Query 018985
Match_columns 348
No_of_seqs 328 out of 2035
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 8.5E-41 1.8E-45 307.2 21.6 275 66-348 121-417 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 9.1E-40 2E-44 300.4 23.8 268 65-348 65-365 (476)
3 KOG1427 Uncharacterized conser 100.0 1.3E-40 2.8E-45 288.2 13.0 234 112-348 57-307 (443)
4 KOG1427 Uncharacterized conser 100.0 7.8E-38 1.7E-42 271.0 13.3 260 67-341 76-399 (443)
5 KOG0783 Uncharacterized conser 100.0 5.8E-28 1.3E-32 232.7 13.7 261 68-347 142-413 (1267)
6 KOG0783 Uncharacterized conser 99.9 8.2E-27 1.8E-31 224.8 10.4 214 127-347 140-359 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.4E-22 3E-27 202.6 21.9 244 65-348 495-844 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 8.4E-23 1.8E-27 204.1 18.7 221 106-337 563-891 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 9.9E-13 2.1E-17 87.7 5.9 51 181-231 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 2E-12 4.4E-17 86.2 6.0 51 128-178 1-51 (51)
11 KOG0941 E3 ubiquitin protein l 99.2 8.1E-14 1.7E-18 136.7 -7.5 174 162-342 13-197 (850)
12 PF13540 RCC1_2: Regulator of 99.2 1.5E-11 3.3E-16 71.9 4.6 30 165-194 1-30 (30)
13 PF13540 RCC1_2: Regulator of 99.2 2.1E-11 4.5E-16 71.3 4.6 30 218-247 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 99.1 1.2E-12 2.6E-17 128.6 -6.4 172 112-288 15-197 (850)
15 PF12937 F-box-like: F-box-lik 95.9 0.0054 1.2E-07 39.5 1.8 33 10-44 1-33 (47)
16 KOG3669 Uncharacterized conser 95.5 0.41 9E-06 46.7 13.7 115 58-187 179-299 (705)
17 KOG3669 Uncharacterized conser 95.1 1.3 2.8E-05 43.4 15.7 70 164-240 228-299 (705)
18 KOG0315 G-protein beta subunit 93.7 4.7 0.0001 35.7 18.4 63 223-297 134-198 (311)
19 PHA03098 kelch-like protein; P 90.0 10 0.00023 37.7 14.8 22 9-30 145-166 (534)
20 PF00646 F-box: F-box domain; 89.5 0.12 2.7E-06 33.0 0.4 32 10-43 3-34 (48)
21 PF11725 AvrE: Pathogenicity f 89.5 1.8 3.8E-05 47.8 8.9 111 211-342 698-815 (1774)
22 KOG0943 Predicted ubiquitin-pr 88.1 0.022 4.7E-07 59.6 -5.8 128 112-244 375-506 (3015)
23 PF11725 AvrE: Pathogenicity f 86.5 15 0.00033 41.0 13.5 63 270-346 704-768 (1774)
24 smart00256 FBOX A Receptor for 85.7 0.37 8.1E-06 29.3 0.9 30 13-44 1-30 (41)
25 PF07569 Hira: TUP1-like enhan 85.5 6.5 0.00014 34.4 8.9 30 215-244 12-41 (219)
26 KOG0943 Predicted ubiquitin-pr 84.8 0.058 1.3E-06 56.6 -4.8 127 214-348 372-503 (3015)
27 PF07569 Hira: TUP1-like enhan 84.6 6.2 0.00013 34.5 8.3 29 269-297 13-41 (219)
28 KOG0315 G-protein beta subunit 83.4 33 0.00071 30.6 13.8 57 278-347 136-194 (311)
29 KOG0646 WD40 repeat protein [G 83.0 46 0.001 32.1 17.0 206 111-347 82-304 (476)
30 PHA02713 hypothetical protein; 82.2 36 0.00077 34.3 13.7 18 9-26 163-180 (557)
31 smart00706 TECPR Beta propelle 78.5 3.8 8.2E-05 24.2 3.4 25 163-187 8-33 (35)
32 PLN03215 ascorbic acid mannose 77.2 48 0.001 31.5 11.9 34 10-45 4-38 (373)
33 KOG4441 Proteins containing BT 76.1 25 0.00054 35.6 10.4 60 230-295 471-530 (571)
34 KOG4441 Proteins containing BT 72.3 66 0.0014 32.5 12.4 17 122-138 326-342 (571)
35 smart00706 TECPR Beta propelle 71.6 8.1 0.00018 22.7 3.6 25 269-293 8-33 (35)
36 KOG1240 Protein kinase contain 68.7 1.6E+02 0.0035 32.4 14.2 123 164-297 1050-1182(1431)
37 PLN02153 epithiospecifier prot 68.4 1E+02 0.0022 28.6 13.1 18 121-138 130-147 (341)
38 KOG0291 WD40-repeat-containing 67.8 1.6E+02 0.0034 30.6 18.4 123 163-298 298-424 (893)
39 PHA02713 hypothetical protein; 66.4 81 0.0018 31.8 11.6 16 122-137 345-360 (557)
40 KOG0649 WD40 repeat protein [G 65.6 54 0.0012 29.2 8.6 31 269-300 63-93 (325)
41 PF04841 Vps16_N: Vps16, N-ter 65.3 1.3E+02 0.0029 28.9 18.7 69 112-189 82-154 (410)
42 TIGR01063 gyrA DNA gyrase, A s 64.1 2E+02 0.0044 30.5 17.7 161 170-345 544-713 (800)
43 PF04762 IKI3: IKI3 family; I 63.7 1.8E+02 0.0038 31.5 13.9 28 163-190 427-456 (928)
44 COG4257 Vgb Streptogramin lyas 63.3 1.1E+02 0.0023 28.0 10.2 107 171-301 62-173 (353)
45 COG4257 Vgb Streptogramin lyas 63.2 1.1E+02 0.0025 27.8 10.3 134 120-294 63-206 (353)
46 PF13013 F-box-like_2: F-box-l 63.0 3.5 7.6E-05 31.7 0.9 33 9-43 21-53 (109)
47 TIGR02658 TTQ_MADH_Hv methylam 62.9 1.4E+02 0.003 28.2 15.3 73 113-189 40-124 (352)
48 PF02239 Cytochrom_D1: Cytochr 62.0 1.2E+02 0.0027 28.7 11.3 113 113-241 29-156 (369)
49 PRK14131 N-acetylneuraminic ac 61.7 1.1E+02 0.0023 29.1 11.0 17 121-137 131-148 (376)
50 PHA03098 kelch-like protein; P 60.8 1.3E+02 0.0028 29.9 11.9 18 121-138 335-352 (534)
51 PLN02153 epithiospecifier prot 60.7 1.4E+02 0.0031 27.6 19.9 16 122-137 79-94 (341)
52 PHA02790 Kelch-like protein; P 58.0 75 0.0016 31.3 9.5 17 226-243 355-371 (480)
53 KOG1900 Nuclear pore complex, 56.5 3.2E+02 0.0069 30.4 14.4 159 127-302 97-278 (1311)
54 PRK05560 DNA gyrase subunit A; 54.5 2.9E+02 0.0063 29.3 17.6 160 170-344 546-715 (805)
55 PF12341 DUF3639: Protein of u 50.7 44 0.00095 18.7 3.8 24 163-186 2-25 (27)
56 PF06739 SBBP: Beta-propeller 50.3 19 0.00041 21.8 2.5 19 226-244 15-33 (38)
57 PF02239 Cytochrom_D1: Cytochr 49.8 1.7E+02 0.0038 27.7 10.2 123 158-294 22-156 (369)
58 KOG2106 Uncharacterized conser 47.6 2.9E+02 0.0064 27.3 12.8 93 164-280 248-341 (626)
59 KOG1034 Transcriptional repres 44.1 55 0.0012 30.3 5.4 57 177-242 324-382 (385)
60 KOG1230 Protein containing rep 43.9 2.4E+02 0.0052 27.3 9.6 111 226-348 124-249 (521)
61 TIGR02658 TTQ_MADH_Hv methylam 41.9 3.1E+02 0.0067 25.9 15.8 78 161-242 36-124 (352)
62 PF13418 Kelch_4: Galactose ox 39.2 33 0.00073 21.5 2.5 18 225-242 3-20 (49)
63 PF03785 Peptidase_C25_C: Pept 38.6 71 0.0015 23.1 4.2 39 104-142 9-49 (81)
64 KOG1240 Protein kinase contain 38.4 6E+02 0.013 28.3 17.0 76 111-192 1049-1130(1431)
65 PF03785 Peptidase_C25_C: Pept 38.3 57 0.0012 23.5 3.7 34 163-196 16-50 (81)
66 cd00819 PEPCK_GTP Phosphoenolp 37.2 87 0.0019 31.4 6.0 57 180-244 283-339 (579)
67 PF01436 NHL: NHL repeat; Int 37.1 65 0.0014 17.7 3.2 18 174-191 5-22 (28)
68 KOG1274 WD40 repeat protein [G 37.0 5.5E+02 0.012 27.4 14.6 68 170-240 13-81 (933)
69 PF08450 SGL: SMP-30/Gluconola 36.4 2.9E+02 0.0062 24.0 10.8 57 279-340 186-244 (246)
70 PRK05560 DNA gyrase subunit A; 35.9 5.6E+02 0.012 27.2 21.4 159 121-293 549-718 (805)
71 TIGR03300 assembly_YfgL outer 34.9 3.7E+02 0.0081 25.0 10.1 15 279-293 362-376 (377)
72 TIGR01063 gyrA DNA gyrase, A s 32.7 6.3E+02 0.014 26.9 22.1 159 121-294 547-716 (800)
73 cd00200 WD40 WD40 domain, foun 32.2 3E+02 0.0066 23.0 23.2 182 112-347 95-288 (289)
74 TIGR03548 mutarot_permut cycli 31.8 2.9E+02 0.0062 25.3 8.5 17 279-296 116-132 (323)
75 KOG1900 Nuclear pore complex, 31.8 6.1E+02 0.013 28.3 11.5 155 176-347 93-269 (1311)
76 KOG0649 WD40 repeat protein [G 31.8 3.8E+02 0.0083 24.0 8.7 47 215-262 62-109 (325)
77 TIGR03548 mutarot_permut cycli 31.5 4.1E+02 0.0088 24.3 14.4 18 226-244 116-133 (323)
78 TIGR01062 parC_Gneg DNA topois 31.1 6.5E+02 0.014 26.5 14.9 150 175-347 497-651 (735)
79 KOG1034 Transcriptional repres 30.6 1.1E+02 0.0023 28.5 5.1 54 127-189 327-382 (385)
80 PF10168 Nup88: Nuclear pore c 30.0 6.7E+02 0.015 26.3 12.5 120 227-346 34-175 (717)
81 PF04762 IKI3: IKI3 family; I 29.9 7.5E+02 0.016 26.9 18.4 29 108-136 424-455 (928)
82 PRK14131 N-acetylneuraminic ac 28.9 5E+02 0.011 24.4 18.2 18 173-190 131-148 (376)
83 KOG0289 mRNA splicing factor [ 28.6 2.7E+02 0.0058 27.0 7.4 67 226-295 350-418 (506)
84 KOG2997 F-box protein FBX9 [Ge 28.4 25 0.00054 32.4 0.7 50 8-59 105-157 (366)
85 PF08450 SGL: SMP-30/Gluconola 28.4 3.9E+02 0.0085 23.1 11.3 19 224-242 184-202 (246)
86 KOG0646 WD40 repeat protein [G 28.4 5.7E+02 0.012 25.0 14.4 168 113-297 126-308 (476)
87 PF07646 Kelch_2: Kelch motif; 28.1 66 0.0014 20.2 2.6 17 121-137 4-20 (49)
88 PLN03215 ascorbic acid mannose 27.7 2.9E+02 0.0063 26.3 7.7 60 113-188 162-225 (373)
89 KOG1408 WD40 repeat protein [F 27.3 1.1E+02 0.0024 31.6 4.9 98 116-240 138-246 (1080)
90 KOG0296 Angio-associated migra 26.7 5.5E+02 0.012 24.3 12.9 22 121-142 160-183 (399)
91 KOG0289 mRNA splicing factor [ 26.2 1.4E+02 0.003 28.8 5.2 66 278-347 349-416 (506)
92 TIGR03547 muta_rot_YjhT mutatr 25.7 1.9E+02 0.0041 26.8 6.2 17 121-137 110-127 (346)
93 KOG0307 Vesicle coat complex C 25.3 74 0.0016 34.2 3.5 33 270-302 255-290 (1049)
94 PF13938 DUF4213: Domain of un 24.8 95 0.0021 22.5 3.2 23 213-235 9-31 (87)
95 TIGR03300 assembly_YfgL outer 23.9 5.9E+02 0.013 23.7 13.1 57 278-347 320-376 (377)
96 cd00200 WD40 WD40 domain, foun 23.7 4.4E+02 0.0094 22.0 23.9 146 112-296 11-165 (289)
97 PF04841 Vps16_N: Vps16, N-ter 23.5 6.7E+02 0.014 24.1 15.0 71 163-242 81-154 (410)
98 KOG0291 WD40-repeat-containing 22.3 9.3E+02 0.02 25.4 20.7 121 113-246 300-425 (893)
99 KOG0307 Vesicle coat complex C 21.9 1.4E+02 0.003 32.2 4.7 25 324-348 255-282 (1049)
100 KOG0308 Conserved WD40 repeat- 21.7 8.9E+02 0.019 24.9 12.0 71 227-300 175-247 (735)
101 PF06204 CBM_X: Putative carbo 20.5 2.4E+02 0.0052 19.4 4.3 24 324-347 26-49 (66)
102 KOG2106 Uncharacterized conser 20.2 8.7E+02 0.019 24.2 12.5 54 218-292 249-303 (626)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=8.5e-41 Score=307.16 Aligned_cols=275 Identities=24% Similarity=0.322 Sum_probs=214.1
Q ss_pred ccceeeeeecccccceeeecc-----cCCcccccccccccccccccccC------CCCcEEEEecCCeEEEE-ECCeEEE
Q 018985 66 ALHSIYAGMSRNVQIELLNRC-----NGNWKRVLRFLQSVEHSSDIVET------SAGNMQITTGRYHTLLI-SNSSVFS 133 (348)
Q Consensus 66 ~~~~~~~~~g~n~~g~l~~~~-----~~~~~~~~~~~~~~~~~p~~~~~------~~~i~~ia~G~~h~~~l-~~G~vy~ 133 (348)
.++.+|+ ||.|.+|+|+... ..+-+....-....+..|..++. ..++++++||.+++++| ++|+||+
T Consensus 121 ~Dg~lys-wG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~ 199 (476)
T COG5184 121 HDGNLYS-WGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYS 199 (476)
T ss_pred CCCCEEE-eccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEE
Confidence 4678999 9999999998633 11111111112224455667766 44799999999999999 9999999
Q ss_pred EeCCCCCcccCCCCCc---eeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEe
Q 018985 134 CGSSLCGVLGHGPETT---QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLV 210 (348)
Q Consensus 134 wG~n~~gqlG~~~~~~---~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v 210 (348)
||.+..+.++.+.... ....++|+.++ ...|+++++|.+|.++|+++|+||+||+|.+||||....++ ...+.++
T Consensus 200 ~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~-~~~~~lv 277 (476)
T COG5184 200 WGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER-LKLVVLV 277 (476)
T ss_pred ecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhh-ccccccc
Confidence 9999888888774333 12446666666 56899999999999999999999999999999999887764 3333333
Q ss_pred cc-cCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC----CCCceEecCCCCCCCEEEEEecCceeEEEE
Q 018985 211 EA-LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAAGPSYMLAVT 285 (348)
Q Consensus 211 ~~-~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~----~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt 285 (348)
.. +.-..|++|+||.+|++||+++|+||+||.|.+||||.++... ...|.....+.. ..|..|++|..|+++|.
T Consensus 278 ~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~-~~i~~is~ge~H~l~L~ 356 (476)
T COG5184 278 GDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG-VTICSISAGESHSLILR 356 (476)
T ss_pred CChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCC-ceEEEEecCcceEEEEe
Confidence 22 2223479999999999999999999999999999999983322 233444444433 46899999999999999
Q ss_pred cCCcEEEEeCCCCCccCCCC--CCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 286 GNGVVYSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 286 ~~g~vy~wG~n~~gqLG~~~--~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
.+|.||+||+++.+|||..+ +.....|+++... .++.+|+||..|+++.+.+|.||+||
T Consensus 357 ~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~----~~~~~v~~gt~~~~~~t~~gsvy~wG 417 (476)
T COG5184 357 KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA----IKLEQVACGTHHNIARTDDGSVYSWG 417 (476)
T ss_pred cCceEEEecCCccccccCcccceeecCCccccccc----cceEEEEecCccceeeccCCceEEec
Confidence 99999999999999999988 4555566666532 26999999999999999999999998
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=9.1e-40 Score=300.37 Aligned_cols=268 Identities=22% Similarity=0.256 Sum_probs=212.5
Q ss_pred hccceeeeeecccccceeeecccCCcccccccccccccccccccCC----CCcEEEEecCCeEEEE-ECCeEEEEeCCCC
Q 018985 65 CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETS----AGNMQITTGRYHTLLI-SNSSVFSCGSSLC 139 (348)
Q Consensus 65 ~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~ 139 (348)
.....+|. ||.|...+|+-...+.- ...|...+.. ..|++++||+.|+++| +||.||+||.|..
T Consensus 65 ~~~~~v~~-~Gsn~~~eLGlg~de~~----------~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 65 VKMASVYS-WGSNGMNELGLGNDETK----------VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hheeeeEE-EecCcceeeccCCchhc----------ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 44578999 99999999985433311 1123333322 5699999999999999 9999999999999
Q ss_pred CcccCCCC---------------CceeeceEEeecCC----CCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCC
Q 018985 140 GVLGHGPE---------------TTQCVSFTRINFPS----AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT 200 (348)
Q Consensus 140 gqlG~~~~---------------~~~~~~~~~v~~~~----~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 200 (348)
|+||+... ......|..++... ..++++++||.+++++|+++|+||+||....+.++.+..
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~ 213 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSY 213 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccc
Confidence 99998761 11234555565522 238999999999999999999999999999998887743
Q ss_pred CC-----ceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEE
Q 018985 201 NR-----PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA 275 (348)
Q Consensus 201 ~~-----~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia 275 (348)
.. ..+.|..+. ...|+++++|.+|.++|+++|+||+||+|..||||....+....+..+..+.....|++|+
T Consensus 214 ~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~va 290 (476)
T COG5184 214 KNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVA 290 (476)
T ss_pred cccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcc
Confidence 31 123444443 4579999999999999999999999999999999999888888888887776666789999
Q ss_pred ecCceeEEEEcCCcEEEEeCCCCCccCCCCCC----CeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 276 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH----DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 276 ~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~----~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
||.+|++||+++|++|+||.|.+||||.++.. ....|.....+ .+..|.++++|..|+++|..+|.||+||
T Consensus 291 cG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~~is~ge~H~l~L~~~G~l~a~G 365 (476)
T COG5184 291 CGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTICSISAGESHSLILRKDGTLYAFG 365 (476)
T ss_pred cCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC--CCceEEEEecCcceEEEEecCceEEEec
Confidence 99999999999999999999999999998221 11233333333 3446899999999999999999999998
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=288.20 Aligned_cols=234 Identities=29% Similarity=0.405 Sum_probs=208.5
Q ss_pred CcEEEEecC--CeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEE
Q 018985 112 GNMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (348)
Q Consensus 112 ~i~~ia~G~--~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG 188 (348)
+|..|++|. .|++++ -+|+.|+||.|..||||+++... ...|+.|+-....+|++.+||++|+++||++|+||+||
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~-~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afG 135 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ-RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFG 135 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchhh-ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEec
Confidence 477888774 799999 99999999999999999996554 67788888777779999999999999999999999999
Q ss_pred CCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC-------------
Q 018985 189 DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD------------- 255 (348)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~------------- 255 (348)
.|.+||||.+.....+..|.++-. .+..|+.|+||..+++.|+..+.+.++|.-.|||||++....
T Consensus 136 eNK~GQlGlgn~~~~v~s~~~~~~-~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 136 ENKYGQLGLGNAKNEVESTPLPCV-VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred ccccccccccccccccccCCCccc-cCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeee
Confidence 999999999998766666655543 345799999999999999999999999999999999987542
Q ss_pred -CCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCce
Q 018985 256 -RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH 334 (348)
Q Consensus 256 -~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~h 334 (348)
.+.|..|..+.+ .+|++++||.+|++|++++++||+||.+.+|+||+....++..|++|..|+..+.--.++.||+..
T Consensus 215 ~~pr~~~i~~~dg-vqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 215 AQPRPKAIASLDG-VQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred cCCCccccccccc-eeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 345666666666 589999999999999999999999999999999999999999999999998887788899999999
Q ss_pred eEEEecCCcEEEeC
Q 018985 335 VVALDSSGYVSLCS 348 (348)
Q Consensus 335 t~al~~~G~v~~wG 348 (348)
+++..+-|.+|.||
T Consensus 294 Sl~v~e~G~Lf~~g 307 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWG 307 (443)
T ss_pred ceeecccceeEEee
Confidence 99999999999998
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7.8e-38 Score=271.00 Aligned_cols=260 Identities=22% Similarity=0.319 Sum_probs=212.1
Q ss_pred cceeeeeecccccceeeecccCCcccccccccccccccccccCCCC--cEEEEecCCeEEEE-ECCeEEEEeCCCCCccc
Q 018985 67 LHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG--NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLG 143 (348)
Q Consensus 67 ~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG 143 (348)
.++.|+ ||+|++|||++. +. +....|+.++.+.+ |++.|||++|+++| ++|+||++|.|.+||||
T Consensus 76 egk~~~-wGRNekGQLGhg-D~----------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlG 143 (443)
T KOG1427|consen 76 EGKCYT-WGRNEKGQLGHG-DM----------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLG 143 (443)
T ss_pred ccceee-cccCccCccCcc-ch----------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccc
Confidence 578999 999999999974 11 12245788887665 99999999999999 99999999999999999
Q ss_pred CCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCC-------------CceeecEEe
Q 018985 144 HGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN-------------RPIFRPRLV 210 (348)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~-------------~~~~~p~~v 210 (348)
.+........++++.+- ...|..|+||..+++.|+..+.+.+.|...|||||++... +..+.|..|
T Consensus 144 lgn~~~~v~s~~~~~~~-~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 144 LGNAKNEVESTPLPCVV-SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred ccccccccccCCCcccc-CccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 99877755555554433 3489999999999999999999999999999999998765 223456677
Q ss_pred cccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCC-CCEEEEEecCceeEEEEcCCc
Q 018985 211 EALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGV 289 (348)
Q Consensus 211 ~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~-~~v~~Ia~G~~~s~~lt~~g~ 289 (348)
..+.+..|++++||.+|++|++++++||+||.+.||.||+....+...|++++.++.. ..-..+.||...++++.+-|.
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~ 302 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQ 302 (443)
T ss_pred ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccce
Confidence 7888999999999999999999999999999999999999999999999988876432 245688899999999999999
Q ss_pred EEEEeCCCC----------------------------------------------CccCCCCC-CCeeeeEEeeccccCC
Q 018985 290 VYSFGSGSN----------------------------------------------FCLGHGEQ-HDELQPRAIQTFRRKG 322 (348)
Q Consensus 290 vy~wG~n~~----------------------------------------------gqLG~~~~-~~~~~P~~v~~~~~~~ 322 (348)
+|.||.+.+ +.||.++. .....|.+++.+ .+
T Consensus 303 Lf~~g~~k~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l--~~ 380 (443)
T KOG1427|consen 303 LFMWGKIKNNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDML--EG 380 (443)
T ss_pred eEEeeccccCcccccCCCchhhcCCccCCCcCccceeeeecccccccccccccccccccCccccccccCccccchh--cc
Confidence 999997543 11111111 233467777766 45
Q ss_pred CcEEEEEecCceeEEEecC
Q 018985 323 IHVVRVSAGDEHVVALDSS 341 (348)
Q Consensus 323 ~~v~~i~~G~~ht~al~~~ 341 (348)
.+|.+|++|+.|+++|.++
T Consensus 381 i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 381 IHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred eeccceeeccceEEEEEcc
Confidence 6899999999999999654
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=5.8e-28 Score=232.66 Aligned_cols=261 Identities=23% Similarity=0.286 Sum_probs=203.4
Q ss_pred ceeeeeecccccceeeecccCCcccccccccccccccccccCCCC----cEEEEecCCeEEEE-ECCeEEEEeCCCCCcc
Q 018985 68 HSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG----NMQITTGRYHTLLI-SNSSVFSCGSSLCGVL 142 (348)
Q Consensus 68 ~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----i~~ia~G~~h~~~l-~~G~vy~wG~n~~gql 142 (348)
..+|. ||.|.+..||...+.+ ...|..|...++ ++||+.+.+|++++ +.|+||++|.+..|+|
T Consensus 142 ndvy~-wG~N~N~tLGign~~~-----------~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRl 209 (1267)
T KOG0783|consen 142 NDVYG-WGTNVNNTLGIGNGKE-----------PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRL 209 (1267)
T ss_pred cceeE-ecccccccccccCCCC-----------CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCcc
Confidence 46999 9999999998744331 123444443332 88999999999999 9999999999999999
Q ss_pred cCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEeccc--CCC-cee
Q 018985 143 GHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGV-PCK 219 (348)
Q Consensus 143 G~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~-~i~ 219 (348)
|.+++.. ...|++|+.....+|.+|+....|+++||++|.||+||.|.++|||..+.......|.+|... .+. .|+
T Consensus 210 G~gdeq~-~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iI 288 (1267)
T KOG0783|consen 210 GFGDEQY-NFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQII 288 (1267)
T ss_pred CcCcccc-cccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhh
Confidence 9997665 677888887777799999999999999999999999999999999999887667777777543 333 689
Q ss_pred EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC-CCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCC
Q 018985 220 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 298 (348)
Q Consensus 220 ~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~-~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~ 298 (348)
.|++|..|++|.++. .||+||.|. ||||..+... +..|+.+.... ..|..|+|....+++++.++.+|++-+-..
T Consensus 289 gvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~--~~v~~v~a~~~ATVc~~~~~~i~~~ady~~ 364 (1267)
T KOG0783|consen 289 GVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLL--SPVIHVVATTRATVCLLQNNSIIAFADYNQ 364 (1267)
T ss_pred hhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcccc--cceEEEEecCccEEEEecCCcEEEEecccc
Confidence 999999999999954 799999987 9999877643 56787664443 489999999999999999999999875333
Q ss_pred CccCCCCCCCeeeeEEeecc--ccCCCcEEEEEecCceeEEEecCCcEEEe
Q 018985 299 FCLGHGEQHDELQPRAIQTF--RRKGIHVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 299 gqLG~~~~~~~~~P~~v~~~--~~~~~~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
..+- .......-..|..- ......+.+..+...-.++||+-|+||.|
T Consensus 365 ~k~~--~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w 413 (1267)
T KOG0783|consen 365 VKLP--FNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEW 413 (1267)
T ss_pred eecC--cchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEE
Confidence 2222 21111222233221 11223577788888889999999999999
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=8.2e-27 Score=224.77 Aligned_cols=214 Identities=26% Similarity=0.324 Sum_probs=181.3
Q ss_pred ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCC--cEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCce
Q 018985 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 204 (348)
Q Consensus 127 ~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~--~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 204 (348)
....||+||.|.+.-||++.... ...|..+.+.... -+.+|+.+..|++++++.|+||++|-+.-|.||+++.. ..
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq-~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ-YN 217 (1267)
T ss_pred CccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc-cc
Confidence 66899999999999999988776 4567777765433 57789999999999999999999999999999999654 58
Q ss_pred eecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC-CCCCceEecCC--CCCCCEEEEEecCcee
Q 018985 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL-DRPTPKSIAPL--EEVGSVVQIAAGPSYM 281 (348)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~-~~~~p~~v~~~--~~~~~v~~Ia~G~~~s 281 (348)
+.|++|+.|.+.+|.+|+....|+++||++|.||+||.|..+|||..+.. ....|.+|... ++...|+.|+||..|+
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 89999999999999999999999999999999999999999999987654 34566666532 2324799999999999
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCC-CCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEe
Q 018985 282 LAVTGNGVVYSFGSGSNFCLGHGEQ-HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 282 ~~lt~~g~vy~wG~n~~gqLG~~~~-~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
+|.|+. .||+||.| +||||..+. ..+..|+.+-. ....|..|+|...-|++++.++.+|++
T Consensus 298 Vawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ 359 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAF 359 (1267)
T ss_pred eeeecc-eEEEeccc-CceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEE
Confidence 999977 69999997 599998765 34457876533 355799999999999999999999875
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-22 Score=202.58 Aligned_cols=244 Identities=21% Similarity=0.304 Sum_probs=177.5
Q ss_pred hccceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEE---ECCeEEEEeCCCC-C
Q 018985 65 CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI---SNSSVFSCGSSLC-G 140 (348)
Q Consensus 65 ~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l---~~G~vy~wG~n~~-g 140 (348)
..++++|- -|...+-.|+. .+++|-.+. ...+|++|+.|-+...++ .+|-++.-|.... |
T Consensus 495 a~sGKvYY-aGn~t~~Gl~e-~G~nWmEL~--------------l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~ 558 (3738)
T KOG1428|consen 495 ARSGKVYY-AGNGTRFGLFE-TGNNWMELC--------------LPEPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNG 558 (3738)
T ss_pred hcCccEEE-ecCccEEeEEc-cCCceEEec--------------CCCceEEEEeccchhheeeccCcceEEeccCccccc
Confidence 44677776 45444444443 445665432 235699999998766665 8888888775421 1
Q ss_pred cccCCCCCceeeceEEeecCC-CCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCcee
Q 018985 141 VLGHGPETTQCVSFTRINFPS-AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK 219 (348)
Q Consensus 141 qlG~~~~~~~~~~~~~v~~~~-~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~ 219 (348)
.+ +...|. ..+|+.+.+...---+++++|++|..|.... ........+..+.+.-|.
T Consensus 559 ~~-------------Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm---------~~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 559 RL-------------RRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM---------RVNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred ch-------------hhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE---------EecchHHHhhccccceee
Confidence 11 111122 2378887655544567899999999986431 001223455677888899
Q ss_pred EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC---------------------------------------------
Q 018985 220 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL--------------------------------------------- 254 (348)
Q Consensus 220 ~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~--------------------------------------------- 254 (348)
+++.|..|.++++.+|+||+||.|+.+|+|.-...
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 99999999999999999999999999999942110
Q ss_pred ------------------------------------------------------CCCCceEecCCC--CCCCEEEEEecC
Q 018985 255 ------------------------------------------------------DRPTPKSIAPLE--EVGSVVQIAAGP 278 (348)
Q Consensus 255 ------------------------------------------------------~~~~p~~v~~~~--~~~~v~~Ia~G~ 278 (348)
....|.+|..-. ...++.+|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 001122222111 123799999999
Q ss_pred ceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 279 SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 279 ~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
.|+++|.+|++||++|+|.+||||.|++.....|++|..+ .+..+++|++|.+||+++..||.||++|
T Consensus 777 ~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~--~~t~~vQVaAGSNHT~l~~~DGsVFTFG 844 (3738)
T KOG1428|consen 777 FHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILP--SDTVIVQVAAGSNHTILRANDGSVFTFG 844 (3738)
T ss_pred ceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcC--CCCceEEEecCCCceEEEecCCcEEEec
Confidence 9999999999999999999999999999999999999987 4668999999999999999999999997
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=8.4e-23 Score=204.13 Aligned_cols=221 Identities=24% Similarity=0.336 Sum_probs=164.0
Q ss_pred cccCC-CCcEEEEecCCeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCC
Q 018985 106 IVETS-AGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG 182 (348)
Q Consensus 106 ~~~~~-~~i~~ia~G~~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G 182 (348)
.+|.. ++|+.+ |++.|..-+ +||++|+.|.... ........+.-....-|.+++.|..|.++++++|
T Consensus 563 ~~P~n~rKIv~v-~~s~~VY~~vSenGkifM~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG 632 (3738)
T KOG1428|consen 563 LVPSNRRKIVHV-CASGHVYGYVSENGKIFMGGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNG 632 (3738)
T ss_pred cCCCCcceeEEE-eeeeEEEEEEccCCeEEeecceeE---------EecchHHHhhccccceeehhhccccceeEEEeCC
Confidence 34443 346665 566677655 9999999886321 0001111222233447899999999999999999
Q ss_pred cEEEEECCCCCcccCCCCC-------------------------------------------------------------
Q 018985 183 QVFTCGDNSSFCCGHRDTN------------------------------------------------------------- 201 (348)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~------------------------------------------------------------- 201 (348)
+||+||.|+.+|+|.-...
T Consensus 633 ~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~G 712 (3738)
T KOG1428|consen 633 HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVG 712 (3738)
T ss_pred eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCC
Confidence 9999999999999963211
Q ss_pred -------------------------------------CceeecEEecc---cCCCceeEEEecCCeEEEEEcCCcEEEEe
Q 018985 202 -------------------------------------RPIFRPRLVEA---LKGVPCKQVTAGLNFTGFLTIRGHVHTCG 241 (348)
Q Consensus 202 -------------------------------------~~~~~p~~v~~---~~~~~i~~i~~G~~hs~~lt~~G~v~~wG 241 (348)
+....|.+|.. ..+.++.+|+||.+|+++|.+|++||+||
T Consensus 713 ES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG 792 (3738)
T KOG1428|consen 713 ESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFG 792 (3738)
T ss_pred cccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEec
Confidence 11122333321 22458999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCC---CeeeeEEeecc
Q 018985 242 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH---DELQPRAIQTF 318 (348)
Q Consensus 242 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~---~~~~P~~v~~~ 318 (348)
.|.+||||.|+..+...|++|..+.+ ..+++|++|.+|++++..||.||++|.-..|||+.+--+ --..|.+++.+
T Consensus 793 ~~~HGQLG~GDt~Sk~~Pq~V~~~~~-t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 793 SNCHGQLGVGDTLSKNTPQQVILPSD-TVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred CCcccccCcCccccCCCcceEEcCCC-CceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCC
Confidence 99999999999999999999998877 589999999999999999999999999999999975432 22378888776
Q ss_pred ccC-CCcEEEEEecCceeEE
Q 018985 319 RRK-GIHVVRVSAGDEHVVA 337 (348)
Q Consensus 319 ~~~-~~~v~~i~~G~~ht~a 337 (348)
... +.+...|.+.++.+++
T Consensus 872 G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 872 GPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred CccccccceeeccCCCccee
Confidence 321 3356677776665543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.38 E-value=9.9e-13 Score=87.74 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=46.3
Q ss_pred CCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEE
Q 018985 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231 (348)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~l 231 (348)
||+||+||.|.+||||..........|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999955555569999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.35 E-value=2e-12 Score=86.22 Aligned_cols=51 Identities=29% Similarity=0.481 Sum_probs=45.1
Q ss_pred CCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEE
Q 018985 128 NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFV 178 (348)
Q Consensus 128 ~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~l 178 (348)
||+||+||.|.+||||..........|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 799999999999999954545557889999998888999999999999987
No 11
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.1e-14 Score=136.71 Aligned_cols=174 Identities=29% Similarity=0.355 Sum_probs=135.6
Q ss_pred CCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEc-------C
Q 018985 162 AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI-------R 234 (348)
Q Consensus 162 ~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~-------~ 234 (348)
..+|.+++||.+|+++++..|+++.||.|.+||+|.+....... |.+++.+.+.+..+|++|..|+++++. +
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e 91 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE 91 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchh
Confidence 34899999999999999999999999999999999984444344 999999999999999999999888876 9
Q ss_pred CcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEE-cCCcEEEEeCCCCC--ccCCCCCCCeee
Q 018985 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT-GNGVVYSFGSGSNF--CLGHGEQHDELQ 311 (348)
Q Consensus 235 G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt-~~g~vy~wG~n~~g--qLG~~~~~~~~~ 311 (348)
|.++++|....||+|++...+...|..+..+-+ ..++.|+||..|++++- .-|++|..|.+..| ++- ....
T Consensus 92 ~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~-~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~-----s~s~ 165 (850)
T KOG0941|consen 92 GKVFSFGAGSTGQLGHSLTENEVLPLLVLELIG-SRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIV-----SLSG 165 (850)
T ss_pred ccccccCCcccccccccccccccccHHHHHHHh-hhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceee-----ccch
Confidence 999999999999999987788888888776655 58999999999998864 57899999988776 111 1111
Q ss_pred eEEeeccc-cCCCcEEEEEecCceeEEEecCC
Q 018985 312 PRAIQTFR-RKGIHVVRVSAGDEHVVALDSSG 342 (348)
Q Consensus 312 P~~v~~~~-~~~~~v~~i~~G~~ht~al~~~G 342 (348)
+....... .....+..+.+|++.+..+...+
T Consensus 166 ~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 166 EDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred hhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 10011100 01224556778888888876554
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.23 E-value=1.5e-11 Score=71.87 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.1
Q ss_pred EEEEEecCCeeEEEEcCCcEEEEECCCCCc
Q 018985 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFC 194 (348)
Q Consensus 165 i~~ia~G~~h~~~lt~~G~vy~wG~n~~gq 194 (348)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.22 E-value=2.1e-11 Score=71.33 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=26.1
Q ss_pred eeEEEecCCeEEEEEcCCcEEEEeCCCCCC
Q 018985 218 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQ 247 (348)
Q Consensus 218 i~~i~~G~~hs~~lt~~G~v~~wG~n~~gq 247 (348)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-12 Score=128.62 Aligned_cols=172 Identities=21% Similarity=0.244 Sum_probs=131.2
Q ss_pred CcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEc-------CCc
Q 018985 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ-------SGQ 183 (348)
Q Consensus 112 ~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~-------~G~ 183 (348)
.|.|++||.+|++++ ..|++|+||.|.+||+|++....+.. |.+++........+|++|.+|+++++. +|.
T Consensus 15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 599999999999999 99999999999999999995544444 888887777889999999998888766 999
Q ss_pred EEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEc-CCcEEEEeCCCCCCcCCCCCCCCCCceEe
Q 018985 184 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI-RGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (348)
Q Consensus 184 vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~-~G~v~~wG~n~~gqLG~~~~~~~~~p~~v 262 (348)
++++|....||+|+....+ ...|..+..+-+..+.+|+||..|+++.-. -|++|.+|.+..|. +.-.....+...
T Consensus 94 ~fs~Ga~~~~q~~h~~~~~-~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~i~s~s~~~~l 169 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGHSLTEN-EVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GVIVSLSGEDLL 169 (850)
T ss_pred ccccCCccccccccccccc-ccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---ceeeccchhhhc
Confidence 9999999999999955543 667777777778889999999999888754 68999999988771 000011111011
Q ss_pred cCCC--CCCCEEEEEecCceeEEEEcCC
Q 018985 263 APLE--EVGSVVQIAAGPSYMLAVTGNG 288 (348)
Q Consensus 263 ~~~~--~~~~v~~Ia~G~~~s~~lt~~g 288 (348)
.... ....+..+++|.+.+..+...+
T Consensus 170 ~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 170 RDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred ccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 1110 0013556788888888887665
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=95.86 E-value=0.0054 Score=39.55 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=28.2
Q ss_pred cccCChHHHHHHHhhCCCCchhhhhhccccccccC
Q 018985 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (348)
Q Consensus 10 ~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~~ 44 (348)
|..||.+++.+|| .+|+..|+..+..+|+.+..
T Consensus 1 i~~LP~Eil~~If--~~L~~~dl~~~~~vcr~w~~ 33 (47)
T PF12937_consen 1 ISSLPDEILLEIF--SYLDPRDLLRLSLVCRRWRR 33 (47)
T ss_dssp CCCS-HHHHHHHH--TTS-HHHHHHHTTSSHHHHH
T ss_pred ChHhHHHHHHHHH--hcCCHHHHHHHHHHHHHHHH
Confidence 4689999999999 89999999999999998863
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.51 E-value=0.41 Score=46.74 Aligned_cols=115 Identities=18% Similarity=0.113 Sum_probs=70.6
Q ss_pred hhHHHHHhcc--ceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecC-CeEEEE-ECCeEE-
Q 018985 58 DLAASQLCAL--HSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR-YHTLLI-SNSSVF- 132 (348)
Q Consensus 58 ~~~~~~~~~~--~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~-~h~~~l-~~G~vy- 132 (348)
+.+...+|.. +.+.. |....+|.++.+.+-.-.......- ..+.....+.+|++|. .-..++ .+|.||
T Consensus 179 e~aigg~cv~~~g~~~a-wAI~s~Gd~y~RtGvs~~~P~GraW------~~i~~~t~L~qISagPtg~VwAvt~nG~vf~ 251 (705)
T KOG3669|consen 179 EAAIGGVCVAGLGDDTA-WAIRSSGDLYLRTGVSVDRPCGRAW------KVICPYTDLSQISAGPTGVVWAVTENGAVFY 251 (705)
T ss_pred hhccCcccccCCCceEE-EEEecCCcEEEeccccCCCCCCcee------eecCCCCccceEeecCcceEEEEeeCCcEEE
Confidence 3444455653 34444 8899999999754432111111100 1111222588999999 556678 999976
Q ss_pred EEeCCCCCcccCCCCCceeeceEEeecCCCC-cEEEEEecCCeeEEEEcCCcEEEE
Q 018985 133 SCGSSLCGVLGHGPETTQCVSFTRINFPSAA-HVVQVSASENHAAFVLQSGQVFTC 187 (348)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~-~i~~ia~G~~h~~~lt~~G~vy~w 187 (348)
--|-..+.+.|..-. .|..|... .++.|+.|....-+||.+|+||.=
T Consensus 252 R~GVsRqNp~GdsWk--------dI~tP~~a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 252 REGVSRQNPEGDSWK--------DIVTPRQALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred EecccccCCCCchhh--------hccCcccccceEEEEeccceEEEEecCCcEEEE
Confidence 456656666554332 22223333 499999999999999999999873
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.14 E-value=1.3 Score=43.43 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=55.3
Q ss_pred cEEEEEecC-CeeEEEEcCCcEEE-EECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEE
Q 018985 164 HVVQVSASE-NHAAFVLQSGQVFT-CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (348)
Q Consensus 164 ~i~~ia~G~-~h~~~lt~~G~vy~-wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~w 240 (348)
.+.+|++|. .-..+|+++|.|+. -|-..+.+.|..-. .+.+|+... .++.|+.|....-+|+.+|++|.=
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk--dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK--DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh--hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 788999999 78889999999865 67777777775443 355555443 289999999999999999999964
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.71 E-value=4.7 Score=35.69 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=39.4
Q ss_pred ecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCcee--EEEEcCCcEEEEeCCC
Q 018985 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYM--LAVTGNGVVYSFGSGS 297 (348)
Q Consensus 223 ~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s--~~lt~~g~vy~wG~n~ 297 (348)
-...+-+.-+.+|+|++|-..+. .......| ... ..|.+++...+-+ +|.++.|++|+|-.-.
T Consensus 134 pnQteLis~dqsg~irvWDl~~~------~c~~~liP----e~~--~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGEN------SCTHELIP----EDD--TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCcceEEeecCCCcEEEEEccCC------ccccccCC----CCC--cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 34456666678999999975431 11222222 221 3577777765554 6788999999998643
No 19
>PHA03098 kelch-like protein; Provisional
Probab=90.04 E-value=10 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=17.3
Q ss_pred ccccCChHHHHHHHhhCCCCch
Q 018985 9 SIEELPSHLIFEILTSGRLSAV 30 (348)
Q Consensus 9 ~~~~lP~~~~~~i~~~~~l~~~ 30 (348)
.+.+||.+.+..|+.+..|...
T Consensus 145 ~f~~l~~~~l~~ll~~~~L~v~ 166 (534)
T PHA03098 145 DFIYLSKNELIKILSDDKLNVS 166 (534)
T ss_pred hhhcCCHHHHHHHhcCCCcCcC
Confidence 4578899999999988887653
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=89.52 E-value=0.12 Score=33.04 Aligned_cols=32 Identities=38% Similarity=0.611 Sum_probs=26.6
Q ss_pred cccCChHHHHHHHhhCCCCchhhhhhcccccccc
Q 018985 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFG 43 (348)
Q Consensus 10 ~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~ 43 (348)
+.+||.+++.+|+ ..|+..|+..+..+|+.+.
T Consensus 3 ~~~LP~~il~~Il--~~l~~~~~~~l~~vsk~~~ 34 (48)
T PF00646_consen 3 LSDLPDEILQEIL--SYLDPKDLLRLSLVSKRWR 34 (48)
T ss_dssp HHHS-HHHHHHHH--HTS-HHHHHHHCTT-HHHH
T ss_pred HHHCCHHHHHHHH--HHCcHHHHHHHHHHhhHHH
Confidence 5689999999999 9999999999999998875
No 21
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.47 E-value=1.8 Score=47.75 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=67.4
Q ss_pred cccCCCceeEEEe-cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCcee-EEEEcCC
Q 018985 211 EALKGVPCKQVTA-GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYM-LAVTGNG 288 (348)
Q Consensus 211 ~~~~~~~i~~i~~-G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s-~~lt~~g 288 (348)
..+++..|+.++. +.++.++|++.|++-+.= .-| .+.|..-+.+. ..|++++.=..|. +|+|.+|
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g---------~p~~l~~~gl~--G~ik~l~lD~~~nL~Alt~~G 764 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG---------RPVPLSRPGLS--GEIKDLALDEKQNLYALTSTG 764 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCcccccc--CCC---------CCccCCCCCCC--cchhheeeccccceeEecCCC
Confidence 3445455555554 667788888887765542 111 12222233443 3799999988866 6899999
Q ss_pred cEEE-----EeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCC
Q 018985 289 VVYS-----FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342 (348)
Q Consensus 289 ~vy~-----wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G 342 (348)
++|. |-.+..+- .....+.|..++. +.+|..+....+|.+.+.-++
T Consensus 765 ~Lf~~~k~~WQ~~~~~~----~~~~~W~~v~lP~----~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 765 ELFRLPKEAWQGNAEGD----QMAAKWQKVALPD----EQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeecCHHHhhCcccCC----ccccCceeccCCC----CCchhhhhcCCCCceEEEecC
Confidence 9996 44333220 1123455554442 447888998888888887544
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=0.022 Score=59.56 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=82.4
Q ss_pred CcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCc-eeeceEEeec-CCCCcEEEEEecCCeeEEEEcCCcEEEEE
Q 018985 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT-QCVSFTRINF-PSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (348)
Q Consensus 112 ~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~-~~~~~~~v~~-~~~~~i~~ia~G~~h~~~lt~~G~vy~wG 188 (348)
+++.|.+-.+-.++| .+|++|.|-+...--|-..-... ....|....+ ....+|+.+++..--.-++|++|+|-+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 477777777888999 99999999987654333211111 0111211111 23458999999998889999999999995
Q ss_pred CCCCCcccCCCCCCceee-cEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCC
Q 018985 189 DNSSFCCGHRDTNRPIFR-PRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~-p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~ 244 (348)
+.. |.+........ -+.+ ...+..+++-.|...|.+|..+|.-+|-||.--
T Consensus 455 DEc----gagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 455 DEC----GAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hhh----hhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 432 22221111111 1122 235667888888899999999999999999543
No 23
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.50 E-value=15 Score=40.97 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=38.0
Q ss_pred CEEEEEe-cCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCce-eEEEecCCcEEE
Q 018985 270 SVVQIAA-GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH-VVALDSSGYVSL 346 (348)
Q Consensus 270 ~v~~Ia~-G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~h-t~al~~~G~v~~ 346 (348)
.|+.+|. +.++.+++++.|++-+.- ....|+.++.....+ .|+.|+.-..| -+|++.+|++|.
T Consensus 704 ~i~a~Avv~~~~fvald~qg~lt~h~-------------k~g~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 704 VITAFAVVNDNKFVALDDQGDLTAHQ-------------KPGRPVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred cceeEEEEcCCceEEeccCCcccccc-------------CCCCCccCCCCCCCc-chhheeeccccceeEecCCCceee
Confidence 4454443 456666666666554321 111255555433323 69999998875 478899999996
No 24
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=85.67 E-value=0.37 Score=29.33 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=27.3
Q ss_pred CChHHHHHHHhhCCCCchhhhhhccccccccC
Q 018985 13 LPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (348)
Q Consensus 13 lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~~ 44 (348)
||.+++.+|+ .+++..|+..+..+|+.|..
T Consensus 1 lP~~ll~~I~--~~l~~~d~~~~~~vc~~~~~ 30 (41)
T smart00256 1 LPDEILEEIL--SKLPPKDLLRLRKVSRRWRS 30 (41)
T ss_pred CCHHHHHHHH--HcCCHHHHHHHHHHHHHHHH
Confidence 7999999999 89999999999999998763
No 25
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.47 E-value=6.5 Score=34.37 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=26.1
Q ss_pred CCceeEEEecCCeEEEEEcCCcEEEEeCCC
Q 018985 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 215 ~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~ 244 (348)
+.++..+.|-.++-++||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 457888999999999999999999997544
No 26
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.82 E-value=0.058 Score=56.55 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=83.2
Q ss_pred CCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCC--CCCCCCCceEec-CCCCCCCEEEEEecCceeEEEEcCCcE
Q 018985 214 KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG--DTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVV 290 (348)
Q Consensus 214 ~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~--~~~~~~~p~~v~-~~~~~~~v~~Ia~G~~~s~~lt~~g~v 290 (348)
.+.+++.|.+-++..+||..+|++|.|-+.+.--|-.. -..+...|.--. .+.+ .+|+.+++..--.-++|++|+|
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hg-e~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHG-EKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccC-CeeEEeecCceeeeeeecCCch
Confidence 34578899998999999999999999998876544331 112222332211 2223 5899999999999999999999
Q ss_pred EEEeCCCCCccCCCC--CCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 291 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 291 y~wG~n~~gqLG~~~--~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
-+|=.- +|.+- ......-+++. ..+..+++.-|-..|++|..+|.-+|.||
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tkie---ed~~maVqd~~~adhlaAf~~dniihWcG 503 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKIE---EDGEMAVQDHCCADHLAAFLEDNIIHWCG 503 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHhhhceeeEEe
Confidence 999532 11110 00001112222 13445666667778888988999999998
No 27
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.63 E-value=6.2 Score=34.51 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.4
Q ss_pred CCEEEEEecCceeEEEEcCCcEEEEeCCC
Q 018985 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 269 ~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~ 297 (348)
.++..+.|-..+-++||++|.+|+|=-..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 47888999999999999999999997544
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=83.36 E-value=33 Score=30.59 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=34.4
Q ss_pred CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCce--eEEEecCCcEEEe
Q 018985 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--VVALDSSGYVSLC 347 (348)
Q Consensus 278 ~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~h--t~al~~~G~v~~w 347 (348)
..+-+.-+.+|.|++|-...+ ....+..|.. +..|.++....+- .++.++.|+.|+|
T Consensus 136 QteLis~dqsg~irvWDl~~~------~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGEN------SCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred cceEEeecCCCcEEEEEccCC------ccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEE
Confidence 344566678999999975332 1122223322 2246666665544 4566789999999
No 29
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=83.00 E-value=46 Score=32.08 Aligned_cols=206 Identities=8% Similarity=0.047 Sum_probs=94.3
Q ss_pred CCcEEEEecCCeEEEE---ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEE--EcCCcEE
Q 018985 111 AGNMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFV--LQSGQVF 185 (348)
Q Consensus 111 ~~i~~ia~G~~h~~~l---~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~l--t~~G~vy 185 (348)
..+..+++-..-.+++ ..|++|.|--++.-.|-.-.. .-..|..+....+-++++ .+||.|.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-------------HYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-------------HYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-------------hccceeEEEEeCCCcEEEecCCCccEE
Confidence 3466676665444333 789999998764322211100 011455555555555555 4789999
Q ss_pred EEECCCCCcccCCCCCCceeecEEeccc--CCCceeEEEecCCe--EEEE--EcCCcEEEEeCCCCCCcCCCCCCCCCCc
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGVPCKQVTAGLNF--TGFL--TIRGHVHTCGSNTHGQLGHGDTLDRPTP 259 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~h--s~~l--t~~G~v~~wG~n~~gqLG~~~~~~~~~p 259 (348)
+|=.-.- -+... ...|.++..+ ....|+++.+|..- +.++ ++|..+-+|-... |. .-
T Consensus 149 vW~l~~l-----v~a~~-~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~----------LL 211 (476)
T KOG0646|consen 149 VWLLTDL-----VSADN-DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GV----------LL 211 (476)
T ss_pred EEEEEee-----ccccc-CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ce----------ee
Confidence 9964331 11111 1133333333 33468888777652 1111 2344444443221 10 00
Q ss_pred eEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCC-CCc-cCCCCCCCeeeeEEeeccc-cC-CCcEEEEEecCcee
Q 018985 260 KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS-NFC-LGHGEQHDELQPRAIQTFR-RK-GIHVVRVSAGDEHV 335 (348)
Q Consensus 260 ~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~-~gq-LG~~~~~~~~~P~~v~~~~-~~-~~~v~~i~~G~~ht 335 (348)
..+..+.. .+-+-+.-+..+.++=+++|++|..=... .|| -|.........-+++..+. .. ...|..++-..+-+
T Consensus 212 lti~fp~s-i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTITFPSS-IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEecCCc-ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 11111110 12223334556666667888887643221 111 0111011111112222221 11 13577666666666
Q ss_pred EEEe--cCCcEEEe
Q 018985 336 VALD--SSGYVSLC 347 (348)
Q Consensus 336 ~al~--~~G~v~~w 347 (348)
+.+. +||+|-.|
T Consensus 291 lLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVW 304 (476)
T ss_pred EEEeeCCCCCEEEE
Confidence 6664 78888888
No 30
>PHA02713 hypothetical protein; Provisional
Probab=82.21 E-value=36 Score=34.33 Aligned_cols=18 Identities=11% Similarity=0.449 Sum_probs=13.0
Q ss_pred ccccCChHHHHHHHhhCC
Q 018985 9 SIEELPSHLIFEILTSGR 26 (348)
Q Consensus 9 ~~~~lP~~~~~~i~~~~~ 26 (348)
++.+||.+.+..++++..
T Consensus 163 ef~~L~~~~l~~lL~~d~ 180 (557)
T PHA02713 163 AFKKTVFEILFDIISTND 180 (557)
T ss_pred hhhhCCHHHHHHHhcccc
Confidence 346788888888886644
No 31
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=78.55 E-value=3.8 Score=24.17 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred CcEEEEEecC-CeeEEEEcCCcEEEE
Q 018985 163 AHVVQVSASE-NHAAFVLQSGQVFTC 187 (348)
Q Consensus 163 ~~i~~ia~G~-~h~~~lt~~G~vy~w 187 (348)
..+++|++|. +...+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 899999999999863
No 32
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=77.21 E-value=48 Score=31.49 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=27.0
Q ss_pred cccCChHHHHHHHhhCCC-CchhhhhhccccccccCC
Q 018985 10 IEELPSHLIFEILTSGRL-SAVDLAHLELTSKTFGGS 45 (348)
Q Consensus 10 ~~~lP~~~~~~i~~~~~l-~~~~l~~l~~t~~~~~~~ 45 (348)
+.+||+|++..|. +.| ...|+....+.|+..+.+
T Consensus 4 Ws~Lp~dll~~i~--~~l~~~~d~~~~~~vC~sWr~a 38 (373)
T PLN03215 4 WSTLPEELLHMIA--GRLFSNVELKRFRSICRSWRSS 38 (373)
T ss_pred hhhCCHHHHHHHH--hhCCcHHHHHHHHhhhhhHHHh
Confidence 4689999999999 888 777888888877765543
No 33
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.07 E-value=25 Score=35.55 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=31.0
Q ss_pred EEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeC
Q 018985 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 295 (348)
Q Consensus 230 ~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~ 295 (348)
+..-++.||+.|-.+. +... .......|..-.. ..+........+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~-~~VE~ydp~~~~W----~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL-SSVERYDPETNQW----TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc-ceEEEEcCCCCce----eEcccCccccccccEEEECCEEEEEec
Confidence 3444889999995442 1100 1111122221111 122334446666666777889999985
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.33 E-value=66 Score=32.54 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=12.0
Q ss_pred eEEEEECCeEEEEeCCC
Q 018985 122 HTLLISNSSVFSCGSSL 138 (348)
Q Consensus 122 h~~~l~~G~vy~wG~n~ 138 (348)
|++++-+|.||+.|--.
T Consensus 326 ~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccEEEECCEEEEEcccc
Confidence 44444888999999544
No 35
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=71.60 E-value=8.1 Score=22.70 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=21.7
Q ss_pred CCEEEEEecC-ceeEEEEcCCcEEEE
Q 018985 269 GSVVQIAAGP-SYMLAVTGNGVVYSF 293 (348)
Q Consensus 269 ~~v~~Ia~G~-~~s~~lt~~g~vy~w 293 (348)
..+++|++|. +...+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 888999999999863
No 36
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=68.66 E-value=1.6e+02 Score=32.37 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=69.3
Q ss_pred cEEEEEecCCe-eEEEE--cCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEE-ecCCeEEEE-EcCCcEE
Q 018985 164 HVVQVSASENH-AAFVL--QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT-AGLNFTGFL-TIRGHVH 238 (348)
Q Consensus 164 ~i~~ia~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~hs~~l-t~~G~v~ 238 (348)
.+.+++....| +++++ .||.|-.|-.-. -.|.+.. ..-...-.+.+.++.++. |+..+.+|+ ++||.|-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s----~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGS----ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehh--hhcCcce----eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 45678888888 77775 789999997543 2232211 111122223455666654 455555555 6789998
Q ss_pred EEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCc----e-eEEEEcCCcEEEEeCCC
Q 018985 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS----Y-MLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 239 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~----~-s~~lt~~g~vy~wG~n~ 297 (348)
..+-+.+.+ ......-.+++.+.....+++..+-.. | .++.|..+.+..|+...
T Consensus 1124 ~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1124 VLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 888765411 111122233444433345666554322 2 35578888899998643
No 37
>PLN02153 epithiospecifier protein
Probab=68.38 E-value=1e+02 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=13.3
Q ss_pred CeEEEEECCeEEEEeCCC
Q 018985 121 YHTLLISNSSVFSCGSSL 138 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n~ 138 (348)
.|++++.++++|.+|--.
T Consensus 130 ~~~~~~~~~~iyv~GG~~ 147 (341)
T PLN02153 130 FHSMASDENHVYVFGGVS 147 (341)
T ss_pred eeEEEEECCEEEEECCcc
Confidence 566655888999998643
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=67.80 E-value=1.6e+02 Score=30.61 Aligned_cols=123 Identities=10% Similarity=-0.019 Sum_probs=62.8
Q ss_pred CcEEEEEecCC--eeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEE--EEcCCcEE
Q 018985 163 AHVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGF--LTIRGHVH 238 (348)
Q Consensus 163 ~~i~~ia~G~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~--lt~~G~v~ 238 (348)
.-|-+++.+.+ .++++...|.-.+.|...-|||..-+.....+.-++--.+. ++..++-...-.++ =.+||+|-
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEE
Confidence 34555555543 35556667888889988888888654432122211111111 23333333332222 23567777
Q ss_pred EEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCC
Q 018985 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 298 (348)
Q Consensus 239 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~ 298 (348)
+|-.... .-.+-...........++..-.+..+-..-||.|-+|-...+
T Consensus 376 vWn~~Sg-----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 376 VWNTQSG-----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EEeccCc-----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 7753321 001111111111234555566666666778999999987554
No 39
>PHA02713 hypothetical protein; Provisional
Probab=66.38 E-value=81 Score=31.78 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=11.7
Q ss_pred eEEEEECCeEEEEeCC
Q 018985 122 HTLLISNSSVFSCGSS 137 (348)
Q Consensus 122 h~~~l~~G~vy~wG~n 137 (348)
|.++.-+|+||.+|-.
T Consensus 345 ~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQ 360 (557)
T ss_pred eeEEEECCEEEEECCc
Confidence 3333389999999974
No 40
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=65.60 E-value=54 Score=29.17 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=21.9
Q ss_pred CCEEEEEecCceeEEEEcCCcEEEEeCCCCCc
Q 018985 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300 (348)
Q Consensus 269 ~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gq 300 (348)
..|-+++.-++|-+.- -||.||.|=+|..-.
T Consensus 63 gpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEE 93 (325)
T ss_pred CCeeeeeeehhheeec-cCceEEEeeehhhhh
Confidence 3677777766665444 459999999987654
No 41
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=65.29 E-value=1.3e+02 Score=28.89 Aligned_cols=69 Identities=9% Similarity=0.085 Sum_probs=37.8
Q ss_pred CcEEEEec-CCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCC--CCcEEEEEecCCeeEEEEcCCcEEEE
Q 018985 112 GNMQITTG-RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS--AAHVVQVSASENHAAFVLQSGQVFTC 187 (348)
Q Consensus 112 ~i~~ia~G-~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~--~~~i~~ia~G~~h~~~lt~~G~vy~w 187 (348)
+|+.+.=- ..+.++| ++|.++..- .+|.. . ...+..+.... ..+|-.+..+.+-.++||.++++|.-
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-~------fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-Q------FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-e------echhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 46655543 3466667 999988763 33332 0 00111111100 11344456666778899999999997
Q ss_pred EC
Q 018985 188 GD 189 (348)
Q Consensus 188 G~ 189 (348)
=+
T Consensus 153 ~n 154 (410)
T PF04841_consen 153 NN 154 (410)
T ss_pred eC
Confidence 33
No 42
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=64.14 E-value=2e+02 Score=30.51 Aligned_cols=161 Identities=11% Similarity=0.091 Sum_probs=79.1
Q ss_pred ecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec-----CCeEEEEEcCCcEEEEeCCC
Q 018985 170 ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 170 ~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~hs~~lt~~G~v~~wG~n~ 244 (348)
...++.+++|+.|++|..-...-...+...... .....+....+.+|+.+.+- ....+++|++|.+--.=.++
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~--~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK--PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc--CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 344568888999999998544433322211111 11111222345667766652 23577888888766554333
Q ss_pred CCCcCCCCCCCCCCceEecCCCCCCCEEEEEe--cCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCC
Q 018985 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (348)
Q Consensus 245 ~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~--G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~ 322 (348)
+-.... .-...-.+.+...++.+.. ..++.+++|++|++|..=...--..|.... ...+..+. .+
T Consensus 622 ~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~-~~ 688 (800)
T TIGR01063 622 FSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLK-NE 688 (800)
T ss_pred hhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCC-CC
Confidence 211000 0011111111134544433 345689999999999885543323332211 11111222 23
Q ss_pred CcEEEEEec--CceeEEEecCCcEE
Q 018985 323 IHVVRVSAG--DEHVVALDSSGYVS 345 (348)
Q Consensus 323 ~~v~~i~~G--~~ht~al~~~G~v~ 345 (348)
.+|+.+.+- ..+.+++|++|.+.
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~K 713 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGK 713 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEE
Confidence 356665542 33566777777553
No 43
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=63.70 E-value=1.8e+02 Score=31.51 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.2
Q ss_pred CcEEEEEecCCe--eEEEEcCCcEEEEECC
Q 018985 163 AHVVQVSASENH--AAFVLQSGQVFTCGDN 190 (348)
Q Consensus 163 ~~i~~ia~G~~h--~~~lt~~G~vy~wG~n 190 (348)
..|.+|+....+ .++++.+|+|+.|-..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 489999999888 7999999988777643
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.34 E-value=1.1e+02 Score=27.99 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=61.8
Q ss_pred cCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---CCeEEEEEcCCcEEEEeCCC-CC
Q 018985 171 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNT-HG 246 (348)
Q Consensus 171 G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~hs~~lt~~G~v~~wG~n~-~g 246 (348)
+.-|.++...||.||.-+.. .+.+|+-+... + +++.+..| .-|.+++..||..|.+-... -+
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~t------------G-ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPAT------------G-EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCCC------------C-ceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 34578888999999986554 35555443321 1 23333333 36888888999999885432 11
Q ss_pred CcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCC-CCCcc
Q 018985 247 QLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG-SNFCL 301 (348)
Q Consensus 247 qLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n-~~gqL 301 (348)
.++ . .....++.+.. .+-+-+.-.+.+++..|.||.-|.+ .+|+|
T Consensus 128 R~d--p--kt~evt~f~lp------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrL 173 (353)
T COG4257 128 RLD--P--KTLEVTRFPLP------LEHADANLETAVFDPWGNLWFTGQIGAYGRL 173 (353)
T ss_pred Eec--C--cccceEEeecc------cccCCCcccceeeCCCccEEEeeccccceec
Confidence 111 1 11222222221 2334456678899999999999974 34444
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.15 E-value=1.1e+02 Score=27.80 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=72.3
Q ss_pred CCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec---CCeeEEEEcCCcEEEEECCC-CCc
Q 018985 120 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVFTCGDNS-SFC 194 (348)
Q Consensus 120 ~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G---~~h~~~lt~~G~vy~wG~n~-~gq 194 (348)
.-|-++. .||.||--+. ..+.+|+-+... -+++.+..| .-|.+++..||..|.+-... .+.
T Consensus 63 ap~dvapapdG~VWft~q-g~gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R 128 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQ-GTGAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGR 128 (353)
T ss_pred CccccccCCCCceEEecC-ccccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcceeEE
Confidence 4566777 9999995443 345555533222 123333322 24888888889888875442 222
Q ss_pred ccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCC-CCCcCCCCCCCCCCceEecCCCCCCCEEE
Q 018985 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT-HGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273 (348)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~-~gqLG~~~~~~~~~p~~v~~~~~~~~v~~ 273 (348)
++....+ ....|.. .+.+-+.--+.+++..|+||.-|.+. ||.|--.. .+++
T Consensus 129 ~dpkt~e-vt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-----------------~~i~ 181 (353)
T COG4257 129 LDPKTLE-VTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-----------------NVIS 181 (353)
T ss_pred ecCcccc-eEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCccc-----------------Ccee
Confidence 2221111 1111111 22233445677899999999998742 34332111 1111
Q ss_pred E----EecCceeEEEEcCCcEEEEe
Q 018985 274 I----AAGPSYMLAVTGNGVVYSFG 294 (348)
Q Consensus 274 I----a~G~~~s~~lt~~g~vy~wG 294 (348)
| .-+.-.-++.|-+|.||.--
T Consensus 182 vfpaPqG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 182 VFPAPQGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred eeccCCCCCCcceEECCCCcEEEEe
Confidence 1 12455667888999998763
No 46
>PF13013 F-box-like_2: F-box-like domain
Probab=62.97 E-value=3.5 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred ccccCChHHHHHHHhhCCCCchhhhhhcccccccc
Q 018985 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFG 43 (348)
Q Consensus 9 ~~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~ 43 (348)
.+.|||.+|...|+ .+....++..++.+++.+.
T Consensus 21 tl~DLP~ELl~~I~--~~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 21 TLLDLPWELLQLIF--DYCNDPILLALSRTCRAYR 53 (109)
T ss_pred chhhChHHHHHHHH--hhcCcHHHHHHHHHHHHHH
Confidence 47899999999999 9999999999999888543
No 47
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=62.93 E-value=1.4e+02 Score=28.23 Aligned_cols=73 Identities=8% Similarity=0.060 Sum_probs=42.6
Q ss_pred cEEEEecCCeEEEE-ECC-eEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC---------eeEEEEcC
Q 018985 113 NMQITTGRYHTLLI-SNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN---------HAAFVLQS 181 (348)
Q Consensus 113 i~~ia~G~~h~~~l-~~G-~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~---------h~~~lt~~ 181 (348)
+..|..|...-.++ .|| .+|..- ..+-++-++.... .-..+.......+.+|..+.. +.++|+.|
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva~-~~~~R~~~G~~~d---~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHAS-TVYSRIARGKRTD---YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEEe-ccccccccCCCCC---EEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence 45577776544457 555 466543 3334444444444 234445555556667776555 48999999
Q ss_pred Cc-EEEEEC
Q 018985 182 GQ-VFTCGD 189 (348)
Q Consensus 182 G~-vy~wG~ 189 (348)
|+ +|..-.
T Consensus 116 gk~l~V~n~ 124 (352)
T TIGR02658 116 NKTLLFYQF 124 (352)
T ss_pred CCEEEEecC
Confidence 96 776643
No 48
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=61.95 E-value=1.2e+02 Score=28.70 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=59.9
Q ss_pred cEEEEecCC-eEE-EE-ECCe-EEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC-eeEEEEcCCcEEEE
Q 018985 113 NMQITTGRY-HTL-LI-SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTC 187 (348)
Q Consensus 113 i~~ia~G~~-h~~-~l-~~G~-vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~-h~~~lt~~G~vy~w 187 (348)
+..|..|.. |.. +. .||+ +|..+. .|. ...+.+.....+..|..|.. +.++++.||+...-
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~------------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANR--DGT------------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEET--TSE------------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcC--CCe------------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 677887654 664 45 6665 888653 232 34666777778888888875 78889999986665
Q ss_pred ECCCCCcccCCCCCCceeecE-Eecc------cCCCceeEEEecC---CeEEEEEcCCcEEEEe
Q 018985 188 GDNSSFCCGHRDTNRPIFRPR-LVEA------LKGVPCKQVTAGL---NFTGFLTIRGHVHTCG 241 (348)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~-~v~~------~~~~~i~~i~~G~---~hs~~lt~~G~v~~wG 241 (348)
++..-+++-.-+... ..|. .|+. ....++..|..-. .+.+.+.+.|++|.--
T Consensus 95 ~n~~~~~v~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 95 ANYEPGTVSVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EecCCCceeEecccc--ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 655555555433321 1111 1110 1233555555422 2556666778888774
No 49
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=61.71 E-value=1.1e+02 Score=29.06 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.7
Q ss_pred CeEEEE-ECCeEEEEeCC
Q 018985 121 YHTLLI-SNSSVFSCGSS 137 (348)
Q Consensus 121 ~h~~~l-~~G~vy~wG~n 137 (348)
.|+++. .+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 477666 89999999974
No 50
>PHA03098 kelch-like protein; Provisional
Probab=60.83 E-value=1.3e+02 Score=29.88 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.8
Q ss_pred CeEEEEECCeEEEEeCCC
Q 018985 121 YHTLLISNSSVFSCGSSL 138 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n~ 138 (348)
.|+++.-+|+||.+|-..
T Consensus 335 ~~~~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGIY 352 (534)
T ss_pred cceEEEECCEEEEEeCCC
Confidence 355444889999999643
No 51
>PLN02153 epithiospecifier protein
Probab=60.70 E-value=1.4e+02 Score=27.63 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=11.8
Q ss_pred eEEEEECCeEEEEeCC
Q 018985 122 HTLLISNSSVFSCGSS 137 (348)
Q Consensus 122 h~~~l~~G~vy~wG~n 137 (348)
|+++.-+++||.+|-.
T Consensus 79 ~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 79 VRMVAVGTKLYIFGGR 94 (341)
T ss_pred eEEEEECCEEEEECCC
Confidence 5555578899999964
No 52
>PHA02790 Kelch-like protein; Provisional
Probab=57.97 E-value=75 Score=31.30 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=11.6
Q ss_pred CeEEEEEcCCcEEEEeCC
Q 018985 226 NFTGFLTIRGHVHTCGSN 243 (348)
Q Consensus 226 ~hs~~lt~~G~v~~wG~n 243 (348)
.|+++ .-+|+||+.|-.
T Consensus 355 ~~~~~-~~~g~IYviGG~ 371 (480)
T PHA02790 355 NPAVA-SINNVIYVIGGH 371 (480)
T ss_pred ccEEE-EECCEEEEecCc
Confidence 34444 448999999854
No 53
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.52 E-value=3.2e+02 Score=30.37 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=78.6
Q ss_pred ECCeEEEEeCCCCCcccCCCCCc-eeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCccc-CCCCCCce
Q 018985 127 SNSSVFSCGSSLCGVLGHGPETT-QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG-HRDTNRPI 204 (348)
Q Consensus 127 ~~G~vy~wG~n~~gqlG~~~~~~-~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG-~~~~~~~~ 204 (348)
.|.++|.|-.++.+++-.-+... ....-..+......-+..| .|-++|...-+|+..|-...-..+ .......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~- 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIFNTS- 171 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccccccc-
Confidence 89999999999877765422222 1111111111111111112 489999999999998853321111 1111110
Q ss_pred eecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCC-----CCcCCCCC-------------CCCCCceEecCC-
Q 018985 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-----GQLGHGDT-------------LDRPTPKSIAPL- 265 (348)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~-----gqLG~~~~-------------~~~~~p~~v~~~- 265 (348)
-.| ...+..|..|++ +++|+||.-|.+.. -|.+.+-. -....|..+..+
T Consensus 172 ---~~i-~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 172 ---FKI-SVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ---eee-ecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 111 123444555543 45666666554430 01111100 012345533333
Q ss_pred CCCCCEEEEEecCceeEE--EEcCCcEEEEeCCCCCccC
Q 018985 266 EEVGSVVQIAAGPSYMLA--VTGNGVVYSFGSGSNFCLG 302 (348)
Q Consensus 266 ~~~~~v~~Ia~G~~~s~~--lt~~g~vy~wG~n~~gqLG 302 (348)
.....|.+|+......+. +++.|.|=+|=...+|+-+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 222489999998877754 6677877777655554433
No 54
>PRK05560 DNA gyrase subunit A; Validated
Probab=54.51 E-value=2.9e+02 Score=29.33 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=80.1
Q ss_pred ecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC-----CeEEEEEcCCcEEEEeCCC
Q 018985 170 ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 170 ~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~n~ 244 (348)
....+.+++|+.|++|..-...-...+..... ......+....+.+|+.+.+-. ...+++|++|.+.---..+
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G--~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTARG--RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC--eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 34456788899999999876543333221111 1111122333556777776644 3578888998766544332
Q ss_pred CCCcCCCCCCCCCCceEecCCCCCCCEEEEEec--CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCC
Q 018985 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (348)
Q Consensus 245 ~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G--~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~ 322 (348)
+-....+ -.....+.....++.+... .++.+++|++|++|.+=...--..|... ....+..+. .+
T Consensus 624 ~~~~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~-~~ 690 (805)
T PRK05560 624 FSNIRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLR-EG 690 (805)
T ss_pred hhhcccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCC-CC
Confidence 2110000 1111111111345544433 4568999999999987543322222111 111112221 23
Q ss_pred CcEEEEEecC---ceeEEEecCCcE
Q 018985 323 IHVVRVSAGD---EHVVALDSSGYV 344 (348)
Q Consensus 323 ~~v~~i~~G~---~ht~al~~~G~v 344 (348)
.+|+.+.+-. .+.+++|+.|.+
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~i 715 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYG 715 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeE
Confidence 4566655432 246667777754
No 55
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=50.72 E-value=44 Score=18.70 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.1
Q ss_pred CcEEEEEecCCeeEEEEcCCcEEE
Q 018985 163 AHVVQVSASENHAAFVLQSGQVFT 186 (348)
Q Consensus 163 ~~i~~ia~G~~h~~~lt~~G~vy~ 186 (348)
++|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 478999999999999998886643
No 56
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=50.32 E-value=19 Score=21.81 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=15.9
Q ss_pred CeEEEEEcCCcEEEEeCCC
Q 018985 226 NFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 226 ~hs~~lt~~G~v~~wG~n~ 244 (348)
-+.++++.+|+||+.|.-.
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 4678999999999999743
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=49.80 E-value=1.7e+02 Score=27.68 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=56.7
Q ss_pred ecCCCCcEEEEEecCC-ee-EEEEcCCc-EEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC-CeEEEEEc
Q 018985 158 NFPSAAHVVQVSASEN-HA-AFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLTI 233 (348)
Q Consensus 158 ~~~~~~~i~~ia~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~hs~~lt~ 233 (348)
.....+.+..|..|.. |. ++.+.||+ +|..+. .|.+. .+.......+..|..|. .+.++++.
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~vs------------viD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTVS------------VIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEEE------------EEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeEE------------EEECCcccEEEEEecCCCcceEEEcC
Confidence 3334446777877654 54 55678886 788653 23332 23333344567777776 56888899
Q ss_pred CCcEEEEeCCCCCCcCCCCCCCCCCceEecCC-----CCCCCEEEEEecCc---eeEEEEcCCcEEEEe
Q 018985 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL-----EEVGSVVQIAAGPS---YMLAVTGNGVVYSFG 294 (348)
Q Consensus 234 ~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~-----~~~~~v~~Ia~G~~---~s~~lt~~g~vy~wG 294 (348)
||+...-++...+++..-+......-..|+.. ....++..|.+... +.+.+.+.+++|.--
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 99866555544455443222211111112111 01125555554333 334556667776653
No 58
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=47.57 E-value=2.9e+02 Score=27.33 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=44.6
Q ss_pred cEEEEEecCCe-eEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeC
Q 018985 164 HVVQVSASENH-AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 164 ~i~~ia~G~~h-~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~ 242 (348)
-|..+..+.+- .+-=+.+|.++.|+...+ .+.. . +...-|.-+++.+-.+|.+.+ |-
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~~~----------~~~k----------~-~~aH~ggv~~L~~lr~GtllS-Gg 305 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKGTN----------RISK----------Q-VHAHDGGVFSLCMLRDGTLLS-GG 305 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCCCc----------eEEe----------E-eeecCCceEEEEEecCccEee-cC
Confidence 44455554443 333356788999986220 0111 1 113446667777777887777 43
Q ss_pred CCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCce
Q 018985 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 280 (348)
Q Consensus 243 n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~ 280 (348)
-+--..--.+......|++++.-. ..|.-|+-|..-
T Consensus 306 KDRki~~Wd~~y~k~r~~elPe~~--G~iRtv~e~~~d 341 (626)
T KOG2106|consen 306 KDRKIILWDDNYRKLRETELPEQF--GPIRTVAEGKGD 341 (626)
T ss_pred ccceEEeccccccccccccCchhc--CCeeEEecCCCc
Confidence 221111111222233444444333 356666665444
No 59
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=44.12 E-value=55 Score=30.31 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=39.3
Q ss_pred EEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC--CeEEEEEcCCcEEEEeC
Q 018985 177 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 177 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~G~v~~wG~ 242 (348)
+..+.|+||.|-... .++...++......+..|+|.+... ...++++++|.||.|-+
T Consensus 324 ~gnq~g~v~vwdL~~---------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN---------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCC---------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 345789999997643 1223556666666777888877765 44556688999999964
No 60
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=43.85 E-value=2.4e+02 Score=27.27 Aligned_cols=111 Identities=8% Similarity=0.071 Sum_probs=54.9
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCC--CCCceEecCCCCCCCEEEEEec------CceeEEEEcCCcEEEEeCCC
Q 018985 226 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLD--RPTPKSIAPLEEVGSVVQIAAG------PSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 226 ~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~--~~~p~~v~~~~~~~~v~~Ia~G------~~~s~~lt~~g~vy~wG~n~ 297 (348)
.|.++.-.+|.+|.+|- ......... ++.-.-+-.+.. .+..+|..+ +.|-+++-.. +++.+|--.
T Consensus 124 shq~va~~s~~l~~fGG----EfaSPnq~qF~HYkD~W~fd~~t-rkweql~~~g~PS~RSGHRMvawK~-~lilFGGFh 197 (521)
T KOG1230|consen 124 SHQAVAVPSNILWLFGG----EFASPNQEQFHHYKDLWLFDLKT-RKWEQLEFGGGPSPRSGHRMVAWKR-QLILFGGFH 197 (521)
T ss_pred cceeEEeccCeEEEecc----ccCCcchhhhhhhhheeeeeecc-chheeeccCCCCCCCccceeEEeee-eEEEEccee
Confidence 56666667779999993 322211110 111111111111 355566554 3455555543 577776210
Q ss_pred CCccCCCCCCCeeeeEEeeccccCCCcEEEEEec-------CceeEEEecCCcEEEeC
Q 018985 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-------DEHVVALDSSGYVSLCS 348 (348)
Q Consensus 298 ~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G-------~~ht~al~~~G~v~~wG 348 (348)
........-..|-.|.....+..++.-+ ..|.++.+-+|.+|.||
T Consensus 198 ------d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 198 ------DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred ------cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEc
Confidence 0112222222333333333355555543 36888889899999998
No 61
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=41.85 E-value=3.1e+02 Score=25.92 Aligned_cols=78 Identities=6% Similarity=-0.003 Sum_probs=39.6
Q ss_pred CCCcEEEEEecCCeeEEEEcCCc-EEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCC---------eEEE
Q 018985 161 SAAHVVQVSASENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN---------FTGF 230 (348)
Q Consensus 161 ~~~~i~~ia~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---------hs~~ 230 (348)
..+-+..|..|...-.+++.||+ +|.+-. .+-.+-.+.....+ ..+..-....+.+|..+.. +.++
T Consensus 36 ~~~v~g~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~d~V---~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRTDYV---EVIDPQTHLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CCEEEEEEEccCCCceeECCCCCEEEEEec-cccccccCCCCCEE---EEEECccCcEEeEEccCCCchhhccCccceEE
Confidence 33345567777654445888764 565432 22222222222111 1122222334555665444 4899
Q ss_pred EEcCCc-EEEEeC
Q 018985 231 LTIRGH-VHTCGS 242 (348)
Q Consensus 231 lt~~G~-v~~wG~ 242 (348)
|+.||+ +|+.-.
T Consensus 112 ls~dgk~l~V~n~ 124 (352)
T TIGR02658 112 LTPDNKTLLFYQF 124 (352)
T ss_pred ECCCCCEEEEecC
Confidence 999996 777643
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=39.17 E-value=33 Score=21.47 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=11.9
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 018985 225 LNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 225 ~~hs~~lt~~G~v~~wG~ 242 (348)
..|+++...+++||.+|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 468888887899999983
No 63
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=38.58 E-value=71 Score=23.08 Aligned_cols=39 Identities=3% Similarity=0.089 Sum_probs=27.8
Q ss_pred cccccCCCCcEEEEec-CCeEEEE-ECCeEEEEeCCCCCcc
Q 018985 104 SDIVETSAGNMQITTG-RYHTLLI-SNSSVFSCGSSLCGVL 142 (348)
Q Consensus 104 p~~~~~~~~i~~ia~G-~~h~~~l-~~G~vy~wG~n~~gql 142 (348)
|..++....-..|+|. ....++| .||.+|.-+--..|.+
T Consensus 9 Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 9 PASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 5555555667789999 8888999 9999999886556654
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=38.37 E-value=6e+02 Score=28.31 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=45.7
Q ss_pred CCcEEEEecCCe-EEEE---ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEE-ecCCeeEEE-EcCCcE
Q 018985 111 AGNMQITTGRYH-TLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS-ASENHAAFV-LQSGQV 184 (348)
Q Consensus 111 ~~i~~ia~G~~h-~~~l---~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia-~G~~h~~~l-t~~G~v 184 (348)
..+.+++....| ++++ +||.|=.|-.-. -.|.+..... ...-.+...++..+. |+..+.+|+ ++||.|
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS----~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARS----ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeee----eEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 346688888888 6666 899999997643 2233222211 111122344555554 555555555 788999
Q ss_pred EEEECCCC
Q 018985 185 FTCGDNSS 192 (348)
Q Consensus 185 y~wG~n~~ 192 (348)
-..+-+.+
T Consensus 1123 ~~~~id~~ 1130 (1431)
T KOG1240|consen 1123 RVLRIDHY 1130 (1431)
T ss_pred EEEEcccc
Confidence 88887664
No 65
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=38.33 E-value=57 Score=23.53 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=25.7
Q ss_pred CcEEEEEec-CCeeEEEEcCCcEEEEECCCCCccc
Q 018985 163 AHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCG 196 (348)
Q Consensus 163 ~~i~~ia~G-~~h~~~lt~~G~vy~wG~n~~gqlG 196 (348)
..=..|+|. ....++|++||.+|.-+--+.|++=
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 355679999 8899999999999999876666553
No 66
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=37.18 E-value=87 Score=31.39 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=36.7
Q ss_pred cCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCC
Q 018985 180 QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 180 ~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~ 244 (348)
+||++|+. +.+.|-.|.....+....|..+..+.... -...+++|+||.||-=|...
T Consensus 283 ~dG~l~AI-NPE~GfFGVapGtn~~tnP~am~~l~~n~-------IFTNVa~t~DG~vwWeG~~~ 339 (579)
T cd00819 283 EDGRLYAI-NPEAGFFGVAPGTNAKTNPNAMATLHKNT-------IFTNVALTEDGDVWWEGLTE 339 (579)
T ss_pred CCCcEEEE-cCCCCeeEeCCCCCCCcCHHHHHHhcCCc-------eEEEEeEcCCCCeeCCCCCC
Confidence 36888876 44567777666655566676666554321 14567899999998666543
No 67
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=37.08 E-value=65 Score=17.75 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=13.9
Q ss_pred eeEEEEcCCcEEEEECCC
Q 018985 174 HAAFVLQSGQVFTCGDNS 191 (348)
Q Consensus 174 h~~~lt~~G~vy~wG~n~ 191 (348)
|.++++.+|+||..-.++
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 677888999999876543
No 68
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=37.02 E-value=5.5e+02 Score=27.41 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=38.8
Q ss_pred ecCCeeEEEEcCCc-EEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEE
Q 018985 170 ASENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (348)
Q Consensus 170 ~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~w 240 (348)
.+....++++.+|+ |+++|.+.. .-.-........|..+.. .+..|..|+|-..|-+.-++++.|-..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~--ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD--IRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc--eEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEe
Confidence 34445566666664 455555431 111111112245555543 466799999999999888888865443
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=36.43 E-value=2.9e+02 Score=23.99 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=28.0
Q ss_pred ceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEec--CceeEEEec
Q 018985 279 SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDS 340 (348)
Q Consensus 279 ~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G--~~ht~al~~ 340 (348)
--.++++.+|+||+.........-...... .-..|..+ ...++.++.| +..++.+|+
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~G~--~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPDGK--LLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETTSC--EEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCCcc--EEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 557889999999987442221111111111 12223322 1257777775 446666654
No 70
>PRK05560 DNA gyrase subunit A; Validated
Probab=35.88 E-value=5.6e+02 Score=27.24 Aligned_cols=159 Identities=13% Similarity=0.024 Sum_probs=82.2
Q ss_pred CeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC-----CeeEEEEcCCcEEEEECCCCCc
Q 018985 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGDNSSFC 194 (348)
Q Consensus 121 ~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~-----~h~~~lt~~G~vy~wG~n~~gq 194 (348)
.+.+++ +.|++|..=...--..+...... .....+.+...++|+.+.+-. ...+++|++|.+----...+-.
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~~G~--~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTARGR--PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCCCCe--EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 334555 89999988665322222111111 011123345556777776654 3578889999876654333211
Q ss_pred ccCCCCCCceeecEEecccCCCceeEEEe--cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEE
Q 018985 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 272 (348)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~ 272 (348)
...+. ...+..-.+..++.+.. ...+.+++|++|++|.+-..+--..|.... .+.+..+.+..+|+
T Consensus 627 ~~r~G-------~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E~Vv 694 (805)
T PRK05560 627 IRSNG-------IIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGDEVV 694 (805)
T ss_pred cccCC-------ceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCCEEE
Confidence 10000 00011012233443333 345688999999999997654433333221 22223334445777
Q ss_pred EEEecC---ceeEEEEcCCcEEEE
Q 018985 273 QIAAGP---SYMLAVTGNGVVYSF 293 (348)
Q Consensus 273 ~Ia~G~---~~s~~lt~~g~vy~w 293 (348)
.+.+.. .+.+++|+.|.+.-.
T Consensus 695 ~~~~v~~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 695 SMDVVREDSQEILTVTENGYGKRT 718 (805)
T ss_pred EEEEEcCCCcEEEEEEeCCeEEEE
Confidence 776643 257788888866544
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=34.86 E-value=3.7e+02 Score=25.04 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=9.9
Q ss_pred ceeEEEEcCCcEEEE
Q 018985 279 SYMLAVTGNGVVYSF 293 (348)
Q Consensus 279 ~~s~~lt~~g~vy~w 293 (348)
++.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 456666777777765
No 72
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=32.69 E-value=6.3e+02 Score=26.86 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=80.9
Q ss_pred CeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec-----CCeeEEEEcCCcEEEEECCCCCc
Q 018985 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGDNSSFC 194 (348)
Q Consensus 121 ~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G-----~~h~~~lt~~G~vy~wG~n~~gq 194 (348)
.+.+++ +.|++|..-...--..+....... ....+.+...++|+.+.+- ....+++|++|.+--.-.+.+-.
T Consensus 547 d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~--i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 547 DYLLFFTNRGKVYWLKVYQIPEASRTAKGKP--IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC--HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 334455 899999984332222221111110 0112334455677776652 13578889999877654433211
Q ss_pred ccCCCCCCceeecEE-ecccCCCceeEEEe--cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCE
Q 018985 195 CGHRDTNRPIFRPRL-VEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (348)
Q Consensus 195 lG~~~~~~~~~~p~~-v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v 271 (348)
.... ... +..-.+..++.+.. ...+.+++|++|++|.+-..+--..|.... .+.+-.+....+|
T Consensus 625 ~~r~--------G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~~~E~V 691 (800)
T TIGR01063 625 IRSN--------GIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLKNEDFV 691 (800)
T ss_pred hccC--------CcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCCCCCEE
Confidence 1000 000 00001223443332 345688999999999997765444443322 2222233333567
Q ss_pred EEEEec--CceeEEEEcCCcEEEEe
Q 018985 272 VQIAAG--PSYMLAVTGNGVVYSFG 294 (348)
Q Consensus 272 ~~Ia~G--~~~s~~lt~~g~vy~wG 294 (348)
+.+.+- ..+.+++|++|.+.-.=
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEE
Confidence 776653 33567888888666553
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=32.18 E-value=3e+02 Score=23.04 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=84.5
Q ss_pred CcEEEEecCC-eEEEE-E-CCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC-eeEEEEc-CCcEEE
Q 018985 112 GNMQITTGRY-HTLLI-S-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQ-SGQVFT 186 (348)
Q Consensus 112 ~i~~ia~G~~-h~~~l-~-~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~-h~~~lt~-~G~vy~ 186 (348)
.|..+..-.. ..++. . +|.|+.|-...... ...+. .....|..++.... ..++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC------------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE------------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4555655443 33444 4 88888886542110 11111 11224666665552 3333333 888888
Q ss_pred EECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCC--eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecC
Q 018985 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (348)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~ 264 (348)
|-...... .. .+. .....|..+..-.. +.++...+|.|..|-.... ..+..
T Consensus 162 ~d~~~~~~---------~~---~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------------~~~~~ 214 (289)
T cd00200 162 WDLRTGKC---------VA---TLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------------KCLGT 214 (289)
T ss_pred EEcccccc---------ce---eEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC--------------ceecc
Confidence 86542100 00 011 11123444444333 4445555788888854331 11111
Q ss_pred C-CCCCCEEEEEecCce-eEEEE-cCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecC--ceeEEEe
Q 018985 265 L-EEVGSVVQIAAGPSY-MLAVT-GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALD 339 (348)
Q Consensus 265 ~-~~~~~v~~Ia~G~~~-s~~lt-~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~--~ht~al~ 339 (348)
+ .....+..++...+. .++.. .+|.++.|-...... ...+.. ....|..+.... ...++..
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-----------~~~~~~---~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-----------VQTLSG---HTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-----------EEEccc---cCCcEEEEEECCCCCEEEEec
Confidence 1 111245666555432 23333 388899886532110 011111 122466666555 4555556
Q ss_pred cCCcEEEe
Q 018985 340 SSGYVSLC 347 (348)
Q Consensus 340 ~~G~v~~w 347 (348)
.||.+..|
T Consensus 281 ~d~~i~iw 288 (289)
T cd00200 281 ADGTIRIW 288 (289)
T ss_pred CCCeEEec
Confidence 88898887
No 74
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.84 E-value=2.9e+02 Score=25.31 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=11.7
Q ss_pred ceeEEEEcCCcEEEEeCC
Q 018985 279 SYMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 279 ~~s~~lt~~g~vy~wG~n 296 (348)
.|++++- +++||++|-.
T Consensus 116 ~~~~~~~-~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACYK-DGTLYVGGGN 132 (323)
T ss_pred CceEEEE-CCEEEEEeCc
Confidence 4555544 6799999864
No 75
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.83 E-value=6.1e+02 Score=28.32 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=78.9
Q ss_pred EEEEcCCcEEEEECCCCCcccCCCCC-CceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCC-CCcCCCCC
Q 018985 176 AFVLQSGQVFTCGDNSSFCCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-GQLGHGDT 253 (348)
Q Consensus 176 ~~lt~~G~vy~wG~n~~gqlG~~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~-gqLG~~~~ 253 (348)
+-+|-|.++|.|-.++.+++-.-+.. ..+..-..++.-.|.-+-.| .|.+++..-=+|+..|-... .+.+.+..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCccccc
Confidence 34688999999999887776543332 11222222322223222222 68999998889999986432 22222211
Q ss_pred CCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCC-----CccCCC-------------CCCCeeeeEEe
Q 018985 254 LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN-----FCLGHG-------------EQHDELQPRAI 315 (348)
Q Consensus 254 ~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~-----gqLG~~-------------~~~~~~~P~~v 315 (348)
... ..|... + ..|..|.+ |++|+||.-|.+.+ +|...+ .......|..+
T Consensus 169 ~~~---~~i~~d-g-~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 169 NTS---FKISVD-G-VSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccc---eeeecC-C-ceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 111 122211 1 23444443 56666666665441 111111 00122356633
Q ss_pred eccccCCCcEEEEEecCceeE--EEecCCcEEEe
Q 018985 316 QTFRRKGIHVVRVSAGDEHVV--ALDSSGYVSLC 347 (348)
Q Consensus 316 ~~~~~~~~~v~~i~~G~~ht~--al~~~G~v~~w 347 (348)
..+......|.+|+-+....+ ++++.|.|=+|
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y 269 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAY 269 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEE
Confidence 333123447899988876654 44566776655
No 76
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=31.79 E-value=3.8e+02 Score=24.03 Aligned_cols=47 Identities=15% Similarity=0.004 Sum_probs=28.2
Q ss_pred CCceeEEEecCCeEEEEEcCCcEEEEeCCCCCC-cCCCCCCCCCCceEe
Q 018985 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQ-LGHGDTLDRPTPKSI 262 (348)
Q Consensus 215 ~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gq-LG~~~~~~~~~p~~v 262 (348)
+.+|-+++.-+.|-+.- -||.||.|-+|+.-. ++....=....|.++
T Consensus 62 dgpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 34567777666665443 469999999998665 443332233344443
No 77
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.52 E-value=4.1e+02 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=12.6
Q ss_pred CeEEEEEcCCcEEEEeCCC
Q 018985 226 NFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 226 ~hs~~lt~~G~v~~wG~n~ 244 (348)
.|++++- +++||++|-..
T Consensus 116 ~~~~~~~-~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYK-DGTLYVGGGNR 133 (323)
T ss_pred CceEEEE-CCEEEEEeCcC
Confidence 4555554 78999999643
No 78
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.12 E-value=6.5e+02 Score=26.49 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred eEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCe--EEEEEcCCcEEEEeCCCCCCcCCCC
Q 018985 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF--TGFLTIRGHVHTCGSNTHGQLGHGD 252 (348)
Q Consensus 175 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h--s~~lt~~G~v~~wG~n~~gqLG~~~ 252 (348)
++++|++|.|-.--...+. +.-+..-.+..++.+..+..| .+++|++|++|.+-.++ ...
T Consensus 497 ~VilTk~G~IKr~~~~~~~-------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~e-----IP~ 558 (735)
T TIGR01062 497 TIILSKMGWVRSAKGHDID-------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDN-----LPS 558 (735)
T ss_pred EEEEecCCEEEeccccccc-------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHh-----cCc
Q ss_pred CCCCCCceEe-cCCCCCCCEEEEEecCce--eEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEE
Q 018985 253 TLDRPTPKSI-APLEEVGSVVQIAAGPSY--MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 329 (348)
Q Consensus 253 ~~~~~~p~~v-~~~~~~~~v~~Ia~G~~~--s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~ 329 (348)
....-.|... -.+.+...|+.+.+.... .+++|+.|..+-.-.+..-....+.......+..-... .+..+.
T Consensus 559 GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~d~lv-----~v~~v~ 633 (735)
T TIGR01062 559 ARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVI-----APLPVN 633 (735)
T ss_pred CccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCCCEEE-----EEEEEc
Q ss_pred ecCceeEEEecCCcEEEe
Q 018985 330 AGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 330 ~G~~ht~al~~~G~v~~w 347 (348)
-..++.++++++|++..+
T Consensus 634 ~~dd~V~liT~~GrlLrf 651 (735)
T TIGR01062 634 GDSDMIAAITEAGRMLVF 651 (735)
T ss_pred CCCCEEEEEeCCCcEEEE
No 79
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=30.65 E-value=1.1e+02 Score=28.53 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.2
Q ss_pred ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCee--EEEEcCCcEEEEEC
Q 018985 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHA--AFVLQSGQVFTCGD 189 (348)
Q Consensus 127 ~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~--~~lt~~G~vy~wG~ 189 (348)
..|+||.|-.... +. ...++.........|+|.+....-+ ++++++|.||.|-.
T Consensus 327 q~g~v~vwdL~~~------ep---~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 327 QSGKVYVWDLDNN------EP---PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEECCCC------CC---ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 8899999975321 11 1234444444555888888777654 45588999999964
No 80
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.96 E-value=6.7e+02 Score=26.30 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=61.4
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCC------CC-CC--CCCceEecCCCCCCCEEEEEecCcee-EEEEcCCcEEE----
Q 018985 227 FTGFLTIRGHVHTCGSNTHGQLGHG------DT-LD--RPTPKSIAPLEEVGSVVQIAAGPSYM-LAVTGNGVVYS---- 292 (348)
Q Consensus 227 hs~~lt~~G~v~~wG~n~~gqLG~~------~~-~~--~~~p~~v~~~~~~~~v~~Ia~G~~~s-~~lt~~g~vy~---- 292 (348)
..++...|+.+|+|=.++..-+-.+ .. .. ....+.+......-.|..|.....-+ +||...-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 5556666899999987765433211 00 00 11222222222223677777654333 44444333332
Q ss_pred --EeCCCCCccCCCCCCCeeeeEEeeccc-cCCCcEEEEE-----ecCceeEEEecCCcEEE
Q 018985 293 --FGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVRVS-----AGDEHVVALDSSGYVSL 346 (348)
Q Consensus 293 --wG~n~~gqLG~~~~~~~~~P~~v~~~~-~~~~~v~~i~-----~G~~ht~al~~~G~v~~ 346 (348)
||.+..-+-|-........|.--..+. .....|.+|. ..+.|-++||+|+.+-.
T Consensus 114 ~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~ 175 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRL 175 (717)
T ss_pred cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEE
Confidence 777654444433223333333322221 2234577774 34789999999997654
No 81
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.91 E-value=7.5e+02 Score=26.85 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=22.7
Q ss_pred cCCCCcEEEEecCCe--EEEE-ECCeEEEEeC
Q 018985 108 ETSAGNMQITTGRYH--TLLI-SNSSVFSCGS 136 (348)
Q Consensus 108 ~~~~~i~~ia~G~~h--~~~l-~~G~vy~wG~ 136 (348)
.....|.+|+....+ .+++ .+|.++.|-.
T Consensus 424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 346679999999888 6777 9998777664
No 82
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=28.89 E-value=5e+02 Score=24.44 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=13.3
Q ss_pred CeeEEEEcCCcEEEEECC
Q 018985 173 NHAAFVLQSGQVFTCGDN 190 (348)
Q Consensus 173 ~h~~~lt~~G~vy~wG~n 190 (348)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 366555478999999864
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=28.60 E-value=2.7e+02 Score=26.99 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=41.4
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEE--EEcCCcEEEEeC
Q 018985 226 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLA--VTGNGVVYSFGS 295 (348)
Q Consensus 226 ~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~--lt~~g~vy~wG~ 295 (348)
.+++++-.||-+|+-|.-+ |++-.-+..+...-.+.+. ...+|+.|+.+.+-... -++|+.|..|-.
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 6777888899998888644 5554333222222222222 22489999988655443 347778999975
No 84
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.42 E-value=25 Score=32.39 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=35.5
Q ss_pred cccccCChHHHHHHHhh---CCCCchhhhhhccccccccCCCCCCCcccccchhh
Q 018985 8 FSIEELPSHLIFEILTS---GRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDL 59 (348)
Q Consensus 8 ~~~~~lP~~~~~~i~~~---~~l~~~~l~~l~~t~~~~~~~~~~~~~~~~~~~~~ 59 (348)
+.|..||++++..||.+ .+|+..+|..+..+|+.|.... -.+.+|...+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~--R~~~lwR~aC~ 157 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA--RDPELWRLACL 157 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH--cChHHHHHHHH
Confidence 34679999998888764 4688888899999999997542 22344555554
No 85
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=28.40 E-value=3.9e+02 Score=23.10 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=13.7
Q ss_pred cCCeEEEEEcCCcEEEEeC
Q 018985 224 GLNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 224 G~~hs~~lt~~G~v~~wG~ 242 (348)
|.---++++.+|+||+.-.
T Consensus 184 g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEE
T ss_pred cCCCcceEcCCCCEEEEEc
Confidence 3356788999999998754
No 86
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=28.36 E-value=5.7e+02 Score=24.97 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=76.2
Q ss_pred cEEEEecCCeEEEE---ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCC--CcEEEEEecCCeeEEEEcCCcEEEE
Q 018985 113 NMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSA--AHVVQVSASENHAAFVLQSGQVFTC 187 (348)
Q Consensus 113 i~~ia~G~~h~~~l---~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~--~~i~~ia~G~~h~~~lt~~G~vy~w 187 (348)
|+.+....+-..++ .||.|+.|=--.--+ ..+ ...+.|+..... ..|+++.+|..- .+.+||+-
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~-----a~~-~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~Ta 194 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS-----ADN-DHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTA 194 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEeecc-----ccc-CCCccceeeeccCcceeEEEEecCCC-----ccceEEEe
Confidence 55554444333333 889999886432111 000 113444433322 278888877653 24455554
Q ss_pred ECCCCCccc---CCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCC-CC-cCCCCCCCCCCceEe
Q 018985 188 GDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-GQ-LGHGDTLDRPTPKSI 262 (348)
Q Consensus 188 G~n~~gqlG---~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~-gq-LG~~~~~~~~~p~~v 262 (348)
+....-.+= .+.--..+..|..+ +.+.+.-+..+.++=+++|.+|..=.... || -|.........-+.+
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si------~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~ 268 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSI------KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI 268 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcc------eeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee
Confidence 433211110 01100112222222 22344446667777788888886543221 11 111111111222222
Q ss_pred cCCCC---CCCEEEEEecCceeEEEE--cCCcEEEEeCCC
Q 018985 263 APLEE---VGSVVQIAAGPSYMLAVT--GNGVVYSFGSGS 297 (348)
Q Consensus 263 ~~~~~---~~~v~~Ia~G~~~s~~lt--~~g~vy~wG~n~ 297 (348)
..+.+ ...|+..+...+-++.+. +||+|-.|--.+
T Consensus 269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 22211 135666666666666664 577777776543
No 87
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=28.14 E-value=66 Score=20.19 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=13.0
Q ss_pred CeEEEEECCeEEEEeCC
Q 018985 121 YHTLLISNSSVFSCGSS 137 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n 137 (348)
.|++++-++++|.+|--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 35555599999999965
No 88
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.67 E-value=2.9e+02 Score=26.33 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=42.2
Q ss_pred cEEEEecCCe---EEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEE
Q 018985 113 NMQITTGRYH---TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (348)
Q Consensus 113 i~~ia~G~~h---~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG 188 (348)
+..+.+|..| .+++ .+|++..|-.+. -+.++. ....+.+|..=.....|++..|+||.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~---------------Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNV---------------LKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCe---------------eeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3345667765 5566 999998886322 223332 3347889998888899999999999987
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=27.29 E-value=1.1e+02 Score=31.62 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEecCCeEEEEECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcc
Q 018985 116 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCC 195 (348)
Q Consensus 116 ia~G~~h~~~l~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gql 195 (348)
++.|..|-+++ +||.|-.|..+ ...+|..+.+ .+++++||.-|.---|.+=.+
T Consensus 138 vSVGsQHDMIV---nv~dWr~N~~~--------------------asnkiss~Vs----av~fsEdgSYfvT~gnrHvk~ 190 (1080)
T KOG1408|consen 138 VSVGSQHDMIV---NVNDWRVNSSG--------------------ASNKISSVVS----AVAFSEDGSYFVTSGNRHVKL 190 (1080)
T ss_pred EeeccccceEE---Ehhhhhhcccc--------------------cccccceeEE----EEEEccCCceeeeeeeeeEEE
Q ss_pred cCCCCCCceeecEEecc-------cCCCceeEEEecCC----eEEEEEcCCcEEEE
Q 018985 196 GHRDTNRPIFRPRLVEA-------LKGVPCKQVTAGLN----FTGFLTIRGHVHTC 240 (348)
Q Consensus 196 G~~~~~~~~~~p~~v~~-------~~~~~i~~i~~G~~----hs~~lt~~G~v~~w 240 (348)
+.-+.......|.++.. +....+..|+||.. .+++||..|.+.-|
T Consensus 191 wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 191 WYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred EEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
No 90
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=26.74 E-value=5.5e+02 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=16.3
Q ss_pred CeEEEE--ECCeEEEEeCCCCCcc
Q 018985 121 YHTLLI--SNSSVFSCGSSLCGVL 142 (348)
Q Consensus 121 ~h~~~l--~~G~vy~wG~n~~gql 142 (348)
.|+++- +||.||+|--++.+++
T Consensus 160 a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred ccEEEeecCCCcEEEEECCCccee
Confidence 355555 9999999998775544
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.18 E-value=1.4e+02 Score=28.81 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=40.0
Q ss_pred CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEE--ecCCcEEEe
Q 018985 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYVSLC 347 (348)
Q Consensus 278 ~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al--~~~G~v~~w 347 (348)
..+++++-.||-+|+-|.-+ +++-.=+. ..+..+..|....-+|+.|+.+++-.... .+|+.|.+|
T Consensus 349 ~~ts~~fHpDgLifgtgt~d-~~vkiwdl---ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPD-GVVKIWDL---KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred eeEEeeEcCCceEEeccCCC-ceEEEEEc---CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 36788888999999888643 44432111 12333333322333788898886544333 478889998
No 92
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=25.67 E-value=1.9e+02 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=12.3
Q ss_pred CeEEEE-ECCeEEEEeCC
Q 018985 121 YHTLLI-SNSSVFSCGSS 137 (348)
Q Consensus 121 ~h~~~l-~~G~vy~wG~n 137 (348)
.|+++. -+|+||..|--
T Consensus 110 ~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 110 GASGFSLHNGQAYFTGGV 127 (346)
T ss_pred ceeEEEEeCCEEEEEcCc
Confidence 355554 78999999863
No 93
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.28 E-value=74 Score=34.16 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=23.7
Q ss_pred CEEEE-EecCceeEEEE--cCCcEEEEeCCCCCccC
Q 018985 270 SVVQI-AAGPSYMLAVT--GNGVVYSFGSGSNFCLG 302 (348)
Q Consensus 270 ~v~~I-a~G~~~s~~lt--~~g~vy~wG~n~~gqLG 302 (348)
.|..+ .|..+-.++|+ +|+++++|+-|..-+|+
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 46666 46666556665 68999999998865565
No 94
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=24.75 E-value=95 Score=22.52 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=18.9
Q ss_pred cCCCceeEEEecCCeEEEEEcCC
Q 018985 213 LKGVPCKQVTAGLNFTGFLTIRG 235 (348)
Q Consensus 213 ~~~~~i~~i~~G~~hs~~lt~~G 235 (348)
.++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 34678999999999999999998
No 95
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=23.88 E-value=5.9e+02 Score=23.65 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=30.6
Q ss_pred CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEe
Q 018985 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 278 ~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
..+.++.+.+|.||++-..+ |++- . +++... .. -...-..-+++.++.+.||+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~-------~---~~~~~~-~~-~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFV-------A---RLKTDG-SG-IASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEE-------E---EEEcCC-Cc-cccCCEEECCEEEEEeCCceEEEe
Confidence 35667778899999985433 2211 0 111000 00 011112233567888899999986
No 96
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.69 E-value=4.4e+02 Score=22.03 Aligned_cols=146 Identities=10% Similarity=0.005 Sum_probs=68.6
Q ss_pred CcEEEEecCC-eEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC--eeEEEEcCCcEEE
Q 018985 112 GNMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFT 186 (348)
Q Consensus 112 ~i~~ia~G~~-h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~ 186 (348)
.|..++--.. ..++. .+|.++.|-...... ...... ....+..+..-.. ..++...+|.|+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL------------LRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc------------EEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3555555443 23333 689999986543210 011111 1123334443332 4555566899999
Q ss_pred EECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCC-eEEEEEc-CCcEEEEeCCCCCCcCCCCCCCCCCceEecC
Q 018985 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTI-RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (348)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~~lt~-~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~ 264 (348)
|-..... ....+.. ....|..+..-.. ..++... +|.|+.|-...... ...+..
T Consensus 78 ~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~ 133 (289)
T cd00200 78 WDLETGE------------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------LTTLRG 133 (289)
T ss_pred EEcCccc------------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------EEEecc
Confidence 9765320 0111111 1123555554433 3444444 88999987542111 111111
Q ss_pred CCCCCCEEEEEecCc-eeEEEEc-CCcEEEEeCC
Q 018985 265 LEEVGSVVQIAAGPS-YMLAVTG-NGVVYSFGSG 296 (348)
Q Consensus 265 ~~~~~~v~~Ia~G~~-~s~~lt~-~g~vy~wG~n 296 (348)
. ...|..++.... ..++... +|.++.|-..
T Consensus 134 ~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 134 H--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred C--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 1 124666665553 3333333 8888888653
No 97
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=23.46 E-value=6.7e+02 Score=24.09 Aligned_cols=71 Identities=11% Similarity=-0.073 Sum_probs=41.1
Q ss_pred CcEEEEEe-cCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecc--cCCCceeEEEecCCeEEEEEcCCcEEE
Q 018985 163 AHVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA--LKGVPCKQVTAGLNFTGFLTIRGHVHT 239 (348)
Q Consensus 163 ~~i~~ia~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~--~~~~~i~~i~~G~~hs~~lt~~G~v~~ 239 (348)
.+|+.+.- -..+-++|.++|.++..- -+|.. ....+..+.. ....++-.+..+.+=.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 46666654 345788889999988863 33333 0122222211 112233444555555788999999998
Q ss_pred EeC
Q 018985 240 CGS 242 (348)
Q Consensus 240 wG~ 242 (348)
-=.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 843
No 98
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.34 E-value=9.3e+02 Score=25.35 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=69.3
Q ss_pred cEEEEecCCe--EEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEE--cCCcEEEE
Q 018985 113 NMQITTGRYH--TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVL--QSGQVFTC 187 (348)
Q Consensus 113 i~~ia~G~~h--~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt--~~G~vy~w 187 (348)
|-+++.+..- ++++ ..|.=.+.|+..-|||..=.-.......+ +--...+|..++-..+-.++.| +||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK--QQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee--ccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 4455555433 3344 56888888888888887533222100000 0111236777777777555554 78888888
Q ss_pred ECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCC
Q 018985 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHG 246 (348)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~g 246 (348)
-..+--+ .. +--+.-.+...++.+.-.+..+-.+-||.|-+|-...|-
T Consensus 378 n~~SgfC---------~v--TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 378 NTQSGFC---------FV--TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred eccCceE---------EE--EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 6544111 11 111222345567777777777777789999999876654
No 99
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.93 E-value=1.4e+02 Score=32.20 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=18.5
Q ss_pred cEEEEE-ecCceeEEEe--cCCcEEEeC
Q 018985 324 HVVRVS-AGDEHVVALD--SSGYVSLCS 348 (348)
Q Consensus 324 ~v~~i~-~G~~ht~al~--~~G~v~~wG 348 (348)
.|.+++ |..+-.++|+ +|+++++|+
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEec
Confidence 467665 7777566665 799999995
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.71 E-value=8.9e+02 Score=24.92 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=31.6
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEE--cCCcEEEEeCCCCCc
Q 018985 227 FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT--GNGVVYSFGSGSNFC 300 (348)
Q Consensus 227 hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt--~~g~vy~wG~n~~gq 300 (348)
+++|....|.+++-|.-+ +-|-.-+......-+++..-. .+|+.+-.-.+-+-+|+ +||.+-.|-.+.+-+
T Consensus 175 YSLA~N~t~t~ivsGgte-k~lr~wDprt~~kimkLrGHT--dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTE-KDLRLWDPRTCKKIMKLRGHT--DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC 247 (735)
T ss_pred eeeecCCcceEEEecCcc-cceEEeccccccceeeeeccc--cceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence 455556666666655322 111111111122222333222 24555555544444443 567777776554433
No 101
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=20.45 E-value=2.4e+02 Score=19.43 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=18.3
Q ss_pred cEEEEEecCceeEEEecCCcEEEe
Q 018985 324 HVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 324 ~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
..+.+-+-..+++++++.|.-|+|
T Consensus 26 P~~n~LsNg~y~~mvt~~G~GySw 49 (66)
T PF06204_consen 26 PWVNVLSNGSYGVMVTNSGSGYSW 49 (66)
T ss_dssp --EEEE-SSSEEEEEETTSBEEEE
T ss_pred CEEEEeeCCcEEEEEcCCCceeec
Confidence 567777777889999999999997
No 102
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=20.21 E-value=8.7e+02 Score=24.22 Aligned_cols=54 Identities=20% Similarity=0.099 Sum_probs=29.3
Q ss_pred eeEEEecCCe-EEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEE
Q 018985 218 CKQVTAGLNF-TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292 (348)
Q Consensus 218 i~~i~~G~~h-s~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~ 292 (348)
|..++-+.+- .+-=+.+|.++.|+...+- +. ..+. ..-|.-+++.+..+|++.+
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~---------------~~-----k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNR---------------IS-----KQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCce---------------EE-----eEee-ecCCceEEEEEecCccEee
Confidence 4444444332 3333568899999873210 10 1122 4446667777777776666
Done!