Query 018983
Match_columns 348
No_of_seqs 152 out of 1022
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3346 Uncharacterized conser 100.0 4E-49 8.6E-54 366.2 23.4 221 73-345 18-240 (252)
2 PF02104 SURF1: SURF1 family; 100.0 1.4E-47 3E-52 351.6 23.1 209 76-334 2-212 (212)
3 cd06662 SURF1 SURF1 superfamil 100.0 1.1E-44 2.4E-49 329.1 23.1 202 82-338 1-202 (202)
4 KOG1563 Mitochondrial protein 100.0 1.2E-43 2.5E-48 326.6 21.3 222 70-340 58-279 (288)
5 COG4578 GutM Glucitol operon a 85.9 0.77 1.7E-05 39.1 3.1 28 69-96 9-36 (128)
6 PF12273 RCR: Chitin synthesis 46.0 11 0.00024 31.9 1.3 23 70-92 2-24 (130)
7 KOG1691 emp24/gp25L/p24 family 39.3 16 0.00035 33.8 1.4 29 72-100 179-210 (210)
8 PF11293 DUF3094: Protein of u 35.6 22 0.00047 25.9 1.2 24 65-88 26-49 (55)
9 COG4736 CcoQ Cbb3-type cytochr 29.9 51 0.0011 24.5 2.5 21 321-341 6-26 (60)
10 PF15202 Adipogenin: Adipogeni 28.0 36 0.00078 26.0 1.4 30 318-347 10-39 (81)
11 PF10883 DUF2681: Protein of u 27.4 91 0.002 24.9 3.7 17 80-96 15-31 (87)
12 PF14981 FAM165: FAM165 family 26.9 2E+02 0.0044 20.3 4.8 27 77-103 19-45 (51)
13 PF12351 Fig1: Ca2+ regulator 24.0 52 0.0011 29.6 2.0 14 324-337 159-172 (182)
14 PF11743 DUF3301: Protein of u 23.4 1.2E+02 0.0025 24.5 3.7 25 79-103 7-31 (97)
15 PF06724 DUF1206: Domain of Un 23.3 71 0.0015 24.0 2.3 27 70-96 45-71 (73)
16 PRK09731 putative general secr 21.3 1.5E+02 0.0032 26.8 4.3 20 70-89 39-58 (178)
17 PRK09546 zntB zinc transporter 20.2 95 0.0021 30.1 3.1 28 317-344 291-320 (324)
No 1
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4e-49 Score=366.15 Aligned_cols=221 Identities=31% Similarity=0.521 Sum_probs=179.9
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEcccccc
Q 018983 73 WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS 152 (348)
Q Consensus 73 ~~~~~~~~i~~~LG~WQl~R~~~K~~li~~~e~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~l~G~f~~~~~ilvdnR~~~ 152 (348)
+++++.++++++||+||++|++||.++|+++|++..++|+++++..+.....++.+||+|+++|+|++++++++++|+.+
T Consensus 18 ~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~~~e~l~~~r~~~ 97 (252)
T COG3346 18 LLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLHDKEVLLYARVTE 97 (252)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcCCceEEEeeeeec
Confidence 34556668889999999999999999999999999999999998876433334489999999999999999999999864
Q ss_pred CCCCCcccEEEEeEeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhcCCCCcc
Q 018983 153 ISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIV 232 (348)
Q Consensus 153 ~~G~~~~GY~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~w~~~p~~~ 232 (348)
| ++||+|+|||.+++| ..|||||||||.+.++.+. ..
T Consensus 98 --g--~~Gy~VlTPf~~~dG------~~VLVnRG~vp~e~~~~~~----------r~----------------------- 134 (252)
T COG3346 98 --G--GPGYEVLTPFALDDG------RTVLVNRGFVPRERKEASP----------RA----------------------- 134 (252)
T ss_pred --C--CccEEEecccEecCC------cEEEEeCCcccCcccCCCC----------CC-----------------------
Confidence 6 899999999999876 6999999999998654331 11
Q ss_pred cCCCCCcceEEEEEEEEcCCCCCCCCcCCCCCCCeeeeeCHHHHHHHcCCC--CcceEEEecCCCCCCCCCCCCCCCccc
Q 018983 233 EDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLP--ENTVYIEDTNENVNPSNPYPLPKDVST 310 (348)
Q Consensus 233 ~~~~~p~g~vtvtG~lr~~e~~~~f~~~n~~~~~~w~~iDl~~la~~lg~~--l~~~~i~~~~~~~~~~~~~p~p~~~~~ 310 (348)
...+.|+|+|+|++|++|+.+.+.+.|++.++.||++|+++|++..|++ +.++|+.+... .+|..+|....+
T Consensus 135 --~~~~~g~v~I~Gl~r~~e~~~~~l~~nd~~~~~~y~~d~~~~A~~~gl~~~~~~~~v~ae~~----~~pgglp~~~~~ 208 (252)
T COG3346 135 --EGQPAGPVTITGLLRPPEPGGSLLPDNDPGKNLWYSIDLAAFAQATGLPDLLAPYFVDAEGQ----DNPGGLPVGGVT 208 (252)
T ss_pred --CCCCCCcEEEEEEEecCCCccccCcccCcccCeeeeccHHHHHhhcCCCcccceeEEecCCC----CCCCCCCCCCCc
Confidence 0244589999999999999988999999999999999999999999999 45544544432 123344444444
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHhheeee
Q 018983 311 LLRSSVMPQDHLNYTLTWCASYLSHLNFCTWTCTT 345 (348)
Q Consensus 311 ~~~~~~~p~~Hl~YAlQWf~lA~~~l~~~~~~~~~ 345 (348)
.+ ..+|+|++||+|||+||+++++++++..+|
T Consensus 209 ~~---~~~n~HL~YaitWf~La~~l~~~~~~~~~r 240 (252)
T COG3346 209 VI---DFPNNHLSYALTWFGLAAALLAGLGYYLRR 240 (252)
T ss_pred ee---ccCCCcceehhHHHHHHHHHHHHHHHHHHH
Confidence 32 358999999999999999999988876543
No 2
>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []. Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane
Probab=100.00 E-value=1.4e-47 Score=351.62 Aligned_cols=209 Identities=35% Similarity=0.580 Sum_probs=169.4
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCC
Q 018983 76 FLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG 155 (348)
Q Consensus 76 ~~~~~i~~~LG~WQl~R~~~K~~li~~~e~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~l~G~f~~~~~ilvdnR~~~~~G 155 (348)
++++++|++||+||++|++||++++++++++++++|+++++....+...++.+||+|+++|+|++++++|||||.++ |
T Consensus 2 l~~~~~~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~~~~~~~~~r~V~~~G~~~~~~~~ll~~r~~~--g 79 (212)
T PF02104_consen 2 LLAIALLVGLGFWQLDRAQWKQALIARIEARLSAPPVPLPDLLDPDALPEDLEYRRVTVSGRFDPEKQILLDNRSRD--G 79 (212)
T ss_pred ChHHHHHHHHCHHHhCHHHHHHHHHHHHHHHhhCCCcCCccccccccCccccCceEEEEEEEECCCceEEEeccccC--C
Confidence 45678899999999999999999999999999999999998873223456899999999999999999999999984 6
Q ss_pred CCcccEEEEeEeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCC-CCcccccccccchhhhhcCCCCcccC
Q 018983 156 VTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLN-LAPSVQQSQQSSWWWFWLKKPNIVED 234 (348)
Q Consensus 156 ~~~~GY~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~-v~~~~~~~~~~~~~~~w~~~p~~~~~ 234 (348)
+.||+|+|||++++| ..|||||||||.+..++.. +|+ + |
T Consensus 80 --~~Gy~Vltp~~~~dg------~~vlVnRGWvp~~~~~~~~--------~p~~~-------------------p----- 119 (212)
T PF02104_consen 80 --RPGYHVLTPFRLDDG------RAVLVNRGWVPAEAADRAA--------LPEQV-------------------P----- 119 (212)
T ss_pred --CceEEEEEEEEecCC------cEEEEEecccccccCCccc--------ccccc-------------------c-----
Confidence 999999999999865 6999999999988554431 121 1 0
Q ss_pred CCCCcceEEEEEEEEcCCCC-CCCCcCCCCCCCeeeeeCHHHHHHHcCCCCcceEEEecCCCCCCCCCCCCCCCcccccc
Q 018983 235 DVPSIASVEVVGVVRGSEKP-SIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLR 313 (348)
Q Consensus 235 ~~~p~g~vtvtG~lr~~e~~-~~f~~~n~~~~~~w~~iDl~~la~~lg~~l~~~~i~~~~~~~~~~~~~p~p~~~~~~~~ 313 (348)
+++.|+++|+|++++++.+ +.|.++|++..++|+++|+++|++.+|.++.++|+.+..+... ..+.+.. .+
T Consensus 120 -~~~~g~~~v~G~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~g~~~~p~~l~~~~~~~~-~g~~~~~---~~--- 191 (212)
T PF02104_consen 120 -APPSGEVTVTGRLRPPEPRGGIFTPENDPEPNRWQSIDLEAMAQALGLPLAPFYLQQDADPAA-AGPPPPW---PP--- 191 (212)
T ss_pred -CCCCceEEEEEEEECCCCcCCcCccCCCCCCceEEecCHHHHHHHhCCCCCCeEEEeccCccc-ccccCcC---CC---
Confidence 2457999999999988877 5788888889999999999999999999888877776654211 1111111 11
Q ss_pred ccCCCCCchHHHHHHHHHHHH
Q 018983 314 SSVMPQDHLNYTLTWCASYLS 334 (348)
Q Consensus 314 ~~~~p~~Hl~YAlQWf~lA~~ 334 (348)
..+.+++|++||+|||+||++
T Consensus 192 ~~~~~~~Hl~YA~qWf~lA~~ 212 (212)
T PF02104_consen 192 VVMPPNKHLGYALQWFGLALA 212 (212)
T ss_pred cCCCccchHHHHHHHHHHHcC
Confidence 136799999999999999974
No 3
>cd06662 SURF1 SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.
Probab=100.00 E-value=1.1e-44 Score=329.09 Aligned_cols=202 Identities=32% Similarity=0.555 Sum_probs=166.1
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCCCCcccE
Q 018983 82 SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGY 161 (348)
Q Consensus 82 ~~~LG~WQl~R~~~K~~li~~~e~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~l~G~f~~~~~ilvdnR~~~~~G~~~~GY 161 (348)
|++||+||++|++||++++++++++.+++|+++++..+.. .++.+||+|+++|+|+++++++++||.++ | +.||
T Consensus 1 ~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~--~~~~~~r~V~v~G~~~~~~~~ll~~r~~~--g--~~Gy 74 (202)
T cd06662 1 LVGLGFWQLQRAEWKEALIARIEARLAAPPVPLPELLAPP--LEDLEYRRVTVTGTFLPEKEVLLDNRTRD--G--RPGY 74 (202)
T ss_pred CccccHHHHhHHHHHHHHHHHHHHHhcCCCCCCCcccccc--ccccceEEEEEEEEECCCCEEEEeccccC--C--CCce
Confidence 6799999999999999999999999999999999876432 46789999999999999999999999974 6 8999
Q ss_pred EEEeEeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhcCCCCcccCCCCCcce
Q 018983 162 YVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIAS 241 (348)
Q Consensus 162 ~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~w~~~p~~~~~~~~p~g~ 241 (348)
+|++||++.+| ..|||||||||.+..++. +|.+ ++|.|+
T Consensus 75 ~vl~p~~~~~g------~~ilVnrGwv~~~~~~~~---------~~~~--------------------------~~p~g~ 113 (202)
T cd06662 75 EVLTPFRLDDG------RTVLVNRGWVPADADRPA---------LPAV--------------------------APPTGE 113 (202)
T ss_pred EEEeeeEECCC------CEEEEECCCCCCCccCcc---------cCCC--------------------------CCCCcc
Confidence 99999999875 589999999998754322 1211 256799
Q ss_pred EEEEEEEEcCCCCCCCCcCCCCCCCeeeeeCHHHHHHHcCCCCcceEEEecCCCCCCCCCCCCCCCccccccccCCCCCc
Q 018983 242 VEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDH 321 (348)
Q Consensus 242 vtvtG~lr~~e~~~~f~~~n~~~~~~w~~iDl~~la~~lg~~l~~~~i~~~~~~~~~~~~~p~p~~~~~~~~~~~~p~~H 321 (348)
++|+|+++++|.++.+.+.++...+.|+.+|+++|++.+|.++.+.++...... +.+.+.++.. +.+.+++|
T Consensus 114 ~~v~G~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~H 185 (202)
T cd06662 114 VTVTGRLRPPEPRGLFLPPNDPAANPWQNRDLEAMAQALGLPLVPLVLQLASGA-----PPGLPRPWPP---PVMIPNKH 185 (202)
T ss_pred EEEEEEEecCCCCCCcCCCCCcccccccccCHHHHHHHHCCCCCCeEEEecCCC-----CCCCCCCCCC---CCCCCcch
Confidence 999999999998888777777888889999999999999998887666655432 1112222222 24789999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018983 322 LNYTLTWCASYLSHLNF 338 (348)
Q Consensus 322 l~YAlQWf~lA~~~l~~ 338 (348)
++||+|||+||++++++
T Consensus 186 l~YA~qWf~lA~~~~~~ 202 (202)
T cd06662 186 LGYAVQWFALAAAALVL 202 (202)
T ss_pred hhhHHHHHHHHHHHHhC
Confidence 99999999999998864
No 4
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=100.00 E-value=1.2e-43 Score=326.62 Aligned_cols=222 Identities=36% Similarity=0.648 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccc
Q 018983 70 WSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPR 149 (348)
Q Consensus 70 w~~~~~~~~~~i~~~LG~WQl~R~~~K~~li~~~e~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~l~G~f~~~~~ilvdnR 149 (348)
.+.++++++.+++|+||+||+.|.+||.++|+.+++++.++|++|++... +.+++|||+|.++|+|+|+++++|+||
T Consensus 58 ~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~pi~LP~~~~---~l~~lEyrrV~~rG~F~H~kEm~vgPR 134 (288)
T KOG1563|consen 58 FLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEPIPLPKDLD---DLEGLEYRRVKLRGIFLHDKEMYVGPR 134 (288)
T ss_pred hHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCCccCCCChh---HhcccceEEEEEEEEEcccceEEeccc
Confidence 34446666778999999999999999999999999999999999988762 578999999999999999999999999
Q ss_pred cccCCCCCcccEEEEeEeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhcCCC
Q 018983 150 SRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKP 229 (348)
Q Consensus 150 ~~~~~G~~~~GY~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~w~~~p 229 (348)
.+...+....||+|+|||..+|. +..|||||||||...-+... | .|
T Consensus 135 ~r~~~~g~~~Gy~vvTPF~~~d~-----g~~ILVNRGWvp~~~v~pet---------------------------R--~~ 180 (288)
T KOG1563|consen 135 TRSGPKGSEIGYYVVTPFILDDN-----GSIILVNRGWVPRKKVEPET---------------------------R--YP 180 (288)
T ss_pred cccCCCCcccceEEeeeeEECCC-----CCEEEEecCccchhhcCccc---------------------------c--cc
Confidence 98633323578999999999875 47999999999986322110 1 01
Q ss_pred CcccCCCCCcceEEEEEEEEcCCCCCCCCcCCCCCCCeeeeeCHHHHHHHcCCCCcceEEEecCCCCCCCCCCCCCCCcc
Q 018983 230 NIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVS 309 (348)
Q Consensus 230 ~~~~~~~~p~g~vtvtG~lr~~e~~~~f~~~n~~~~~~w~~iDl~~la~~lg~~l~~~~i~~~~~~~~~~~~~p~p~~~~ 309 (348)
...+.|+|+|+|+||++|.++.|++.|.++.+.||+.|+.+||++.|.. |.|+..+.++..-.+..|++.+..
T Consensus 181 -----~~~~~~~v~l~gvVRk~e~r~~f~~~n~pe~~~w~y~Dl~~mA~~~G~~--Pi~ida~y~~~~~~~g~PIG~q~~ 253 (288)
T KOG1563|consen 181 -----SGQPEGHVELVGVVRKTETRPQFTPVNKPESNVWYYRDLPKMARATGTE--PILIDALYDDMDTKRGGPIGGQTR 253 (288)
T ss_pred -----cCCccceEEEEEEEecCCCCCCcccccCCcccceeecCHHHHHHHcCCC--ceEeecccCccccccCCCCCCCce
Confidence 1356799999999999999999999999999999999999999999975 367887765432233344444333
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHHHh
Q 018983 310 TLLRSSVMPQDHLNYTLTWCASYLSHLNFCT 340 (348)
Q Consensus 310 ~~~~~~~~p~~Hl~YAlQWf~lA~~~l~~~~ 340 (348)
....|+|+.|-+|||+|+++.-++++
T Consensus 254 -----v~lrN~Hl~YlvTWy~Ls~~t~~l~~ 279 (288)
T KOG1563|consen 254 -----VTLRNEHLQYLVTWYSLSFVTSILWF 279 (288)
T ss_pred -----eeeecCCcceEEEeehHHHHHHHHHH
Confidence 24579999999999999998876655
No 5
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=85.93 E-value=0.77 Score=39.14 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 018983 69 TWSKWLLFLPGAISFGLGTWQIFRRQDK 96 (348)
Q Consensus 69 ~w~~~~~~~~~~i~~~LG~WQl~R~~~K 96 (348)
.|+..+++++.++++.||-||+.|.+.-
T Consensus 9 ~~lI~~~vi~w~~q~algwwQ~srfq~a 36 (128)
T COG4578 9 PALIALAVIAWCAQLALGWWQWSRFQSA 36 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677788899999999999874
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=46.02 E-value=11 Score=31.91 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhcchhhhhh
Q 018983 70 WSKWLLFLPGAISFGLGTWQIFR 92 (348)
Q Consensus 70 w~~~~~~~~~~i~~~LG~WQl~R 92 (348)
|+.++++|++++++.+++.-..|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444444444443333
No 7
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.34 E-value=16 Score=33.77 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhcchhhh---hhHHHHHHHH
Q 018983 72 KWLLFLPGAISFGLGTWQI---FRRQDKIKML 100 (348)
Q Consensus 72 ~~~~~~~~~i~~~LG~WQl---~R~~~K~~li 100 (348)
.++.++.+++|++|+.||+ .|+.+|..||
T Consensus 179 ~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 179 AWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3455566677888888984 6777776653
No 8
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.62 E-value=22 Score=25.93 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=12.0
Q ss_pred CCCchHHHHHHHHHHHHHhhcchh
Q 018983 65 APSSTWSKWLLFLPGAISFGLGTW 88 (348)
Q Consensus 65 ~~~~~w~~~~~~~~~~i~~~LG~W 88 (348)
..|+.|..+++++++++.++|=-|
T Consensus 26 ~PFrP~~Ll~~li~Vv~gl~llS~ 49 (55)
T PF11293_consen 26 KPFRPWRLLIVLIVVVIGLGLLSR 49 (55)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Confidence 345556655555555554444333
No 9
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.86 E-value=51 Score=24.53 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHhh
Q 018983 321 HLNYTLTWCASYLSHLNFCTW 341 (348)
Q Consensus 321 Hl~YAlQWf~lA~~~l~~~~~ 341 (348)
-.+||-+|+.++++++.++++
T Consensus 6 ~~~~a~a~~t~~~~l~fiavi 26 (60)
T COG4736 6 MRGFADAWGTIAFTLFFIAVI 26 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999998888755553
No 10
>PF15202 Adipogenin: Adipogenin
Probab=27.95 E-value=36 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhheeeeec
Q 018983 318 PQDHLNYTLTWCASYLSHLNFCTWTCTTFL 347 (348)
Q Consensus 318 p~~Hl~YAlQWf~lA~~~l~~~~~~~~~~~ 347 (348)
.+-.+++-+.|+.+-++++++....+.||+
T Consensus 10 ndltfsflvfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 10 NDLTFSFLVFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999988777777765
No 11
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.44 E-value=91 Score=24.93 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHhhcchhhhhhHHHH
Q 018983 80 AISFGLGTWQIFRRQDK 96 (348)
Q Consensus 80 ~i~~~LG~WQl~R~~~K 96 (348)
++.++...||+.+++..
T Consensus 15 ~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 15 ALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34457788999999887
No 12
>PF14981 FAM165: FAM165 family
Probab=26.87 E-value=2e+02 Score=20.33 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHH
Q 018983 77 LPGAISFGLGTWQIFRRQDKIKMLEYR 103 (348)
Q Consensus 77 ~~~~i~~~LG~WQl~R~~~K~~li~~~ 103 (348)
+++..+.+.-.||-.|.+.|....+.-
T Consensus 19 ilClaFAgvK~yQ~krlEak~~k~~ae 45 (51)
T PF14981_consen 19 ILCLAFAGVKMYQRKRLEAKLKKLEAE 45 (51)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444445567789999999998766443
No 13
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=23.98 E-value=52 Score=29.63 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q 018983 324 YTLTWCASYLSHLN 337 (348)
Q Consensus 324 YAlQWf~lA~~~l~ 337 (348)
=++||++|++.+++
T Consensus 159 ~~l~W~aF~f~~l~ 172 (182)
T PF12351_consen 159 MVLGWFAFAFLLLV 172 (182)
T ss_pred HhHHHHHHHHHHHH
Confidence 36899999995553
No 14
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=23.39 E-value=1.2e+02 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=18.5
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHH
Q 018983 79 GAISFGLGTWQIFRRQDKIKMLEYR 103 (348)
Q Consensus 79 ~~i~~~LG~WQl~R~~~K~~li~~~ 103 (348)
++++++.-+||..|..|.....++.
T Consensus 7 ll~~~~~~~w~~~~~~E~A~~~a~~ 31 (97)
T PF11743_consen 7 LLALVGWFWWQSRRQRERALQAARR 31 (97)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455578899999999987666554
No 15
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=23.26 E-value=71 Score=24.00 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHH
Q 018983 70 WSKWLLFLPGAISFGLGTWQIFRRQDK 96 (348)
Q Consensus 70 w~~~~~~~~~~i~~~LG~WQl~R~~~K 96 (348)
+..+++.++.+.++..|.||+-++-.+
T Consensus 45 ~G~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 45 FGRWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677778889999999887654
No 16
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=21.29 E-value=1.5e+02 Score=26.82 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhcchhh
Q 018983 70 WSKWLLFLPGAISFGLGTWQ 89 (348)
Q Consensus 70 w~~~~~~~~~~i~~~LG~WQ 89 (348)
.+.++.+++++++++.|.||
T Consensus 39 ll~~~g~vL~l~i~Y~~iWq 58 (178)
T PRK09731 39 MLLAAVVFLFSVGYYVLIWQ 58 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444445556667999997
No 17
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.17 E-value=95 Score=30.13 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=18.7
Q ss_pred CCCCc--hHHHHHHHHHHHHHHHHHhheee
Q 018983 317 MPQDH--LNYTLTWCASYLSHLNFCTWTCT 344 (348)
Q Consensus 317 ~p~~H--l~YAlQWf~lA~~~l~~~~~~~~ 344 (348)
.|+-| +||.+.+..+++.++++++|+.+
T Consensus 291 mPel~~~~gy~~~l~im~~i~~~~~~~fkr 320 (324)
T PRK09546 291 IPGGGWPFGFSIFCLLLVVLIGGVAWWLKR 320 (324)
T ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 56555 67777777777777766666543
Done!