Query 018983
Match_columns 348
No_of_seqs 152 out of 1022
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 09:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 41.0 9.9 0.00072 21.8 2.5 21 322-342 10-30 (34)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 11.5 1.5E+02 0.011 20.9 5.0 29 73-101 7-35 (158)
3 d1m56d_ f.23.8.1 (D:) Bacteria 8.4 1E+02 0.0076 18.7 2.2 18 325-342 22-39 (42)
4 d1qled_ f.23.8.1 (D:) Bacteria 8.2 1.1E+02 0.0078 18.7 2.2 17 326-342 24-40 (43)
5 d1sjwa_ d.17.4.9 (A:) Nogaloni 7.7 1.4E+02 0.01 21.1 3.3 40 238-284 96-135 (142)
6 d1frba_ c.1.7.1 (A:) FR-1 (fib 5.6 96 0.007 25.7 1.4 21 83-103 15-35 (315)
7 d1hqta_ c.1.7.1 (A:) Aldose re 5.4 80 0.0058 26.5 0.7 23 83-105 16-38 (324)
8 d1dpba_ c.43.1.1 (A:) Dihydrol 5.4 1.2E+02 0.0084 25.1 1.7 16 5-20 128-143 (243)
9 d1us0a_ c.1.7.1 (A:) Aldose re 5.3 1.1E+02 0.0083 25.2 1.7 22 83-104 16-37 (314)
10 d2vvpa1 c.121.1.1 (A:3-158) Al 4.9 2.3E+02 0.016 21.7 3.1 25 89-113 132-156 (156)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=40.97 E-value=9.9 Score=21.82 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhe
Q 018983 322 LNYTLTWCASYLSHLNFCTWT 342 (348)
Q Consensus 322 l~YAlQWf~lA~~~l~~~~~~ 342 (348)
++|--.|.+|+++.+.+++.+
T Consensus 10 layekgwlafslamlfvfial 30 (34)
T d1xmeb2 10 LAYEKGWLAFSLAMLFVFIAL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 689999999999988776643
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=11.52 E-value=1.5e+02 Score=20.87 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 018983 73 WLLFLPGAISFGLGTWQIFRRQDKIKMLE 101 (348)
Q Consensus 73 ~~~~~~~~i~~~LG~WQl~R~~~K~~li~ 101 (348)
+++++++.||..++.-.+.+..+|...-+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~ 35 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSE 35 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888777754433
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.44 E-value=1e+02 Score=18.69 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhe
Q 018983 325 TLTWCASYLSHLNFCTWT 342 (348)
Q Consensus 325 AlQWf~lA~~~l~~~~~~ 342 (348)
-.+|++.++.++++++.+
T Consensus 22 ~~t~~~i~~i~~liflAi 39 (42)
T d1m56d_ 22 MVTWAAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368999888888776643
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=8.21 E-value=1.1e+02 Score=18.73 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhe
Q 018983 326 LTWCASYLSHLNFCTWT 342 (348)
Q Consensus 326 lQWf~lA~~~l~~~~~~ 342 (348)
.+|++.++.++++++.+
T Consensus 24 ~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 24 ATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999888888777643
No 5
>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]}
Probab=7.70 E-value=1.4e+02 Score=21.10 Aligned_cols=40 Identities=10% Similarity=-0.152 Sum_probs=26.8
Q ss_pred CcceEEEEEEEEcCCCCCCCCcCCCCCCCeeeeeCHHHHHHHcCCCC
Q 018983 238 SIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPE 284 (348)
Q Consensus 238 p~g~vtvtG~lr~~e~~~~f~~~n~~~~~~w~~iDl~~la~~lg~~l 284 (348)
....+++.|.-.- .-.++-....|.+.|...|.+++|+++
T Consensus 96 tGk~~~~~~~~~~-------~~~dGkI~e~~~~~D~~~~~~QlG~~~ 135 (142)
T d1sjwa_ 96 TDRRFSGEQVHLM-------RIVDGKIRDHRDWPDFQGTLRQLGDPW 135 (142)
T ss_dssp CCCEEEEEEEEEE-------EEETTEEEEEEEEECHHHHHHHTTSCC
T ss_pred CcceEEEEEEEEE-------EEECCEEEEEEEeccHHHHHHHCCCCC
Confidence 3467888886321 112223355789999999999999865
No 6
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.62 E-value=96 Score=25.73 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=13.7
Q ss_pred hhcchhhhhhHHHHHHHHHHH
Q 018983 83 FGLGTWQIFRRQDKIKMLEYR 103 (348)
Q Consensus 83 ~~LG~WQl~R~~~K~~li~~~ 103 (348)
++||+|+++..+-++.+-..+
T Consensus 15 iGlGtw~~~~~~a~~~i~~Al 35 (315)
T d1frba_ 15 VGLGTWKSPPNQVKEAVKAAI 35 (315)
T ss_dssp BCEECTTCCHHHHHHHHHHHH
T ss_pred cceECCCCCHHHHHHHHHHHH
Confidence 489999998755554444333
No 7
>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.41 E-value=80 Score=26.54 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=16.8
Q ss_pred hhcchhhhhhHHHHHHHHHHHHH
Q 018983 83 FGLGTWQIFRRQDKIKMLEYRQN 105 (348)
Q Consensus 83 ~~LG~WQl~R~~~K~~li~~~e~ 105 (348)
++||+|++++.+-++.+...++.
T Consensus 16 lglGtw~~~~~~a~~~l~~A~~~ 38 (324)
T d1hqta_ 16 IGLGTWKSEPGQVKAAIKYALTV 38 (324)
T ss_dssp BCBBCTTCCTTTHHHHHHHHHHT
T ss_pred heeECCCCCHHHHHHHHHHHHHc
Confidence 48999999988776665555543
No 8
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=5.37 E-value=1.2e+02 Score=25.06 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=10.6
Q ss_pred hhhhHHHHHhHhhhhc
Q 018983 5 EKMAVASISKTLTKLG 20 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (348)
+++.+..|++.++++.
T Consensus 128 ~~~sl~~i~~~~~~l~ 143 (243)
T d1dpba_ 128 DQKSLLQLAAEAAELA 143 (243)
T ss_dssp GGSCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH
Confidence 5666777777776653
No 9
>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=1.1e+02 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=14.5
Q ss_pred hhcchhhhhhHHHHHHHHHHHH
Q 018983 83 FGLGTWQIFRRQDKIKMLEYRQ 104 (348)
Q Consensus 83 ~~LG~WQl~R~~~K~~li~~~e 104 (348)
++||+||+.+.+-...+-..++
T Consensus 16 iglGtw~~~~~~~~~~i~~A~~ 37 (314)
T d1us0a_ 16 LGLGTWKSPPGQVTEAVKVAID 37 (314)
T ss_dssp BCEECTTCCHHHHHHHHHHHHH
T ss_pred eeeECCCCCHHHHHHHHHHHHH
Confidence 3899999987665544444443
No 10
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.89 E-value=2.3e+02 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCcc
Q 018983 89 QIFRRQDKIKMLEYRQNRLQMDPLR 113 (348)
Q Consensus 89 Ql~R~~~K~~li~~~e~~~~~~Pv~ 113 (348)
.=.|.+.|.+.+.++|+....+|.|
T Consensus 132 ~ggRh~~Rv~ki~~~e~~~~~~~~p 156 (156)
T d2vvpa1 132 KAQRHQRRIDILAEYERTHEAPPVP 156 (156)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCChHHHHHHHHHHHHHcCCCCCCC
Confidence 3469999999999999988888765
Done!