RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018982
(348 letters)
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/
3,4-dihydroxy-2-butanone-4-phosphate synthase.
Length = 450
Score = 542 bits (1399), Expect = 0.0
Identities = 216/275 (78%), Positives = 243/275 (88%), Gaps = 1/275 (0%)
Query: 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRE 133
D+ FGTL AEITP T DFF +D E D DRPT+GF+SI+EA+EDIRQGK V+VVDDEDRE
Sbjct: 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60
Query: 134 NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFT 193
NEGDLIMAASLVTPEAMAF+V+HG+GIVCVSMKGEDL+RL LPLMV K+NEEK+ TAFT
Sbjct: 61 NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120
Query: 194 VSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA 253
V+VDAK+GTTTGVSA+DRAKT+LALA DSKPEDF RPGHIFPL+YREGGVLKRAGHTEA
Sbjct: 121 VTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEA 180
Query: 254 SVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312
+VDLAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+ LKIISIADLIRYRRKR++L
Sbjct: 181 AVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
VE A A +PT WG F A+CYRS LDGIEHIA VK
Sbjct: 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVK 275
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 402
Score = 389 bits (1001), Expect = e-135
Identities = 147/241 (60%), Positives = 181/241 (75%), Gaps = 2/241 (0%)
Query: 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK 166
F SI EAI DI GK VIVVDDEDRENEGDLI AA TPE +AF+VRH +G VCV +
Sbjct: 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLT 62
Query: 167 GEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPE 226
ED +RL+LP MV H N++ TAFTVSVDA G TTG+SA DRA T+ LA SKP
Sbjct: 63 EEDADRLDLPPMVAH--NQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPA 120
Query: 227 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLR 286
DF RPGH+FPL+ + GGVL+RAGHTEA+VDLA LAGL+P V+CEIV++DG+MAR+P+LR
Sbjct: 121 DFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELR 180
Query: 287 QFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346
FA +L +I+IADLI YRR+ ++LVE A +PT +G F+A Y S+LDG EH+A+V
Sbjct: 181 VFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240
Query: 347 K 347
K
Sbjct: 241 K 241
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 337 bits (866), Expect = e-112
Identities = 136/244 (55%), Positives = 178/244 (72%), Gaps = 8/244 (3%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F SI +A+ IR G+ V+VVDDE+RENEGDLI AA TPE + F+ G++C++M G
Sbjct: 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTG 64
Query: 168 EDLERLELPLMV--NHKDNEEKLCTAFTVSVDA--KYGTTTGVSANDRAKTVLALACRDS 223
E L+ L+LPLMV N N+ TAFTVS+DA + G +TG+SA DRA+T+ D+
Sbjct: 65 ERLDELDLPLMVDRNTDSNQ----TAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDT 120
Query: 224 KPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLP 283
KPED RPGHIFPL+ +EGGVLKRAGHTEA+VDLA LAGL P V+CEI + DGSMARLP
Sbjct: 121 KPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLP 180
Query: 284 KLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHI 343
+L+++A+ LK+ISIADLI YR + +R V A A +P+ +G F+A+ YR+ LDG EH+
Sbjct: 181 ELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHV 240
Query: 344 AMVK 347
A+VK
Sbjct: 241 ALVK 244
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 325 bits (835), Expect = e-110
Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 2/239 (0%)
Query: 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168
ASI E I DIR G++VI+VD+EDRENEGDL+MAA VTPEA+ F+ +HG G++C+++ E
Sbjct: 4 ASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEE 63
Query: 169 DLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDF 228
E+L LPLM N + T FTVS++A G TTG+SA DRA+T+ A RD+KPED
Sbjct: 64 RCEQLGLPLMT--YRNGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDI 121
Query: 229 NRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQF 288
+PGHIFPL + GGVL RAGHTEA DLA LAGL P AV+CEI+ DDG+MARLP L +F
Sbjct: 122 VQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEF 181
Query: 289 AQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
A+ LKI +IADLI YR + + +VE A P+ T G F+ YR G H+A+VK
Sbjct: 182 AKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVK 240
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 317 bits (815), Expect = e-109
Identities = 121/196 (61%), Positives = 153/196 (78%), Gaps = 3/196 (1%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
I EAIE ++ GK VIVVDDEDRENEGDL++AA VTPE++ F++RH G++CV++ E
Sbjct: 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVIAAEKVTPESVNFMIRHARGLICVALTEERA 60
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR 230
+RL LP MV N ++ TAFTVSVDAK GTTTG+SA DRA T+ ALA ++ PEDF R
Sbjct: 61 DRLGLPPMV--DRNTDRFGTAFTVSVDAK-GTTTGISAADRALTIRALADPNAFPEDFVR 117
Query: 231 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQ 290
PGH+FPL+ +EGGVL+R GHTEA+VDLA LAGL P AV+CEI++DDG+MARLP L +FA+
Sbjct: 118 PGHVFPLRAKEGGVLERRGHTEAAVDLARLAGLTPAAVICEILNDDGTMARLPDLEEFAK 177
Query: 291 TENLKIISIADLIRYR 306
L +I+I DLI YR
Sbjct: 178 EHGLPLITIEDLIEYR 193
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 307 bits (790), Expect = e-106
Identities = 122/204 (59%), Positives = 156/204 (76%), Gaps = 3/204 (1%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + EAIE +R GK VIVVDDEDRENEGDLI AA VTPE +AF+ RH +G++CV++
Sbjct: 3 FERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTE 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E +RL LP MV +N + TAFTVSVDA+ TTTG+SA DRA T+ ALA +KP D
Sbjct: 63 ERAKRLGLPPMV--DNNTDAHGTAFTVSVDAR-ETTTGISAADRALTIRALADPGAKPSD 119
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
F RPGH+FPL+ ++GGVL+R GHTEA+VDLA LAGL+P V+CEI++DDG+MARLP+L +
Sbjct: 120 FRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEE 179
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
FA+ L +I+I DLI YR+K +R
Sbjct: 180 FAKEHGLPVITIEDLIEYRKKHER 203
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 270 bits (692), Expect = 6e-89
Identities = 124/242 (51%), Positives = 158/242 (65%), Gaps = 10/242 (4%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
+ EAIEDI+ GK++I+VDDEDRENEGDL+ AA TPE + F+ H G++CVS+
Sbjct: 3 IKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTK 62
Query: 168 EDLERLELPLMV-NHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPE 226
E ++LELP MV + N E TAFTVS+DAK TTG+SA +R T+ LA SKP
Sbjct: 63 ELAKKLELPPMVSKNTSNHE---TAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPS 118
Query: 227 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLR 286
DF RPGHIFPL ++GGVL R GHTE SVDL LAGL+PVAV+CEI+ +DG+MAR L
Sbjct: 119 DFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLE 178
Query: 287 QFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLD--GIEHIA 344
FA+ NLK+I ++DL+ YR K + L++ FKA Y + LD EHIA
Sbjct: 179 DFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFA--GFKAEKY-TFLDHLQNEHIA 235
Query: 345 MV 346
Sbjct: 236 FK 237
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 199
Score = 257 bits (658), Expect = 8e-86
Identities = 104/199 (52%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + EA+E +++G++V+V DDEDRENEGDLI+AA +TPE +AF+ RH G++CV++
Sbjct: 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITP 61
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP MV+ + + FT++V + T TG+SANDRA T+ A KP D
Sbjct: 62 DIADKLDLPPMVDINTSASGTASTFTITVAHR-KTFTGISANDRALTIRAALADVVKPSD 120
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
F RPGH+FPL+ +GGVL R GHTEASVDLA LAGL+P V+CE+++DDG+MAR P+L +
Sbjct: 121 FRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELME 180
Query: 288 FAQTENLKIISIADLIRYR 306
+A+ NLK+ISI DLI YR
Sbjct: 181 YAKKHNLKLISIEDLIEYR 199
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 255 bits (653), Expect = 8e-85
Identities = 102/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A++ +R+G+ V+V+DDEDRENEGD+I AA +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E ++L+LP+MV ++N + TAFTV+++A G TTGVSA DR T+ A +KP D
Sbjct: 73 ERRKQLDLPMMV--ENNTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAGL+P VLCE+ +DDG+MAR P+
Sbjct: 131 LNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIA 190
Query: 288 FAQTENLKIISIADLIRYRRKRDRLVE 314
FA+ N+ +++I DL+ YR+ +R
Sbjct: 191 FAKQHNMPVLTIEDLVAYRQAHERKAS 217
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 369
Score = 246 bits (630), Expect = 2e-79
Identities = 117/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F +I E IED RQGK+V++VDDEDRENEGDL++AA +A+ F+ R G++C+++
Sbjct: 3 FNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTD 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E +RL L MV N TAFTVS++A G TTG+SA DRA+TV A +++PED
Sbjct: 63 EHCQRLGLEQMV--PSNGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPED 120
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
+PGHIFPL+ REGGVL RAGHTEA DLA LAG P +V+ E+++DDG+MAR P L
Sbjct: 121 LVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEV 180
Query: 288 FAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346
FA +KI +IADLI YR + ++ +PT+ G F+ Y ++G H+AMV
Sbjct: 181 FAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMV 239
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 214
Score = 232 bits (594), Expect = 5e-76
Identities = 100/197 (50%), Positives = 138/197 (70%), Gaps = 2/197 (1%)
Query: 114 AIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERL 173
AI +QG V+V+DDEDRENEGDLI A +TPE MA ++R+G+GIVC+ + E ++L
Sbjct: 19 AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQL 78
Query: 174 ELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH 233
+LP MV H + K TAFTV+++A G +TGVSA DR T+ A ++KP D +RPGH
Sbjct: 79 DLPPMVQHNTSVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGH 136
Query: 234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTEN 293
+FPL+ GGVL R GHTEA+VDLA LAG + V+CEI +DDG+MAR P++ +FA+
Sbjct: 137 VFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFG 196
Query: 294 LKIISIADLIRYRRKRD 310
+++I DL+ YR K +
Sbjct: 197 YAVVTIEDLVEYRLKYN 213
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 205 bits (522), Expect = 3e-65
Identities = 93/200 (46%), Positives = 137/200 (68%), Gaps = 2/200 (1%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
+ A++ +R+G+ V+++DDEDRENEGD+I + +T MA ++R +GIVC+ +
Sbjct: 17 VENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQA 76
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR 230
++LELP MV +N TAFTVS++AK+G TTGVSA DR T+ A +KPED R
Sbjct: 77 DKLELPPMV--VNNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLAR 134
Query: 231 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQ 290
PGH+FPL+ R GGVL R GHTE +VDL +AGL+P VLCE+ + DG+MA+ P++ F +
Sbjct: 135 PGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGK 194
Query: 291 TENLKIISIADLIRYRRKRD 310
N+ +++I D++ YR + D
Sbjct: 195 LHNMPVLTIEDMVMYRNQFD 214
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 200 bits (510), Expect = 4e-63
Identities = 99/212 (46%), Positives = 136/212 (64%), Gaps = 7/212 (3%)
Query: 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168
+ A++ +R G+ VI++DD DRENE DLI+AA +T MA ++R G+GIVC+ + GE
Sbjct: 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGE 78
Query: 169 DLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDF 228
L+RLELP MV+ N + TAFTVS++A+ G TTGVSA DR T+ A ++ D
Sbjct: 79 TLDRLELPPMVDS--NRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDV 136
Query: 229 NRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQF 288
PGH+FPL+ + GGVL R GHTE SVDLA LAGL P VLCE+++ DG+M R L ++
Sbjct: 137 VSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERY 196
Query: 289 AQTENLKIISIADLIRYRRKRDRLVELAAAAP 320
A E L ++I +L + + R A AP
Sbjct: 197 AAKEGLVALAIDELAAHLQAR-----GATGAP 223
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 151 bits (383), Expect = 2e-42
Identities = 85/240 (35%), Positives = 138/240 (57%), Gaps = 21/240 (8%)
Query: 115 IEDIRQ----GKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED- 169
+E++R+ GK VI++D RENE D + A ++T E + F + +G G++C++ ED
Sbjct: 1 MEELREAFLEGKPVILIDRN-RENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDL 59
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFN 229
L+R L N + T F + VD YGT TG+SA++RA T LA +F
Sbjct: 60 LKRGFFKLPSNGGE------TNFFIPVD--YGTGTGISASERALTCRKLA-EGLYVHEFR 110
Query: 230 RPGHIFPLKYREGGVL--KRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
PGH+ L GG+ +R GHTEAS++L+ L G + AV+ EI+D+ G L + +
Sbjct: 111 YPGHVTLL----GGIGFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLK 166
Query: 288 FAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
A+ +L ++ I D+ + +R +L+++ A A +PT +G F+ + + LDG EH+A+VK
Sbjct: 167 LAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVK 226
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 93.6 bits (233), Expect = 1e-22
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
EA + + G V++ D + RE E D++ A VT +++ + ++ G++C + +
Sbjct: 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSE 61
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVDAKYG-------------TTTGVSANDRAKT-- 214
+ L L + E YG T TG+S DRA T
Sbjct: 62 GKTLGLNFLAEILKRHELYRKLVK---KPSYGDEPAFSLWVNHVKTKTGISDYDRALTIR 118
Query: 215 ----VLALACRDSKP------EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264
V+ LA + + E+F PGH+ L R G+ +R GHTE S+ LA AGLE
Sbjct: 119 ELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAAGLE 176
Query: 265 PVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 298
P AV+ E++D+ S+ K ++ A+ ++
Sbjct: 177 PSAVIAEMLDEKLSL-SKEKAKKIAKNLGFPLVE 209
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP
cyclohydrolase II catalyzes the first committed step in
the biosynthesis of riboflavin.
Length = 169
Score = 50.7 bits (122), Expect = 1e-07
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
VE A AP+PT +G F+ YR L+DG EH+A+VK
Sbjct: 1 VERVAEAPLPTRFGEFRLVAYRDLVDGKEHLALVK 35
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism].
Length = 193
Score = 48.5 bits (116), Expect = 8e-07
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
LVE A A +PT G F+ YR +DG EH+A+VK
Sbjct: 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVK 37
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP
cyclohydrolase II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the
precursor molecule for the synthesis of the coenzymes
flavin mononucleotide (FMN) and flavin adenine
dinucleotide (FAD) which are essential to cell
metabolism. The enzyme is present in plants and numerous
pathogenic bacteria, especially gram negative organisms,
who are dependent on endogenous synthesis of the vitamin
because they lack an appropriate uptake system. For
animals and humans, which lack this biosynthetic
pathway, riboflavin is the essential vitamin B2. GTP
cyclohydrolase II requires magnesium ions for activity
and has a bound catalytic zinc. The functionally active
form is thought to be a homodimer. A paralogous protein
is encoded in the genome of Streptomyces coelicolor,
which converts GTP to
2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate (FAPy), an activity that has otherwise been
reported for unrelated GTP cyclohydrolases III.
Length = 193
Score = 47.9 bits (115), Expect = 1e-06
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
LVE A AP+PT +G F+ + DG EH+A+VK
Sbjct: 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVK 36
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed.
Length = 197
Score = 36.7 bits (86), Expect = 0.009
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
++ A A +PT WG F + L G EH+A+V
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVF 37
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II. Several members of the
family are bifunctional, involving both ribA and ribB
function. In these cases, ribA tends to be on the
C-terminal end of the protein and ribB tends to be on
the N-terminal. The function of archaeal members of the
family has not been demonstrated and is assigned
tentatively [Biosynthesis of cofactors, prosthetic
groups, and carriers, Riboflavin, FMN, and FAD].
Length = 191
Score = 36.3 bits (84), Expect = 0.010
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 314 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
E A A +PT +G F + G +H+A+VK
Sbjct: 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVK 34
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 32.3 bits (74), Expect = 0.33
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 132 RENEGDLIMAASLVTPEAMAFIVRHGTGI 160
RE E + +M SL T E M+ +V TG+
Sbjct: 93 REGEAEALMKGSLHTDELMSAVVARDTGL 121
>gnl|CDD|214861 smart00857, Resolvase, Resolvase, N terminal domain. The
N-terminal domain of the resolvase family contains the
active site and the dimer interface. The extended arm at
the C-terminus of this domain connects to the C-terminal
helix-turn-helix domain of resolvase.
Length = 148
Score = 30.7 bits (70), Expect = 0.52
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 99 FDLDRPTKGFASISEAIEDIRQGKL-VIVVDDEDR--ENEGDLIMAASLVTPEAMAFIVR 155
DRP G + D+R G + V+VV DR + DL+ + +
Sbjct: 47 KKADRP--GLQ---RLLADLRAGDIDVLVVYKLDRLGRSLRDLL--------ALLELLEE 93
Query: 156 HGTGIVCVSMKGEDLERLELPLMVN 180
G +V + D L+++
Sbjct: 94 KGVRLVSLKEGILDTSTPAGRLLLD 118
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 31.2 bits (71), Expect = 0.88
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 62 NNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGF 108
+ K T IE + TIGFG+ T D++ L + G+
Sbjct: 230 SKDKPTLIEVTT-TIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGW 275
>gnl|CDD|217684 pfam03710, GlnE, Glutamate-ammonia ligase adenylyltransferase.
Conserved repeated domain found in GlnE proteins. These
proteins adenylate and deadenylate glutamine synthases:
ATP + {L-Glutamate:ammonia ligase (ADP-forming)} =
Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase
(ADP-forming)}. The family is related to the pfam01909
domain.
Length = 251
Score = 30.0 bits (68), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 264 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 302
E L + +++ M R LRQF + + L+ I+ ADL
Sbjct: 46 ELREALARVPEEEQLMDR---LRQFKRRQLLR-IAAADL 80
>gnl|CDD|153059 cd03589, CLECT_CEL-1_like, C-type lectin-like domain (CTLD) of the
type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina.
CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of
the type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina. CTLD refers
to a domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. The CEL-1 CTLD
binds three calcium ions and has a high specificity for
N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong
cytotoxicity which is inhibited by GalNAc. This protein
may play a role as a toxin defending against predation.
Echinoidin is found in the coelomic fluid of the sea
urchin and is specific for GalBeta1-3GalNAc. Echinoidin
has a cell adhesive activity towards human cancer cells
which is not mediated through the CTLD. Both CEL-1 and
Echinoidin are multimeric proteins comprised of multiple
dimers linked by disulfide bonds.
Length = 137
Score = 28.1 bits (63), Expect = 3.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 322 PTMWGPFKAHCYR 334
PT W F +CYR
Sbjct: 2 PTFWTAFGGYCYR 14
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain,
uncharacterized subfamily 6. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 254
Score = 28.7 bits (64), Expect = 4.0
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 148 EAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVS 207
M + V +V +S+ G L V N+ F VS + T+G
Sbjct: 89 AGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTG--ALFVVSAGNEGHGTSGSP 146
Query: 208 ANDRAKTVLALACRDSKPED 227
+ A L++ D ED
Sbjct: 147 GSAYA--ALSVGAVDRDDED 164
>gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This
TIM alpha/beta barrel structure is found in xylose
isomerase and in endonuclease IV (EC:3.1.21.2). This
domain is also found in the N termini of bacterial
myo-inositol catabolism proteins. These are involved in
the myo-inositol catabolism pathway, and is required for
growth on myo-inositol in Rhizobium leguminosarum bv.
viciae.
Length = 202
Score = 28.5 bits (64), Expect = 4.5
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 19/109 (17%)
Query: 255 VDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY--------- 305
++ A G + V + + + +L+ + L+I S+ +
Sbjct: 1 LEAAAELGFDGVELFFDYPRPASDKEEIEELKALLKEYGLEISSLNPSLGLLEPDEHERA 60
Query: 306 --RRKRDRLVELAAAAPIPTM--------WGPFKAHCYRSLLDGIEHIA 344
R +ELAAA + G + L + + +A
Sbjct: 61 AALEALKRAIELAAALGAKVVVVHPGSAPAGKDREEALDRLAESLNELA 109
>gnl|CDD|221597 pfam12483, GIDE, E3 Ubiquitin ligase. This domain family is found
in bacteria, archaea and eukaryotes, and is typically
between 150 and 163 amino acids in length. There is a
single completely conserved residue E that may be
functionally important. GIDE is an E3 ubiquitin ligase
which is involved in inducing apoptosis.
Length = 154
Score = 27.7 bits (62), Expect = 5.4
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 148 EAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTG-- 205
+ F +R GTG V V M D E+ L+ E + F++ G T
Sbjct: 26 REVPFYLRDGTGRVLVVM---DPSGAEIELVTVLDRFEPSEGSLFSLLFGFFSGDVTLGY 82
Query: 206 -----VSANDRAKTVLALACRD 222
V TV+ A RD
Sbjct: 83 RYIERVLPVGTRLTVVGEAVRD 104
>gnl|CDD|235344 PRK05097, PRK05097, Ter macrodomain organizer matS-binding protein;
Provisional.
Length = 150
Score = 27.6 bits (62), Expect = 6.2
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 22/77 (28%)
Query: 238 KYREGGVLKRAGHTEASV-DLAV--LAGLE--PVAVLCEIVDDDGSMARLPKLRQFAQTE 292
K+REG ++ R + EAS AV L LE PV VL E +D + + +++Q
Sbjct: 21 KHREGELITR--YIEASAAQEAVDELLKLENEPVKVL-EWIDKHMNPELVNRMKQ----- 72
Query: 293 NLKIISIADLIRYRRKR 309
IR RRKR
Sbjct: 73 ---------TIRARRKR 80
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 27.6 bits (62), Expect = 7.4
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 261 AGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLK---IISIADLIRYRRKRDRLVELAA 317
AG E V V IVD R ++ + +K +++++DL+ + +
Sbjct: 138 AGAEVVGVAV-IVD------RQSGAKEVLKEYGVKLVSLVTLSDLLEVLYEAGDIPLEEL 190
Query: 318 AAPI 321
A P
Sbjct: 191 AIPA 194
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding
proteins, family 3.
Length = 220
Score = 27.6 bits (62), Expect = 7.5
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 106 KGFASISEAIEDIRQGKLVIVVDDE-------DRENEGDLIMAASLVTPEAMAFIVRHG 157
+ ++EA++ + G++ VV D + +L++ ++ E VR G
Sbjct: 131 VLYDDLAEALQALAAGRVDAVVADSPVLAYLIKKNPGLNLVVVDEPLSGEPYGIAVRKG 189
>gnl|CDD|218448 pfam05125, Phage_cap_P2, Phage major capsid protein, P2 family.
Length = 333
Score = 27.9 bits (62), Expect = 8.9
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 121 GKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVN 180
GK+VI + D N L+ A + + +V + G DL + +VN
Sbjct: 187 GKVVIGGKNADYANLDALVFDA---VSGLIDPWHQDDPDLVAIV--GRDLLADKYFPIVN 241
Query: 181 -HKDNEEKLCT 190
H+ EKL
Sbjct: 242 KHQTATEKLAA 252
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 27.7 bits (62), Expect = 9.9
Identities = 8/25 (32%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDR 132
I+ ++D+ Q ++V+++DD DR
Sbjct: 148 RTDIASTLDDL-QKRIVVIIDDLDR 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,018,386
Number of extensions: 1788055
Number of successful extensions: 1841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1817
Number of HSP's successfully gapped: 57
Length of query: 348
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 250
Effective length of database: 6,590,910
Effective search space: 1647727500
Effective search space used: 1647727500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)