BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018984
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGF 122
VN+ G +FC+ W P T PK L+ HG G+ + +E AR L VFA D+ G
Sbjct: 40 VNADGQYLFCRYWKP-TGTPKALIFVSHGAGEH-SGRYEELARMLMGLDLLVFAHDHVGH 97
Query: 123 GLSAGLHGYIPSFDRLVDDVIEHYSNI-KEYPEFRTLPSFLFGQSLGGAVALKVHLKQPN 181
G S G + F V DV++H ++ K+YP LP FL G S+GGA+A+ ++P
Sbjct: 98 GQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP---GLPVFLLGHSMGGAIAILTAAERPG 154
Query: 182 AWSGAILVAPMCKIADDMVPPFLVKQILIGIAN-ILPKHKLVPQKDLAEAAFRDLKNREL 240
++G +L++P+ + F K + + N +LP L P +++ E+
Sbjct: 155 HFAGMVLISPLVLANPESATTF--KVLAAKVLNLVLPNLSLGP----IDSSVLSRNKTEV 208
Query: 241 TKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALY 298
YN ++ + ++ ++LL +ER L K+++P L+L G D + D + L
Sbjct: 209 DIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLM 268
Query: 299 EKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 345
E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 269 ELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINMWVSQRTATA 314
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGF 122
VN+ G +FC+ W P T PK L+ HG G+ + +E AR L VFA D+ G
Sbjct: 41 VNADGQYLFCRYWKP-TGTPKALIFVSHGAGEH-SGRYEELARMLMGLDLLVFAHDHVGH 98
Query: 123 GLSAGLHGYIPSFDRLVDDVIEHYSNI-KEYPEFRTLPSFLFGQSLGGAVALKVHLKQPN 181
G S G + F V DV++H ++ K+YP LP FL G S+GGA+A+ ++P
Sbjct: 99 GQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP---GLPVFLLGHSMGGAIAILTAAERPG 155
Query: 182 AWSGAILVAPMCKIADDMVPPFLVKQILIGIAN-ILPKHKLVPQKDLAEAAFRDLKNREL 240
++G +L++P+ + F K + + N +LP L P +++ E+
Sbjct: 156 HFAGMVLISPLVLANPESATTF--KVLAAKVLNLVLPNLSLGP----IDSSVLSRNKTEV 209
Query: 241 TKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALY 298
YN ++ + ++ ++LL +ER L K+++P L+L G D + D + L
Sbjct: 210 DIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLM 269
Query: 299 EKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 345
E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 270 ELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINMWVSQRTATA 315
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 16/287 (5%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGF 122
VN+ G +FC+ W P T PK L+ HG G+ + +E AR L VFA D+ G
Sbjct: 40 VNADGQYLFCRYWKP-TGTPKALIFVSHGAGEH-SGRYEELARXLXGLDLLVFAHDHVGH 97
Query: 123 GLSAGLHGYIPSFDRLVDDVIEHY-SNIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQPN 181
G S G + F V DV++H S K+YP LP FL G S GGA+A+ ++P
Sbjct: 98 GQSEGERXVVSDFHVFVRDVLQHVDSXQKDYP---GLPVFLLGHSXGGAIAILTAAERPG 154
Query: 182 AWSGAILVAPMCKIADDMVPPFLVKQILIGIAN-ILPKHKLVPQKDLAEAAFRDLKNREL 240
++G +L++P+ + F K + + N +LP L P +++ E+
Sbjct: 155 HFAGXVLISPLVLANPESATTF--KVLAAKVLNLVLPNLSLGP----IDSSVLSRNKTEV 208
Query: 241 TKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALY 298
YN ++ + ++ ++LL +ER L K+++P L+L G D + D + L
Sbjct: 209 DIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLX 268
Query: 299 EKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 345
E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 269 ELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINXWVSQRTATA 314
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 143/286 (50%), Gaps = 14/286 (4%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGF 122
VN+ G +FC+ W P T PK L+ HG G+ + +E AR L VFA D+ G
Sbjct: 23 VNADGQYLFCRYWAP-TGTPKALIFVSHGAGEH-SGRYEELARMLMGLDLLVFAHDHVGH 80
Query: 123 GLSAGLHGYIPSFDRLVDDVIEHYSNI-KEYPEFRTLPSFLFGQSLGGAVALKVHLKQPN 181
G S G + F V DV++H ++ K+YP LP FL G S+GGA+A+ ++P
Sbjct: 81 GQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP---GLPVFLLGHSMGGAIAILTAAERPG 137
Query: 182 AWSGAILVAPMCKIADDMVPPFLVKQILIGIANILPKHKLVPQKDLAEAAFRDLKNRELT 241
++G +L++P+ + F V + + ++LP P +++ E+
Sbjct: 138 HFAGMVLISPLVLANPESATTFKVLAAKV-LNSVLPNLSSGP----IDSSVLSRNKTEVD 192
Query: 242 KYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYE 299
YN ++ + ++ ++LL +ER L K+++P L+L G D + D + L E
Sbjct: 193 IYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLME 252
Query: 300 KASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 345
A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 253 LAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINMWVSQRTATA 297
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 58 EESYEVNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTA-RKLASSGYGVFA 116
EE +VN G +F + + ++++ + HGY T + + + GY V+A
Sbjct: 6 EEFIDVN--GTRVFQRKXVTDSNRRS--IALFHGYSFTSXDWDKADLFNNYSKIGYNVYA 61
Query: 117 MDYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLP-SFLFGQSLGGAVALKV 175
DYPGFG SA Y DR D+ I++Y + + S + G S GG +
Sbjct: 62 PDYPGFGRSASSEKY--GIDR--GDLKHAAEFIRDYLKANGVARSVIXGASXGGGXVIXT 117
Query: 176 HLKQPNAWSGAILVAP 191
L+ P+ G I VAP
Sbjct: 118 TLQYPDIVDGIIAVAP 133
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 110/280 (39%), Gaps = 28/280 (10%)
Query: 67 GVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSA 126
G +I+ K W + QP + + HG+ + E LA+ GY V A D G G S+
Sbjct: 8 GTQIYYKDW--GSGQP---IVFSHGWPLNADSW-ESQMIFLAAQGYRVIAHDRRGHGRSS 61
Query: 127 GLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGG---AVALKVHLKQPNAW 183
P +D + + + E+ + R + LFG S GG A + H A
Sbjct: 62 -----QPWSGNDMDTYADDLAQLIEHLDLRD--AVLFGFSTGGGEVARYIGRHGTARVAK 114
Query: 184 SGAILVAPMCKIADDMVPPFLVKQILIGI--ANILPKHKLVPQKDLAEAAFRDLKNRELT 241
+G I P + + P L ++ GI A++ + +L KDLA F
Sbjct: 115 AGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLY--KDLASGPFFGFNQPGAK 172
Query: 242 KYNVIV-----YKDKPRLRTALELLK--TTEGIERRLEKVSLPLLILHGENDTVTDPSVS 294
+V + A + +K + L+K+ +P L++HG+ D V P +
Sbjct: 173 SSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQVV-PIEA 231
Query: 295 KALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADI 334
+ A K +Y A H L + D + + A I
Sbjct: 232 SGIASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLLAFI 271
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 108 ASSGYGVFAMDYPGFGLSAGL--HGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQ 165
AS G G DY G G S G G I + V++H+ K + L G
Sbjct: 63 ASLGVGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHFKPEK---------AILVGS 113
Query: 166 SLGGAVAL------KVHLKQPNAWSGAILVAPMCKIADDMVPPFL 204
S GG +AL K P SG +L+AP D++ P L
Sbjct: 114 SXGGWIALRLIQELKARHDNPTQVSGXVLIAPAPDFTSDLIEPLL 158
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 104 ARKLASSGYGVFAMDYPGFGLSAGLHGYIPSFDRLV----DDVIEHYSNIKEYPEFRTLP 159
AR L SGYGV+ + G HG + D L D S + +
Sbjct: 42 ARALQRSGYGVYVPLFSG-------HGTVEPLDILTKGNPDIWWAESSAAVAHMTAKYAK 94
Query: 160 SFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFL 204
F+FG SLGG A+K P +G + +P+ +VP FL
Sbjct: 95 VFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFL 139
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 29/185 (15%)
Query: 134 SFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMC 193
+F V V E Y +K+ R F+ G S+GG + L + P+ + P+
Sbjct: 89 TFHDWVASVEEGYGWLKQ----RCQTIFVTGLSMGGTLTLYLAEHHPDICG----IVPIN 140
Query: 194 KIADDMVPPFLVKQILIGI--ANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDK 251
D + I G+ LP++ ++ DLKN ++ + + Y+
Sbjct: 141 AAVD-------IPAIAAGMTGGGELPRY--------LDSIGSDLKNPDVKE---LAYEKT 182
Query: 252 PRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILY 311
P + L+L + + +L+++ P LI + D V P + +++ SS +K+ +
Sbjct: 183 PT-ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRL 241
Query: 312 KDAFH 316
++++H
Sbjct: 242 RNSYH 246
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYG-DTCTFFFEGTARKLASSGYGVFAMDYPG 121
+ +G +F + LP + Q + V HG + T+ GT +LA +GY A+D PG
Sbjct: 12 IQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPG 71
Query: 122 FGLSAGLHGYIP-------SFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALK 174
G S P SF V D +E P + SL G +L
Sbjct: 72 LGHSKEAAAPAPIGELAPGSFLAAVVDALE------------LGPPVVISPSLSGMYSLP 119
Query: 175 VHLKQPNAWSGAILVAPMC 193
+ G + VAP+C
Sbjct: 120 FLTAPGSQLPGFVPVAPIC 138
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 48/293 (16%)
Query: 67 GVEIFCKSWLPETSQPKGLVCYCHGY------GDTCTFFFEGTARKLASSGYGVFAMDYP 120
GVEIF K W P ++ ++ + HG+ D FF + G+ V A D
Sbjct: 13 GVEIFYKDWGPRDAK---VIHFHHGWPLSSDDWDAQLLFF-------VNKGFRVVAHDRR 62
Query: 121 GFGLSAGL-HGYIPSFDRLVDD---VIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALK-V 175
G G S+ + G+ D DD V+E + T + G S GG ++ +
Sbjct: 63 GHGRSSQVWDGH--DMDHYADDAAAVVE---------KLGTHGAMHVGHSTGGGEVVRYI 111
Query: 176 HLKQPNAWSGAILVA--PMCKIADDMVPPFLVKQILIGIANILPKHKLVPQKDLAEAAFR 233
S A+L++ P + P K + + ++ D+ F
Sbjct: 112 ARHGERNVSKAVLISSVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFY 171
Query: 234 DLKNRELTKYNVIVYKDKPRLRTALELLKTTEGI--------ERRLEKVSLPLLILHGEN 285
NR K + V + R +GI L+ +++P+L++HG++
Sbjct: 172 GY-NRPGAKPSEGVIYNWWRQGMMGSTKAQYDGIVAFSQTDFTNDLKGITIPVLVIHGDD 230
Query: 286 DTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWL 338
D V P + K+ K I YK A H + P +V AD++ +L
Sbjct: 231 DQVV-PYADSGVLSAKLVKNGKLITYKGAPHGI----PTTHADKVNADLLEFL 278
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 86 VCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSAG 127
VC CHG+ ++ + + LA +GY V AMD G+G S+
Sbjct: 261 VCLCHGFPESW-YSWRYQIPALAQAGYRVLAMDMKGYGESSA 301
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 86 VCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSAG 127
VC CHG+ ++ + + LA +GY V AMD G+G S+
Sbjct: 42 VCLCHGFPES-WYSWRYQIPALAQAGYRVLAMDMKGYGESSA 82
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 86 VCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSAG 127
VC CHG+ ++ + + LA +GY V AMD G+G S+
Sbjct: 57 VCLCHGFPES-WYSWRYQIPALAQAGYRVLAMDMKGYGESSA 97
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 27/232 (11%)
Query: 75 WLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSAGLHGYIPS 134
W Q + HG+G + + SS + + +D PGFG S G S
Sbjct: 5 WWQTKGQGNVHLVLLHGWGLNAEVW--RCIDEELSSHFTLHLVDLPGFGRSRGFGAL--S 60
Query: 135 FDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQPNAWSGAILVA--PM 192
+ + V++ + + G +LGG VA ++ L P + VA P
Sbjct: 61 LADMAEAVLQQAPD----------KAIWLGWALGGLVASQIALTHPERVQALVTVASSPC 110
Query: 193 CKIADDMVPPFLVKQILIGIANILP-------KHKLVPQKDLAEAAFRDLKNRELTKYNV 245
D+ P + +L G L + L Q E A +D + + T
Sbjct: 111 FSARDEW--PGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVL-A 167
Query: 246 IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKAL 297
+ + L LE+LKT + + + L+ VS+P L L+G D + V L
Sbjct: 168 LPMPEVDVLNGGLEILKTVD-LRQPLQNVSMPFLRLYGYLDGLVPRKVVPML 218
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 37/259 (14%)
Query: 60 SYEVNSRGVEIFCKSWLPETSQPKGLVCYCHGY------GDTCTFFFEGTARKLASSGYG 113
SY GV+IF K W P + ++ + HG+ D FF + GY
Sbjct: 2 SYVTTKDGVQIFYKDWGPRDAP---VIHFHHGWPLSADDWDAQLLFF-------LAHGYR 51
Query: 114 VFAMDYPGFGLSAGL-HGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVA 172
V A D G G S+ + G+ D DDV +++ + G S GG
Sbjct: 52 VVAHDRRGHGRSSQVWDGH--DMDHYADDVAAVVAHLG------IQGAVHVGHSTGGGEV 103
Query: 173 LKVHLKQP-NAWSGAILVA--PMCKIADDMVPPFLVKQILIGIANILPKHKLVPQKDLAE 229
++ + P + + A+L+A P + P L K + G + ++ +D+
Sbjct: 104 VRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQFYRDVPA 163
Query: 230 AAFRDLKNRELTKYNVIVYKDKPRLRTALELLKTTEGI--------ERRLEKVSLPLLIL 281
F NR + + + + R +GI L+ + P+L++
Sbjct: 164 GPFYGY-NRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVM 222
Query: 282 HGENDTVTDPSVSKALYEK 300
HG++D + S L K
Sbjct: 223 HGDDDQIVPYENSGVLSAK 241
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 25/198 (12%)
Query: 109 SSGYGVFAMDYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLG 168
SS + + +D PGFG S G S + V++ + + G SLG
Sbjct: 37 SSHFTLHLVDLPGFGRSRGFGAL--SLADXAEAVLQQAPD----------KAIWLGWSLG 84
Query: 169 GAVALKVHLKQPNAWSGAILVA--PMCKIADDMVPPFLVKQILIGIANILPKHK------ 220
G VA ++ L P + VA P D+ P + +L G L +
Sbjct: 85 GLVASQIALTHPERVRALVTVASSPCFSARDEW--PGIKPDVLAGFQQQLSDDQQRTVER 142
Query: 221 -LVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTALELLKTTEGIERRLEKVSLPLL 279
L Q E A +D + + T + + L LE+LKT + + + L+ VS P L
Sbjct: 143 FLALQTXGTETARQDARALKKTVL-ALPXPEVDVLNGGLEILKTVD-LRQPLQNVSXPFL 200
Query: 280 ILHGENDTVTDPSVSKAL 297
L+G D + V L
Sbjct: 201 RLYGYLDGLVPRKVVPXL 218
>pdb|2QRU|A Chain A, Crystal Structure Of An Alpha/beta Hydrolase Superfamily
Protein From Enterococcus Faecalis
Length = 274
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 77 PETSQPKGLVCYCHGYG---DTCTFFFEGTARKLASSGYGVFAMDY---PGFGLSAGLHG 130
P T++P V Y HG G T + E S+GY V A+DY P + L
Sbjct: 21 PTTTEPTNYVVYLHGGGXIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNTKIDHILRT 80
Query: 131 YIPSFDRLVDDVIEHYS 147
+F L +++I++ S
Sbjct: 81 LTETFQLLNEEIIQNQS 97
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 45/234 (19%)
Query: 90 HGY-GDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSAGLHGYIPSFDRLVD-DVIEHYS 147
HG+ + T A L D+ G G S G + + + D + I +Y
Sbjct: 53 HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIEDANAILNY- 111
Query: 148 NIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQ 207
+K P R + +L G S GG VA + P+ +L+AP + D + Q
Sbjct: 112 -VKTDPHVRNI--YLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEG--NTQ 166
Query: 208 ILIGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTALELLKTTEGI 267
+ + +P +P KDL F LR A +L I
Sbjct: 167 GVTYNPDHIPDR--LPFKDLTLGGF--------------------YLRIAQQL-----PI 199
Query: 268 ERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEG 321
+ + P+ ++HG +DTV P+ SK Y++ +Y+++ L+EG
Sbjct: 200 YEVSAQFTKPVCLIHGTDDTVVSPNASKK-YDQ---------IYQNSTLHLIEG 243
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 67 GVEIFCKSWLPETSQPKGLVCYC-HGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLS 125
G +I SW P+ V C HG + ++ A LA+ GY V A D G G S
Sbjct: 13 GNQICLCSW----GSPEHPVVLCIHGILEQ-GLAWQEVALPLAAQGYRVVAPDLFGHGRS 67
Query: 126 AGLHGYIPSFDRL-----VDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQP 180
+ L + S+ L +D VI+ E P L G S+G +A + +P
Sbjct: 68 SHLE-MVTSYSSLTFLAQIDRVIQ---------ELPDQPLLLVGHSMGAMLATAIASVRP 117
Query: 181 NAWSGAILVAPMCKIADDMVPPFLVKQILIGIANI--LPKHKLVPQKDLAEAAFR 233
ILV + A++ V Q+ + + P+H + P D+A AA R
Sbjct: 118 KKIKELILVE-LPLPAEESKKESAVNQLTTCLDYLSSTPQHPIFP--DVATAASR 169
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 86 VCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGFGLSA 126
+C CHG+ ++ F + LA +G+ V A+D G+G S+
Sbjct: 259 LCLCHGFPESW-FSWRYQIPALAQAGFRVLAIDMKGYGDSS 298
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 96 CTFFFEGTARKLASSGYGVFAMDYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNIKEYPEF 155
C +E T LA +GY V A+D GF S+ Y SF +L + +
Sbjct: 58 CAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALLERLG----- 112
Query: 156 RTLPSFLFGQSLGGAVALKVHLKQPNAWSGAILVAPM 192
+ + G S GG +A + L P +LV P+
Sbjct: 113 -VARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 109 SSGYGVFAMDYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLG 168
+ + V A D GFG S Y V +E + + F S + G S+G
Sbjct: 56 AENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMG 113
Query: 169 GAVALKVHLKQPNAWSGAILV----APMCKIADDMVPPFLVKQILIGIANILPKHKLVPQ 224
GAV L++ ++ P + L+ APM + PP L + + +L P
Sbjct: 114 GAVTLQLVVEAPERFDKVALMGSVGAPM-----NARPPELAR-----LLAFYADPRLTPY 163
Query: 225 KDLAEAAFRDLKN----RELTKYNVIVYKDKPRLRTALELLKTTEGIERRLEKVSLP--- 277
++L + D +N E+ K V D P +R E++ E ++ +E + +P
Sbjct: 164 RELIHSFVYDPENFPGMEEIVKSRFEVAND-PEVRRIQEVM--FESMKAGMESLVIPPAT 220
Query: 278 -------LLILHGENDTVT 289
+L+ HG D +
Sbjct: 221 LGRLPHDVLVFHGRQDRIV 239
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 162 LFGQSLGGAVALKVHLKQPNAWSGAILVAPMCK 194
+FG S+GG AL LK P + AP+C
Sbjct: 145 IFGHSMGGHGALICALKNPGKYKSVSAFAPICN 177
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 112 YGVFAMDYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAV 171
Y V AMD GFG +A P + D I H + + F S + G S+GGA
Sbjct: 66 YRVIAMDMLGFGKTAK-----PDIEYTQDRRIRHLHDFIKAMNFDGKVS-IVGNSMGGAT 119
Query: 172 ALKVHLKQPNAWSGAILVAP---MCKIADDMVP 201
L V + + +L+ + +I +D+ P
Sbjct: 120 GLGVSVLHSELVNALVLMGSAGLVVEIHEDLRP 152
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 86 VCYCHGYGDTCTFF--FEGTARKLASSGYGVFAMDYPGFGLSAGLHGYIPSFD---RLVD 140
V HG G T + F L +GY V +D PG+G S + D R++
Sbjct: 39 VVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILK 98
Query: 141 DVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQP 180
V++ K + L G S+GG ++ LK P
Sbjct: 99 SVVDQLDIAKIH---------LLGNSMGGHSSVAFTLKWP 129
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 276 LPLLILHGENDTVTDPSVSKALYEKASSK 304
+P+L LHG D V DP++ +A ++ ++
Sbjct: 167 IPVLHLHGSQDDVVDPALGRAAHDALQAQ 195
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 58/223 (26%)
Query: 120 PGFGLSAGLHGYI-PSFDR-----LVDDVIEHYSNIKEY--PEFRTLPSF---------- 161
PGFG + + P+F+ L D V +S+++ Y ++TL +
Sbjct: 27 PGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEA 86
Query: 162 -------LFGQSLGGAVALKVHLKQPNAWSGAILVAPM-CKIADDMVPP----------- 202
G S+G + + +++P +S ++V P C + D PP
Sbjct: 87 LDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLND---PPEYYGGFEEEQL 143
Query: 203 ----FLVKQILIGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTAL 258
++++ IG A + ++ Q D E +L++R + VI A
Sbjct: 144 LGLLEMMEKNYIGWATVFAA-TVLNQPDRPEIK-EELESRFCSTDPVI----------AR 191
Query: 259 ELLKTTEGIERR--LEKVSLPLLILHGENDTVTDPSVSKALYE 299
+ K + R L KV++P LIL +D + +V K +++
Sbjct: 192 QFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQ 234
>pdb|3CV2|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
pdb|3CV2|B Chain B, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 532
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 37 KDIQLNIDHILLKATCDGLKTEESYEVNSRGVEIFCKSWL 76
+D + D +L A CDG +TEE N R + ++W+
Sbjct: 395 QDAPITADQLL--APCDGERTEEGMRANIRVAVQYIEAWI 432
>pdb|3CUZ|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
pdb|3CV1|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 532
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 37 KDIQLNIDHILLKATCDGLKTEESYEVNSRGVEIFCKSWL 76
+D + D +L A CDG +TEE N R + ++W+
Sbjct: 395 QDAPITADQLL--APCDGERTEEGMRANIRVAVQYIEAWI 432
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 267 IERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSL 318
+ LEK ++P LI+HG++D S L +A + K L K H L
Sbjct: 213 FRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA-IPNSKVALIKGGPHGL 263
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 263 TTEGIERRLEKVSLPLLILHGEN--DTVTDPSVSKALY--EKASSKDKKCILYK------ 312
T E +ER L+K+ + +HG++ + ++K L + AS +K +L K
Sbjct: 408 TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECG 467
Query: 313 DAFHSLLEGEPDDMIIRVFADIISWLDDHSRSSTDS 348
AF S LEG DM + DI+ H ++ +DS
Sbjct: 468 AAFTSKLEGMFKDM--ELSKDIMVHFKQHMQNQSDS 501
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 263 TTEGIERRLEKVSLPLLILHGEN--DTVTDPSVSKALY--EKASSKDKKCILYK------ 312
T E +ER L+K+ + +HG++ + ++K L + AS +K +L K
Sbjct: 425 TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECG 484
Query: 313 DAFHSLLEGEPDDMIIRVFADIISWLDDHSRSSTDS 348
AF S LEG DM + DI+ H ++ +DS
Sbjct: 485 AAFTSKLEGMFKDM--ELSKDIMVHFKQHMQNQSDS 518
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 134 SFDRLVDDVIEHYSN----IKEYPEF-RTLPSFLFGQSLGGAVALKVHLKQPNAWSGAIL 188
S ++L D ++EHY + Y E+ R + L L G L + LKQP AW+ +
Sbjct: 61 SAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELC 120
Query: 189 VAPMCKIADD 198
C++ D
Sbjct: 121 RQVDCRLILD 130
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGF 122
+N RG I + P Q LV HG+ ++ + + LA +GY V A+D G+
Sbjct: 14 LNCRGTRIHAVADSPPDQQGP-LVVLLHGFPESW-YSWRHQIPALAGAGYRVVAIDQRGY 71
Query: 123 GLSA 126
G S+
Sbjct: 72 GRSS 75
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 63 VNSRGVEIFCKSWLPETSQPKGLVCYCHGYGDTCTFFFEGTARKLASSGYGVFAMDYPGF 122
+N RG I + P Q LV HG+ ++ + + LA +GY V A+D G+
Sbjct: 8 LNCRGTRIHAVADSPPDQQGP-LVVLLHGFPESW-YSWRHQIPALAGAGYRVVAIDQRGY 65
Query: 123 GLSA 126
G S+
Sbjct: 66 GRSS 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,435,736
Number of Sequences: 62578
Number of extensions: 445035
Number of successful extensions: 1139
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 43
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)