Query 018983
Match_columns 348
No_of_seqs 152 out of 1022
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 22.4 48 0.0016 20.0 1.8 26 69-94 5-30 (32)
2 3syn_E ATP-binding protein YLX 10.2 1.9E+02 0.0066 16.1 2.1 18 89-106 2-19 (23)
3 1rz2_A Conserved hypothetical 9.8 62 0.0021 29.1 0.0 6 84-89 26-31 (254)
4 4gac_A Alcohol dehydrogenase [ 7.5 1.4E+02 0.0048 27.2 1.4 22 83-104 16-37 (324)
5 2iub_A CORA, divalent cation t 7.1 1.6E+02 0.0056 27.6 1.6 25 320-344 335-359 (363)
6 1qle_D Cytochrome AA3, ccytoch 6.8 2.8E+02 0.0097 18.1 2.2 18 325-342 23-40 (43)
7 3j00_Z Cell division protein F 6.7 2.6E+02 0.0087 21.5 2.3 22 69-90 3-24 (98)
8 1m4j_A A6 gene product, twinfi 6.6 2.3E+02 0.0078 22.7 2.1 28 2-29 94-123 (142)
9 4ev6_A Magnesium transport pro 6.3 2.3E+02 0.0077 26.2 2.1 24 320-343 311-334 (339)
10 2kse_A Sensor protein QSEC; me 6.1 2.5E+02 0.0087 22.0 2.1 16 77-92 170-185 (186)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=22.40 E-value=48 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhHH
Q 018983 69 TWSKWLLFLPGAISFGLGTWQIFRRQ 94 (348)
Q Consensus 69 ~w~~~~~~~~~~i~~~LG~WQl~R~~ 94 (348)
-|-.+.-++++..++..|+|-+.-.+
T Consensus 5 iweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666555666666789999765443
No 2
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=10.18 E-value=1.9e+02 Score=16.10 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 018983 89 QIFRRQDKIKMLEYRQNR 106 (348)
Q Consensus 89 Ql~R~~~K~~li~~~e~~ 106 (348)
|+.|+++-..+-+.++.+
T Consensus 2 qmnrydqaatlrakmekr 19 (23)
T 3syn_E 2 QMNRYDQAATLRAKMEKR 19 (26)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 778898888888777765
No 3
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=9.81 E-value=62 Score=29.08 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=0.0
Q ss_pred hcchhh
Q 018983 84 GLGTWQ 89 (348)
Q Consensus 84 ~LG~WQ 89 (348)
..+.||
T Consensus 26 l~~~~~ 31 (254)
T 1rz2_A 26 FYSVYE 31 (254)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 334344
No 4
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=7.47 E-value=1.4e+02 Score=27.15 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=15.3
Q ss_pred hhcchhhhhhHHHHHHHHHHHH
Q 018983 83 FGLGTWQIFRRQDKIKMLEYRQ 104 (348)
Q Consensus 83 ~~LG~WQl~R~~~K~~li~~~e 104 (348)
++||+||++..+-++.+.+.++
T Consensus 16 iGlGtw~~~~~~a~~~i~~Al~ 37 (324)
T 4gac_A 16 IGLGTWKSEPGQVKAAIKHALS 37 (324)
T ss_dssp BCEECTTCCHHHHHHHHHHHHH
T ss_pred ceeECCCCCHHHHHHHHHHHHH
Confidence 4899999987766655554443
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=7.10 E-value=1.6e+02 Score=27.56 Aligned_cols=25 Identities=4% Similarity=-0.020 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhheee
Q 018983 320 DHLNYTLTWCASYLSHLNFCTWTCT 344 (348)
Q Consensus 320 ~Hl~YAlQWf~lA~~~l~~~~~~~~ 344 (348)
-+.||-+-|..++++++++++|+.+
T Consensus 335 ~~~Gy~~~l~~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 335 WKWGYPVVLAVMGVIAVIMVVYFKK 359 (363)
T ss_dssp ----CHHHHHHHHHHHHHHHTTTTS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777776654
No 6
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=6.80 E-value=2.8e+02 Score=18.15 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhe
Q 018983 325 TLTWCASYLSHLNFCTWT 342 (348)
Q Consensus 325 AlQWf~lA~~~l~~~~~~ 342 (348)
...|.+++++++++++.+
T Consensus 23 ~~k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 23 GATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357999999888777654
No 7
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=6.67 E-value=2.6e+02 Score=21.53 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHhhcchhhh
Q 018983 69 TWSKWLLFLPGAISFGLGTWQI 90 (348)
Q Consensus 69 ~w~~~~~~~~~~i~~~LG~WQl 90 (348)
.|.++++++++++.+..|.|.+
T Consensus 3 ~~~G~~F~l~Vl~~l~~~~~~~ 24 (98)
T 3j00_Z 3 RLAGILFLLTVLTTVLVSGWVV 24 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHHH
Confidence 3566655555555556667754
No 8
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=6.59 E-value=2.3e+02 Score=22.70 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=22.6
Q ss_pred cchhhhhHHHHHhHhhhhcCCccc--eecc
Q 018983 2 KVKEKMAVASISKTLTKLGGGSSF--LLNH 29 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 29 (348)
++|+||..+|=.-+|.+.-+|..+ .|+.
T Consensus 94 ~vr~KMlYAssk~~lk~~l~g~~~~~~i~a 123 (142)
T 1m4j_A 94 HVRQKMLYAATRATLKKEFGGGHIKDEVFG 123 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeEEEEEe
Confidence 689999999988889888877766 5553
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.29 E-value=2.3e+02 Score=26.24 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=15.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhee
Q 018983 320 DHLNYTLTWCASYLSHLNFCTWTC 343 (348)
Q Consensus 320 ~Hl~YAlQWf~lA~~~l~~~~~~~ 343 (348)
.+.||.+-|..++++++++++|+.
T Consensus 311 ~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 311 NPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766666666553
No 10
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=6.10 E-value=2.5e+02 Score=22.00 Aligned_cols=16 Identities=13% Similarity=-0.103 Sum_probs=9.7
Q ss_pred HHHHHHhhcchhhhhh
Q 018983 77 LPGAISFGLGTWQIFR 92 (348)
Q Consensus 77 ~~~~i~~~LG~WQl~R 92 (348)
+++++++.+|.|.+.|
T Consensus 170 ~~~~~~~~~~~~~vrr 185 (186)
T 2kse_A 170 VALPIMLIIMMVLLGR 185 (186)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3444455677777765
Done!