BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018985
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
G G LG G++ D L P + + G + V+ G H +++ SG
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSG 232
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 63
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 122
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDG 180
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 276
Query: 175 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 332
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 333 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 374
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
G G LG G++ D L P + + G + V+ G H +++ SG
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSG 244
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 75
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 134
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 135 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDG 192
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 236
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 353
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIEALSVDG 382
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 288
Query: 175 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 344
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 345 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 386
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
G G LG G++ D L P + + G + V+ G H +++ SG
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSG 232
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 63
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 122
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDG 180
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 7/229 (3%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 69
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
G G LG G++ D L P + + G V+ G H +++ SG
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKXSXVACGWRHTISVSYSG 234
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 9/232 (3%)
Query: 114 MQITTGRYHTLLISNS--SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ +T G HT+ S S V+S G G LGHG ++ + I + Q++
Sbjct: 61 VSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACG 119
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
++H V G+V + G N + G DT + P+ ++A +G+ K V AG T +
Sbjct: 120 DSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKXVAAGAEHTAAV 178
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYMLAVTGNGVV 290
T G ++ G +G LG GD DR P+ + E S V A G + ++V+ +G +
Sbjct: 179 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXV--ACGWRHTISVSYSGAL 236
Query: 291 YSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
Y++G LGHG+ D L P ++ + ++S G H AL S G
Sbjct: 237 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNS--FISQISGGARHTXALTSDG 286
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 65
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 124
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 125 AVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKXVAAGAEHTAAVTEDG 182
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ V+ H
Sbjct: 168 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKXSXVACGWRH 226
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 227 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGARHTXALTSD 285
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 286 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 343
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIEALSVDG 372
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 109/235 (46%), Gaps = 8/235 (3%)
Query: 113 NMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ + +G H L L S V+S G + G LGHG + C I VV V+A
Sbjct: 109 KVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF--TG 229
H+A V +G ++T G GH D+ + +P+LVEAL+G + G T
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEALQGHRVVDIACGSGDAQTL 226
Query: 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV 289
LT V + G +G+LG G + P I L +G VV++ G + +A+T +G
Sbjct: 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG-VVKVECGSQFSVALTKSGA 285
Query: 290 VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
VY++G G LGHG +PR +Q +G V+ ++ G H V G V
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGL--QGKKVIAIATGSLHCVCCTEDGEV 338
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 4/172 (2%)
Query: 113 NMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
++ +G TL L + +V+S G G LG G + C +I+ + VV+V
Sbjct: 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG-SDGCKVPMKIDSLTGLGVVKVECG 273
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ + +SG V+T G GH ++ + RPR V+ L+G + G
Sbjct: 274 SQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCC 332
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLA 283
T G V+T G N GQLG G T P+ +A L+ V ++A G ++ LA
Sbjct: 333 TEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGK-KVNRVACGSAHTLA 383
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 207 PRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266
P EAL + Q+ G +T G ++ G G+LG G T TP + ++
Sbjct: 44 PTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQ 103
Query: 267 EVG-SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325
V V + +G + LA++ G VYS+G + LGHG + +PR I++ R GI V
Sbjct: 104 HVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLR--GIEV 161
Query: 326 VRVSAGDEHVVALDSSG 342
V V+AG H + ++G
Sbjct: 162 VDVAAGGAHSACVTAAG 178
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 225 LNFTGFLTIRGHVHTCGSNTHGQLG--HGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYM 281
L F G TI G H N GQLG G + PTP +++A L V Q+ G +
Sbjct: 14 LYFQGSGTIYGWGH----NHRGQLGGIEGAKVKVPTPCEALATLRPV----QLIGGEQTL 65
Query: 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 341
AVT +G +Y+ G G+ LG G P +++ + I V V++G +H +AL S
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 342 GYV 344
G V
Sbjct: 126 GEV 128
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 19/237 (8%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETT----------QCVSFTRINFPSAAH 164
I +G H ++++ + VF+ G + G LG E + + T++ A
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 165 VVQVSASENHAAFVLQSGQ--VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT 222
+ A+ N+ F+ +S ++ G N+ H + + LK + + +
Sbjct: 244 FEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDI--RHIA 300
Query: 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYM 281
G + T LT G +G+LG GD D P + L E +V + G
Sbjct: 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE--KIVSVGCGEVCS 358
Query: 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
AVT +G +YS+GSG N LG G+ DEL+P + + +G H++ S G +H + L
Sbjct: 359 YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 232 TIRGHVHTCGSNTHGQLGHG-DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T+ G+V CG+ GQLG G D L+R K ++P+ + V I+AG + L +T +G +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 291 YSFGSGSNFCLGHGEQHD--ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
YSFG LG D E +P I + + +SAGD H L G V
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGK----ALCISAGDSHSACLLEDGRV 148
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 95 RFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVS 153
+ L V D V+ SAG M H L+++ S ++S G + G LG +T++ S
Sbjct: 66 KRLSPVAGIPDAVDISAGGM-------HNLVLTKSGDIYSFGCNDEGALGR--DTSEDGS 116
Query: 154 FTR---INFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIF--RPR 208
++ I+ P A + +SA ++H+A +L+ G+VF G SF H + I +
Sbjct: 117 ESKPDLIDLPGKA--LCISAGDSHSACLLEDGRVFAWG---SFRDSHGNMGLTIDGNKRT 171
Query: 209 LVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 250
++ ++G C + +G + LT G V T G GQLG
Sbjct: 172 PIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGR 213
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVP-CKQVTAGLNFTGFLTIRGHVHTC 240
G V CG+ G I + + + G+P ++AG LT G +++
Sbjct: 43 GNVLVCGNGD---VGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSF 99
Query: 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
G N G LG DT + + ++ G + I+AG S+ + +G V+++GS F
Sbjct: 100 GCNDEGALGR-DTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS---FR 155
Query: 301 LGHGEQHDELQPRAIQTFRRKGIHVVR------VSAGDEHVVALDSSGYV 344
HG I +R I ++ +++G +H+V L ++G V
Sbjct: 156 DSHGNMG-----LTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKV 200
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 104/261 (39%), Gaps = 38/261 (14%)
Query: 105 DIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 163
D+V+ AG M HT+ +S S V+S G + G LG + +
Sbjct: 49 DVVQAEAGGM-------HTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQE 100
Query: 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGV 216
VVQVSA ++H A + G+VF G SF RD N P+ + + V+ V
Sbjct: 101 KVVQVSAGDSHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDV 153
Query: 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLE 266
P +V +G + LT G ++T G GQLG L+R L+
Sbjct: 154 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 213
Query: 267 EVGSVVQIA-----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
GS + G + A++ G VY FG + LG P+ + +F+
Sbjct: 214 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 273
Query: 322 GIHVVRVSAGDEHVVALDSSG 342
V S G H V +DS G
Sbjct: 274 TKSWVGFSGGQHHTVCMDSEG 294
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 234 RGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++ G +G+LG G+ ++ P I+ L V SV A G S AVT +G V++
Sbjct: 293 EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV---ACGASVGYAVTKDGRVFA 349
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
+G G+N+ LG G+ D P + + + V+ VS+G +H V L
Sbjct: 350 WGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 232 TIRGHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G V
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQV 69
Query: 291 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSL 346
YSFG LG + E+ P ++ + VV+VSAGD H AL G V L
Sbjct: 70 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFL 123
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 104/261 (39%), Gaps = 38/261 (14%)
Query: 105 DIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 163
D+V+ AG M HT+ +S S V+S G + G LG + +
Sbjct: 60 DVVQAEAGGM-------HTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQE 111
Query: 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGV 216
VVQVSA ++H A + G+VF G SF RD N P+ + + V+ V
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDV 164
Query: 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLE 266
P +V +G + LT G ++T G GQLG L+R L+
Sbjct: 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 224
Query: 267 EVGSVVQIA-----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
GS + G + A++ G VY FG + LG P+ + +F+
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 284
Query: 322 GIHVVRVSAGDEHVVALDSSG 342
V S G H V +DS G
Sbjct: 285 TKSWVGFSGGQHHTVCMDSEG 305
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPLEEVGSVVQIAAGPSY 280
+ G + T + G ++ G +G+LG G+ ++ P I+ L V SV A G S
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV---ACGASV 348
Query: 281 MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
AVT +G V+++G G+N+ LG G+ D P + + + V+ VS+G +H V L
Sbjct: 349 GYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 232 TIRGHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G V
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQV 80
Query: 291 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSL 346
YSFG LG + E+ P ++ + VV+VSAGD H AL G V L
Sbjct: 81 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFL 134
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 24/244 (9%)
Query: 114 MQITTGRYHTLLISNSS-VFSCGSSLCGVLGHG-PETTQCVSFTRINFPSAAHVVQVSAS 171
+Q+ G+ H L + VF+ G+ LG E + + F HV +++
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASG 265
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP---IFRPRLVEALKGVPCKQVTAGLNFT 228
ENH + + ++ + G N CG + + +P+ + V + + AG + +
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
Query: 229 GFLTIRGHVHTCGSNTHGQLG--------------HGDTLDRPTPKSIAPLEEVGSVVQI 274
L+ G +++CG ++G HG P P L V +
Sbjct: 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK---LNNVPKFKSV 382
Query: 275 AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHVVRVSAGDE 333
AAG + +AV NG+ YS+G G + +G G D+ + P I+ + +++ V G +
Sbjct: 383 AAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQ 442
Query: 334 HVVA 337
V+
Sbjct: 443 FSVS 446
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 42/220 (19%)
Query: 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFC---CGHRDTNRPIFRPRLVEALKGVPCK 219
+H++ H +Q +F C S C G N+ + RPRL L K
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIF-CWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAK 68
Query: 220 QVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD---------------------- 255
++ G T L +V + G N G LG DT +
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGR-DTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 256 --RPTP-----KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQ 306
TP +S PL E VVQ+AA + A+ NG VY++G+ + LG +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 307 HDELQ--PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
++Q P + TF + ++V+++ G +H++ LD G V
Sbjct: 188 KIKIQKTPWKVPTFSK--YNIVQLAPGKDHILFLDEEGMV 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 42/272 (15%)
Query: 114 MQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQ---------------------- 150
+ G HTL L S+V+S G + G LG +
Sbjct: 70 ISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNEL 129
Query: 151 ---CVSFTRINFPSAAH---VVQVSASENHAAFVLQSGQVFTCGD---NSSFCCGHRDTN 201
R +FP A VVQ++A++N + + +G+V+ G N ++D
Sbjct: 130 ESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKI 189
Query: 202 RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261
+ P V Q+ G + FL G V G+ QLG ++R K+
Sbjct: 190 KIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKT 248
Query: 262 IAPLE-EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320
+ P + V IA+G ++ A+T + + S+G G ++++ A+ T +
Sbjct: 249 LDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQ---FGQCGVSEDVEDGALVTKPK 305
Query: 321 K-----GIHVVRVSAGDEHVVALDSSGYVSLC 347
+ + + ++AG+ H + L G + C
Sbjct: 306 RLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 337
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQ 167
T +G I G YH+L + + V + G + G + P+ A V
Sbjct: 63 TQSGVDAIAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVD 107
Query: 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ-- 220
A+ A++ L+ G+V GD+S T P V AL G + K
Sbjct: 108 AIAAGAWASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGG 162
Query: 221 -VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGS 270
+ G N+ G T+ + + G + H L D ++ P E +
Sbjct: 163 VIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSG 222
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGS 295
V IA+G Y LA+ NG V ++GS
Sbjct: 223 VSAIASGEWYSLALK-NGKVIAWGS 246
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQ 167
T +G I G YH+L + + V + G + G + P+ A V
Sbjct: 61 TQSGVDAIAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVD 105
Query: 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ-- 220
A+ A++ L+ G+V GD+S T P V AL G + K
Sbjct: 106 AIAAGAWASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGG 160
Query: 221 -VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGS 270
+ G N+ G T+ + + G + H L D ++ P E +
Sbjct: 161 VIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSG 220
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGS 295
V IA+G Y LA+ NG V ++GS
Sbjct: 221 VSAIASGEWYSLALK-NGKVIAWGS 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,246,965
Number of Sequences: 62578
Number of extensions: 410511
Number of successful extensions: 1218
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 52
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)