E-77 2.2E-81 545.3 19.0 203 106-310 2-206 (206)
3 1tks_A 3,4-dihydroxy-2-butanon 100.0 7.3E-77 2.5E-81 543.9 17.6 199 107-307 4-203 (204)
4 1snn_A DHBP synthase, 3,4-dihy 100.0 1E-75 3.5E-80 543.8 13.4 200 108-308 1-222 (227)
5 1g57_A DHBP synthase, 3,4-dihy 100.0 8.5E-74 2.9E-78 528.6 19.0 204 107-312 12-215 (217)
6 1y0n_A Hypothetical UPF0270 pr 49.4 23 0.00078 27.6 4.6 34 109-145 38-71 (78)
7 3n2l_A OPRT, oprtase, orotate 42.8 49 0.0017 30.3 6.6 67 244-310 151-220 (238)
8 3p04_A Uncharacterized BCR; SE 38.5 21 0.00072 28.1 3.0 40 107-160 14-53 (87)
9 3mjd_A Orotate phosphoribosylt 30.8 86 0.0029 28.4 6.2 60 250-309 151-214 (232)
10 1lh0_A OMP synthase; loop clos 30.2 1.1E+02 0.0037 26.8 6.7 61 250-310 132-195 (213)
11 1js3_A DDC;, DOPA decarboxylas 26.6 82 0.0028 30.2 5.5 47 251-297 222-269 (486)
12 2l09_A ASR4154 protein; proto- 24.4 86 0.0029 23.3 4.0 25 283-307 26-50 (62)
13 1tif_A IF3-N, translation init 23.5 45 0.0015 25.8 2.4 31 270-300 16-49 (78)
14 2jis_A Cysteine sulfinic acid 22.6 91 0.0031 30.4 5.1 46 252-297 247-293 (515)
15 2kru_A Light-independent proto 21.6 86 0.003 23.3 3.6 25 283-307 27-51 (63)
16 1k7j_A Protein YCIO, protein T 21.2 1.4E+02 0.0049 26.2 5.6 60 109-174 15-79 (206)
17 4e1o_A HDC, histidine decarbox 20.9 1E+02 0.0036 29.8 5.1 48 250-297 227-275 (481)
18 3k40_A Aromatic-L-amino-acid d 20.3 1.3E+02 0.0043 29.2 5.5 50 248-297 218-268 (475)
No 1
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=100.00 E-value=3.9e-77 Score=554.00 Aligned_cols=208 Identities=48% Similarity=0.736 Sum_probs=201.2
Q ss_pred CCCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCC
Q 018982 105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDN 184 (348)
Q Consensus 105 ~~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n 184 (348)
.+.|++|++||++||+|++|||+||++||||||||+|||.+||+.||||++|++|+||++|++++|++|+||+|+.. |
T Consensus 9 ~~~~~~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~~~GliC~~lt~e~~~~L~Lp~Mv~~--n 86 (233)
T 1k4i_A 9 KSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--N 86 (233)
T ss_dssp ---CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--C
T ss_pred CCchhHHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHcCCCCEEEEcCHHHHhhCCCcccccc--c
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999987 8
Q ss_pred CCCCccceEEEeeccC-CCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCC
Q 018982 185 EEKLCTAFTVSVDAKY-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGL 263 (348)
Q Consensus 185 ~~~~~taFtVsVDa~~-gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL 263 (348)
++.++|+|||||||++ |++|||||+||+.||+.|++++++|.||++|||||||++++|||++|+|||||||||||||||
T Consensus 87 ~~~~~TaFTVsVda~~~g~tTGISA~DRa~Tir~la~~~~~p~df~rPGHvfPL~A~~GGVl~R~GHTEAaVDLarLAGl 166 (233)
T 1k4i_A 87 ADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGK 166 (233)
T ss_dssp CCSSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTC
T ss_pred CCCCCCCeEEEEEcccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceeeecCCCeeccCChHHHHHHHHHHcCC
Confidence 8999999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecC-----------CCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcccccc
Q 018982 264 EPVAVLCEIVDD-----------DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE 314 (348)
Q Consensus 264 ~PaaVi~ell~d-----------dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVe 314 (348)
.|++|||||+++ ||+|||++++.+||++|+||+|+|+|||+||+++|++|+
T Consensus 167 ~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iitI~dLi~yr~~~e~~v~ 228 (233)
T 1k4i_A 167 RPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE 228 (233)
T ss_dssp CSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHCCC-
T ss_pred CceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcCCeec
Confidence 999999999999 999999999999999999999999999999999998874
No 2
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=100.00 E-value=6.3e-77 Score=545.32 Aligned_cols=203 Identities=53% Similarity=0.835 Sum_probs=188.8
Q ss_pred CCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCC
Q 018982 106 KGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE 185 (348)
Q Consensus 106 ~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~ 185 (348)
+.|++|++||++||+|+||||+||++||||||||+|||.+||+.||||++|++|++|++|++++|++|+||+|+.. |+
T Consensus 2 ~~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~a~~L~Lp~mv~~--n~ 79 (206)
T 3mio_A 2 TRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQ 79 (206)
T ss_dssp CCCCCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCSCCC------
T ss_pred CCchhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred CCCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCC
Q 018982 186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265 (348)
Q Consensus 186 ~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~P 265 (348)
+.++|+|||||||++|++|||||+||+.||++|++|+++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 80 ~~~~taftvsvda~~g~tTGISA~DRa~Ti~~ladp~~~p~Df~rPGHvfPL~A~~gGvl~R~GhTEaavdLarlAGl~P 159 (206)
T 3mio_A 80 DKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQP 159 (206)
T ss_dssp -------CCCEEESSSCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTGGGTCCCHHHHHHHHHHHTTSCS
T ss_pred CCCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHhCCCCCceeEeeCCCCcccCCChHHHHHHHHHHcCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEE--ecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcc
Q 018982 266 VAVLCEI--VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (348)
Q Consensus 266 aaVi~el--l~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 310 (348)
++||||| +++||+|++++++.+||++|+||+|+|+|||+||+++|
T Consensus 160 a~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~iti~dli~yr~~~e 206 (206)
T 3mio_A 160 AGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206 (206)
T ss_dssp BEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEEHHHHHHHHHHTC
T ss_pred eEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcC
Confidence 9999999 99999999999999999999999999999999998764
No 3
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=100.00 E-value=7.3e-77 Score=543.92 Aligned_cols=199 Identities=51% Similarity=0.819 Sum_probs=190.2
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.|++||+||++||+|+||||+||++||||||||+|||.+||+.||||++|++|+||++|++++|++|+||+|+.. |++
T Consensus 4 ~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~~~~L~Lp~mv~~--n~~ 81 (204)
T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLAN--RSD 81 (204)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------
T ss_pred chhhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHhCCCcEEEEcCHHHHhhCCCchhccc--cCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++|+|||||||++|++|||||+||+.||+.|++++++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 82 ~~~taFtVsVda~~g~tTGISA~DRa~Ti~~l~~~~~~p~df~rPGHvfPL~A~~gGvl~R~GHTEAavdLarLAGl~Pa 161 (204)
T 1tks_A 82 RHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPA 161 (204)
T ss_dssp --CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSB
T ss_pred CCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCcceeeecCCCCccCCCcHHHHHHHHHHcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEe-cCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHH
Q 018982 267 AVLCEIV-DDDGSMARLPKLRQFAQTENLKIISIADLIRYRR 307 (348)
Q Consensus 267 aVi~ell-~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~ 307 (348)
+|||||+ ++||+|+|++++.+||++|+||+|+|+|||+||+
T Consensus 162 ~vicEi~~~~dG~mar~~~l~~fA~~h~l~iiti~dLi~yr~ 203 (204)
T 1tks_A 162 GVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYIS 203 (204)
T ss_dssp EEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHC
T ss_pred EEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHh
Confidence 9999999 8899999999999999999999999999999985
No 4
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=100.00 E-value=1e-75 Score=543.80 Aligned_cols=200 Identities=31% Similarity=0.579 Sum_probs=189.3
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCC---
Q 018982 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDN--- 184 (348)
Q Consensus 108 ~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n--- 184 (348)
|++|++||++||+|+||||+||++||||||||+|||.+||+.||||++|++|+||++|++++|++|+||+|+..+.+
T Consensus 1 ~~~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~~~GliC~~l~~e~~~~L~Lp~Mv~~n~~~~~ 80 (227)
T 1snn_A 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQ 80 (227)
T ss_dssp -CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTT
T ss_pred CchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHcCCCcEEEEcCHHHHhhCCChhhhhhhccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999975211
Q ss_pred -------------CCCCccceEEEeeccCCCCCCCChHHHHHHHHHHhc------CCCCCCCCCCCCCcCccccccCCcc
Q 018982 185 -------------EEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC------RDSKPEDFNRPGHIFPLKYREGGVL 245 (348)
Q Consensus 185 -------------~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd------p~s~~~Df~rPGHVfPL~a~~gGvl 245 (348)
.+.++|+|||||||+. ++|||||+|||.||++|++ ++++|.||++|||||||++++|||+
T Consensus 81 ~~~~~~~l~~~~~~Y~~~TaFtvsVd~~~-~tTGISA~DRa~Tir~la~~~~~~~~~~~~~df~rPGHVfPL~A~~gGVl 159 (227)
T 1snn_A 81 KFKVLRELYPNDIPYDEKSSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVK 159 (227)
T ss_dssp TCHHHHHTCCTTCTTSSSCCEEEEEEETT-CSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGG
T ss_pred cccccccccccccccCCCCCcEEEEEcCC-CCCCCCHHHHHHHHHHHHhhhcccCCCCCHHHcCCCCCceeEEeCCCCEe
Confidence 1228999999999985 9999999999999999999 9999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHH
Q 018982 246 KRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRK 308 (348)
Q Consensus 246 ~R~GhTEAAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~ 308 (348)
+|+|||||||||||||||.|++|||||+|+||+|||++++.+||++|+||+|+|+|||+||++
T Consensus 160 ~R~GHTEaaVdLarlAGl~Pa~VicEi~~ddG~mar~~~l~~fA~~h~l~~iti~dLi~yr~~ 222 (227)
T 1snn_A 160 NRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLD 222 (227)
T ss_dssp TCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC--
T ss_pred eCCCchHHHHHHHHHcCCCceEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876
No 5
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=100.00 E-value=8.5e-74 Score=528.64 Aligned_cols=204 Identities=49% Similarity=0.869 Sum_probs=194.5
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCCC
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~ 186 (348)
.+.+|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|+++||++|+||+|+.. |++
T Consensus 12 ~~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~~~~~GliCl~lt~~ra~~L~Lp~mv~~--n~~ 89 (217)
T 1g57_A 12 PFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN--NTS 89 (217)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CCC
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCcccccc--CCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred CCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCCc
Q 018982 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (348)
Q Consensus 187 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~Pa 266 (348)
.++|+|||||||+.|++|||||.||+.||+.|++|+++|.||++|||||||++++|||++|+|||||||||||||||.||
T Consensus 90 ~~~taftVsvda~~g~tTGISa~DRa~Ti~~lad~~~~~~Df~~PGHvfPL~A~~gGvl~R~GhTEAavdLarLAGl~Pa 169 (217)
T 1g57_A 90 AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPA 169 (217)
T ss_dssp TTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSC
T ss_pred cCCCceEEeeccccCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeecCCCcccCCCcHHHHHHHHHHcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcccc
Q 018982 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312 (348)
Q Consensus 267 aVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~l 312 (348)
+|||||+++||+|++.+++.+||++|+||+|+|+||++||+++|+.
T Consensus 170 ~vicEi~~~dG~mar~~~l~~fA~~h~l~~iti~dLi~yr~~~e~~ 215 (217)
T 1g57_A 170 GVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERK 215 (217)
T ss_dssp EEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC--
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999988754
No 6
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=49.38 E-value=23 Score=27.61 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCC
Q 018982 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~ 145 (348)
.+|++...+|++|+.||++|... |..=|++.+..
T Consensus 38 ~kv~qv~~qL~~GeavIvfse~~---Esv~I~~k~~~ 71 (78)
T 1y0n_A 38 VRVERARHALRRGEAVILFDPES---QQCQLMLRSEV 71 (78)
T ss_dssp HHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGGS
T ss_pred HHHHHHHHHHHcCCEEEEECCCC---CeEeeeEHHHh
Confidence 57899999999999999997443 44335555443
No 7
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=42.77 E-value=49 Score=30.28 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=46.4
Q ss_pred ccccCChhHHHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCcee---eHHHHHHHHHHcc
Q 018982 244 VLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII---SIADLIRYRRKRD 310 (348)
Q Consensus 244 vl~R~GhTEAAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~iv---si~DLi~yr~~~e 310 (348)
++.-=|-..+++++.+-+|...++++|-+--.+|.-.......++.+++|+|+. +++||++|.....
T Consensus 151 vitTG~T~~~a~~~l~~~Ga~vv~v~vlvdr~egG~~~l~a~~~~~~~~Gv~v~SL~~~~~l~~~~~~~~ 220 (238)
T 3n2l_A 151 VITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQG 220 (238)
T ss_dssp CCSSSHHHHHHHHHHHHTTCEEEEEEEEEECCCBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHSSC
T ss_pred eecccHHHHHHHHHHHHcCCEEEEEEEEEEcccCccchhhHHHHHHHHcCCCEEEEEEHHHHHHHHHHcC
Confidence 334333556889999999988888877664444432334556677677899864 8899999987654
No 8
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=38.48 E-value=21 Score=28.13 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCc
Q 018982 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGI 160 (348)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Gl 160 (348)
.|+..+++.+.||+|++|||- = +.+.++.-..++-..+|.
T Consensus 14 sy~Da~~I~d~Lr~~~~VvvN-L-------------~~ld~~~AqRivDF~sG~ 53 (87)
T 3p04_A 14 SFEDAQVIGGAFRDGDAVVFD-M-------------SLLSREEARRIVDFAAGL 53 (87)
T ss_dssp SGGGHHHHHHHHHTTCCEEEE-C-------------TTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEE-C-------------CCCCHHHHHHHHHHhccc
Confidence 678899999999999999984 2 234455555555555555
No 9
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=30.81 E-value=86 Score=28.42 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCCCCc-CChhHHHHHHHhCCCcee---eHHHHHHHHHHc
Q 018982 250 HTEASVDLAVLAGLEPVAVLCEIVDDDGSM-ARLPKLRQFAQTENLKII---SIADLIRYRRKR 309 (348)
Q Consensus 250 hTEAAVdLarLAGL~PaaVi~ell~ddG~m-ar~~~l~~fA~~h~L~iv---si~DLi~yr~~~ 309 (348)
-..+++++.+-+|..+++++|-+--..|.- -.....+++-+++|+|+. +++||+.|....
T Consensus 151 Tl~~a~~~L~~~Ga~vv~v~vlvdr~e~g~~~~~~a~~~~~~~~gv~v~sL~~~~~l~~~~~~~ 214 (232)
T 3mjd_A 151 AFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDISATKKISQDFNIPVLAVTNFESIFEYVKEN 214 (232)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEEEECCBCCTTSSSCHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCcCCccccchhHHHHHHHcCCcEEEEEeHHHHHHHHHhh
Confidence 345889999999988887777664333221 123455567677899864 789999987654
No 10
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=30.23 E-value=1.1e+02 Score=26.83 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCCCCcCChhHHHHHHHhCCCcee---eHHHHHHHHHHcc
Q 018982 250 HTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII---SIADLIRYRRKRD 310 (348)
Q Consensus 250 hTEAAVdLarLAGL~PaaVi~ell~ddG~mar~~~l~~fA~~h~L~iv---si~DLi~yr~~~e 310 (348)
-..+++++.+-+|-..+.++|-+--.+|.-.+.+.+.++-++.|+|+. +++||+.|.....
T Consensus 132 Tl~~a~~~l~~~Ga~~v~v~~l~dr~~~g~~~l~~~~~~~~~~g~~v~sl~~~~~l~~~~~~~~ 195 (213)
T 1lh0_A 132 AIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKVISIITLKDLIAYLEEKP 195 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEECCBBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEcccCcccchhhHHHHHHHcCCCeEEEEEHHHHHHHHHHcC
Confidence 446889999999977766666553333333345566677777788765 8899999987543
No 11
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=26.55 E-value=82 Score=30.22 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCCcEEEEEEe-cCCCCcCChhHHHHHHHhCCCcee
Q 018982 251 TEASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 251 TEAAVdLarLAGL~PaaVi~ell-~ddG~mar~~~l~~fA~~h~L~iv 297 (348)
-|.+++=...+|..|.+|++... ++.|.....+++.++|++||+.++
T Consensus 222 L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lh 269 (486)
T 1js3_A 222 LQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH 269 (486)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEE
Confidence 34555545567888877777665 467999999999999999999875
No 12
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=24.41 E-value=86 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.1
Q ss_pred hHHHHHHHhCCCceeeHHHHHHHHH
Q 018982 283 PKLRQFAQTENLKIISIADLIRYRR 307 (348)
Q Consensus 283 ~~l~~fA~~h~L~ivsi~DLi~yr~ 307 (348)
...++||++.|+..||++.+.+.+.
T Consensus 26 r~tE~~Are~G~~~IT~ev~~~AK~ 50 (62)
T 2l09_A 26 ARIEQLARQAEQDIVTPELVEQARL 50 (62)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 5678999999999999999866554
No 13
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=23.48 E-value=45 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=23.6
Q ss_pred EEEecCCCC---cCChhHHHHHHHhCCCceeeHH
Q 018982 270 CEIVDDDGS---MARLPKLRQFAQTENLKIISIA 300 (348)
Q Consensus 270 ~ell~ddG~---mar~~~l~~fA~~h~L~ivsi~ 300 (348)
+.|+++||+ .++..++.+.|++.+|-+|.|+
T Consensus 16 Vrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevs 49 (78)
T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA 49 (78)
T ss_dssp EEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCcCCCcccHHHHHHHHHHcCCCEEEEC
Confidence 567888885 4778888888888888766553
No 14
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=22.62 E-value=91 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCcEEEEEEe-cCCCCcCChhHHHHHHHhCCCcee
Q 018982 252 EASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 252 EAAVdLarLAGL~PaaVi~ell-~ddG~mar~~~l~~fA~~h~L~iv 297 (348)
|.+++-.+-.|..|.+|++... +..|.....+++.++|++|++.++
T Consensus 247 ~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~ 293 (515)
T 2jis_A 247 ERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLH 293 (515)
T ss_dssp HHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEE
Confidence 3444444446778888888776 457999999999999999999876
No 15
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=21.63 E-value=86 Score=23.34 Aligned_cols=25 Identities=4% Similarity=0.127 Sum_probs=21.0
Q ss_pred hHHHHHHHhCCCceeeHHHHHHHHH
Q 018982 283 PKLRQFAQTENLKIISIADLIRYRR 307 (348)
Q Consensus 283 ~~l~~fA~~h~L~ivsi~DLi~yr~ 307 (348)
...++||++.|+..||++.+.+.+.
T Consensus 27 r~tE~~Are~G~~~IT~ev~~~AK~ 51 (63)
T 2kru_A 27 KNTDNYAREIGEPVVTADVFRKAKE 51 (63)
T ss_dssp HHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 4678999999999999999866554
No 16
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=21.24 E-value=1.4e+02 Score=26.20 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHH-----hcCCceEeecCHHHHHhcC
Q 018982 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVR-----HGTGIVCVSMKGEDLERLE 174 (348)
Q Consensus 109 ~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~-----~a~Glicvalt~~ra~~Lg 174 (348)
..+++|.+.|++|+.|++=.+ +-.-+++...+++.+..+.+ ....++.++-.-+.+.++-
T Consensus 15 ~~i~~a~~~L~~G~iva~pTd------tvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~ 79 (206)
T 1k7j_A 15 RLINQAVEIVRKGGVIVYPTD------SGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS 79 (206)
T ss_dssp HHHHHHHHHHHTTCCEEEEET------TEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHB
T ss_pred HHHHHHHHHHHCCCEEEEECC------CEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHh
Confidence 469999999999998886542 44667888889998888753 2345666666667777663
No 17
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=20.89 E-value=1e+02 Score=29.75 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHcCCCCcEEEEEEec-CCCCcCChhHHHHHHHhCCCcee
Q 018982 250 HTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 250 hTEAAVdLarLAGL~PaaVi~ell~-ddG~mar~~~l~~fA~~h~L~iv 297 (348)
+-|.+++=.+-.|..|..|++.... ..|.....+++.++|++|++.++
T Consensus 227 ~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lh 275 (481)
T 4e1o_A 227 ALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLH 275 (481)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEE
Confidence 4456666566778889888877655 46999999999999999998764
No 18
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=20.32 E-value=1.3e+02 Score=29.22 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHcCCCCcEEEEEEec-CCCCcCChhHHHHHHHhCCCcee
Q 018982 248 AGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 297 (348)
Q Consensus 248 ~GhTEAAVdLarLAGL~PaaVi~ell~-ddG~mar~~~l~~fA~~h~L~iv 297 (348)
..+-|.+++-.+-.|..|..|++.... ..|...+.+++.++|++||+.++
T Consensus 218 ~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lh 268 (475)
T 3k40_A 218 GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIH 268 (475)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEE
Confidence 334556666666678888877776654 47999999999999999999875
Done!