Query 018985
Match_columns 348
No_of_seqs 328 out of 2035
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 09:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 4.4E-56 1.5E-60 425.1 31.2 304 24-348 45-354 (406)
2 4d9s_A UVB-resistance protein 100.0 2.3E-55 7.9E-60 420.2 30.1 282 50-348 15-302 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 1.7E-54 5.8E-59 412.0 27.2 267 65-348 69-342 (389)
4 1a12_A RCC1, regulator of chro 100.0 1.2E-54 4.2E-59 416.2 26.4 304 24-348 37-362 (413)
5 3kci_A Probable E3 ubiquitin-p 100.0 4.8E-54 1.6E-58 408.9 25.9 270 62-348 14-290 (389)
6 1a12_A RCC1, regulator of chro 100.0 2E-53 6.7E-58 407.8 29.9 269 65-348 24-311 (413)
7 3mvd_K Regulator of chromosome 100.0 1.3E-52 4.6E-57 403.2 28.3 263 66-348 92-371 (423)
8 3of7_A Regulator of chromosome 100.0 7.6E-52 2.6E-56 403.2 30.3 272 66-348 27-338 (473)
9 3of7_A Regulator of chromosome 100.0 4.2E-52 1.4E-56 405.0 26.5 315 24-348 39-402 (473)
10 3mvd_K Regulator of chromosome 100.0 2.1E-50 7E-55 388.0 31.4 261 66-348 41-319 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 7.3E-44 2.5E-48 324.0 24.0 203 67-348 41-243 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 9.9E-44 3.4E-48 323.1 21.1 186 106-348 19-204 (282)
13 2ovr_B FBW7, F-BOX/WD repeat p 97.6 0.039 1.3E-06 51.6 26.1 239 6-295 15-266 (445)
14 1p22_A F-BOX/WD-repeat protein 97.5 0.074 2.5E-06 49.6 29.2 187 111-347 174-361 (435)
15 4gbf_A Phikz131; 7-bladed beta 96.6 0.0042 1.4E-07 53.5 6.8 84 163-260 309-395 (400)
16 3v7d_B Cell division control p 96.4 0.59 2E-05 43.5 28.4 197 111-347 163-377 (464)
17 4gbf_A Phikz131; 7-bladed beta 96.3 0.0054 1.8E-07 52.8 5.8 71 111-195 309-380 (400)
18 1k3i_A Galactose oxidase precu 94.9 1.7 5.7E-05 43.1 18.7 105 122-242 190-305 (656)
19 2zwa_A Leucine carboxyl methyl 93.8 0.79 2.7E-05 45.9 13.7 18 278-295 598-615 (695)
20 1fs1_A SKP2 F-BOX, cyclin A/CD 93.1 0.053 1.8E-06 34.8 2.4 35 8-44 7-41 (53)
21 1p22_A F-BOX/WD-repeat protein 91.4 8.5 0.00029 35.2 26.6 185 112-347 135-321 (435)
22 2ovr_B FBW7, F-BOX/WD repeat p 90.2 11 0.00038 34.5 26.6 147 164-347 241-387 (445)
23 2zwa_A Leucine carboxyl methyl 89.5 5.3 0.00018 39.8 14.0 62 172-242 441-508 (695)
24 3ii7_A Kelch-like protein 7; p 88.2 3.7 0.00013 35.8 10.6 18 121-138 48-65 (306)
25 4g56_B MGC81050 protein; prote 87.2 16 0.00054 32.6 24.2 191 110-347 94-297 (357)
26 2woz_A Kelch repeat and BTB do 85.3 8 0.00027 33.9 11.3 17 225-242 150-166 (318)
27 1suu_A DNA gyrase subunit A; t 80.2 31 0.0011 30.5 18.1 162 168-344 54-224 (312)
28 4aez_A CDC20, WD repeat-contai 80.0 33 0.0011 30.7 19.7 145 165-347 96-244 (401)
29 3odt_A Protein DOA1; ubiquitin 79.7 27 0.00091 29.5 23.3 181 111-347 105-292 (313)
30 1zgk_A Kelch-like ECH-associat 79.3 17 0.00058 31.5 11.0 17 121-137 63-79 (308)
31 3no0_A DNA gyrase subunit A; D 78.9 32 0.0011 29.9 20.7 201 113-346 26-239 (276)
32 2xn4_A Kelch-like protein 2; s 78.6 22 0.00076 30.5 11.5 17 121-137 54-70 (302)
33 3p6j_A De novo designed beta-t 78.4 20 0.00069 27.9 9.7 108 214-346 28-138 (142)
34 2xyi_A Probable histone-bindin 77.7 41 0.0014 30.5 20.5 207 113-347 184-406 (430)
35 3uc1_A DNA gyrase subunit A; D 75.6 44 0.0015 29.8 19.3 162 168-344 49-221 (327)
36 3sfz_A APAF-1, apoptotic pepti 75.5 84 0.0029 33.0 17.2 111 217-347 1129-1245(1249)
37 3l2o_B F-box only protein 4; s 75.2 0.66 2.3E-05 41.2 0.3 33 9-43 4-36 (312)
38 1k3i_A Galactose oxidase precu 75.0 11 0.00037 37.1 9.2 55 280-348 246-304 (656)
39 2vpj_A Kelch-like protein 12; 74.2 41 0.0014 28.7 16.0 18 121-138 55-72 (301)
40 3zwl_B Eukaryotic translation 73.7 43 0.0015 28.8 24.4 196 112-347 34-245 (369)
41 1xip_A Nucleoporin NUP159; bet 73.0 56 0.0019 29.9 13.1 65 218-296 90-154 (388)
42 3k26_A Polycomb protein EED; W 72.9 45 0.0016 28.7 21.5 161 112-297 71-260 (366)
43 1gxr_A ESG1, transducin-like e 71.5 46 0.0016 28.2 22.7 194 117-347 8-210 (337)
44 4asc_A Kelch repeat and BTB do 71.3 17 0.00059 31.6 8.8 18 225-243 140-157 (315)
45 4aez_A CDC20, WD repeat-contai 64.0 79 0.0027 28.1 26.6 148 113-297 96-248 (401)
46 3no0_A DNA gyrase subunit A; D 63.8 72 0.0025 27.5 17.8 157 164-345 25-190 (276)
47 2xyi_A Probable histone-bindin 62.7 89 0.003 28.2 23.0 205 110-347 128-349 (430)
48 4gqb_B Methylosome protein 50; 61.9 83 0.0028 27.6 26.9 189 110-347 82-285 (344)
49 1wp5_A Topoisomerase IV; broke 61.0 89 0.003 27.7 14.6 121 168-296 46-173 (323)
50 1zi0_A DNA gyrase subunit A; b 60.2 88 0.003 27.4 19.3 162 168-344 49-219 (307)
51 3mmy_A MRNA export factor; mRN 58.8 86 0.0029 26.8 24.4 148 111-297 40-199 (368)
52 3f3f_A Nucleoporin SEH1; struc 57.5 85 0.0029 26.4 25.1 120 112-244 13-143 (351)
53 3uc1_A DNA gyrase subunit A; D 57.3 1E+02 0.0036 27.3 23.9 161 119-294 52-225 (327)
54 1r5m_A SIR4-interacting protei 56.6 1E+02 0.0035 27.0 17.8 198 113-347 209-421 (425)
55 2uvk_A YJHT; unknown function, 55.4 29 0.001 30.6 7.3 16 332-348 110-125 (357)
56 1suu_A DNA gyrase subunit A; t 54.4 1.1E+02 0.0038 26.8 21.4 172 116-302 54-236 (312)
57 3jrp_A Fusion protein of prote 53.3 1.1E+02 0.0037 26.3 25.8 193 112-347 13-236 (379)
58 3jro_A Fusion protein of prote 53.3 1.8E+02 0.0061 28.7 24.9 153 163-347 54-234 (753)
59 3l6v_A GYRA, DNA gyrase subuni 53.1 1.3E+02 0.0045 27.2 19.5 129 159-296 42-179 (370)
60 4a11_B DNA excision repair pro 52.2 1.2E+02 0.004 26.4 22.8 205 112-347 45-272 (408)
61 3odt_A Protein DOA1; ubiquitin 51.0 1.1E+02 0.0036 25.5 23.5 145 112-294 20-171 (313)
62 1wp5_A Topoisomerase IV; broke 50.7 1.3E+02 0.0045 26.5 22.6 212 116-345 46-271 (323)
63 3mkq_A Coatomer beta'-subunit; 48.4 2E+02 0.007 28.0 22.1 149 112-297 99-259 (814)
64 4e54_B DNA damage-binding prot 47.5 1.6E+02 0.0054 26.5 16.7 151 109-296 118-281 (435)
65 1rwi_B Serine/threonine-protei 47.4 1.2E+02 0.0039 24.9 13.8 17 173-189 69-85 (270)
66 4g56_B MGC81050 protein; prote 46.6 1.5E+02 0.0051 25.9 26.2 184 112-347 141-339 (357)
67 1zi0_A DNA gyrase subunit A; b 46.2 1.5E+02 0.0051 25.9 23.3 210 116-345 49-271 (307)
68 2e31_A FBS1, F-box only protei 45.5 8.6 0.00029 34.0 1.9 34 8-43 49-83 (297)
69 2ast_B S-phase kinase-associat 45.4 8.4 0.00029 33.9 1.9 34 9-44 8-41 (336)
70 3mmy_A MRNA export factor; mRN 45.1 1.4E+02 0.0049 25.3 18.2 109 163-296 40-159 (368)
71 3mkq_A Coatomer beta'-subunit; 45.0 2.3E+02 0.0079 27.7 20.4 184 113-347 58-255 (814)
72 1sq9_A Antiviral protein SKI8; 44.6 1.6E+02 0.0054 25.6 19.6 110 164-296 188-321 (397)
73 4gga_A P55CDC, cell division c 43.5 1.8E+02 0.0061 25.9 19.7 144 116-296 111-260 (420)
74 3l6v_A GYRA, DNA gyrase subuni 43.5 1.9E+02 0.0064 26.2 23.3 123 119-251 56-187 (370)
75 3q7x_A De novo designed beta-t 42.9 1.1E+02 0.0037 23.2 7.8 103 219-346 9-113 (132)
76 3f3f_A Nucleoporin SEH1; struc 41.5 1.5E+02 0.0053 24.6 24.4 77 111-191 58-143 (351)
77 4asc_A Kelch repeat and BTB do 41.1 1.4E+02 0.0049 25.5 9.4 17 121-137 141-157 (315)
78 2uvk_A YJHT; unknown function, 37.8 88 0.003 27.4 7.5 17 278-295 110-126 (357)
79 1rwi_B Serine/threonine-protei 37.1 1.2E+02 0.004 24.8 7.9 13 174-186 27-39 (270)
80 1gxr_A ESG1, transducin-like e 36.7 1.9E+02 0.0063 24.2 27.4 154 110-296 51-213 (337)
81 3sfz_A APAF-1, apoptotic pepti 34.9 4.1E+02 0.014 27.6 18.4 152 164-347 1046-1203(1249)
82 1yfq_A Cell cycle arrest prote 34.7 2.1E+02 0.007 24.1 21.6 197 112-347 13-221 (342)
83 4aow_A Guanine nucleotide-bind 32.6 2.2E+02 0.0075 23.8 21.8 112 217-347 217-333 (340)
84 3jro_A Fusion protein of prote 31.8 3.8E+02 0.013 26.3 22.6 154 112-297 55-238 (753)
85 3i2n_A WD repeat-containing pr 31.1 2.4E+02 0.0081 23.8 22.3 252 67-347 65-349 (357)
86 2qc5_A Streptogramin B lactona 29.8 2.3E+02 0.0079 23.2 15.4 17 226-242 64-80 (300)
87 4ery_A WD repeat-containing pr 25.3 2.9E+02 0.01 22.9 22.3 146 112-296 25-179 (312)
88 3k26_A Polycomb protein EED; W 24.9 3.1E+02 0.011 23.1 22.8 152 163-347 19-188 (366)
89 3jrp_A Fusion protein of prote 24.9 3.2E+02 0.011 23.1 27.5 195 112-347 57-283 (379)
90 2aq5_A Coronin-1A; WD40 repeat 24.6 3.5E+02 0.012 23.6 20.5 151 168-347 40-203 (402)
91 3snv_A Symfoil-4T/permutation 24.3 2.4E+02 0.0082 21.6 7.4 64 270-346 51-116 (143)
92 3v7d_B Cell division control p 24.2 3.8E+02 0.013 23.8 27.7 109 163-297 271-381 (464)
93 1q7f_A NHL, brain tumor CG1071 24.0 3E+02 0.01 22.5 20.6 16 174-189 124-139 (286)
94 2p1m_B Transport inhibitor res 23.0 25 0.00086 33.5 1.1 34 8-43 4-38 (594)
95 1zvu_A Topoisomerase IV subuni 22.7 5.7E+02 0.02 25.4 11.4 123 169-302 511-638 (716)
96 1sq9_A Antiviral protein SKI8; 21.8 3.8E+02 0.013 23.0 18.8 122 163-297 17-157 (397)
97 3sjl_D Methylamine dehydrogena 21.7 4.5E+02 0.015 23.7 11.6 170 113-293 72-252 (386)
98 4gqb_B Methylosome protein 50; 21.4 4E+02 0.014 23.0 24.9 146 163-347 170-327 (344)
99 3no2_A Uncharacterized protein 21.3 3.6E+02 0.012 22.5 17.1 12 333-344 244-255 (276)
100 3c75_H MADH, methylamine dehyd 20.8 4.3E+02 0.015 24.2 9.1 84 155-242 102-196 (426)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.4e-56 Score=425.15 Aligned_cols=304 Identities=23% Similarity=0.259 Sum_probs=253.0
Q ss_pred hCCCCchhhhhhccccccccCCCCCCCcccccchhhHHHHHh--ccc-eeeeeecccccceeeecccCCccccccccccc
Q 018985 24 SGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLC--ALH-SIYAGMSRNVQIELLNRCNGNWKRVLRFLQSV 100 (348)
Q Consensus 24 ~~~l~~~~l~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~ 100 (348)
.|||+.++.... .+|+.++. +...++.++.....+.++ .++ .+|. ||.|..|||+..... .
T Consensus 45 ~GqLG~g~~~~~-~~P~~v~~---l~~~~i~~va~G~~ht~al~~~gg~v~~-wG~n~~GqLG~g~~~---~-------- 108 (406)
T 4d9s_A 45 DGQLGHGDAEDR-PSPTQLSA---LDGHQIVSVTCGADHTVAYSQSGMEVYS-WGWGDFGRLGHGNSS---D-------- 108 (406)
T ss_dssp TSTTCSSSCCCE-EEEEECGG---GTTSCEEEEEECSSEEEEEETTTTEEEE-EECCGGGTTCSSSCC---C--------
T ss_pred CCCCCCCCcccC-cCCEEecc---cCCCCEEEEEeCcceEEEEECCCCEEEE-EcCCCCcCCCCCCCC---c--------
Confidence 366766654432 34544431 222344444444444432 344 8999 999999999853221 1
Q ss_pred cccccccc--CCCCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEE
Q 018985 101 EHSSDIVE--TSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAF 177 (348)
Q Consensus 101 ~~~p~~~~--~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~ 177 (348)
...|.+++ ...+|++|+||..|+++| ++|+||+||.|.+||||.+.... ...|+++..+...+|++|+||.+|+++
T Consensus 109 ~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v~~~~~~~i~~va~G~~hs~a 187 (406)
T 4d9s_A 109 LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED-SLVPQKIQAFEGIRIKMVAAGAEHTAA 187 (406)
T ss_dssp EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC-cccceEecccCCCcEEEEecCCCeEEE
Confidence 11233333 344799999999999999 99999999999999999998766 566777777667799999999999999
Q ss_pred EEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCC
Q 018985 178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP 257 (348)
Q Consensus 178 lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~ 257 (348)
|+++|+||+||.|.+||||.++... ...|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++.....
T Consensus 188 lt~~G~v~~wG~n~~GqlG~g~~~~-~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~ 266 (406)
T 4d9s_A 188 VTEDGDLYGWGWGRYGNLGLGDRTD-RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL 266 (406)
T ss_dssp EETTSCEEEEECCTTSTTCSSSSCC-EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEE
T ss_pred EeCCCCEEEeeCCCCCCCCCCCCCC-cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCcc
Confidence 9999999999999999999988764 788999998888899999999999999999999999999999999999988889
Q ss_pred CceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEE
Q 018985 258 TPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVA 337 (348)
Q Consensus 258 ~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~a 337 (348)
.|++++.+.. .+|++|+||.+|++||+++|+||+||.|.+||||.++..+...|++|..+. ..+|++|+||.+|++|
T Consensus 267 ~p~~v~~~~~-~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~va~G~~hs~a 343 (406)
T 4d9s_A 267 IPHKLEALSN-SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQKVVQVSCGWRHTLA 343 (406)
T ss_dssp EEEECGGGTT-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG--GCCEEEEEECSSEEEE
T ss_pred ccEEecccCC-CCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC--CCcEEEEEeCCCeEEE
Confidence 9999998765 579999999999999999999999999999999999999999999998764 3479999999999999
Q ss_pred EecCCcEEEeC
Q 018985 338 LDSSGYVSLCS 348 (348)
Q Consensus 338 l~~~G~v~~wG 348 (348)
|+++|+||+||
T Consensus 344 lt~~G~v~~wG 354 (406)
T 4d9s_A 344 VTERNNVFAWG 354 (406)
T ss_dssp EETTSCEEEEE
T ss_pred EeCCCCEEEec
Confidence 99999999998
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.3e-55 Score=420.20 Aligned_cols=282 Identities=24% Similarity=0.338 Sum_probs=245.0
Q ss_pred CcccccchhhHHHHH--hccceeeeeecccccceeeecccCCcccccccccccccccccccC--CCCcEEEEecCCeEEE
Q 018985 50 PQKFRSLVDLAASQL--CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVET--SAGNMQITTGRYHTLL 125 (348)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~i~~ia~G~~h~~~ 125 (348)
+.++..+.....+.+ ..++.+|+ ||.|.+|||+....++ ...|..++. ..+|++|+||..|+++
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~-wG~n~~GqLG~g~~~~-----------~~~P~~v~~l~~~~i~~va~G~~ht~a 82 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCS-WGRGEDGQLGHGDAED-----------RPSPTQLSALDGHQIVSVTCGADHTVA 82 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEE-EECCTTSTTCSSSCCC-----------EEEEEECGGGTTSCEEEEEECSSEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEE-EeCCCCCCCCCCCccc-----------CcCCEEecccCCCCEEEEEeCcceEEE
Confidence 344444554444443 35789999 9999999998643221 123444443 3479999999999999
Q ss_pred E-ECC-eEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCc
Q 018985 126 I-SNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP 203 (348)
Q Consensus 126 l-~~G-~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 203 (348)
| ++| +||+||.|.+||||.+.... ...|.++......+|++|+||.+|+++|+++|+||+||.|.+||||.++...
T Consensus 83 l~~~gg~v~~wG~n~~GqLG~g~~~~-~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~- 160 (406)
T 4d9s_A 83 YSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED- 160 (406)
T ss_dssp EETTTTEEEEEECCGGGTTCSSSCCC-EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC-
T ss_pred EECCCCEEEEEcCCCCcCCCCCCCCc-cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC-
Confidence 9 765 99999999999999988755 5667777777777999999999999999999999999999999999988764
Q ss_pred eeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEE
Q 018985 204 IFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLA 283 (348)
Q Consensus 204 ~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~ 283 (348)
...|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.++......|.++..+.. .+|++|+||.+|+++
T Consensus 161 ~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 161 SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTIS 239 (406)
T ss_dssp EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTT-CCEEEEEECSSEEEE
T ss_pred cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCC-ceEEEEEECCCcEEE
Confidence 7899999999999999999999999999999999999999999999999988899999987765 589999999999999
Q ss_pred EEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 284 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 284 lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
|+++|+||+||.|.+||||+++..+...|+++..+. +.+|++|+||.+|++||+++|+||+||
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~v~~i~~G~~hs~alt~~G~v~~wG 302 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS--NSFISQISGGWRHTMALTSDGKLYGWG 302 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--TSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccC--CCCEEEEEecCCEEEEEcCCCeEEEee
Confidence 999999999999999999999999999999998774 457999999999999999999999998
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-54 Score=412.03 Aligned_cols=267 Identities=28% Similarity=0.436 Sum_probs=236.3
Q ss_pred hccceeeeeecccccceeeecccCCcccccccccccccccccccCCC----CcEEEEecCCeEEEE-ECCeEEEEeCCCC
Q 018985 65 CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSA----GNMQITTGRYHTLLI-SNSSVFSCGSSLC 139 (348)
Q Consensus 65 ~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~i~~ia~G~~h~~~l-~~G~vy~wG~n~~ 139 (348)
..++++|. ||.|..|||+....++ ...|..++... ++++|+||..|+++| ++|+||+||.|.+
T Consensus 69 ~~~G~v~~-wG~n~~GqLG~g~~~~-----------~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~ 136 (389)
T 3kci_A 69 TADGKLYA-TGYGAGGRLGIGGTES-----------VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED 136 (389)
T ss_dssp ETTSCEEE-EECCGGGTTSSSSSCC-----------EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGG
T ss_pred cCCCcEEE-EECCCCCCCCCCCcCC-----------ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCC
Confidence 35789999 9999999998632221 11233333322 357899999999999 9999999999999
Q ss_pred CcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCcee
Q 018985 140 GVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK 219 (348)
Q Consensus 140 gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~ 219 (348)
||||.+.... ...|++++.+...+|++|+||.+|+++|+++|+||+||.|.+||||.++... ...|+++..+.+.+|+
T Consensus 137 GqLG~g~~~~-~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 137 GKLGHGNRSP-CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED-QLKPKLVEALQGHRVV 214 (389)
T ss_dssp GTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEECGGGTTSCEE
T ss_pred CcCCCCCCcc-CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc-cccceEecccCCCeEE
Confidence 9999998765 5667777766667999999999999999999999999999999999988764 8899999999999999
Q ss_pred EEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCC
Q 018985 220 QVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 220 ~i~~G~--~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~ 297 (348)
+|+||. .|+++|+++|+||+||.|.+||||.+.......|++|+.+.+ .+|++|+||.+|++||+++|+||+||.|.
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGVVKVECGSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcEEEEeCCCCEEEEEeCCCeEEEEeCCC
Confidence 999995 899999999999999999999999999888899999998765 47999999999999999999999999999
Q ss_pred CCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 298 ~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
+||||+++......|++|..+. +.+|++|+||.+|++|++++|+||+||
T Consensus 294 ~GqLG~g~~~~~~~P~~v~~l~--~~~v~~ia~G~~h~~al~~~G~v~~wG 342 (389)
T 3kci_A 294 YHRLGHGSDDHVRRPRQVQGLQ--GKKVIAIATGSLHCVCCTEDGEVYTWG 342 (389)
T ss_dssp GGTTCSSSCCCEEEEEECGGGT--TCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CCCCCCCCCccccCCeEeccCC--CCCEEEEEeccCeEEEECCCCCEEEee
Confidence 9999999999999999998774 558999999999999999999999998
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.2e-54 Score=416.17 Aligned_cols=304 Identities=20% Similarity=0.228 Sum_probs=245.6
Q ss_pred hCCCCchhhhhhccccccccCCCCCCCcccccchhhHHHHH--hccceeeeeecccccceeeecccCCcccccccccccc
Q 018985 24 SGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQL--CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVE 101 (348)
Q Consensus 24 ~~~l~~~~l~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~ 101 (348)
.|+|+.++......+|+.++. +.++..+.....+.+ ..++.+|. ||.|..|||+.....+ ...
T Consensus 37 ~GqLG~g~~~~~~~~P~~v~~-----~~~i~~va~G~~hs~~l~~~G~v~~-wG~n~~GqLG~~~~~~---------~~~ 101 (413)
T 1a12_A 37 VGQLGLGENVMERKKPALVSI-----PEDVVQAEAGGMHTVCLSKSGQVYS-FGCNDEGALGRDTSVE---------GSE 101 (413)
T ss_dssp TSTTCSCTTCCEEEEEEEECC-----SSCEEEEEECSSEEEEEETTSCEEE-EECCTTSTTCSCCCST---------TGG
T ss_pred CCcCCCCCCccccccceEccC-----CCCeEEEEeCCCeEEEEcCCCCEEE-EECCCCCCCCCCCCCC---------ccc
Confidence 367777664433445665542 234444444444443 34689999 9999999998533210 112
Q ss_pred cccccccCCCCcEEEEecCCeEEEE-ECCeEEEEeC--CCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEE
Q 018985 102 HSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFV 178 (348)
Q Consensus 102 ~~p~~~~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~l 178 (348)
..|..++...+|++|+||.+|+++| ++|+||+||. |.+||||.+........|.++ +...+|++|+||.+|+++|
T Consensus 102 ~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~al 179 (413)
T 1a12_A 102 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVML 179 (413)
T ss_dssp GSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEE
T ss_pred cCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEE
Confidence 3455555566899999999999999 9999999999 999999998766544445555 4556999999999999999
Q ss_pred EcCCcEEEEECCCCCcccCCCCCC----------ceeecEEeccc-----CCCceeEEEecCCeEEEEEcCCcEEEEeCC
Q 018985 179 LQSGQVFTCGDNSSFCCGHRDTNR----------PIFRPRLVEAL-----KGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (348)
Q Consensus 179 t~~G~vy~wG~n~~gqlG~~~~~~----------~~~~p~~v~~~-----~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n 243 (348)
+++|+||+||.|.+||||.+.... ....|+++... ...+|++|+||.+|++||+++|+||+||.|
T Consensus 180 t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n 259 (413)
T 1a12_A 180 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLS 259 (413)
T ss_dssp ETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECC
T ss_pred cCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCC
Confidence 999999999999999999875321 13567777643 456899999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCceEecCCCCC-CCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCC-CCCCeeeeEEeeccccC
Q 018985 244 THGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHG-EQHDELQPRAIQTFRRK 321 (348)
Q Consensus 244 ~~gqLG~~~~~~~~~p~~v~~~~~~-~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~-~~~~~~~P~~v~~~~~~ 321 (348)
.+||||.+.......|++|+.+.+. .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +......|++|+.+.
T Consensus 260 ~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~-- 337 (413)
T 1a12_A 260 NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-- 337 (413)
T ss_dssp TTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--
T ss_pred CCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--
Confidence 9999999998888999999877541 369999999999999999999999999999999999 557778999998764
Q ss_pred CCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 322 GIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 322 ~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
+|++|+||.+|++|++++|+||+||
T Consensus 338 --~v~~v~~G~~hs~alt~~G~v~~wG 362 (413)
T 1a12_A 338 --AVSSVACGASVGYAVTKDGRVFAWG 362 (413)
T ss_dssp --SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred --ceeEEEECcceEEEEeCCCCEEEec
Confidence 7999999999999999999999998
No 5
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-54 Score=408.90 Aligned_cols=270 Identities=26% Similarity=0.380 Sum_probs=231.9
Q ss_pred HHHhccceeeeeecccccceeeecccCCcccccccccccccccccc--cCCCCcEEEEecCCeEEEE-ECCeEEEEeCCC
Q 018985 62 SQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIV--ETSAGNMQITTGRYHTLLI-SNSSVFSCGSSL 138 (348)
Q Consensus 62 ~~~~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~ 138 (348)
..+-.++.+|. ||.|.+|||+.....+ ...|.++ ....+|++|+||..|+++| ++|+||+||.|.
T Consensus 14 ~~l~~~G~v~~-wG~n~~GqLG~~~~~~-----------~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 14 LYFQGSGTIYG-WGHNHRGQLGGIEGAK-----------VKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp -------CEEE-EEECTTSTTSSCSCSE-----------EEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred eeECCCCeEEE-eeCCCCccCCCCcCcc-----------ccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCC
Confidence 34456789999 9999999998432211 1122222 2345799999999999999 999999999999
Q ss_pred CCcccCCCCCceeeceEEeecCCCC--cEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCC
Q 018985 139 CGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGV 216 (348)
Q Consensus 139 ~gqlG~~~~~~~~~~~~~v~~~~~~--~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~ 216 (348)
+||||.+.... ...|++++..... ++++|+||.+|+++|+++|+||+||.|.+||||.++... ...|+++..+.+.
T Consensus 82 ~GqLG~g~~~~-~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v~~l~~~ 159 (389)
T 3kci_A 82 GGRLGIGGTES-VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP-CDRPRVIESLRGI 159 (389)
T ss_dssp GGTTSSSSSCC-EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEECGGGTTS
T ss_pred CCCCCCCCcCC-ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc-CcCCeEecccCCC
Confidence 99999987765 5567777655444 568899999999999999999999999999999988754 7899999999998
Q ss_pred ceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecC--ceeEEEEcCCcEEEEe
Q 018985 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFG 294 (348)
Q Consensus 217 ~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~--~~s~~lt~~g~vy~wG 294 (348)
+|++|+||..|++||+++|+||+||.|.+||||.++......|++++.+.+ .+|++|+||. .|+++|+++|+||+||
T Consensus 160 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG-HRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred eEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC-CeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 999999999999999999999999999999999999988899999988766 5899999995 8999999999999999
Q ss_pred CCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 295 ~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
.|.+||||.+.......|++|..+. +.+|++|+||.+|++||+++|+||+||
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 9999999999998899999998773 557999999999999999999999998
No 6
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2e-53 Score=407.81 Aligned_cols=269 Identities=23% Similarity=0.311 Sum_probs=228.5
Q ss_pred hccceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEE-ECCeEEEEeCCCCCccc
Q 018985 65 CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLG 143 (348)
Q Consensus 65 ~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG 143 (348)
..++.+|+ ||.|.+|||+..... .....|..++...+|++|+||..|+++| ++|+||+||.|.+||||
T Consensus 24 ~~~g~v~~-wG~n~~GqLG~g~~~----------~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG 92 (413)
T 1a12_A 24 TEPGLVLT-LGQGDVGQLGLGENV----------MERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 92 (413)
T ss_dssp CCCBEEEE-EEECTTSTTCSCTTC----------CEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred cCCCcEEE-EECCCCCcCCCCCCc----------cccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCC
Confidence 35789999 999999999864221 1123466677778899999999999999 99999999999999999
Q ss_pred CCCCC-ceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEEC--CCCCcccCCCCCCceeecEEecccCCCceeE
Q 018985 144 HGPET-TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ 220 (348)
Q Consensus 144 ~~~~~-~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~ 220 (348)
++... .....|.++.++ .+|++|+||.+|+++|+++|+||+||. |.+||||.++.......|.++ +...+|++
T Consensus 93 ~~~~~~~~~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ 168 (413)
T 1a12_A 93 RDTSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVK 168 (413)
T ss_dssp SCCCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEE
T ss_pred CCCCCCccccCCeEecCC--CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEE
Confidence 98763 234567777553 489999999999999999999999999 999999998776556678887 45678999
Q ss_pred EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC-----------CCCceEecCCC----CCCCEEEEEecCceeEEEE
Q 018985 221 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-----------RPTPKSIAPLE----EVGSVVQIAAGPSYMLAVT 285 (348)
Q Consensus 221 i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~-----------~~~p~~v~~~~----~~~~v~~Ia~G~~~s~~lt 285 (348)
|+||.+|+++|+++|+||+||.|.+||||.+.... ...|+++.... ...+|++|+||.+|++||+
T Consensus 169 ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt 248 (413)
T 1a12_A 169 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 248 (413)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEE
T ss_pred EEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEe
Confidence 99999999999999999999999999999875421 24676665431 2258999999999999999
Q ss_pred cCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 286 GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 286 ~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
++|+||+||.|.+||||.++......|++|..+.....+|++|+||.+|++||+++|+||+||
T Consensus 249 ~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG 311 (413)
T 1a12_A 249 HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLG 311 (413)
T ss_dssp TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEee
Confidence 999999999999999999999889999999887543357999999999999999999999998
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-52 Score=403.19 Aligned_cols=263 Identities=20% Similarity=0.267 Sum_probs=227.1
Q ss_pred ccceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEE-ECCeEEEEeC--CCCCcc
Q 018985 66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVL 142 (348)
Q Consensus 66 ~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~--n~~gql 142 (348)
.++.+|. ||.|..|||+.....+ .....|..++...+|++|+||..|+++| ++|+||+||. |.+|||
T Consensus 92 ~~G~v~~-wG~n~~GqLG~~~~~~---------~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~Gql 161 (423)
T 3mvd_K 92 KSGDIYS-FGCNDEGALGRDTSED---------GSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNM 161 (423)
T ss_dssp TTSCEEE-EECCSSSTTCSCCCST---------TSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEE
T ss_pred CCCeEEE-eECCCCcCCCCCCcCC---------ccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 5789999 9999999998643221 1223466666777899999999999999 9999999999 999999
Q ss_pred cCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCC----------CceeecEEecc
Q 018985 143 GHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN----------RPIFRPRLVEA 212 (348)
Q Consensus 143 G~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~----------~~~~~p~~v~~ 212 (348)
|.+.... .++|+.++...+|++|+||.+|+++|+++|+||+||.|.+||||.+... .....|.++..
T Consensus 162 G~~~~~~---~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~ 238 (423)
T 3mvd_K 162 GLTIDGN---KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 238 (423)
T ss_dssp ESBTTBC---EEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC
T ss_pred CcCCCCC---CceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee
Confidence 9987665 4677777777899999999999999999999999999999999987642 24568999988
Q ss_pred cCCCceeEEEecCCeEEEE-EcCCcEEEEeCCCCCCcCCCCCCC--CCCceEecCCCCCCCEEEEEecCceeEEEEcCCc
Q 018985 213 LKGVPCKQVTAGLNFTGFL-TIRGHVHTCGSNTHGQLGHGDTLD--RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV 289 (348)
Q Consensus 213 ~~~~~i~~i~~G~~hs~~l-t~~G~v~~wG~n~~gqLG~~~~~~--~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~ 289 (348)
+...+|++|+||.+|++++ +++|+||+||.|.+||||.+.... ...|+++. + .+|++|+||.+|++||+++|+
T Consensus 239 ~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~---~~v~~ia~G~~ht~alt~~G~ 314 (423)
T 3mvd_K 239 TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L---KDIRHIAGGQHHTVILTTDLK 314 (423)
T ss_dssp TTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C---CSEEEEEECSSEEEEEETTCC
T ss_pred cCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C---CCeEEEEcccCeEEEEeCCCc
Confidence 8888999999999999999 589999999999999999965543 34566665 2 589999999999999999999
Q ss_pred EEEEeCCCCCccCCCCCCC-eeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 290 VYSFGSGSNFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 290 vy~wG~n~~gqLG~~~~~~-~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
||+||.|.+||||.++..+ ...|++|..+. . +|++|+||.+|++||+++|+||+||
T Consensus 315 v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~-~v~~ia~G~~hs~alt~~G~v~~wG 371 (423)
T 3mvd_K 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT--E-KIVSVGCGEVCSYAVTIDGKLYSWG 371 (423)
T ss_dssp EEEEECCGGGTTCSSSCCSCEEEEEECTTCC--S-CEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEEEECCCCCCCCCCCccccccCceEeccCC--C-CEEEEEcCCCeEEEEcCCCCEEEEC
Confidence 9999999999999998765 56899988764 2 7999999999999999999999998
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-52 Score=403.24 Aligned_cols=272 Identities=21% Similarity=0.268 Sum_probs=222.3
Q ss_pred ccceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccC
Q 018985 66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGH 144 (348)
Q Consensus 66 ~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~ 144 (348)
.++.+|. ||.|..|||+.....+... .......|.+.+...+|++|+||..|+++| ++|+||+||.|.+||||+
T Consensus 27 ~~g~v~~-wG~n~~GqLG~G~~~~~~~----~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~ 101 (473)
T 3of7_A 27 QPLDIFC-WGTGSMCELGLGPLAKNKE----VKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGR 101 (473)
T ss_dssp SCCEEEE-EEECTTSTTCSCSCGGGGE----EEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCS
T ss_pred CCccEEE-EcCCCCCccCCCCCccccc----ccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCC
Confidence 5789999 9999999998642211100 001111122223345799999999999999 999999999999999999
Q ss_pred CCCCce----------------------eeceEEeec---C---CCCcEEEEEecCCeeEEEEcCCcEEEEEC--CCCCc
Q 018985 145 GPETTQ----------------------CVSFTRINF---P---SAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFC 194 (348)
Q Consensus 145 ~~~~~~----------------------~~~~~~v~~---~---~~~~i~~ia~G~~h~~~lt~~G~vy~wG~--n~~gq 194 (348)
+..... ...|.+++. + ...+|++|+||.+|+++|+++|+||+||. +.+||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~Gq 181 (473)
T 3of7_A 102 DTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGI 181 (473)
T ss_dssp CCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEE
T ss_pred CCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCc
Confidence 875531 335666653 2 34699999999999999999999999998 68999
Q ss_pred ccCCCC-CCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC----CCCceEecCCCCCC
Q 018985 195 CGHRDT-NRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVG 269 (348)
Q Consensus 195 lG~~~~-~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~----~~~p~~v~~~~~~~ 269 (348)
||.... ......|.++..+.+.+|++|+||..|++||+++|+||+||.|.+||||.+.... ...|.++.. .
T Consensus 182 LG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~----~ 257 (473)
T 3of7_A 182 LGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL----R 257 (473)
T ss_dssp EESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC----C
T ss_pred cCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC----c
Confidence 998543 2457889999988888999999999999999999999999999999999986543 456777654 4
Q ss_pred CEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCC----CeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEE
Q 018985 270 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH----DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVS 345 (348)
Q Consensus 270 ~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~----~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~ 345 (348)
+|++|+||.+|++||+++|+||+||.|.+||||.+... ....|++|..+. +.+|++|+||.+|++||+++|+||
T Consensus 258 ~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~--~~~i~~ia~G~~hs~~lt~~G~v~ 335 (473)
T 3of7_A 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPD--NVVIRSIAAGEHHSLILSQDGDLY 335 (473)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCT--TCCEEEEEECSSEEEEEETTSCEE
T ss_pred ceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccC--CccEEEEEeCCCeEEEEeCCCeEE
Confidence 89999999999999999999999999999999998754 346888888663 458999999999999999999999
Q ss_pred EeC
Q 018985 346 LCS 348 (348)
Q Consensus 346 ~wG 348 (348)
+||
T Consensus 336 ~wG 338 (473)
T 3of7_A 336 SCG 338 (473)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-52 Score=405.05 Aligned_cols=315 Identities=20% Similarity=0.218 Sum_probs=235.7
Q ss_pred hCCCCchhhhhh--ccccccccCCCCCCCcccccchhhHHHHH--hccceeeeeecccccceeeecccCCccccccc---
Q 018985 24 SGRLSAVDLAHL--ELTSKTFGGSHGLYPQKFRSLVDLAASQL--CALHSIYAGMSRNVQIELLNRCNGNWKRVLRF--- 96 (348)
Q Consensus 24 ~~~l~~~~l~~l--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~--- 96 (348)
.|||+.++.... ..+|+..+... ....++.++.....+.+ ..++.+|+ ||.|..|||+.........+...
T Consensus 39 ~GqLG~G~~~~~~~~~~P~~~~~~~-~~~~~i~~va~G~~Ht~alt~~G~v~~-wG~n~~GqLG~~~~~~~~~~~~~~~~ 116 (473)
T 3of7_A 39 MCELGLGPLAKNKEVKRPRLNPFLP-RDEAKIISFAVGGMHTLALDEESNVWS-WGCNDVGALGRDTSNAKEQLKDMDAD 116 (473)
T ss_dssp TSTTCSCSCGGGGEEEEEEECTTSC-TTTTCEEEEEECSSEEEEEETTCCEEE-EECCTTSTTCSCCC------------
T ss_pred CCccCCCCCcccccccCcccccccc-cCCCCEEEEEeCCCeEEEEecCCeEEE-eECCCCCCCCCCCccccccccccccc
Confidence 477777765332 23444433110 01123344444443433 35789999 99999999996432211111000
Q ss_pred ---------ccccccccccccC--------CCCcEEEEecCCeEEEE-ECCeEEEEeC--CCCCcccCCCCC-ceeeceE
Q 018985 97 ---------LQSVEHSSDIVET--------SAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPET-TQCVSFT 155 (348)
Q Consensus 97 ---------~~~~~~~p~~~~~--------~~~i~~ia~G~~h~~~l-~~G~vy~wG~--n~~gqlG~~~~~-~~~~~~~ 155 (348)
+......|..++. ..+|++|+||..|+++| ++|+||+||. |.+||||.+... .....|.
T Consensus 117 ~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~ 196 (473)
T 3of7_A 117 DSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPW 196 (473)
T ss_dssp ---------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEE
T ss_pred ccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcE
Confidence 0111334555553 46799999999999999 9999999998 689999985543 2244566
Q ss_pred EeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCC---ceeecEEecccCCCceeEEEecCCeEEEEE
Q 018985 156 RINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR---PIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232 (348)
Q Consensus 156 ~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~---~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt 232 (348)
+++.....+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ....|.++.. .+|++|+||.+|++||+
T Consensus 197 ~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt 273 (473)
T 3of7_A 197 KVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALT 273 (473)
T ss_dssp ECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEE
T ss_pred EccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEe
Confidence 66555555799999999999999999999999999999999886542 2456777643 57999999999999999
Q ss_pred cCCcEEEEeCCCCCCcCCCCCCC----CCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCC--
Q 018985 233 IRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ-- 306 (348)
Q Consensus 233 ~~G~v~~wG~n~~gqLG~~~~~~----~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~-- 306 (348)
++|+||+||.|.+||||.+.... ...|++|..+.+ .+|++|+||.+|++||+++|+||+||.|.+||||.+..
T Consensus 274 ~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~-~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~ 352 (473)
T 3of7_A 274 KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN-VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNL 352 (473)
T ss_dssp TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTT-CCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGC
T ss_pred cCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCC-ccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCcccc
Confidence 99999999999999999987642 367888887765 58999999999999999999999999999999998643
Q ss_pred ------------CCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 307 ------------HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 307 ------------~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
.....|.+|+.+. +|++|+||.+|++||+++|+||+||
T Consensus 353 ~~~~~~~~~~~~~~~~~P~~v~~~~----~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 353 PEYTYKDVHGKARAVPLPTKLNNVP----KFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp CTTCEECTTSCEEEEEEEEECCSSC----CEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ccccccccCCceeeeccCcccCCCC----ceEEEEeCCCeEEEEeCCCcEEEee
Confidence 1234666665432 7999999999999999999999998
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-50 Score=387.99 Aligned_cols=261 Identities=21% Similarity=0.293 Sum_probs=219.4
Q ss_pred ccceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccC
Q 018985 66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGH 144 (348)
Q Consensus 66 ~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~ 144 (348)
.++.+|. ||.|..|||+..... .....|..++.+.+|++|+||..|+++| ++|+||+||.|.+||||+
T Consensus 41 ~~G~v~~-wG~n~~GqLG~g~~~----------~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~ 109 (423)
T 3mvd_K 41 VLGNVLV-CGNGDVGQLGLGEDI----------LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGR 109 (423)
T ss_dssp CCEEEEE-EEECTTSTTCSCSSC----------CEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCS
T ss_pred CCCcEEE-EeCCCCCCCCCCCCC----------ccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCC
Confidence 4689999 999999999853211 1123466777778899999999999999 999999999999999999
Q ss_pred CCCCc-eeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEEC--CCCCcccCCCCCCceeecEEecccCCCceeEE
Q 018985 145 GPETT-QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV 221 (348)
Q Consensus 145 ~~~~~-~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i 221 (348)
+.... ....|.++.++ .+|++|+||.+|+++|+++|+||+||. |.+||||.+.... ...| +..+.+.+|++|
T Consensus 110 ~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~-~~~p--~~~~~~~~i~~v 184 (423)
T 3mvd_K 110 DTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN-KRTP--IDLMEGTVCCSI 184 (423)
T ss_dssp CCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC-EEEE--EESSTTCCEEEE
T ss_pred CCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC-Ccee--eEecCCCcEEEE
Confidence 87654 23456666543 489999999999999999999999999 9999999887643 4444 444667889999
Q ss_pred EecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC-----------CCCCceEecCCCCCCCEEEEEecCceeEEE-EcCCc
Q 018985 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL-----------DRPTPKSIAPLEEVGSVVQIAAGPSYMLAV-TGNGV 289 (348)
Q Consensus 222 ~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~-----------~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~l-t~~g~ 289 (348)
+||.+|++||+++|+||+||.|.+||||.+... ....|.++..+.. .+|++|+||.+|++++ +++|+
T Consensus 185 a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~-~~v~~i~~g~~~~~~~~~~~g~ 263 (423)
T 3mvd_K 185 ASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA-KPFEAIWATNYCTFMRESQTQV 263 (423)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC-CCEEEEEEETTEEEEEETTTCC
T ss_pred ecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC-ccEEEEEECCcEEEEEECCCCe
Confidence 999999999999999999999999999997653 4568888886654 5899999999999999 69999
Q ss_pred EEEEeCCCCCccCCCCCCC--eeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 290 VYSFGSGSNFCLGHGEQHD--ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 290 vy~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
||+||.|.+||||.+.... ...|.++. + .+|++|+||.+|++||+++|+||+||
T Consensus 264 v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~----~~v~~ia~G~~ht~alt~~G~v~~wG 319 (423)
T 3mvd_K 264 IWATGLNNFKQLAHETKGKEFALTPIKTE-L----KDIRHIAGGQHHTVILTTDLKCSVVG 319 (423)
T ss_dssp EEEEEECTTCTTSSCCTTCSEEEEEEEEC-C----CSEEEEEECSSEEEEEETTCCEEEEE
T ss_pred EEEEeCCCCCcCCCCCCCCceeeeeEEcC-C----CCeEEEEcccCeEEEEeCCCcEEEEE
Confidence 9999999999999965433 34666654 2 27999999999999999999999998
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.3e-44 Score=324.00 Aligned_cols=203 Identities=21% Similarity=0.222 Sum_probs=172.1
Q ss_pred cceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEEECCeEEEEeCCCCCcccCCC
Q 018985 67 LHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGP 146 (348)
Q Consensus 67 ~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l~~G~vy~wG~n~~gqlG~~~ 146 (348)
++.+|. ||.|..|||+. |. +...+|++|+||..|+++|++|+||+||.|.+||||.+.
T Consensus 41 ~G~v~~-wG~n~~Gqlg~-------------------p~--~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 41 GGKVLG-WGANLNGQLTM-------------------PA--ATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp TTEEEE-EECCSSSTTSC-------------------CG--GGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCG
T ss_pred CCEEEE-EeCCCCCCCCC-------------------Cc--cCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCc
Confidence 788888 88888888862 11 123479999999999999999999999999999999622
Q ss_pred CCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCC
Q 018985 147 ETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN 226 (348)
Q Consensus 147 ~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~ 226 (348)
. + ..+|++|+||.+|+++|+ +|+||+||.|.+||||.... ...+|++|+||..
T Consensus 99 ~-----------~--~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~-------------~~~~i~~i~~G~~ 151 (282)
T 3qhy_B 99 E-----------A--RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE-------------AQSGVTALDGGVY 151 (282)
T ss_dssp G-----------G--SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG-------------GGSSEEEEEECSS
T ss_pred c-----------c--CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc-------------CCCCeEEEEcccC
Confidence 1 1 248999999999999999 99999999999999984321 1346999999999
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCC
Q 018985 227 FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (348)
Q Consensus 227 hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~ 306 (348)
|+++|+ +|+||+||.|.+||||. |.++. .+|++|+||.+|+++| ++|+||+||.|.+||||.+..
T Consensus 152 ~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~~-----~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~ 216 (282)
T 3qhy_B 152 TALAVK-NGGVIAWGDNYFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE 216 (282)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTSC--------CGGGG-----SSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG
T ss_pred EEEEEE-CCEEEEecCCCCCCCCC--------ceecC-----CCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc
Confidence 999999 89999999999999983 33321 4799999999999999 899999999999999985421
Q ss_pred CCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985 307 HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 307 ~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG 348 (348)
.+ .+|++|+||.+|+++|+ +|+||+||
T Consensus 217 ----------~~----~~v~~i~~G~~h~~al~-~g~v~~wG 243 (282)
T 3qhy_B 217 ----------AL----SGVSAIASGEWYSLALK-NGKVIAWG 243 (282)
T ss_dssp ----------GG----SSCCEEEECSSCEEEEE-TTEEEEES
T ss_pred ----------cC----CCceEEEcCCCEEEEEE-CCEEEEec
Confidence 11 26999999999999999 99999998
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=9.9e-44 Score=323.13 Aligned_cols=186 Identities=23% Similarity=0.234 Sum_probs=159.3
Q ss_pred cccCCCCcEEEEecCCeEEEEECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEE
Q 018985 106 IVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVF 185 (348)
Q Consensus 106 ~~~~~~~i~~ia~G~~h~~~l~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy 185 (348)
+++...+|++|+||..|+++|++|+||+||.|.+||||.+. +...+|++|+||.+|+++|+ +|+||
T Consensus 19 p~~~~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~-------------~~~~~i~~ia~G~~hs~~l~-~G~v~ 84 (282)
T 3qhy_B 19 PAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPA-------------ATQSGVDAIAAGNYHSLALK-DGEVI 84 (282)
T ss_dssp CGGGSSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCG-------------GGGSCCCEEEECSSEEEEEE-TTEEE
T ss_pred CccccCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCc-------------cCCCCEEEEEeCCCEEEEEE-CCEEE
Confidence 34455689999999999999999999999999999999522 12348999999999999996 99999
Q ss_pred EEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCC
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 265 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~ 265 (348)
+||.|.+||||.+ .++ ..+|++|+||.+|+++|+ +|+||+||.|.+||||.. . +..
T Consensus 85 ~wG~n~~Gqlg~P---------~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~--~~~ 140 (282)
T 3qhy_B 85 AWGGNEDGQTTVP---------AEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------A--EAQ 140 (282)
T ss_dssp EEECCTTSTTCCC---------GGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------G--GGG
T ss_pred EeeCCCCCCCCCC---------ccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------c--cCC
Confidence 9999999999952 222 237999999999999999 999999999999999842 1 111
Q ss_pred CCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEE
Q 018985 266 EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVS 345 (348)
Q Consensus 266 ~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~ 345 (348)
.+|++|+||.+|+++++ +|+||+||.|.+||||.+ ..+ ..+|++|+||.+|+++| ++|+||
T Consensus 141 ---~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p--------~~~------~~~v~~i~~G~~hs~al-~~G~v~ 201 (282)
T 3qhy_B 141 ---SGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP--------AEA------QSGVDDVAGGIFHSLAL-KDGKVI 201 (282)
T ss_dssp ---SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC--------GGG------GSSEEEEEECSSEEEEE-ETTEEE
T ss_pred ---CCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc--------eec------CCCeEEEEecCCEEEEE-ECCeEE
Confidence 47999999999999999 899999999999999842 222 23799999999999999 899999
Q ss_pred EeC
Q 018985 346 LCS 348 (348)
Q Consensus 346 ~wG 348 (348)
+||
T Consensus 202 ~wG 204 (282)
T 3qhy_B 202 AWG 204 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.64 E-value=0.039 Score=51.59 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=124.9
Q ss_pred cccccccCChHHHHHHHhhCCCCchhhhhhccccccccCCCCCCCcccccchhhHHHHHhccceee--eeecccccceee
Q 018985 6 RLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIY--AGMSRNVQIELL 83 (348)
Q Consensus 6 ~~~~~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~n~~g~l~ 83 (348)
..+.+..||.+++.+|| .+|++.||..+..+|+.+..-. .....| ...|...... .+..........
T Consensus 15 ~~d~~~~lp~e~~~~i~--~~l~~~~l~~~~~v~~~~~~~~--~~~~~w-------~~~~~~~~~~~~~~~~~~~~~~~~ 83 (445)
T 2ovr_B 15 QRDFISLLPKELALYVL--SFLEPKDLLQAAQTCRYWRILA--EDNLLW-------REKCKEEGIDEPLHIKRRKVIKPG 83 (445)
T ss_dssp CCSTTTSSCHHHHHHHH--TTSCHHHHHHHTTSCHHHHHHH--TCSHHH-------HHHHTTTTCCSCCCCCC--CCSSC
T ss_pred cCChhHHCCHHHHHHHH--HhCCHHHHHHHHHHhHHHHhhc--CchhHh-------hhheeecccccccccccceecCCC
Confidence 44567899999999999 9999999999999998775311 000111 1122110000 000000000000
Q ss_pred ecccCCcccccccc--------cccccccccccCCCC--cEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceee
Q 018985 84 NRCNGNWKRVLRFL--------QSVEHSSDIVETSAG--NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCV 152 (348)
Q Consensus 84 ~~~~~~~~~~~~~~--------~~~~~~p~~~~~~~~--i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~ 152 (348)
.....|+...... ......+..+..... +..++.-....+.- .||.|..|-....-.+
T Consensus 84 -~~~~~wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~---------- 152 (445)
T 2ovr_B 84 -FIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL---------- 152 (445)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE----------
T ss_pred -ccCCcHHHHHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEE----------
Confidence 0111222211000 000001112222221 34455544444444 8899999875421110
Q ss_pred ceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEE
Q 018985 153 SFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232 (348)
Q Consensus 153 ~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt 232 (348)
..+. .....|..++......+.-..||.|+.|-....- ....+. .....|..++......+.-+
T Consensus 153 --~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~~~~~~~~l~s~s 216 (445)
T 2ovr_B 153 --RTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE------------CIHTLY-GHTSTVRCMHLHEKRVVSGS 216 (445)
T ss_dssp --EECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE------------EEEEEC-CCSSCEEEEEEETTEEEEEE
T ss_pred --EEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCc------------EEEEEC-CCCCcEEEEEecCCEEEEEe
Confidence 1111 1223677777767777777889999999654310 011111 12335777777777777778
Q ss_pred cCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeC
Q 018985 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 295 (348)
Q Consensus 233 ~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~ 295 (348)
.||.|..|-..... ....+.... ..|..++......++-..+|.|+.|-.
T Consensus 217 ~dg~i~~wd~~~~~-----------~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 217 RDATLRVWDIETGQ-----------CLHVLMGHV--AAVRCVQYDGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp TTSEEEEEESSSCC-----------EEEEEECCS--SCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred CCCEEEEEECCCCc-----------EEEEEcCCc--ccEEEEEECCCEEEEEcCCCEEEEEEC
Confidence 89999999654311 011122211 367777776677777788999999964
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.45 E-value=0.074 Score=49.61 Aligned_cols=187 Identities=8% Similarity=0.045 Sum_probs=111.2
Q ss_pred CCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEEC
Q 018985 111 AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 111 ~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~ 189 (348)
..|..++......+.- .||.|..|-....-. ...+ ......|..++......+.-+.||.|..|-.
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~------------~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEM------------LNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCCE------------EEEE-CCCCSCEEEEECCTTEEEEEETTSCEEEEEC
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCcE------------EEEE-cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeC
Confidence 3477777644433333 788888886532110 1111 1123368888887777777789999999965
Q ss_pred CCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCC
Q 018985 190 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG 269 (348)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~ 269 (348)
..... . .+.....-....|..++....+.+.-+.||.|..|-..... ....+.... .
T Consensus 241 ~~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~--~ 297 (435)
T 1p22_A 241 ASPTD---------I-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNGHK--R 297 (435)
T ss_dssp SSSSC---------C-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEECCS--S
T ss_pred CCCCC---------c-eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcCCC--C
Confidence 43110 1 11111111234577777777777777889999999654311 111222221 3
Q ss_pred CEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEe
Q 018985 270 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 270 ~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
.|..++......++-..+|.|..|-...... ...+.. ....|..++....+.+.-..||.|..|
T Consensus 298 ~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~~---h~~~v~~~~~~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 298 GIACLQYRDRLVVSGSSDNTIRLWDIECGAC-----------LRVLEG---HEELVRCIRFDNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECC---CSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCCCCE-----------EEEEeC---CcCcEEEEEecCCEEEEEeCCCcEEEE
Confidence 6778877777777778899999997543111 111211 223577777766666666789999888
No 15
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.61 E-value=0.0042 Score=53.47 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=65.8
Q ss_pred CcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeC
Q 018985 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 163 ~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~ 242 (348)
..|..|+-...|..++--+++++.+|+++.|||-..... .+..++.+|..+++-+..-..+-.||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecC
Confidence 367788888999999999999999999999999876543 257899999999999999999999998
Q ss_pred CCCCCc---CCCCCCCCCCce
Q 018985 243 NTHGQL---GHGDTLDRPTPK 260 (348)
Q Consensus 243 n~~gqL---G~~~~~~~~~p~ 260 (348)
.-...| |.+......+|+
T Consensus 375 SPDNSLLwnGr~t~~~~~~~~ 395 (400)
T 4gbf_A 375 SPDNSLLWNGRGTRVKHIEPT 395 (400)
T ss_dssp CTTSTTCCTTCCSBCCCCCCC
T ss_pred CCCcceeecCccceeeeccCC
Confidence 654443 444444444443
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.43 E-value=0.59 Score=43.48 Aligned_cols=197 Identities=8% Similarity=-0.020 Sum_probs=103.8
Q ss_pred CCcEEEEecCCeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec----CCeeEEEEcCCcE
Q 018985 111 AGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQV 184 (348)
Q Consensus 111 ~~i~~ia~G~~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G----~~h~~~lt~~G~v 184 (348)
..|..++......++. .||.|..|-..... ....+. .....|..++.. ....+.-+.||.|
T Consensus 163 ~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGC------------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEEECSTTEEEEEETTSCEEEEETTTTE------------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred cCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc------------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 3477777654444444 78888888653210 011111 122356555543 2455666789999
Q ss_pred EEEECCCCCcccCCCCCC--------ceeecEEeccc--CCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC
Q 018985 185 FTCGDNSSFCCGHRDTNR--------PIFRPRLVEAL--KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 254 (348)
Q Consensus 185 y~wG~n~~gqlG~~~~~~--------~~~~p~~v~~~--~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~ 254 (348)
..|-.............. ....|..+..+ ....|..++......+.-..||.|..|-......
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------- 302 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC------- 302 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-------
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-------
Confidence 999866533221110000 00001011111 2335777777777777778899999996532110
Q ss_pred CCCCceEecCCCCCCCEEEEEecCc--eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecC
Q 018985 255 DRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD 332 (348)
Q Consensus 255 ~~~~p~~v~~~~~~~~v~~Ia~G~~--~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~ 332 (348)
...+.... ..|..++...+ ..+.-..||.|+.|-.... + .+..+......|..++...
T Consensus 303 ----~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~-------------~~~~~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 303 ----LYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E-------------LMYTLQGHTALVGLLRLSD 362 (464)
T ss_dssp ----EEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E-------------EEEEECCCSSCEEEEEECS
T ss_pred ----EEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c-------------EEEEEeCCCCcEEEEEEcC
Confidence 11122211 35777766543 4555667899999965331 1 1111211223577777766
Q ss_pred ceeEEEecCCcEEEe
Q 018985 333 EHVVALDSSGYVSLC 347 (348)
Q Consensus 333 ~ht~al~~~G~v~~w 347 (348)
.+.+.-..||.|..|
T Consensus 363 ~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 363 KFLVSAAADGSIRGW 377 (464)
T ss_dssp SEEEEEETTSEEEEE
T ss_pred CEEEEEeCCCcEEEE
Confidence 666666788888877
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.32 E-value=0.0054 Score=52.77 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=59.2
Q ss_pred CCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEEC
Q 018985 111 AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 111 ~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~ 189 (348)
..|.+|+--..|..++ -++++|.+|+++.||+-.....- ...++++|.++++-+..-..+-.||+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag--------------Pfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG--------------PYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC--------------CEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCcc--------------hHHhHhccCCeEEEEeceeeEEEecC
Confidence 4588888888999999 99999999999999987654332 67789999999999999999999998
Q ss_pred CCCCcc
Q 018985 190 NSSFCC 195 (348)
Q Consensus 190 n~~gql 195 (348)
.....|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 665444
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.89 E-value=1.7 Score=43.07 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=51.9
Q ss_pred eEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCC--cEEEEEe---cCCeeEEEEcCCcEEEEECCCCCcc
Q 018985 122 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSA---SENHAAFVLQSGQVFTCGDNSSFCC 195 (348)
Q Consensus 122 h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~--~i~~ia~---G~~h~~~lt~~G~vy~wG~n~~gql 195 (348)
|..++ .+|+||.+|-......|...... ............ .+...-. ...+++++..+|+||.+|-....
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~--~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-- 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGI--TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-- 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSE--EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT--
T ss_pred eEEEEecCCEEEEEecccccccccCCCCe--EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC--
Confidence 44444 49999999865433333211111 111111111111 2222322 22334677789999999964321
Q ss_pred cCCCCCCceeec-----EEecccCCCceeEEEecCCeEEEEEcCCcEEEEeC
Q 018985 196 GHRDTNRPIFRP-----RLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 196 G~~~~~~~~~~p-----~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~ 242 (348)
....+.| +++..+.. .-..|++++..+|+||++|-
T Consensus 266 -----~v~~yd~~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 266 -----KTSLYDSSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp -----CEEEEEGGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECC
T ss_pred -----ceEEecCcCCceeECCCCCc-------cccccceEEecCCeEEEEeC
Confidence 1112222 11211111 23468888777999999996
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.82 E-value=0.79 Score=45.93 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=14.7
Q ss_pred CceeEEEEcCCcEEEEeC
Q 018985 278 PSYMLAVTGNGVVYSFGS 295 (348)
Q Consensus 278 ~~~s~~lt~~g~vy~wG~ 295 (348)
..|++++..++++|+.|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 567888887789999984
No 20
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=93.07 E-value=0.053 Score=34.78 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.0
Q ss_pred cccccCChHHHHHHHhhCCCCchhhhhhccccccccC
Q 018985 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (348)
Q Consensus 8 ~~~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~~ 44 (348)
..+.+||.+++.+|| .+|+..|+..+..+|+.+..
T Consensus 7 ~~~~~LP~eil~~I~--~~L~~~dl~~~~~Vck~w~~ 41 (53)
T 1fs1_A 7 VSWDSLPDELLLGIF--SCLCLPELLKVSGVCKRWYR 41 (53)
T ss_dssp --CCSSCHHHHHHHH--TTSCGGGHHHHHTTCHHHHH
T ss_pred CCHHHCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHH
Confidence 357799999999999 89999999999999988763
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.36 E-value=8.5 Score=35.24 Aligned_cols=185 Identities=9% Similarity=0.024 Sum_probs=111.6
Q ss_pred CcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECC
Q 018985 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (348)
Q Consensus 112 ~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n 190 (348)
.|..++......+.- .||.|..|-.... + ....-......|..++......+.-+.||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~------------~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E------------CKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC-C------------EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC-e------------EEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 477777766666555 8899999964321 0 1111111233788888866666666889999999764
Q ss_pred CCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCc-eEecCCCCCC
Q 018985 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP-KSIAPLEEVG 269 (348)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p-~~v~~~~~~~ 269 (348)
..-. . ..+. .....|..++......+.-+.||.|..|-...... ..+ ..+.... .
T Consensus 202 ~~~~---------~---~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~--~ 257 (435)
T 1p22_A 202 TGEM---------L---NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHR--A 257 (435)
T ss_dssp SCCE---------E---EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCS--S
T ss_pred CCcE---------E---EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCC--C
Confidence 3110 0 1111 12345788887777777778899999996543111 111 1122221 4
Q ss_pred CEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEe
Q 018985 270 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 270 ~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
.|..++....+.++-..+|.|..|-..... ....+.. ....|..++......++-..||.|..|
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~---~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNG---HKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEEC---CSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcC---CCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 688888877777778889999999654311 1111221 223577777766666777788888887
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=90.15 E-value=11 Score=34.50 Aligned_cols=147 Identities=7% Similarity=-0.034 Sum_probs=84.5
Q ss_pred cEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCC
Q 018985 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (348)
Q Consensus 164 ~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n 243 (348)
.|..++......+.-+.+|.|..|-.... . ....+. .....|..++....+.+.-+.||.|..|-..
T Consensus 241 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~-~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETE-----------T-CLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp CEEEEEECSSCEEEEETTSCEEEEEGGGT-----------E-EEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETT
T ss_pred cEEEEEECCCEEEEEcCCCEEEEEECCCC-----------c-EeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECC
Confidence 55566655555555667777777753221 0 001111 1223577777766777777889999999654
Q ss_pred CCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCC
Q 018985 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 323 (348)
Q Consensus 244 ~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~ 323 (348)
... ....+.... ..+..++......++-..+|.|+.|-..... ....+........
T Consensus 308 ~~~-----------~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~ 363 (445)
T 2ovr_B 308 TGN-----------CIHTLTGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKTGQ-----------CLQTLQGPNKHQS 363 (445)
T ss_dssp TCC-----------EEEEECCCC--SCEEEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEEECSTTSCSS
T ss_pred CCC-----------EEEEEcCCc--ccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCCCCCC
Confidence 311 111122211 3577777777777777889999999653311 1122222111223
Q ss_pred cEEEEEecCceeEEEecCCcEEEe
Q 018985 324 HVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 324 ~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
.|..++....+.++-..||.|..|
T Consensus 364 ~v~~~~~~~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 364 AVTCLQFNKNFVITSSDDGTVKLW 387 (445)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEE
T ss_pred CEEEEEECCCEEEEEeCCCeEEEE
Confidence 577777766666666788888887
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.52 E-value=5.3 Score=39.84 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCeeEEEEc-CCcEEEEECCCCCcccCCCCCCceee-----cEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeC
Q 018985 172 ENHAAFVLQ-SGQVFTCGDNSSFCCGHRDTNRPIFR-----PRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 172 ~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~~-----p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~ 242 (348)
..|++++.. +|+||.+|-.....--..+. ..+. .+.+..+. ..-..|++++..+|+||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv--~~yd~~t~~W~~~~~~p-------~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDN--WIFDMKTREWSMIKSLS-------HTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCC--EEEETTTTEEEECCCCS-------BCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccE--EEEeCCCCcEEECCCCC-------CCcccceEEEEcCCEEEEECC
Confidence 358888776 89999998433211001110 1111 11221111 134568877756899999984
No 24
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.15 E-value=3.7 Score=35.84 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.3
Q ss_pred CeEEEEECCeEEEEeCCC
Q 018985 121 YHTLLISNSSVFSCGSSL 138 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n~ 138 (348)
.|++++-+++||.+|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 466655889999999643
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.18 E-value=16 Score=32.57 Aligned_cols=191 Identities=10% Similarity=-0.042 Sum_probs=88.7
Q ss_pred CCCcEEEEecCCeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC--eeEEEEcCCcEE
Q 018985 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVF 185 (348)
Q Consensus 110 ~~~i~~ia~G~~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~--h~~~lt~~G~vy 185 (348)
...|..++-.....++. .+|.|..|-......+- ............|..|+...+ ..+.-..||.|.
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLL---------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC--------C---------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeE---------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 34477776544444444 77888877432111000 000011112235777766544 333346789999
Q ss_pred EEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEe
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v 262 (348)
.|-.... .. ...+.. ....|..|+.- ....+....||.|..|-... ++. ...+
T Consensus 165 iwd~~~~-----------~~-~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~----------~~~~ 220 (357)
T 4g56_B 165 VWDLSQK-----------AV-LKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKP----------ATRI 220 (357)
T ss_dssp EEETTTT-----------EE-EEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSC----------BCBC
T ss_pred EEECCCC-----------cE-EEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cce----------eeee
Confidence 9964431 00 011111 12346666652 23455567789999994322 110 0111
Q ss_pred cCCCCCCCEEEEEecC--ceeEE-EEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecC---ceeE
Q 018985 263 APLEEVGSVVQIAAGP--SYMLA-VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVV 336 (348)
Q Consensus 263 ~~~~~~~~v~~Ia~G~--~~s~~-lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~---~ht~ 336 (348)
........+..|+... .+.++ -..++.|+.|-.... ++ ...+.. ....|..++... ...+
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~----------~~~~~~---~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DS----------AQTSAV---HSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GG----------CEEECC---CSSCEEEEEECSSSSCCEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCC-cE----------eEEEec---cceeEEEEEEcCCCCCEEE
Confidence 1111113567777642 23333 367889999964321 11 111111 122466666532 2223
Q ss_pred EEecCCcEEEe
Q 018985 337 ALDSSGYVSLC 347 (348)
Q Consensus 337 al~~~G~v~~w 347 (348)
.-..||.|+.|
T Consensus 287 sgs~D~~i~iw 297 (357)
T 4g56_B 287 SISEDCTVAVL 297 (357)
T ss_dssp EEETTSCEEEE
T ss_pred EEeCCCEEEEE
Confidence 34567888887
No 26
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=85.35 E-value=8 Score=33.87 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.8
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 018985 225 LNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 225 ~~hs~~lt~~G~v~~wG~ 242 (348)
..|+++. .+++||++|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566666 5889999984
No 27
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.21 E-value=31 Score=30.50 Aligned_cols=162 Identities=10% Similarity=0.129 Sum_probs=86.5
Q ss_pred EEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec-----CCeEEEEEcCCcEEEEeC
Q 018985 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 168 ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~hs~~lt~~G~v~~wG~ 242 (348)
++.+.++.+++|+.|++|..-...-...+...... .....+..-.+.+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 45566789999999999998765433322221111 11112222345667777654 356888899999998876
Q ss_pred CCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEe--cCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeecccc
Q 018985 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (348)
Q Consensus 243 n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~--G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~ 320 (348)
.++-.. ...-...-.+.+...++.+.. +..+.+++|++|.+.-+-..+.-..|..... .+...+.
T Consensus 132 ~~~~~~-------r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~- 198 (312)
T 1suu_A 132 TDFKAV-------KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK- 198 (312)
T ss_dssp GGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC-
T ss_pred HHhhcc-------CCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC-
Confidence 554211 011122223333345666544 4667889999999988876543333322111 1111111
Q ss_pred CCCcEEEEEe--cCceeEEEecCCcE
Q 018985 321 KGIHVVRVSA--GDEHVVALDSSGYV 344 (348)
Q Consensus 321 ~~~~v~~i~~--G~~ht~al~~~G~v 344 (348)
++..|+.+.. ...+.++++++|..
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~ 224 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYG 224 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEE
T ss_pred CCCEEEEEEEECCCCeEEEEECCCce
Confidence 1234555543 34456677777764
No 28
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=79.97 E-value=33 Score=30.71 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=81.6
Q ss_pred EEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcCCcEEEEeC
Q 018985 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 165 i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~ 242 (348)
+..++-...+.++...+|.|+.|-....- . ...+.......|..++-. ..+.++-+.+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~----------~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS----------V--SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC----------E--EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc----------E--eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44466556778888999999999764311 1 111111123345666543 345555567899999965
Q ss_pred CCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCC
Q 018985 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (348)
Q Consensus 243 n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~ 322 (348)
.... ....+.... ..|..++......+.-..+|.|+.|-.....+ ....+.. ..
T Consensus 164 ~~~~-----------~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~---~~ 217 (401)
T 4aez_A 164 ESQT-----------KLRTMAGHQ--ARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG---HS 217 (401)
T ss_dssp TTCC-----------EEEEECCCS--SCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC---CS
T ss_pred cCCe-----------EEEEecCCC--CceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC---CC
Confidence 3311 112222221 46888888767777778899999997643211 1111111 12
Q ss_pred CcEEEEEecC--ceeEEEecCCcEEEe
Q 018985 323 IHVVRVSAGD--EHVVALDSSGYVSLC 347 (348)
Q Consensus 323 ~~v~~i~~G~--~ht~al~~~G~v~~w 347 (348)
..|..++.-. ...+.-..||.|+.|
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 2466665542 334444567888887
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=79.72 E-value=27 Score=29.47 Aligned_cols=181 Identities=9% Similarity=0.019 Sum_probs=97.3
Q ss_pred CCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEe---cCCeeEEEEcCCcEEE
Q 018985 111 AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA---SENHAAFVLQSGQVFT 186 (348)
Q Consensus 111 ~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~---G~~h~~~lt~~G~vy~ 186 (348)
..|..++.-....+.- .+|.|+.|-. .. ....+. .....|..++. .....+..+.+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~-----------~~---~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE-----------GS---LVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET-----------TE---EEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC-----------Cc---EEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4477777755555555 8999999951 00 011111 12235555544 4556667788899999
Q ss_pred EECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC-CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCC
Q 018985 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 265 (348)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~ 265 (348)
|-.. . ....+.......|..++.-. ...++-..+|.|+.|-..... ....+...
T Consensus 170 ~d~~-------------~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----------~~~~~~~~ 224 (313)
T 3odt_A 170 WQND-------------K-VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-----------VLRTYEGH 224 (313)
T ss_dssp EETT-------------E-EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEECC
T ss_pred EecC-------------c-eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-----------hhhhhhcC
Confidence 9511 0 11111111233455554422 225556778999999654311 11122222
Q ss_pred CCCCCEEEEEecCc-eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc-eeEEEecCCc
Q 018985 266 EEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-HVVALDSSGY 343 (348)
Q Consensus 266 ~~~~~v~~Ia~G~~-~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~-ht~al~~~G~ 343 (348)
. ..|..++...+ ..++-..+|.|+.|-.... .....+.. ....|..++.-.+ ..++-..||.
T Consensus 225 ~--~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~dg~ 288 (313)
T 3odt_A 225 E--SFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-----------SLKQVITL---PAISIWSVDCMSNGDIIVGSSDNL 288 (313)
T ss_dssp S--SCEEEEEECTTSCEEEEETTSEEEEECTTTC-----------CEEEEEEC---SSSCEEEEEECTTSCEEEEETTSC
T ss_pred C--ceEEEEEEecCCCEEEEecCCEEEEEECCCC-----------ceeEEEec---cCceEEEEEEccCCCEEEEeCCCc
Confidence 1 36777776544 4556678899999964331 11112221 2235777765433 3555678999
Q ss_pred EEEe
Q 018985 344 VSLC 347 (348)
Q Consensus 344 v~~w 347 (348)
|+.|
T Consensus 289 i~iw 292 (313)
T 3odt_A 289 VRIF 292 (313)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
No 30
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.27 E-value=17 Score=31.55 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.5
Q ss_pred CeEEEEECCeEEEEeCC
Q 018985 121 YHTLLISNSSVFSCGSS 137 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n 137 (348)
.|++++.+++||.+|-.
T Consensus 63 ~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 63 GLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEECCC
Confidence 45555588999999864
No 31
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.94 E-value=32 Score=29.86 Aligned_cols=201 Identities=13% Similarity=0.072 Sum_probs=107.9
Q ss_pred cEEEEecCC--eEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec---CCeeEEEEcCCcEEE
Q 018985 113 NMQITTGRY--HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVFT 186 (348)
Q Consensus 113 i~~ia~G~~--h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G---~~h~~~lt~~G~vy~ 186 (348)
+..+..... +.+++ ++|++|.--....-. .. ... + +...++|+.+.+- ....+++|++|.+.-
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~------~~-~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ------GS-KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHHHHT------SE-ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEE
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc------Cc-ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEE
Confidence 555544443 35556 999999754322100 00 001 3 5556688888761 246888999999988
Q ss_pred EECCCCCcccCCCCCCceeecEE-ecccCCCceeEEEe--cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEec
Q 018985 187 CGDNSSFCCGHRDTNRPIFRPRL-VEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 263 (348)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~-v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~ 263 (348)
.-...+-+-. .... +..-++..++.+.. +..+.+++|++|++|.+-..+.-.+|.+.... +.-
T Consensus 95 ~~l~~~~~~~---------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv-----~~i 160 (276)
T 3no0_A 95 IPLAEFEYKA---------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV-----QGI 160 (276)
T ss_dssp EEGGGTTTCS---------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE-----ECC
T ss_pred EEHHHhhhhc---------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE-----EEE
Confidence 7755542100 0111 11112334444433 45568899999999999876655554433221 112
Q ss_pred CCCCCCCEEEEEec--CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEE--ecCceeEEEe
Q 018985 264 PLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS--AGDEHVVALD 339 (348)
Q Consensus 264 ~~~~~~~v~~Ia~G--~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~--~G~~ht~al~ 339 (348)
.+.+..+|+.+... ..+.+++|++|.+.-.-...+-..+.+....... . ++..++.+. .+.+..++++
T Consensus 161 ~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-------~-~~~~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 161 KLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-------G-TKDTLVDLIPIKEEVELLITT 232 (276)
T ss_dssp CCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-------C-SSSCEEEEEEESSEEEEEEEE
T ss_pred ccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-------c-CCCcEEEEEEeCCCCEEEEEc
Confidence 23333577776654 3467888999987766544332222211110000 1 122344332 3556788888
Q ss_pred cCCcEEE
Q 018985 340 SSGYVSL 346 (348)
Q Consensus 340 ~~G~v~~ 346 (348)
++|++.-
T Consensus 233 ~~G~~ir 239 (276)
T 3no0_A 233 KNGKAFY 239 (276)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 8888753
No 32
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=78.55 E-value=22 Score=30.54 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.5
Q ss_pred CeEEEEECCeEEEEeCC
Q 018985 121 YHTLLISNSSVFSCGSS 137 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n 137 (348)
.|++++.+++||.+|-.
T Consensus 54 ~~~~~~~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVYMAGLVFAVGGF 70 (302)
T ss_dssp SCEEEEETTEEEEESCB
T ss_pred cceEEEECCEEEEEeCc
Confidence 45555588999999853
No 33
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=78.41 E-value=20 Score=27.86 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=61.7
Q ss_pred CCCceeEEEecC-CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEec-CceeEEEEcCCcEE
Q 018985 214 KGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVY 291 (348)
Q Consensus 214 ~~~~i~~i~~G~-~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G-~~~s~~lt~~g~vy 291 (348)
++.+..++-|-. .+-+-+..||.|=.-.... +.........+. ..++.|.|- ..+-+++..+|+||
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~-------~~~s~lei~sv~-----~G~V~L~g~~sg~yL~mn~~G~l~ 95 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS-------DTHIQFQISPEG-----NGEVLLKSTETGQYLRINPDGTVD 95 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT-------CGGGCEEEEEEE-----TTEEEEEETTTTEEEEECTTSBEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC-------CCceEEEEEEcc-----CCEEEEEEecCCEEEeECCCCCEe
Confidence 345678888876 5677788899988654321 011111122221 247788775 57889999999999
Q ss_pred EEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEE-ecCceeEEEecCCcEEE
Q 018985 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS-AGDEHVVALDSSGYVSL 346 (348)
Q Consensus 292 ~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~-~G~~ht~al~~~G~v~~ 346 (348)
.--. ..+.....++..... .++.+. .-....+|++++|++|.
T Consensus 96 Gs~~----------~t~ecsflEi~~en~---y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 96 GTRD----------RSDTHIQFQISPEGN---GEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp EECC----------TTCGGGCEEEEECST---TCEEEEETTTCCEEEECTTSBEEE
T ss_pred eccc----------CCCCceEEEEEeecC---cEEEEEEecCCEEEEECCCcCCcc
Confidence 6422 111222233322221 222333 22335899999999986
No 34
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.72 E-value=41 Score=30.53 Aligned_cols=207 Identities=7% Similarity=0.000 Sum_probs=100.7
Q ss_pred cEEEEecCC---eEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC---CeeEEEEcCCcEE
Q 018985 113 NMQITTGRY---HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQVF 185 (348)
Q Consensus 113 i~~ia~G~~---h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~---~h~~~lt~~G~vy 185 (348)
|..++-... +.+.- .+|.|..|-.+....... ...+..........|..|+... ...+....+|.|+
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 555554332 33344 789999998765321110 1111111112233677777643 3444556899999
Q ss_pred EEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC--C-eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEe
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--N-FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~-hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v 262 (348)
.|-....... ... ..+. .....|..|+... . ..+.-..+|.|..|-....++ ....+
T Consensus 258 i~d~~~~~~~------~~~---~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~ 317 (430)
T 2xyi_A 258 IWDTRNNNTS------KPS---HTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSF 317 (430)
T ss_dssp EEETTCSCSS------SCS---EEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEE
T ss_pred EEECCCCCCC------cce---eEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEe
Confidence 9976542100 000 1111 1233466666543 2 233446789999997654221 11122
Q ss_pred cCCCCCCCEEEEEecCce---eEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc---eeE
Q 018985 263 APLEEVGSVVQIAAGPSY---MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVV 336 (348)
Q Consensus 263 ~~~~~~~~v~~Ia~G~~~---s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~---ht~ 336 (348)
.... ..|..|+...+. .+.-..+|.|..|-....+..-.........|..+.........|..++...+ ..+
T Consensus 318 ~~h~--~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 318 ESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp ECCS--SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred ecCC--CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 2221 367788775433 34445788999997654221100000000012222222212235777765543 344
Q ss_pred EEecCCcEEEe
Q 018985 337 ALDSSGYVSLC 347 (348)
Q Consensus 337 al~~~G~v~~w 347 (348)
....||.|..|
T Consensus 396 s~s~dg~i~iw 406 (430)
T 2xyi_A 396 SVSEDNIMQVW 406 (430)
T ss_dssp EEETTSEEEEE
T ss_pred EEECCCCEEEe
Confidence 45678888887
No 35
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.61 E-value=44 Score=29.78 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=89.8
Q ss_pred EEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC-----CeEEEEEcCCcEEEEeC
Q 018985 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 168 ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~ 242 (348)
.+...++.+++|+.|++|..-...-...+..... .+....+....+.+|+.+.... ...+++|++|.+.-.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G--~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG--QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC--EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC--EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 3455667888999999999876554333222111 1111223333567788877654 46788899998887664
Q ss_pred CCCCCcCCCCCCCCCCceEecCCCCCCCEEEE--EecCceeEEEEcCCcEEEEeCC--CCCccCCCCCCCeeeeEEeecc
Q 018985 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQHDELQPRAIQTF 318 (348)
Q Consensus 243 n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~I--a~G~~~s~~lt~~g~vy~wG~n--~~gqLG~~~~~~~~~P~~v~~~ 318 (348)
.++-... . .-...-.+.+...++.+ +.+.++.+++|++|++|.+--. .--.+|..... .++..+
T Consensus 127 ~~~~~~~------r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L 194 (327)
T 3uc1_A 127 TDFDSNR------S-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRF 194 (327)
T ss_dssp GGGCCCC------S-SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCC
T ss_pred HHhhccc------c-CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecC
Confidence 4432110 0 11111122222345444 3466778999999999998766 33333332211 111122
Q ss_pred ccCCCcEEEEEecC--ceeEEEecCCcE
Q 018985 319 RRKGIHVVRVSAGD--EHVVALDSSGYV 344 (348)
Q Consensus 319 ~~~~~~v~~i~~G~--~ht~al~~~G~v 344 (348)
. ++.+|+.+..-. .+.+++|++|.+
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~ 221 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYA 221 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEE
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcE
Confidence 2 344677776543 356777788765
No 36
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=75.52 E-value=84 Score=32.97 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=55.2
Q ss_pred ceeEEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecC--CCCCCCEEEEEecCceeEEEEcCCcEEE
Q 018985 217 PCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP--LEEVGSVVQIAAGPSYMLAVTGNGVVYS 292 (348)
Q Consensus 217 ~i~~i~~G~--~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~--~~~~~~v~~Ia~G~~~s~~lt~~g~vy~ 292 (348)
.|..++... ...+.-+.||.|+.|-......+. ...|..... ......|..++...+...+++.+|.|..
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~v 1202 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKW 1202 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECCCeEEE
Confidence 355554432 334444668888888654322111 111111110 0111357777777666666666789999
Q ss_pred EeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEE--EEecCceeEEEecCCcEEEe
Q 018985 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 293 wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~--i~~G~~ht~al~~~G~v~~w 347 (348)
|-......+..- .. ....|.. ++..+...++...+|.|+.|
T Consensus 1203 wd~~~g~~~~~~-----------~~---~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1203 WNVATGDSSQTF-----------YT---NGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp BCSSSCBCCCCC-----------CC---SSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred EECCCCceeeee-----------ec---cCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence 975443222110 00 0112322 33334456667789999998
No 37
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=75.16 E-value=0.66 Score=41.20 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=29.8
Q ss_pred ccccCChHHHHHHHhhCCCCchhhhhhcccccccc
Q 018985 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFG 43 (348)
Q Consensus 9 ~~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~ 43 (348)
.+++||.|++++|| .+|++.|+..+..||+.++
T Consensus 4 ~l~~LP~ei~l~Il--sfL~p~DL~~l~~vcr~Wr 36 (312)
T 3l2o_B 4 TLTRLPIDVQLYIL--SFLSPHDLCQLGSTNHYWN 36 (312)
T ss_dssp HHHHSCHHHHHHHH--HTSCHHHHHHHHTTCHHHH
T ss_pred hhHhCCHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Confidence 36799999999999 8999999999999998665
No 38
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=75.05 E-value=11 Score=37.15 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=30.6
Q ss_pred eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEE----ecCceeEEEecCCcEEEeC
Q 018985 280 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS----AGDEHVVALDSSGYVSLCS 348 (348)
Q Consensus 280 ~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~----~G~~ht~al~~~G~v~~wG 348 (348)
+++++..+|+||++|-.... .. .+-.+ .......+. .-..|+++...+|+||++|
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~--------~v----~~yd~--~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~G 304 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK--------KT----SLYDS--SSDSWIPGPDMQVARGYQSSATMSDGRVFTIG 304 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT--------CE----EEEEG--GGTEEEECCCCSSCCSSCEEEECTTSCEEEEC
T ss_pred ccccCCCCCCEEEeCCCCCC--------ce----EEecC--cCCceeECCCCCccccccceEEecCCeEEEEe
Confidence 45677789999999953221 10 11011 011222221 2245777777799999987
No 39
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=74.18 E-value=41 Score=28.74 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.2
Q ss_pred CeEEEEECCeEEEEeCCC
Q 018985 121 YHTLLISNSSVFSCGSSL 138 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n~ 138 (348)
.|++++.+++||.+|-..
T Consensus 55 ~~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred cccEEEECCEEEEEcCCC
Confidence 466655789999999643
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=73.65 E-value=43 Score=28.81 Aligned_cols=196 Identities=10% Similarity=0.060 Sum_probs=92.9
Q ss_pred CcEEEEecCCe-EEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC--CeeEEEEcCCcEEE
Q 018985 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFT 186 (348)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~--~h~~~lt~~G~vy~ 186 (348)
.|..++..... .++. .+|.|+.|-...... ...+. .....|..++... ...+....||.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER------------LGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCE------------EEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh------------hhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 36666654432 3333 688999996432110 11111 1223676766653 35555678899999
Q ss_pred EECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcC-----CcEEEEeCCCCCCcCCCCCCCCCCc
Q 018985 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIR-----GHVHTCGSNTHGQLGHGDTLDRPTP 259 (348)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~-----G~v~~wG~n~~gqLG~~~~~~~~~p 259 (348)
|-...... .. .+. ....|..++.- ..+.++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~~---------~~---~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQC---------VA---TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCCE---------EE---EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCcE---------EE---Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 97543111 11 111 12234444443 2344444555 8888886544322111000011111
Q ss_pred eEecCCCCCCCEEEEEecCc--eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc--ee
Q 018985 260 KSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HV 335 (348)
Q Consensus 260 ~~v~~~~~~~~v~~Ia~G~~--~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~--ht 335 (348)
..+........+..++...+ ..++-+.+|.|+.|-....++ ....+.. ....|..++...+ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~---~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE----------YVDSIDL---HEKSISDMQFSPDLTYF 233 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE----------EEEEEEC---CSSCEEEEEECTTSSEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE----------eEEEEec---CCCceeEEEECCCCCEE
Confidence 22222222125666665433 444556788999996543211 1111111 1224666665433 33
Q ss_pred EEEecCCcEEEe
Q 018985 336 VALDSSGYVSLC 347 (348)
Q Consensus 336 ~al~~~G~v~~w 347 (348)
++-..+|.|+.|
T Consensus 234 ~~~~~d~~i~v~ 245 (369)
T 3zwl_B 234 ITSSRDTNSFLV 245 (369)
T ss_dssp EEEETTSEEEEE
T ss_pred EEecCCceEEEE
Confidence 444567888777
No 41
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=73.04 E-value=56 Score=29.86 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=44.3
Q ss_pred eeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCC
Q 018985 218 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 218 i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n 296 (348)
|.+++. ....+++.++|.|..|=-....+. ..+.... ..+.++.+-....++++++|.|+.|=..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEECS--SCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccceee--cceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 899999 777888889999999965432211 1112221 2466777766667788999999999653
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=72.86 E-value=45 Score=28.69 Aligned_cols=161 Identities=6% Similarity=-0.121 Sum_probs=81.4
Q ss_pred CcEEEEecCC-----eEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC---CeeEEEEcC
Q 018985 112 GNMQITTGRY-----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQS 181 (348)
Q Consensus 112 ~i~~ia~G~~-----h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~---~h~~~lt~~ 181 (348)
.|..++-... ..++. .+|.|..|-....- ....+. .....|..++... ...+.-+.|
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ------------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC------------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETT
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce------------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCC
Confidence 4655555433 23443 88899999653211 011111 1234677777643 445555778
Q ss_pred CcEEEEECCCCCcccCCCCCCceeecEEec--ccCCCceeEEEec--CCeEEEEEcCCcEEEEeCCCCCCcC-------C
Q 018985 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLG-------H 250 (348)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~--~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~gqLG-------~ 250 (348)
|.|+.|-..... ....+. ......|..++.. ..+.+....||.|..|-......+. .
T Consensus 138 g~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 138 HALRLWNIQTDT------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp SCEEEEETTTTE------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred CeEEEEEeecCe------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 999999754311 111111 1123356666654 3455555678999999764321110 0
Q ss_pred CCC--CCCC------CceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCC
Q 018985 251 GDT--LDRP------TPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 251 ~~~--~~~~------~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~ 297 (348)
... .... .|..-........|..++......+.-..+|.|..|-...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 000 0000 0000000001135666655566777777899999997654
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=71.51 E-value=46 Score=28.21 Aligned_cols=194 Identities=7% Similarity=-0.046 Sum_probs=93.4
Q ss_pred EecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC-eeEEEEcCCcEEEEECCCCCc
Q 018985 117 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTCGDNSSFC 194 (348)
Q Consensus 117 a~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~-h~~~lt~~G~vy~wG~n~~gq 194 (348)
..+.-..+++ .||+++..+......+....... ..+ .........|..++...+ ..++...+|.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQ-INTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEE-EEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc--ccc-ceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence 3344566777 89999888875543332222111 111 111223335666665443 234444589999997654211
Q ss_pred ccCCCCCCceeecEEecc-cCCCceeEEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCE
Q 018985 195 CGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (348)
Q Consensus 195 lG~~~~~~~~~~p~~v~~-~~~~~i~~i~~G~--~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v 271 (348)
. .....+.. .....|..++... ...++-..+|.|+.|-..... ......+.... ..|
T Consensus 85 ~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~--~~i 144 (337)
T 1gxr_A 85 K---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELTSSA--PAC 144 (337)
T ss_dssp C---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEECSS--SCE
T ss_pred e---------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeecccCC--Cce
Confidence 1 00011110 1223455555543 344445678899999653210 00011122111 357
Q ss_pred EEEEecC--ceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecC--ceeEEEecCCcEEEe
Q 018985 272 VQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVSLC 347 (348)
Q Consensus 272 ~~Ia~G~--~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~--~ht~al~~~G~v~~w 347 (348)
..++... .+.++-..+|.|+.|-..... ....+.. ....|..++... ...++-..+|.|+.|
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQG---HTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeec---ccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 7776643 344555678999999654311 1111111 122466665532 334444567888777
No 44
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.34 E-value=17 Score=31.61 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=13.0
Q ss_pred CCeEEEEEcCCcEEEEeCC
Q 018985 225 LNFTGFLTIRGHVHTCGSN 243 (348)
Q Consensus 225 ~~hs~~lt~~G~v~~wG~n 243 (348)
..|+++. -+++||++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4566665 57799999954
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.05 E-value=79 Score=28.10 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=86.1
Q ss_pred cEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC--CeeEEEEcCCcEEEEEC
Q 018985 113 NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 113 i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~ 189 (348)
+..++-...+.++. .+|.|+.|-....- ............|..++... .+.++-+.+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44466566777778 99999999764311 11222232334677776544 34555567899999975
Q ss_pred CCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCC
Q 018985 190 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG 269 (348)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~ 269 (348)
.... ....+. .....|..++......+.-..+|.|+.|-....++ ....+.... .
T Consensus 164 ~~~~------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~--~ 218 (401)
T 4aez_A 164 ESQT------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQGHS--S 218 (401)
T ss_dssp TTCC------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--S
T ss_pred cCCe------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcCCC--C
Confidence 4311 111111 12345777777667777778899999997643221 111222221 3
Q ss_pred CEEEEEecCc--eeEEEEcCCcEEEEeCCC
Q 018985 270 SVVQIAAGPS--YMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 270 ~v~~Ia~G~~--~s~~lt~~g~vy~wG~n~ 297 (348)
.|..++...+ +.+.-..+|.|+.|-...
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 6777776533 344456789999997543
No 46
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.78 E-value=72 Score=27.52 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=85.9
Q ss_pred cEEEEEec--CCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---CCeEEEEEcCCcEE
Q 018985 164 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVH 238 (348)
Q Consensus 164 ~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~hs~~lt~~G~v~ 238 (348)
.+..+... .++.+++|++|++|.--........ ... + ...+.+|+.+.+- ....+++|++|.+.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~-------~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS-------KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE-------ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc-------ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence 44444333 3468899999999986533221100 000 2 2246678888762 25788899999888
Q ss_pred EEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEe--cCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEee
Q 018985 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (348)
Q Consensus 239 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~--G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~ 316 (348)
-.-..++-+- ..-...-.+.+...+..+.. +.++.+++|++|++|.+-...--.+|.+... .+ .+
T Consensus 94 r~~l~~~~~~--------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G---v~-~i- 160 (276)
T 3no0_A 94 KIPLAEFEYK--------AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG---VQ-GI- 160 (276)
T ss_dssp EEEGGGTTTC--------STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC---EE-CC-
T ss_pred EEEHHHhhhh--------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC---EE-EE-
Confidence 8765554311 11122222322245665544 4556899999999999865443333322111 11 11
Q ss_pred ccccCCCcEEEEEec--CceeEEEecCCcEE
Q 018985 317 TFRRKGIHVVRVSAG--DEHVVALDSSGYVS 345 (348)
Q Consensus 317 ~~~~~~~~v~~i~~G--~~ht~al~~~G~v~ 345 (348)
.+. ++.+|+.+... ..+.+++|++|.+.
T Consensus 161 ~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~k 190 (276)
T 3no0_A 161 KLE-KNDETSGLRIWNGEPYLLVITAKGRVK 190 (276)
T ss_dssp CCC-TTCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 122 23456665543 34567777888654
No 47
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=62.73 E-value=89 Score=28.21 Aligned_cols=205 Identities=7% Similarity=-0.010 Sum_probs=100.0
Q ss_pred CCCcEEEEecCC--eEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC---eeEEEEcCC
Q 018985 110 SAGNMQITTGRY--HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN---HAAFVLQSG 182 (348)
Q Consensus 110 ~~~i~~ia~G~~--h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~---h~~~lt~~G 182 (348)
...|..|+.-.. +.++. .+|.|+.|-.......-..... ......+. .....|..++.... ..+.-..+|
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~--~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGE--CQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCC--CCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcccc--CCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 445777777654 34444 7899999986542111000000 00011111 11224444544332 445556789
Q ss_pred cEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCc
Q 018985 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP 259 (348)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p 259 (348)
.|..|-.+...... ....+..........|..|+.. ....+....+|.|+.|-...... ..+
T Consensus 205 ~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~ 269 (430)
T 2xyi_A 205 TICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKP 269 (430)
T ss_dssp CEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSC
T ss_pred eEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccc
Confidence 99999876522111 1111211111123357777763 34444556799999997654211 111
Q ss_pred e-EecCCCCCCCEEEEEecCce---eEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCce-
Q 018985 260 K-SIAPLEEVGSVVQIAAGPSY---MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH- 334 (348)
Q Consensus 260 ~-~v~~~~~~~~v~~Ia~G~~~---s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~h- 334 (348)
. .+.... ..|..|+..... .+.-..+|.|..|-.....+. ...+.. ....|..|......
T Consensus 270 ~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------~~~~~~---h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 270 SHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFES---HKDEIFQVQWSPHNE 334 (430)
T ss_dssp SEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEEC---CSSCEEEEEECSSCT
T ss_pred eeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------eEEeec---CCCCEEEEEECCCCC
Confidence 1 222211 357777765432 334467899999976542220 011111 12246666654332
Q ss_pred --eEEEecCCcEEEe
Q 018985 335 --VVALDSSGYVSLC 347 (348)
Q Consensus 335 --t~al~~~G~v~~w 347 (348)
.+.-..+|.|..|
T Consensus 335 ~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 335 TILASSGTDRRLHVW 349 (430)
T ss_dssp TEEEEEETTSCCEEE
T ss_pred CEEEEEeCCCcEEEE
Confidence 3334467888777
No 48
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=61.92 E-value=83 Score=27.64 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=92.7
Q ss_pred CCCcEEEEecCCeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC--eeEEEEcCCcEE
Q 018985 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVF 185 (348)
Q Consensus 110 ~~~i~~ia~G~~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~--h~~~lt~~G~vy 185 (348)
...|..++-.....++. .||.|..|-......+ .............|..|+...+ +.+.-..||.|.
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 34577787655555555 8899999964321110 1111111112236777766543 344446788999
Q ss_pred EEECCCCCcccCCCCCCceeecEEecccC--CCceeEEEecC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCce
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~i~~G~---~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~ 260 (348)
.|-.... +.+..+. ...|..++... ...+.-..||.|..|-... ++ ...
T Consensus 153 iwd~~~~---------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~----------~~~ 206 (344)
T 4gqb_B 153 VWDLAQQ---------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PK----------PAS 206 (344)
T ss_dssp EEETTTT---------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SS----------CEE
T ss_pred EEECCCC---------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cc----------eee
Confidence 9965431 1111121 23466666533 2233446789999995432 11 011
Q ss_pred EecCCCCCCCEEEEEecC--ceeEE-EEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc---e
Q 018985 261 SIAPLEEVGSVVQIAAGP--SYMLA-VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---H 334 (348)
Q Consensus 261 ~v~~~~~~~~v~~Ia~G~--~~s~~-lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~---h 334 (348)
.+........+..++... .+.++ -..||.|..|=...... ...+.. ....|..|+...+ .
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----------~~~~~~---h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----------VLSSAV---HSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----------CEEEEC---CSSCEEEEEECSSSSCC
T ss_pred eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----------EEEEcC---CCCCEEEEEEccCCCeE
Confidence 111111112466666543 22233 35788999995432111 111211 1225777766432 2
Q ss_pred eEEEecCCcEEEe
Q 018985 335 VVALDSSGYVSLC 347 (348)
Q Consensus 335 t~al~~~G~v~~w 347 (348)
.+.-..||.|..|
T Consensus 273 lasgs~D~~i~vw 285 (344)
T 4gqb_B 273 LASLSEDCSLAVL 285 (344)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEeCCCeEEEE
Confidence 3334578888887
No 49
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=61.02 E-value=89 Score=27.67 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred EEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC-----CeEEEEEcCCcEEEEeC
Q 018985 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 168 ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~ 242 (348)
++...++.+++|+.|++|..-...-...+..... .+....+....+.+|+.+..-. .+.+++|++|.+.-.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G--~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG--QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC--cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 5567788999999999999987654444322211 1111222222455677654432 35788899998877765
Q ss_pred CCCCCcCCCCCCCCCCceEecCCCCCCCEEEE--EecCceeEEEEcCCcEEEEeCC
Q 018985 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 243 n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~I--a~G~~~s~~lt~~g~vy~wG~n 296 (348)
.++-.... ..-...-.+.+...++.+ ..+.++.+++|++|+++-+-.+
T Consensus 124 ~e~~~~~r------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 124 KHYKAQRY------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp GGGCCSCC------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGG
T ss_pred HHhhhccc------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 44321110 111222222222345443 3367788999999999887543
No 50
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=60.23 E-value=88 Score=27.38 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=86.1
Q ss_pred EEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEe-----cCCeEEEEEcCCcEEEEeC
Q 018985 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 168 ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~-----G~~hs~~lt~~G~v~~wG~ 242 (348)
++...++.+++|+.|++|..-...-...+..... .+....+....+.+|+.+.. ...+.+++|++|.+.-.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G--~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG--RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC--EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC--eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 5566788999999999999986654443322211 11111222224556776654 2345777899998776654
Q ss_pred CCCCCcCCCCCCCCCCceEecCCCCCCCEEEEE--ecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeecccc
Q 018985 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (348)
Q Consensus 243 n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia--~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~ 320 (348)
.++-... ......-.+.+...++.+. .+.++.+++|++|+++-+-..+--.+|..... .+...+.
T Consensus 127 ~e~~~~~-------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G-----v~~i~L~- 193 (307)
T 1zi0_A 127 TEFNRLR-------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-----VRGIRLG- 193 (307)
T ss_dssp GGGTTCC-------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCCCC-
T ss_pred HHhhccc-------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC-----eEeEEeC-
Confidence 4332111 1122222222223555443 35678899999999998865544333332111 1111222
Q ss_pred CCCcEEEEEec--CceeEEEecCCcE
Q 018985 321 KGIHVVRVSAG--DEHVVALDSSGYV 344 (348)
Q Consensus 321 ~~~~v~~i~~G--~~ht~al~~~G~v 344 (348)
.+..|+.+..- ....++++++|.+
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~ 219 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYG 219 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEE
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCce
Confidence 23356666532 2345666666643
No 51
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=58.77 E-value=86 Score=26.79 Aligned_cols=148 Identities=7% Similarity=-0.088 Sum_probs=84.1
Q ss_pred CCcEEEEecCC----eEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC--eeEEEEcCC
Q 018985 111 AGNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSG 182 (348)
Q Consensus 111 ~~i~~ia~G~~----h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~--h~~~lt~~G 182 (348)
..|..|+.... ..++. .||.|..|-....++. ....+. .....|..++...+ ..+..+.||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT----------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE----------EEEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce----------eEEEec-cccCCEEEEEECcCCCEEEEEcCCC
Confidence 45888887765 45555 7899999976432210 001111 12236777766443 455557889
Q ss_pred cEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEe--cC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCC
Q 018985 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 258 (348)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~--~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~ 258 (348)
.|..|-..... +..... ....|..++. .. .+.+.-..||.|+.|-..... .
T Consensus 109 ~v~iwd~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ-------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----------P 163 (368)
T ss_dssp EEEEEETTTTE-------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------C
T ss_pred cEEEEEcCCCC-------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------E
Confidence 99999754311 111111 2335677764 32 234444668999999643211 1
Q ss_pred ceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCC
Q 018985 259 PKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 259 p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~ 297 (348)
...+... ..+..+..-....++.+.++.++.|-...
T Consensus 164 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 164 MMVLQLP---ERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp SEEEECS---SCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred EEEEecC---CCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 1122222 35666666677888888999999997643
No 52
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=57.50 E-value=85 Score=26.35 Aligned_cols=120 Identities=7% Similarity=-0.132 Sum_probs=62.4
Q ss_pred CcEEEEecCCe-EEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC----CeeEEEEcCCcE
Q 018985 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQSGQV 184 (348)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~----~h~~~lt~~G~v 184 (348)
.|..++-.... .++. .||.|..|-...... . ..+..........|..++... ...+....||.|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------N---WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------C---EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------c---ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 36666654332 3333 789999996542110 0 011111112234688887653 345555789999
Q ss_pred EEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC----CeEEEEEcCCcEEEEeCCC
Q 018985 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL----NFTGFLTIRGHVHTCGSNT 244 (348)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~hs~~lt~~G~v~~wG~n~ 244 (348)
..|-........ ......+..........|..++... ...+..+.||.|+.|-...
T Consensus 84 ~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 84 KLWEEDPDQEEC----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEEECTTSCTT----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEEecCCCcccc----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999765421110 0001111111112234577777664 3566667899999997544
No 53
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.28 E-value=1e+02 Score=27.28 Aligned_cols=161 Identities=9% Similarity=0.018 Sum_probs=89.9
Q ss_pred cCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC-----CeeEEEEcCCcEEEEECCCC
Q 018985 119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGDNSS 192 (348)
Q Consensus 119 G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~-----~h~~~lt~~G~vy~wG~n~~ 192 (348)
...+.+++ +.|++|..-...--..+...... .....+++...++|+.+.+.. ...+++|++|.+.-.-...+
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~ 129 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQ--HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF 129 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE--EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE--EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence 34445556 89999988754433322221111 011123455667888887664 46788899999887764443
Q ss_pred CcccCCCCCCceeecEEeccc-CCCceeE--EEecCCeEEEEEcCCcEEEEeCC--CCCCcCCCCCCCCCCceEecCCCC
Q 018985 193 FCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSN--THGQLGHGDTLDRPTPKSIAPLEE 267 (348)
Q Consensus 193 gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~hs~~lt~~G~v~~wG~n--~~gqLG~~~~~~~~~p~~v~~~~~ 267 (348)
-... ..-.....+ ++..++. ++.+..+.+++|++|++|.+-.. +--.+|..... +++-.+..
T Consensus 130 ~~~~--------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L~~ 196 (327)
T 3uc1_A 130 DSNR--------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRFNI 196 (327)
T ss_dssp CCCC--------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCCCT
T ss_pred hccc--------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecCCC
Confidence 2110 001111111 2223333 33466788999999999999877 44444433222 12223333
Q ss_pred CCCEEEEEecC--ceeEEEEcCCcEEEEe
Q 018985 268 VGSVVQIAAGP--SYMLAVTGNGVVYSFG 294 (348)
Q Consensus 268 ~~~v~~Ia~G~--~~s~~lt~~g~vy~wG 294 (348)
...|+.+..-. .+.+++|++|.+--.-
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 36788877653 4678889999665543
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=56.65 E-value=1e+02 Score=26.97 Aligned_cols=198 Identities=7% Similarity=-0.063 Sum_probs=0.0
Q ss_pred cEEEEecCCeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECC
Q 018985 113 NMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (348)
Q Consensus 113 i~~ia~G~~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n 190 (348)
+..++......++. .+|.|+.|-....-.+..-.... ....-..++......+.-..+|.|+.|-..
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH-----------GPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS-----------SCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC-----------CceEEEEECCCCCEEEEEcCCCEEEEEECC
Q ss_pred CCCcccCCCCCCceeecEEecccCCCceeEEEecCC-eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCC
Q 018985 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG 269 (348)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~ 269 (348)
.. .+..........|..++.... ..++...+|.|+.|-... ..+........ .
T Consensus 278 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~~~~~~~~-~ 331 (425)
T 1r5m_A 278 NG-------------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ------------NTLLALSIVDG-V 331 (425)
T ss_dssp SB-------------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT------------TEEEEEEECTT-C
T ss_pred CC-------------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC------------CcEeEecccCC-c
Q ss_pred CEEEEEec--CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeE------EeeccccCCC--cEEEEEecCc--eeEE
Q 018985 270 SVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR------AIQTFRRKGI--HVVRVSAGDE--HVVA 337 (348)
Q Consensus 270 ~v~~Ia~G--~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~------~v~~~~~~~~--~v~~i~~G~~--ht~a 337 (348)
.|..++.. ....++-..+|.|+.|-................... .+..+..... .|..++...+ +.++
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Q ss_pred EecCCcEEEe
Q 018985 338 LDSSGYVSLC 347 (348)
Q Consensus 338 l~~~G~v~~w 347 (348)
-..||.|+.|
T Consensus 412 ~~~dg~i~iw 421 (425)
T 1r5m_A 412 AYSLQEGSVV 421 (425)
T ss_dssp EESSSCCEEE
T ss_pred EecCceEEEE
No 55
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=55.43 E-value=29 Score=30.63 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.9
Q ss_pred CceeEEEecCCcEEEeC
Q 018985 332 DEHVVALDSSGYVSLCS 348 (348)
Q Consensus 332 ~~ht~al~~~G~v~~wG 348 (348)
..|+++. .++++|++|
T Consensus 110 ~~~~~~~-~~~~iyv~G 125 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTG 125 (357)
T ss_dssp SSEEEEE-ETTEEEEEE
T ss_pred ccceEEE-ECCEEEEEe
Confidence 4566666 788999886
No 56
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.42 E-value=1.1e+02 Score=26.77 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=93.8
Q ss_pred EEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec-----CCeeEEEEcCCcEEEEEC
Q 018985 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 116 ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G-----~~h~~~lt~~G~vy~wG~ 189 (348)
++.+..+.+++ +.|++|..-...--..|+..... .....+.+...++|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 34445666777 99999988764322222211111 01112334455677777654 346889999999999876
Q ss_pred CCCCcccCCCCCCceeecEEeccc-CCCceeEEE--ecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCC
Q 018985 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (348)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~--~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~ 266 (348)
..+-... ..-.....+ ++..++.+. .+..+.+++|++|.+.-+-..+.-..|.+... ++.-.+.
T Consensus 132 ~~~~~~r--------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~ 198 (312)
T 1suu_A 132 TDFKAVK--------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK 198 (312)
T ss_dssp GGGCC------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC
T ss_pred HHhhccC--------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC
Confidence 5542110 001111111 233455443 35677889999999999987665444433221 1222222
Q ss_pred CCCCEEEEEe--cCceeEEEEcCCcEEEEeCCCCCccC
Q 018985 267 EVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLG 302 (348)
Q Consensus 267 ~~~~v~~Ia~--G~~~s~~lt~~g~vy~wG~n~~gqLG 302 (348)
+...|+.+.. ...+.+++|++|.+.-.-...+-..+
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~ 236 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELK 236 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccC
Confidence 2246766654 34567888999987766655443333
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=53.33 E-value=1.1e+02 Score=26.30 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=97.5
Q ss_pred CcEEEEecCCe-EEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec----CCeeEEEEcCCcE
Q 018985 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQV 184 (348)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G----~~h~~~lt~~G~v 184 (348)
.|..++..... .++. .||.|+.|=.... . ..+..........|..++.. ....+.-..||.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------T--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT---------E--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------c--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 36666654332 3333 6888888854310 0 01111111123367777764 3455566788999
Q ss_pred EEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC----CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCce
Q 018985 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL----NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (348)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~ 260 (348)
..|-.... ...+..........|..++.-. ...+..+.+|.|..|-...... ..+.
T Consensus 82 ~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~~ 141 (379)
T 3jrp_A 82 LIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 141 (379)
T ss_dssp EEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCEE
T ss_pred EEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eeeE
Confidence 99964431 1111111111233566666653 3456667899999997543211 1222
Q ss_pred EecCCCCCCCEEEEEecC---------------ceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcE
Q 018985 261 SIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325 (348)
Q Consensus 261 ~v~~~~~~~~v~~Ia~G~---------------~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v 325 (348)
.+.... ..|..++... ...++-..+|.|+.|-..... .... .+..+......|
T Consensus 142 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~--~~~~~~~h~~~v 209 (379)
T 3jrp_A 142 IIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYV--LESTLEGHSDWV 209 (379)
T ss_dssp EEECCT--TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEE--EEEEECCCSSCE
T ss_pred EecCCC--CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------ccee--eEEEEecccCcE
Confidence 222221 3566666653 344555678999999543211 1111 111111122357
Q ss_pred EEEEecCc-----eeEEEecCCcEEEe
Q 018985 326 VRVSAGDE-----HVVALDSSGYVSLC 347 (348)
Q Consensus 326 ~~i~~G~~-----ht~al~~~G~v~~w 347 (348)
..++...+ ..+....||.|..|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 77765543 34444578888887
No 58
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=53.26 E-value=1.8e+02 Score=28.74 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=81.9
Q ss_pred CcEEEEEec----CCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec----CCeEEEEEcC
Q 018985 163 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 234 (348)
Q Consensus 163 ~~i~~ia~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~hs~~lt~~ 234 (348)
..|..++.. ....+.-..||.|+.|-.... ...+..........|..++.. ....+.-+.|
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 367777764 345556678999999964331 111111111123456776664 3456666788
Q ss_pred CcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecC---------------ceeEEEEcCCcEEEEeCCCCC
Q 018985 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNF 299 (348)
Q Consensus 235 G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~---------------~~s~~lt~~g~vy~wG~n~~g 299 (348)
|.|..|-...... ..+..+.... ..|..++... ...+.-..+|.|+.|-.....
T Consensus 123 g~I~vwdl~~~~~---------~~~~~~~~~~--~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 123 GKVSVVEFKENGT---------TSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp SEEEEEECCSSSC---------CCCEEEECCS--SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEEeecCCC---------cceeEeecCC--CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 9999997543211 1122222221 3566666543 344555678999999643211
Q ss_pred ccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc-----eeEEEecCCcEEEe
Q 018985 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVSLC 347 (348)
Q Consensus 300 qLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~-----ht~al~~~G~v~~w 347 (348)
....+ +..+......|..++...+ ..+.-..||.|..|
T Consensus 192 --------~~~~~--~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 192 --------QTYVL--ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp --------TEEEE--EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred --------cccee--eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 11111 1111112235777776543 34444578888887
No 59
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=53.06 E-value=1.3e+02 Score=27.17 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=72.4
Q ss_pred cCCCCcEEE--EEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec-----CCeEEEE
Q 018985 159 FPSAAHVVQ--VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFL 231 (348)
Q Consensus 159 ~~~~~~i~~--ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~hs~~l 231 (348)
+.....+.. ++.+.++.+++|+.|++|..-...-...|..... ......+..-.+.+|+.+..- ..+.+++
T Consensus 42 lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G--~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~ 119 (370)
T 3l6v_A 42 TKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG--RPIINWIPLESGERVQAVLPVREYADNRYVFMA 119 (370)
T ss_dssp CSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEE
T ss_pred cCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC--cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEE
Confidence 333344443 3445566888999999999876554433322221 111111222246677777653 3467888
Q ss_pred EcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEE--EecCceeEEEEcCCcEEEEeCC
Q 018985 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 232 t~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~I--a~G~~~s~~lt~~g~vy~wG~n 296 (348)
|++|.+.-.-..++-... ..-...-.+.+...++.+ ..+.++.+++|++|++.-+-..
T Consensus 120 T~~G~vKrt~l~e~~~~~-------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 120 TRNGTVKKTPLSEFAFRL-------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp ETTSEEEEEEGGGGCSCC-------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred eCCCeEEEeEHHHhhccc-------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 999988777655443211 111112222222344443 3466788999999999887443
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=52.23 E-value=1.2e+02 Score=26.39 Aligned_cols=205 Identities=9% Similarity=0.035 Sum_probs=98.4
Q ss_pred CcEEEEecC--CeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeec----CCCCcEEEEEec---CCeeEEEEc
Q 018985 112 GNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF----PSAAHVVQVSAS---ENHAAFVLQ 180 (348)
Q Consensus 112 ~i~~ia~G~--~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~----~~~~~i~~ia~G---~~h~~~lt~ 180 (348)
.|..++... ...++. .||.|..|-......... ........... .....|..++.. ....+.-+.
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY----YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC----EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce----EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 466676654 233333 789999997653221111 00000011110 122367777764 345556677
Q ss_pred CCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC-----CeEEEEEcCCcEEEEeCCCCCCcCCCCCCC
Q 018985 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLGHGDTLD 255 (348)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~ 255 (348)
+|.|..|-...... ...+. . ...+..+.... ...++-..+|.|+.|-.....
T Consensus 121 d~~i~iwd~~~~~~------------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------- 177 (408)
T 4a11_B 121 DKTLKVWDTNTLQT------------ADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--------- 177 (408)
T ss_dssp TSEEEEEETTTTEE------------EEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---------
T ss_pred CCeEEEeeCCCCcc------------ceecc-C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---------
Confidence 99999997543110 01111 1 12334444332 245555778999999754311
Q ss_pred CCCceEecCCCCCCCEEEEEecCce---eEEEEcCCcEEEEeCCCCCc-cCCCCC-CCeeeeEEeeccccCCCcEEEEEe
Q 018985 256 RPTPKSIAPLEEVGSVVQIAAGPSY---MLAVTGNGVVYSFGSGSNFC-LGHGEQ-HDELQPRAIQTFRRKGIHVVRVSA 330 (348)
Q Consensus 256 ~~~p~~v~~~~~~~~v~~Ia~G~~~---s~~lt~~g~vy~wG~n~~gq-LG~~~~-~~~~~P~~v~~~~~~~~~v~~i~~ 330 (348)
....+.... ..|..++...+. .+.-..+|.|+.|-...... +-.-.. ..................|..++.
T Consensus 178 --~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 --CSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp --CCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred --eeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 112222221 367777765443 34556889999997643221 100000 000000000000111235666666
Q ss_pred cCc--eeEEEecCCcEEEe
Q 018985 331 GDE--HVVALDSSGYVSLC 347 (348)
Q Consensus 331 G~~--ht~al~~~G~v~~w 347 (348)
..+ +.++...||.|..|
T Consensus 254 ~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp CTTSSEEEEEETTSCEEEE
T ss_pred cCCCCEEEEecCCCeEEEE
Confidence 433 45555678888887
No 61
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.01 E-value=1.1e+02 Score=25.50 Aligned_cols=145 Identities=6% Similarity=-0.086 Sum_probs=76.7
Q ss_pred CcEEEEecCCeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec--CCeeEEEEcCCcEEEE
Q 018985 112 GNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTC 187 (348)
Q Consensus 112 ~i~~ia~G~~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~w 187 (348)
.|..++.-....++. .||.|+.|-.... .....+.. ....|..++.. ....+.-..+|.|..|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSS------------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCC------------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 466666533333444 7899999975321 01111111 12355555543 3445555678888888
Q ss_pred ECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCC
Q 018985 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE 267 (348)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~ 267 (348)
-..... ..... ..+. .....|..++......+.-+.+|.|..|-. ++ ....+....
T Consensus 87 ~~~~~~------~~~~~---~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~----------~~~~~~~~~- 142 (313)
T 3odt_A 87 PLFATS------GEDPL---YTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWKE---GS----------LVYNLQAHN- 142 (313)
T ss_dssp ETTCCT------TSCC----CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET---TE----------EEEEEECCS-
T ss_pred EeeecC------CCCcc---cchh-hcccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc----------EEEecccCC-
Confidence 654311 00000 0111 123457777776677777788999999951 10 111112111
Q ss_pred CCCEEEEEe---cCceeEEEEcCCcEEEEe
Q 018985 268 VGSVVQIAA---GPSYMLAVTGNGVVYSFG 294 (348)
Q Consensus 268 ~~~v~~Ia~---G~~~s~~lt~~g~vy~wG 294 (348)
..|..++. .....++-..+|.|+.|-
T Consensus 143 -~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 143 -ASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp -SCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred -CceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 35656554 455666677889999995
No 62
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=50.67 E-value=1.3e+02 Score=26.51 Aligned_cols=212 Identities=11% Similarity=0.028 Sum_probs=107.6
Q ss_pred EEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC-----CeeEEEEcCCcEEEEEC
Q 018985 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 116 ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~-----~h~~~lt~~G~vy~wG~ 189 (348)
++....+.+++ +.|++|..-...--..+...... .....+++...++|+.+..-. ...+++|++|.+.-.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~--~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ--HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc--ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 34455666667 99999998765433333222111 011123344556777665433 35788899999887765
Q ss_pred CCCCcccCCCCCCceeecEEeccc-CCCceeE--EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCC
Q 018985 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (348)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~ 266 (348)
..+-.... ........+ ++..++. +..+..+.+++|++|.++.+-.++.-.+|.. ...++...+.
T Consensus 124 ~e~~~~~r-------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-----a~GV~~i~L~ 191 (323)
T 1wp5_A 124 KHYKAQRY-------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR-----AAGVKGMNLK 191 (323)
T ss_dssp GGGCCSCC-------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS-----CCCEECCCCC
T ss_pred HHhhhccc-------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC-----CcCEEEEEeC
Confidence 44321110 001111111 2223333 3346778999999999999987765444432 2233444444
Q ss_pred CCCCEEEEEec--Cc-eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEE--EecCceeEEEecC
Q 018985 267 EVGSVVQIAAG--PS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAGDEHVVALDSS 341 (348)
Q Consensus 267 ~~~~v~~Ia~G--~~-~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i--~~G~~ht~al~~~ 341 (348)
+...|+.+..- .. ..+.+|+.|..--.-...+-.-+.+.. -...++ .+...+..++.+ ..+.+..++++++
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~---~~~~~~~~l~~~~~v~~~~~i~~it~~ 267 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILR---ELKANPHRISGFVVAQDSDTIYLQTEK 267 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSC---CCSSSCCCEEEEEEECTTCEEEEEETT
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECee---ecCCCCceEEEEEEeCCCCeEEEEeCC
Confidence 43567766542 22 567777777544332222211111111 111111 111112234432 3456778888899
Q ss_pred CcEE
Q 018985 342 GYVS 345 (348)
Q Consensus 342 G~v~ 345 (348)
|++.
T Consensus 268 g~~i 271 (323)
T 1wp5_A 268 SFIE 271 (323)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 8764
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=48.40 E-value=2e+02 Score=28.04 Aligned_cols=149 Identities=9% Similarity=-0.070 Sum_probs=75.8
Q ss_pred CcEEEEecCCe-EEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC---CeeEEEEcCCcEE
Q 018985 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQVF 185 (348)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~---~h~~~lt~~G~vy 185 (348)
.|..++..... .++. .+|.|..|-..... ............|..++... ...+.-+.+|.|+
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 46666654433 2333 67888888643211 01111111223577776643 3455557789999
Q ss_pred EEECCCCCcccCCCCCCceeecEEecccCCCceeEEEe----cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceE
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA----GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~ 261 (348)
.|-..... ....+.......+..++. .....++-+.+|.|..|-... ++ ....
T Consensus 167 vwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~----------~~~~ 223 (814)
T 3mkq_A 167 VWSLGQST------------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KS----------CVAT 223 (814)
T ss_dssp EEETTCSS------------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TE----------EEEE
T ss_pred EEECCCCc------------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-Cc----------EEEE
Confidence 99753310 011111111123444443 334555556789999996432 11 1122
Q ss_pred ecCCCCCCCEEEEEecCce--eEEEEcCCcEEEEeCCC
Q 018985 262 IAPLEEVGSVVQIAAGPSY--MLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 262 v~~~~~~~~v~~Ia~G~~~--s~~lt~~g~vy~wG~n~ 297 (348)
+.... ..|..++...+. .+.-..+|.|+.|-...
T Consensus 224 ~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 224 LEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 22221 367777765543 44455789999996543
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=47.53 E-value=1.6e+02 Score=26.48 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=72.0
Q ss_pred CCCCcEEEEecC--CeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCC-CCcEEEEEec---CCeeEEEEc
Q 018985 109 TSAGNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSAS---ENHAAFVLQ 180 (348)
Q Consensus 109 ~~~~i~~ia~G~--~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~-~~~i~~ia~G---~~h~~~lt~ 180 (348)
...+|..|+--. ...+|. .||.|..|-..... .+..+.+.. ...|..|+.. ....+.-..
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence 345688887643 345666 78999999542210 111122211 2256666643 233344457
Q ss_pred CCcEEEEECCCCCcccCCCCCCceeecEEecccCCCcee--EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCC
Q 018985 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK--QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 258 (348)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~--~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~ 258 (348)
||.|..|-... + ......-.......+. .+.......+.-+.+|.|+.|-... .++
T Consensus 186 D~~v~iwd~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~---------- 243 (435)
T 4e54_B 186 EGTTRLQDFKG-N----------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL---------- 243 (435)
T ss_dssp SSCEEEEETTS-C----------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC----------
T ss_pred CCEEEEeeccC-C----------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee----------
Confidence 88999995421 0 0000000000111122 2233334444446688888885421 010
Q ss_pred ceEecCCCCCCCEEEEEecCc--eeE-EEEcCCcEEEEeCC
Q 018985 259 PKSIAPLEEVGSVVQIAAGPS--YML-AVTGNGVVYSFGSG 296 (348)
Q Consensus 259 p~~v~~~~~~~~v~~Ia~G~~--~s~-~lt~~g~vy~wG~n 296 (348)
..+... ...|..|+.... +.+ .-..||.|..|=..
T Consensus 244 -~~~~~h--~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 244 -WNLRMH--KKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp -CCSBCC--SSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred -EEEecc--cceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence 011111 136888876432 223 33578888888543
No 65
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=47.35 E-value=1.2e+02 Score=24.86 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.9
Q ss_pred CeeEEEEcCCcEEEEEC
Q 018985 173 NHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 173 ~h~~~lt~~G~vy~wG~ 189 (348)
-+.++++.+|++|....
T Consensus 69 p~~i~~~~~g~l~v~~~ 85 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTDF 85 (270)
T ss_dssp CCCEEECTTCCEEEEET
T ss_pred cceeEECCCCCEEEEcC
Confidence 35566777777776654
No 66
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=46.57 E-value=1.5e+02 Score=25.92 Aligned_cols=184 Identities=11% Similarity=-0.018 Sum_probs=90.4
Q ss_pred CcEEEEecCCe-EEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC---CeeEEEEcCCcEE
Q 018985 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQVF 185 (348)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~---~h~~~lt~~G~vy 185 (348)
.|..|+....- .++. .||.|..|-.... + ....+. .....|..|+... ...+.-..||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~-----------~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A-----------VLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT-E-----------EEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c-----------EEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 46666654432 2333 7788888854321 0 011111 1123677776533 2344556789999
Q ss_pred EEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC--CeEEE-EEcCCcEEEEeCCCCCCcCCCCCCCCCCceEe
Q 018985 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGF-LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (348)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~-lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v 262 (348)
.|-....-.+.... .......+..|+.-. .+.++ -+.|+.|+.|-... ++ ....+
T Consensus 208 ~wd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~----------~~~~~ 265 (357)
T 4g56_B 208 LWDTRKPKPATRID-----------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PD----------SAQTS 265 (357)
T ss_dssp ECCTTSSSCBCBCC-----------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GG----------GCEEE
T ss_pred EEECCCCceeeeee-----------eccccccccchhhhhcccceEEEeecccceeEEECCC-Cc----------EeEEE
Confidence 99543211110000 001123355665431 23333 36788999996432 11 11122
Q ss_pred cCCCCCCCEEEEEecCc---eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecC-c--eeE
Q 018985 263 APLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-E--HVV 336 (348)
Q Consensus 263 ~~~~~~~~v~~Ia~G~~---~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~-~--ht~ 336 (348)
.... ..|..|+...+ ..+.-.+||.|+.|=... ++ .+..+.+. ..|..|+... + ..+
T Consensus 266 ~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~-------------~~~~~~H~-~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 266 AVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE-------------VFRDLSHR-DFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE-------------EEEECCCS-SCEEEEEECSSSTTEEE
T ss_pred eccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc-------------EeEECCCC-CCEEEEEEeCCCCCEEE
Confidence 2222 36888876432 333456889999994322 11 11222222 2577787642 2 223
Q ss_pred EEecCCcEEEe
Q 018985 337 ALDSSGYVSLC 347 (348)
Q Consensus 337 al~~~G~v~~w 347 (348)
.-..||+|+.|
T Consensus 329 s~s~Dg~v~iW 339 (357)
T 4g56_B 329 TVGWDHKVLHH 339 (357)
T ss_dssp EEETTSCEEEE
T ss_pred EEcCCCeEEEE
Confidence 33578999988
No 67
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.23 E-value=1.5e+02 Score=25.85 Aligned_cols=210 Identities=13% Similarity=0.078 Sum_probs=105.8
Q ss_pred EEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEe-----cCCeeEEEEcCCcEEEEEC
Q 018985 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA-----SENHAAFVLQSGQVFTCGD 189 (348)
Q Consensus 116 ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~-----G~~h~~~lt~~G~vy~wG~ 189 (348)
++....+.+++ +.|++|..-...--..+...... .....+++...++|+.+.. .....+++|++|.+.-.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR--PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE--EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe--EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 34445566666 99999998765433333322111 0111233445567777654 2335778899999877654
Q ss_pred CCCCcccCCCCCCceeecEEeccc-CCCceeE--EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCC
Q 018985 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (348)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~ 266 (348)
..+-.... .......+ ++..++. ...+..+.+++|++|+++-+-..+.-.+|.... -++.-.+.
T Consensus 127 ~e~~~~~r--------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-----Gv~~i~L~ 193 (307)
T 1zi0_A 127 TEFNRLRT--------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-----GVRGIRLG 193 (307)
T ss_dssp GGGTTCCT--------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-----CEECCCCC
T ss_pred HHhhcccc--------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-----CeEeEEeC
Confidence 33211110 11111111 2233433 234667889999999999997766544444222 12222333
Q ss_pred CCCCEEEEEec--CceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEe--cCceeEEEecCC
Q 018985 267 EVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSG 342 (348)
Q Consensus 267 ~~~~v~~Ia~G--~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~--G~~ht~al~~~G 342 (348)
+...|+.+..- ....+++|+.|.+--.-...+-.-+.+.. - ..+..+..+.-.++.+.. ..+..+++|++|
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-G----~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-G----VISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-C----EESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-C----EEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 33578777543 23467778887644332222211111100 0 111111112124554443 556678888888
Q ss_pred cEE
Q 018985 343 YVS 345 (348)
Q Consensus 343 ~v~ 345 (348)
.+.
T Consensus 269 ~~i 271 (307)
T 1zi0_A 269 TLV 271 (307)
T ss_dssp CEE
T ss_pred cEE
Confidence 764
No 68
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=45.53 E-value=8.6 Score=34.03 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=30.5
Q ss_pred cccccCChHHHHHHHhhCCCCchhhh-hhcccccccc
Q 018985 8 FSIEELPSHLIFEILTSGRLSAVDLA-HLELTSKTFG 43 (348)
Q Consensus 8 ~~~~~lP~~~~~~i~~~~~l~~~~l~-~l~~t~~~~~ 43 (348)
..+..||.+++..|| -+|.+.+|. ....+|+.+.
T Consensus 49 ~~~~~LP~ell~~Il--~~Lp~~~L~~r~~~VCk~Wr 83 (297)
T 2e31_A 49 EYLAELPEPLLLRVL--AELPATELVQACRLVCLRWK 83 (297)
T ss_dssp CCTTSSCHHHHHHHH--HTSCHHHHHHTGGGTCHHHH
T ss_pred cChhhCCHHHHHHHH--HcCCHHHHHHHHHHHhHHHH
Confidence 357899999999999 899999998 8999999876
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=45.42 E-value=8.4 Score=33.93 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=29.8
Q ss_pred ccccCChHHHHHHHhhCCCCchhhhhhccccccccC
Q 018985 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (348)
Q Consensus 9 ~~~~lP~~~~~~i~~~~~l~~~~l~~l~~t~~~~~~ 44 (348)
.+.+||++++.+|| .+|+..|+.....+|+.+..
T Consensus 8 ~~~~LP~eil~~If--~~L~~~d~~~~~~vc~~W~~ 41 (336)
T 2ast_B 8 SWDSLPDELLLGIF--SCLCLPELLKVSGVCKRWYR 41 (336)
T ss_dssp CSSSSCHHHHHHHH--TTSCHHHHHHTTSSCHHHHH
T ss_pred ChhhCCHHHHHHHH--HhCCHHHHHHHHHHHHHHHH
Confidence 46899999999999 89999999998888886653
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=45.10 E-value=1.4e+02 Score=25.30 Aligned_cols=109 Identities=12% Similarity=-0.026 Sum_probs=61.6
Q ss_pred CcEEEEEecCC-----eeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcCC
Q 018985 163 AHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRG 235 (348)
Q Consensus 163 ~~i~~ia~G~~-----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G 235 (348)
..|..|+...+ ..+.-..||.|..|-....++ .....+.. ....|..++.. ..+.+..+.||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 47888887765 344446789999997653211 11112221 22346666653 34555667799
Q ss_pred cEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEe--cCce--eEEEEcCCcEEEEeCC
Q 018985 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSY--MLAVTGNGVVYSFGSG 296 (348)
Q Consensus 236 ~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~--G~~~--s~~lt~~g~vy~wG~n 296 (348)
.|..|-.... .+..+... ...|..++. ..+. .+.-..+|.|+.|=..
T Consensus 109 ~v~iwd~~~~------------~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 109 TAKMWDLSSN------------QAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp EEEEEETTTT------------EEEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred cEEEEEcCCC------------Cceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 9999965431 11222222 146777775 3332 3444578999999653
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=45.04 E-value=2.3e+02 Score=27.66 Aligned_cols=184 Identities=5% Similarity=-0.080 Sum_probs=89.4
Q ss_pred cEEEEecC--CeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC--eeEEEEcCCcEEEE
Q 018985 113 NMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFTC 187 (348)
Q Consensus 113 i~~ia~G~--~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~w 187 (348)
|..++-.. ...+.- .+|.|+.|-...... ...+. .....|..++...+ ..+.-+.+|.|..|
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK------------VVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCE------------EEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE------------EEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 55554332 233333 789999997543211 11111 12235666665544 34445678899999
Q ss_pred ECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecC
Q 018985 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (348)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~ 264 (348)
-..... .....+. .....|..++... ...+.-+.+|.|..|-..... ....+..
T Consensus 125 ~~~~~~-----------~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~ 181 (814)
T 3mkq_A 125 NWENNW-----------ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTT 181 (814)
T ss_dssp EGGGTS-----------EEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEEC
T ss_pred ECCCCc-----------eEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEec
Confidence 653210 1111111 1223466666533 344555678999999653211 1112221
Q ss_pred CCCCCCEEEEEe----cCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc--eeEEE
Q 018985 265 LEEVGSVVQIAA----GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVAL 338 (348)
Q Consensus 265 ~~~~~~v~~Ia~----G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~--ht~al 338 (348)
... ..+..++. .....++-..+|.|+.|-.... .....+.. ....|..++...+ ..++-
T Consensus 182 ~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~---~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 182 GQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----------SCVATLEG---HMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp CCT-TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----------EEEEEEEC---CSSCEEEEEECSSSSEEEEE
T ss_pred CCC-CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------cEEEEEcC---CCCCEEEEEEcCCCCEEEEE
Confidence 111 23444443 2334455567889999964321 11122221 1224666655443 33444
Q ss_pred ecCCcEEEe
Q 018985 339 DSSGYVSLC 347 (348)
Q Consensus 339 ~~~G~v~~w 347 (348)
..||.|+.|
T Consensus 247 ~~dg~v~vw 255 (814)
T 3mkq_A 247 SEDGTLKIW 255 (814)
T ss_dssp ETTSCEEEE
T ss_pred eCCCeEEEE
Confidence 567888887
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=44.57 E-value=1.6e+02 Score=25.61 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=57.0
Q ss_pred cEEEEEecCC-eeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEeccc--C---CCceeEEEec--CCeEEEEEcC-
Q 018985 164 HVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--K---GVPCKQVTAG--LNFTGFLTIR- 234 (348)
Q Consensus 164 ~i~~ia~G~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~---~~~i~~i~~G--~~hs~~lt~~- 234 (348)
.|..++...+ ..+.-+.+|.|+.|-....- ....+... . ...|..++.. ..+.++-..+
T Consensus 188 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 188 FATSVDISERGLIATGFNNGTVQISELSTLR------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp CCCEEEECTTSEEEEECTTSEEEEEETTTTE------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred CceEEEECCCceEEEEeCCCcEEEEECCCCc------------eeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 5556655443 33344577899999754310 00111110 1 3346666653 3444555667
Q ss_pred --CcEEEEeCCCCCCcCCCCCCCCCCceEecC-----------CCCCCCEEEEEecC--ceeEEEEcCCcEEEEeCC
Q 018985 235 --GHVHTCGSNTHGQLGHGDTLDRPTPKSIAP-----------LEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 235 --G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~-----------~~~~~~v~~Ia~G~--~~s~~lt~~g~vy~wG~n 296 (348)
|.|+.|-...... ...+.. ......|..++... ...++-..+|.|+.|-..
T Consensus 256 ~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 256 SFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp TEEEEEEEETTTCCE-----------EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCceEEEEECCCCcc-----------cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 8899997543211 111111 00124677777753 344445678899999654
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=43.53 E-value=1.8e+02 Score=25.93 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=76.3
Q ss_pred EEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCC-CCcEEEEEecCC--eeEEEEcCCcEEEEECCC
Q 018985 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASEN--HAAFVLQSGQVFTCGDNS 191 (348)
Q Consensus 116 ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~-~~~i~~ia~G~~--h~~~lt~~G~vy~wG~n~ 191 (348)
|+=+..+.+++ -|+.||.|-... |+ ....+.... ...|..|+...+ +.+.-+.||.|..|-...
T Consensus 111 l~wS~~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 111 VDWSSGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 33345568888 999999996532 11 111222222 235777776544 344446889999997543
Q ss_pred CCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCE
Q 018985 192 SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (348)
Q Consensus 192 ~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v 271 (348)
...+ ..+.. ....+..++......+.-..++.++.|-...... ....+.... ..+
T Consensus 179 ~~~~------------~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----------~~~~~~~h~--~~~ 233 (420)
T 4gga_A 179 QKRL------------RNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSGHS--QEV 233 (420)
T ss_dssp TEEE------------EEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--SCE
T ss_pred CcEE------------EEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeeecccce----------eeEEecccc--cce
Confidence 1111 11111 2234666666555555566788888885432111 111112111 234
Q ss_pred EEEEec--CceeEEEEcCCcEEEEeCC
Q 018985 272 VQIAAG--PSYMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 272 ~~Ia~G--~~~s~~lt~~g~vy~wG~n 296 (348)
..+... ....+....||.+..|-..
T Consensus 234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 234 CGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred eeeeecCCCCeeeeeeccccceEEeec
Confidence 444443 3344555678889988654
No 74
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=43.46 E-value=1.9e+02 Score=26.15 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=67.9
Q ss_pred cCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec-----CCeeEEEEcCCcEEEEECCCC
Q 018985 119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGDNSS 192 (348)
Q Consensus 119 G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G-----~~h~~~lt~~G~vy~wG~n~~ 192 (348)
+..+.+++ +.|++|..-...--..|+..... .....+++....+|+.+..- ..+.+++|++|.+.-.-...+
T Consensus 56 t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~--~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~ 133 (370)
T 3l6v_A 56 THDTLLTFTSSGKVFWLPVHQLPEAGSNARGR--PIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEF 133 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCcccCCc--CHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHh
Confidence 33445556 99999988765433333322211 11112334556688887664 346888999999887765444
Q ss_pred CcccCCCCCCceeecEEeccc-CCCcee--EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCC
Q 018985 193 FCCGHRDTNRPIFRPRLVEAL-KGVPCK--QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG 251 (348)
Q Consensus 193 gqlG~~~~~~~~~~p~~v~~~-~~~~i~--~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~ 251 (348)
-.... .-.....+ .+..++ .+..+..+.+++|++|++.-+-..+--.+|..
T Consensus 134 ~~~~~--------~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 134 AFRLA--------RGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp CSCCT--------TCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred hcccC--------CceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 32110 00011111 122233 33346678999999999998866554444433
No 75
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=42.86 E-value=1.1e+02 Score=23.22 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=52.8
Q ss_pred eEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEE-ecCceeEEEEcCCcEEEEeCCC
Q 018985 219 KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 219 ~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia-~G~~~s~~lt~~g~vy~wG~n~ 297 (348)
.--.|...+-+-+..||.|-.-.... +.........+.. .++.|. .-..+-+++..+|+||+--..
T Consensus 9 ~~~~~~~g~~L~I~~dG~V~Gt~~~~-------~~~s~l~~~~v~~-----G~V~I~g~~sg~yL~m~~~G~v~Gs~~~- 75 (132)
T 3q7x_A 9 LLRSTETGQFLRINPDGTVDGTRDRS-------DPGIQFQISPEGN-----GEVLLRSTETGQFLRINPDGTVDGTRDR- 75 (132)
T ss_dssp EEEETTTCCEEEECTTSBEEEECCTT-------CGGGCEEEEEEET-----TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred eeeeccCcEEEEECCCCcEEeecCCC-------CCCcEEEEEeccc-----CEEEEEEEcccEEEEECCCCCEeeccCC-
Confidence 33456666677788899888664321 1111122222221 244443 345567888999999974321
Q ss_pred CCccCCCCCCCeeeeEEeeccccCCCcEEEE-EecCceeEEEecCCcEEE
Q 018985 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRV-SAGDEHVVALDSSGYVSL 346 (348)
Q Consensus 298 ~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i-~~G~~ht~al~~~G~v~~ 346 (348)
.+......+.... . ..+.+ +.-....++++++|++|.
T Consensus 76 ---------s~ec~flE~~~~~-~--g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 76 ---------SDPGIQFQISPEG-N--GEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp ---------CCGGGCEEEEEEE-T--TEEEEEETTTCCEEEECTTSBEEE
T ss_pred ---------CCCceeEEEEeec-C--cEEEEEeccCCeEEEECCCCcCcC
Confidence 1111111111111 1 13333 223345899999999985
No 76
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=41.50 E-value=1.5e+02 Score=24.64 Aligned_cols=77 Identities=9% Similarity=-0.114 Sum_probs=42.7
Q ss_pred CCcEEEEecC---CeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC----eeEEEEcC
Q 018985 111 AGNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN----HAAFVLQS 181 (348)
Q Consensus 111 ~~i~~ia~G~---~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~----h~~~lt~~ 181 (348)
..|..++-.. ...++. .||.|..|-.......... . ...+..........|..++.... ..+..+.|
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG---R-RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS---C-SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc---c-CcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 3477777643 344444 7899999976542211100 0 00111111122347888877643 45566789
Q ss_pred CcEEEEECCC
Q 018985 182 GQVFTCGDNS 191 (348)
Q Consensus 182 G~vy~wG~n~ 191 (348)
|.|+.|-...
T Consensus 134 g~v~iwd~~~ 143 (351)
T 3f3f_A 134 GILRLYDALE 143 (351)
T ss_dssp CEEEEEECSS
T ss_pred CcEEEecCCC
Confidence 9999997654
No 77
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=41.07 E-value=1.4e+02 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=12.8
Q ss_pred CeEEEEECCeEEEEeCC
Q 018985 121 YHTLLISNSSVFSCGSS 137 (348)
Q Consensus 121 ~h~~~l~~G~vy~wG~n 137 (348)
.|++++.+++||.+|-.
T Consensus 141 ~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEEeCC
Confidence 45555588899999964
No 78
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=37.78 E-value=88 Score=27.36 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=12.9
Q ss_pred CceeEEEEcCCcEEEEeC
Q 018985 278 PSYMLAVTGNGVVYSFGS 295 (348)
Q Consensus 278 ~~~s~~lt~~g~vy~wG~ 295 (348)
..|+++. .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4566666 6789999994
No 79
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=37.05 E-value=1.2e+02 Score=24.81 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=7.3
Q ss_pred eeEEEEcCCcEEE
Q 018985 174 HAAFVLQSGQVFT 186 (348)
Q Consensus 174 h~~~lt~~G~vy~ 186 (348)
+.++++.+|++|.
T Consensus 27 ~~i~~~~~g~l~v 39 (270)
T 1rwi_B 27 SGVAVDSAGNVYV 39 (270)
T ss_dssp EEEEECTTCCEEE
T ss_pred cceEECCCCCEEE
Confidence 4455555666655
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=36.68 E-value=1.9e+02 Score=24.18 Aligned_cols=154 Identities=6% Similarity=-0.023 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCe-EEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeec-CCCCcEEEEEecCC--eeEEEEcCCcE
Q 018985 110 SAGNMQITTGRYH-TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSASEN--HAAFVLQSGQV 184 (348)
Q Consensus 110 ~~~i~~ia~G~~h-~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~-~~~~~i~~ia~G~~--h~~~lt~~G~v 184 (348)
...|..++..... .++. .+|.|..|-....... .....+.. .....|..++...+ ..++-..+|.|
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce---------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 3447777765443 4444 8888988876432211 01111111 22336666666543 34444678999
Q ss_pred EEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEe
Q 018985 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (348)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v 262 (348)
+.|-.... .... ...+. .....|..++.. ..+.+.-+.+|.|+.|-..... ....+
T Consensus 122 ~~~d~~~~---------~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~ 179 (337)
T 1gxr_A 122 SIWDLAAP---------TPRI-KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQF 179 (337)
T ss_dssp EEEECCCC-----------EE-EEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEE
T ss_pred EEEECCCC---------Ccce-eeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeee
Confidence 99965431 0001 11111 122345555543 3455556678999999654311 11122
Q ss_pred cCCCCCCCEEEEEecCc--eeEEEEcCCcEEEEeCC
Q 018985 263 APLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 263 ~~~~~~~~v~~Ia~G~~--~s~~lt~~g~vy~wG~n 296 (348)
.... ..|..++...+ ..++...+|.|+.|-..
T Consensus 180 ~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 180 QGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eccc--CceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 2221 36777776533 44455678999999654
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=34.86 E-value=4.1e+02 Score=27.61 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=69.9
Q ss_pred cEEEEEecC-CeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEe--cCCeEEEEEcCCcEEEE
Q 018985 164 HVVQVSASE-NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTC 240 (348)
Q Consensus 164 ~i~~ia~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~w 240 (348)
.|..++... ...++...+|.|+.|-....-. . ..+.. ....|..++. .....+.-+.||.|+.|
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---------~---~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI---------E---RDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTTCC---------C---EEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCCce---------e---EEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 555555443 3445557789999997643110 0 11111 1112333332 22334444567778888
Q ss_pred eCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCce--eEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEee-c
Q 018985 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY--MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ-T 317 (348)
Q Consensus 241 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~--s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~-~ 317 (348)
-......+ ..+... ...|..++...+- .+.-..||.|+.|-..+...+.. ..|.... .
T Consensus 1113 d~~~~~~~-----------~~l~~h--~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~ 1173 (1249)
T 3sfz_A 1113 SFDLLSPL-----------HELKGH--NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEG 1173 (1249)
T ss_dssp CSSSSSCS-----------BCCCCC--SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC----
T ss_pred ECCCccee-----------eeeccC--CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------ecccccccc
Confidence 54321111 011111 1357777765443 33345788899997644222211 0010000 0
Q ss_pred cccCCCcEEEEEecCceeEEEecCCcEEEe
Q 018985 318 FRRKGIHVVRVSAGDEHVVALDSSGYVSLC 347 (348)
Q Consensus 318 ~~~~~~~v~~i~~G~~ht~al~~~G~v~~w 347 (348)
.......|..++...+...+++.+|.|..|
T Consensus 1174 ~~~~~~~v~~l~fs~dg~~l~s~~g~v~vw 1203 (1249)
T 3sfz_A 1174 TATHGGWVTDVCFSPDSKTLVSAGGYLKWW 1203 (1249)
T ss_dssp ---CCSCCCEEEECTTSSCEEEESSSEEEB
T ss_pred ccccCceEEEEEECCCCCEEEECCCeEEEE
Confidence 000122456666555544445556788777
No 82
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=34.73 E-value=2.1e+02 Score=24.10 Aligned_cols=197 Identities=9% Similarity=-0.050 Sum_probs=97.3
Q ss_pred CcEEEEecCC--eEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec--CC-eeEEEEcCCcEE
Q 018985 112 GNMQITTGRY--HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--EN-HAAFVLQSGQVF 185 (348)
Q Consensus 112 ~i~~ia~G~~--h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G--~~-h~~~lt~~G~vy 185 (348)
.|..++-... ..++- .+|.|+.|-..... . ...+... ......|..++.. .. ..++-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------K-NVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------T-EEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------c-cccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3555654432 33333 78888888654221 0 0011111 1222356666554 33 555567789999
Q ss_pred EEEC-CCCCcccCCCCCCceeecEEecc-cCCCceeEEEec-CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEe
Q 018985 186 TCGD-NSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (348)
Q Consensus 186 ~wG~-n~~gqlG~~~~~~~~~~p~~v~~-~~~~~i~~i~~G-~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v 262 (348)
.|-. .. +++ ..+.. .....|..++.- ....+....||.|+.|-...... ........+ +
T Consensus 83 ~wd~~~~-~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~--~ 144 (342)
T 1yfq_A 83 KVDLIGS-PSF------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLN--S 144 (342)
T ss_dssp EECSSSS-SSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESC--S
T ss_pred EEEeccC-Cce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCe--e
Confidence 9965 32 211 11221 012345555543 45566667899999995432100 000000000 1
Q ss_pred cCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecC---ceeEEEe
Q 018985 263 APLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALD 339 (348)
Q Consensus 263 ~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~---~ht~al~ 339 (348)
..+.....|..++...+..++-+.+|.|+.|-....+.. ........ ....|..++... ...++-.
T Consensus 145 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESG--LKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECS--CSSCEEEEEECSGGGCEEEEEE
T ss_pred eEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecC--CCCceeEEEECCCCCCEEEEEe
Confidence 111122478888888888777788999999976541110 01111111 122456655543 3444445
Q ss_pred cCCcEEEe
Q 018985 340 SSGYVSLC 347 (348)
Q Consensus 340 ~~G~v~~w 347 (348)
.+|.|..|
T Consensus 214 ~dg~i~i~ 221 (342)
T 1yfq_A 214 IDGRVAVE 221 (342)
T ss_dssp TTSEEEEE
T ss_pred cCCcEEEE
Confidence 77887776
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=32.58 E-value=2.2e+02 Score=23.82 Aligned_cols=112 Identities=10% Similarity=0.054 Sum_probs=54.2
Q ss_pred ceeEEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecC-ceeEEEEcCCcEEEE
Q 018985 217 PCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSF 293 (348)
Q Consensus 217 ~i~~i~~G~--~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~-~~s~~lt~~g~vy~w 293 (348)
.|..|+.-. ...+.-..||.|..|-..... .+..+.....|..++.-. .+.++...++.|+.|
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iw 282 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------------HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------------EEEEEECSSCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------------eeeeecCCceEEeeecCCCCceeeccCCCEEEEE
Confidence 466665432 334444678889888654321 111111113566655543 345556678899999
Q ss_pred eCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCc--eeEEEecCCcEEEe
Q 018985 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVALDSSGYVSLC 347 (348)
Q Consensus 294 G~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~--ht~al~~~G~v~~w 347 (348)
-......+..-. .+............|..++...+ ..+.-..||.|+.|
T Consensus 283 d~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 283 DLEGKIIVDELK-----QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp ETTTTEEEEEEC-----CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ECCCCeEEEecc-----ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 653321111000 00001111111225777766544 33344589999998
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=31.81 E-value=3.8e+02 Score=26.29 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=80.8
Q ss_pred CcEEEEecC---CeEEEE--ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecC----CeeEEEEcCC
Q 018985 112 GNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQSG 182 (348)
Q Consensus 112 ~i~~ia~G~---~h~~~l--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~----~h~~~lt~~G 182 (348)
.|..++... ...++. .||.|+.|-.... ...+..........|..++... ...+..+.||
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 477777542 233443 8899999964321 0011111122234677777654 3566667889
Q ss_pred cEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---------------CCeEEEEEcCCcEEEEeCCCCCC
Q 018985 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---------------LNFTGFLTIRGHVHTCGSNTHGQ 247 (348)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---------------~~hs~~lt~~G~v~~wG~n~~gq 247 (348)
.|..|-....... .+..+.. ....|..++.. ....+.-..||.|..|-.....+
T Consensus 124 ~I~vwdl~~~~~~----------~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 124 KVSVVEFKENGTT----------SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp EEEEEECCSSSCC----------CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred cEEEEEeecCCCc----------ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 9999976542110 1111111 12235555543 34455566789999996433110
Q ss_pred cCCCCCCCCCCce-EecCCCCCCCEEEEEecCc-----eeEEEEcCCcEEEEeCCC
Q 018985 248 LGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGPS-----YMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 248 LG~~~~~~~~~p~-~v~~~~~~~~v~~Ia~G~~-----~s~~lt~~g~vy~wG~n~ 297 (348)
...+. .+... ...|..++...+ ..+.-..+|.|+.|-...
T Consensus 193 --------~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 193 --------TYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp --------EEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred --------cceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 00111 12221 146888877644 344556789999996544
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=31.15 E-value=2.4e+02 Score=23.76 Aligned_cols=252 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred cceeeeeeccccc----ceeeecccCCcccccccccccccccccccCCCCcEEE--------EecCCeEEEE-ECCeEEE
Q 018985 67 LHSIYAGMSRNVQ----IELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQI--------TTGRYHTLLI-SNSSVFS 133 (348)
Q Consensus 67 ~~~~~~~~g~n~~----g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i--------a~G~~h~~~l-~~G~vy~ 133 (348)
...+.. ..+..+ ..|...+.+..-.+...................|..+ +......+.- .||.|..
T Consensus 65 ~~~v~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 65 AKPIKC-GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp SSCEEE-EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred cCcEEE-EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Q ss_pred EeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEE------ecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeec
Q 018985 134 CGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS------ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRP 207 (348)
Q Consensus 134 wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia------~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p 207 (348)
|-...... .........-.....|..++ ......+.-+.+|.|+.|-... ....
T Consensus 144 wd~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~ 203 (357)
T 3i2n_A 144 WDPRQKDD--------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN------------MALR 203 (357)
T ss_dssp ECTTSCSS--------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT------------TEEE
T ss_pred EeCCCCCC--------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc------------Ccee
Q ss_pred EEecccCCCceeEEEe---cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCc---ee
Q 018985 208 RLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS---YM 281 (348)
Q Consensus 208 ~~v~~~~~~~i~~i~~---G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~---~s 281 (348)
..........-..+.- .....++-+.+|.|+.|-... +................ .|..++...+ ..
T Consensus 204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l 275 (357)
T 3i2n_A 204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT------QHPTKGFASVSEKAHKS--TVWQVRHLPQNRELF 275 (357)
T ss_dssp EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE------EETTTEEEEEEEECCSS--CEEEEEEETTEEEEE
T ss_pred eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC------CCcccceeeeccCCCcC--CEEEEEECCCCCcEE
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCCCCeeee-----EEeeccccCCCcEEEEEecCceeEEE---ecCCcEEEe
Q 018985 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQP-----RAIQTFRRKGIHVVRVSAGDEHVVAL---DSSGYVSLC 347 (348)
Q Consensus 282 ~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P-----~~v~~~~~~~~~v~~i~~G~~ht~al---~~~G~v~~w 347 (348)
+.-..+|.|+.|-.......-.-........ ..+..+......|..++...+...++ ..||.|..|
T Consensus 276 ~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 276 LTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred EEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
No 86
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=29.77 E-value=2.3e+02 Score=23.18 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=11.1
Q ss_pred CeEEEEEcCCcEEEEeC
Q 018985 226 NFTGFLTIRGHVHTCGS 242 (348)
Q Consensus 226 ~hs~~lt~~G~v~~wG~ 242 (348)
-+.++++.+|++|+-..
T Consensus 64 ~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 64 VMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp EEEEEECTTSCEEEEET
T ss_pred ceeEEECCCCCEEEEec
Confidence 35666677777777654
No 87
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=25.31 E-value=2.9e+02 Score=22.92 Aligned_cols=146 Identities=9% Similarity=0.007 Sum_probs=72.1
Q ss_pred CcEEEEecCCe-EEE-E-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC--eeEEEEcCCcEEE
Q 018985 112 GNMQITTGRYH-TLL-I-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFT 186 (348)
Q Consensus 112 ~i~~ia~G~~h-~~~-l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~ 186 (348)
.|..++-.... .++ - .||.|..|....... ...+ ......|..++...+ ..+.-..||.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~------------~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------------EKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------------EEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc------------chhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 36666554332 233 3 789999997532110 1111 112235666665543 3444467899999
Q ss_pred EECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecC
Q 018985 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (348)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~ 264 (348)
|-...... . ..+.. ....|..++.. ....+.-..||.|..|-..... ....+..
T Consensus 92 wd~~~~~~---------~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~ 147 (312)
T 4ery_A 92 WDVSSGKC---------L---KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------CLKTLPA 147 (312)
T ss_dssp EETTTCCE---------E---EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------EEEEECC
T ss_pred EECCCCcE---------E---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------EEEEecC
Confidence 96543110 0 11111 12234444433 2344445678889998643211 1111222
Q ss_pred CCCCCCEEEEEecCc--eeEEEEcCCcEEEEeCC
Q 018985 265 LEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSG 296 (348)
Q Consensus 265 ~~~~~~v~~Ia~G~~--~s~~lt~~g~vy~wG~n 296 (348)
.. ..|..++...+ ..+.-..+|.|..|-..
T Consensus 148 ~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 148 HS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp CS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 11 35666666433 33445578889988653
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=24.94 E-value=3.1e+02 Score=23.05 Aligned_cols=152 Identities=11% Similarity=0.007 Sum_probs=81.1
Q ss_pred CcEEEEEec------CCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEec-ccCCCceeEEEecCC------eEE
Q 018985 163 AHVVQVSAS------ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE-ALKGVPCKQVTAGLN------FTG 229 (348)
Q Consensus 163 ~~i~~ia~G------~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~~~~~~i~~i~~G~~------hs~ 229 (348)
..|..|+.. ....++-..+|.|..|-...... ........ ......|..++-... ..+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 477777765 45577777888999997653211 11111111 112234555554333 455
Q ss_pred EEEcCCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecC---ceeEEEEcCCcEEEEeCCCCCccCCCCC
Q 018985 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (348)
Q Consensus 230 ~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~---~~s~~lt~~g~vy~wG~n~~gqLG~~~~ 306 (348)
+-..||.|..|-.... + ....+... ...|..++... ...+.-..+|.|+.|-.....
T Consensus 90 ~~~~dg~i~v~d~~~~-~----------~~~~~~~~--~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 90 VAGSRGIIRIINPITM-Q----------CIKHYVGH--GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EEETTCEEEEECTTTC-C----------EEEEEESC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred EecCCCEEEEEEchhc-e----------EeeeecCC--CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 5567899999964321 1 11122222 14688887754 344555678999999653311
Q ss_pred CCeeeeEEeeccccCCCcEEEEEecC--ceeEEEecCCcEEEe
Q 018985 307 HDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVSLC 347 (348)
Q Consensus 307 ~~~~~P~~v~~~~~~~~~v~~i~~G~--~ht~al~~~G~v~~w 347 (348)
....+..+......|..++... ...+.-..||.|+.|
T Consensus 150 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 188 (366)
T 3k26_A 150 ----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188 (366)
T ss_dssp ----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEE
Confidence 1112211111233577777543 344445578999888
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=24.90 E-value=3.2e+02 Score=23.14 Aligned_cols=195 Identities=10% Similarity=-0.009 Sum_probs=97.3
Q ss_pred CcEEEEec----CCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCC----eeEEEEcCC
Q 018985 112 GNMQITTG----RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN----HAAFVLQSG 182 (348)
Q Consensus 112 ~i~~ia~G----~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~----h~~~lt~~G 182 (348)
.|..++-. ....+.- .||.|..|-.... ...+..........|..++.... ..+..+.+|
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 47777653 2333333 7899999864321 00111111122346777776543 456667889
Q ss_pred cEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---------------CCeEEEEEcCCcEEEEeCCCCCC
Q 018985 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---------------LNFTGFLTIRGHVHTCGSNTHGQ 247 (348)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---------------~~hs~~lt~~G~v~~wG~n~~gq 247 (348)
.|..|-...... ..+..+. .....|..++.. ....++-+.||.|+.|-.....+
T Consensus 126 ~i~v~d~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 126 KVSVVEFKENGT----------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp EEEEEECCTTSC----------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred cEEEEecCCCCc----------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 999997654211 0111111 112245555543 34555567789999995432110
Q ss_pred cCCCCCCCCCCce-EecCCCCCCCEEEEEecCc-----eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccC
Q 018985 248 LGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGPS-----YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (348)
Q Consensus 248 LG~~~~~~~~~p~-~v~~~~~~~~v~~Ia~G~~-----~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~ 321 (348)
...+. .+... ...|..++...+ ..+....+|.|+.|-...... ... ..+......
T Consensus 195 --------~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~-~~~~~~~~~ 255 (379)
T 3jrp_A 195 --------TYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG--------PWK-KTLLKEEKF 255 (379)
T ss_dssp --------EEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS--------CCE-EEESSSSCC
T ss_pred --------ceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc--------cce-eeeeccccC
Confidence 00111 12221 136778877644 445556789999996543210 001 111111111
Q ss_pred CCcEEEEEecCc--eeEEEecCCcEEEe
Q 018985 322 GIHVVRVSAGDE--HVVALDSSGYVSLC 347 (348)
Q Consensus 322 ~~~v~~i~~G~~--ht~al~~~G~v~~w 347 (348)
...|..++...+ ..++-..||.|+.|
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 224666665433 33444578888887
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=24.56 E-value=3.5e+02 Score=23.56 Aligned_cols=151 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred EEecCCeeEEE---EcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEe---cCCeEEEEEcCCcEEEEe
Q 018985 168 VSASENHAAFV---LQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCG 241 (348)
Q Consensus 168 ia~G~~h~~~l---t~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~---G~~hs~~lt~~G~v~~wG 241 (348)
+++......++ ..+|.|+.|-....+++ ..+.....-....|..++. .....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV---------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEEC---------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCC---------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Q ss_pred CCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCc---eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeecc
Q 018985 242 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (348)
Q Consensus 242 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~---~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~ 318 (348)
....+... ....|...-.... ..|..++...+ ..+.-..||.|+.|-.... ..+..+
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~ 170 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHT-KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLTL 170 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCS-SCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEEE
T ss_pred ccCCCCcc-----ccCCceEEecCCC-CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEEE
Q ss_pred --ccCCCcEEEEEe--cCceeEEEecCCcEEEe
Q 018985 319 --RRKGIHVVRVSA--GDEHVVALDSSGYVSLC 347 (348)
Q Consensus 319 --~~~~~~v~~i~~--G~~ht~al~~~G~v~~w 347 (348)
......|..++. .+...+.-..||.|+.|
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
No 91
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=24.32 E-value=2.4e+02 Score=21.55 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=35.3
Q ss_pred CEEEEEe-cCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEE-ecCceeEEEecCCcEEE
Q 018985 270 SVVQIAA-GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS-AGDEHVVALDSSGYVSL 346 (348)
Q Consensus 270 ~v~~Ia~-G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~-~G~~ht~al~~~G~v~~ 346 (348)
.++.|.+ ...+-+++..+|+||+--..+ .. .....+.... . ..+.+. .-....++++++|++|.
T Consensus 51 G~V~I~gv~sg~yL~m~~~G~v~Gs~~~~---------~e-c~flE~~~e~--~-g~v~i~~~~sg~Ylamnk~Grl~G 116 (143)
T 3snv_A 51 GEVLLKSTETGQYLRINPDGTVDGTRDRS---------DT-HIQFQISPEG--N-GEVLLKSTETGQYLRINPDGTVDG 116 (143)
T ss_dssp TEEEEEETTTTEEEEECTTSBEEEECCTT---------CT-TSEEEEEECS--T-TEEEEEETTTCCEEEECTTSBEEE
T ss_pred CeEEEEEEcccEEEeECCCCCEeecccCC---------Cc-ceEEEEEecC--C-cEEEEEEeeCCEEEEEcCCCcCcC
Confidence 3555544 567788999999999753211 11 1122222211 1 222232 23347899999999874
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=24.15 E-value=3.8e+02 Score=23.80 Aligned_cols=109 Identities=8% Similarity=0.056 Sum_probs=67.1
Q ss_pred CcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcCCcEEEE
Q 018985 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTC 240 (348)
Q Consensus 163 ~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~w 240 (348)
..|..++......+.-+.||.|+.|-......+ ..+.. ....|..++.. ....+.-+.||.|+.|
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------------~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------------YILSG-HTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------------EEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------------EEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 367777777777777888999999975431110 11111 12345555543 3455566778999999
Q ss_pred eCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCC
Q 018985 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 241 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~ 297 (348)
-... ++ ....+... ...|..++....+.+.-..||.|..|-...
T Consensus 338 d~~~-~~----------~~~~~~~h--~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 338 DLEN-GE----------LMYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp ETTT-TE----------EEEEECCC--SSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred ECCC-Cc----------EEEEEeCC--CCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 6532 11 11122222 146888888878888888999999997654
No 93
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=24.00 E-value=3e+02 Score=22.55 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=9.1
Q ss_pred eeEEEEcCCcEEEEEC
Q 018985 174 HAAFVLQSGQVFTCGD 189 (348)
Q Consensus 174 h~~~lt~~G~vy~wG~ 189 (348)
+.++++.+|++|....
T Consensus 124 ~~i~~~~~g~l~v~~~ 139 (286)
T 1q7f_A 124 RGVTVDNKGRIIVVEC 139 (286)
T ss_dssp EEEEECTTSCEEEEET
T ss_pred eEEEEeCCCCEEEEEC
Confidence 3455566666666543
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=22.96 E-value=25 Score=33.54 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=24.7
Q ss_pred cccccCChHHHHHHHhhCCCC-chhhhhhcccccccc
Q 018985 8 FSIEELPSHLIFEILTSGRLS-AVDLAHLELTSKTFG 43 (348)
Q Consensus 8 ~~~~~lP~~~~~~i~~~~~l~-~~~l~~l~~t~~~~~ 43 (348)
+.+.+||+|++.+|| .+|+ ..|+.....+|+.+.
T Consensus 4 d~~~~LPdevL~~If--~~L~~~~d~~~~s~vck~W~ 38 (594)
T 2p1m_B 4 RIALSFPEEVLEHVF--SFIQLDKDRNSVSLVCKSWY 38 (594)
T ss_dssp ------CHHHHHHHH--HTCCCHHHHHHHHTSCHHHH
T ss_pred cchhhCCHHHHHHHH--hhcCCchhHHHHHHHHHHHH
Confidence 346799999999999 8999 889888888887654
No 95
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.74 E-value=5.7e+02 Score=25.35 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=68.0
Q ss_pred EecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEEEEEcCCcEEEEeCCCCC
Q 018985 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHG 246 (348)
Q Consensus 169 a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~g 246 (348)
+...++.+++|+.|++|.--...-... .+ .. ......+..-.+.+|+.+... ..+.++.|++|.+.-.-..++-
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~~-~~-~G--~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~ 586 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPSA-RG-QG--EPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 586 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCCC-C------CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred ecCCCEEEEEecCCcEEEEEeeecccc-cc-cC--eeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc
Confidence 344567888899999999876553321 00 00 111112222246678877765 3456777888988766543321
Q ss_pred CcCCCCCCCCCCceEecCCCCCCCEEEE---EecCceeEEEEcCCcEEEEeCCCCCccC
Q 018985 247 QLGHGDTLDRPTPKSIAPLEEVGSVVQI---AAGPSYMLAVTGNGVVYSFGSGSNFCLG 302 (348)
Q Consensus 247 qLG~~~~~~~~~p~~v~~~~~~~~v~~I---a~G~~~s~~lt~~g~vy~wG~n~~gqLG 302 (348)
. ....-...-.+.+...++.+ ..+..+.+++|++|++..+-...--.+|
T Consensus 587 ~-------~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 587 A-------RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp C-------CSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred c-------cCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 1 11112222223222233332 2467889999999999998776543333
No 96
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=21.80 E-value=3.8e+02 Score=22.97 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=64.5
Q ss_pred CcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecC---------CeEEEEEc
Q 018985 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL---------NFTGFLTI 233 (348)
Q Consensus 163 ~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---------~hs~~lt~ 233 (348)
..|..|+......+.-..||.|+.|-..... ..........+.. ....|..++--. ...+....
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLD------NENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCT------TCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcc------cccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcC
Confidence 3788888877666677889999999865421 0000111112221 223455555432 34444567
Q ss_pred CCcEEEEeCCCCCCcCCCCCCCCCCceEecCCCC---CCCEEEEEec------Cce-eEEEEcCCcEEEEeCCC
Q 018985 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE---VGSVVQIAAG------PSY-MLAVTGNGVVYSFGSGS 297 (348)
Q Consensus 234 ~G~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~---~~~v~~Ia~G------~~~-s~~lt~~g~vy~wG~n~ 297 (348)
+|.|+.|-...... ........+..... ...|..++.. ..+ .++-..+|.|+.|-...
T Consensus 90 dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 90 SGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 89999996433110 00001222332210 1367777665 333 44456889999996543
No 97
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=21.68 E-value=4.5e+02 Score=23.73 Aligned_cols=170 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred cEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEec---------CCeeEEEEcCC
Q 018985 113 NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---------ENHAAFVLQSG 182 (348)
Q Consensus 113 i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G---------~~h~~~lt~~G 182 (348)
+..|..|...-+++ .||+...-.+....+.-++.... .-..+.......+..|..+ .-+.++++.||
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~---~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTD---YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEE---EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCC---EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Q ss_pred c-EEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCCceE
Q 018985 183 Q-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (348)
Q Consensus 183 ~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~~p~~ 261 (348)
+ +|..-....+.+..-+.......-+. .+.+. ..-...|..-.++++.||++........|.+ .........|..
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI--~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~ 224 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRML--DVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-EITHTEVFHPED 224 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEE--ECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCC-EEEECCCCSCTT
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEE--ECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeE-EEeecceecccc
Q ss_pred ecCCCCCCCEEEEEecCceeEEEEcCCcEEEE
Q 018985 262 IAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293 (348)
Q Consensus 262 v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~w 293 (348)
...+... .......+.++++.+|+||+.
T Consensus 225 ~~~~~~~----~~~~~dG~~~~vs~~g~V~v~ 252 (386)
T 3sjl_D 225 EFLINHP----AYSQKAGRLVWPTYTGKIHQI 252 (386)
T ss_dssp SCBCSCC----EEETTTTEEEEEBTTSEEEEE
T ss_pred ccccccc----eeEcCCCcEEEEeCCCEEEEE
No 98
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=21.38 E-value=4e+02 Score=23.02 Aligned_cols=146 Identities=12% Similarity=0.010 Sum_probs=72.4
Q ss_pred CcEEEEEecCCe---eEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec--CCeEE-EEEcCCc
Q 018985 163 AHVVQVSASENH---AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTG-FLTIRGH 236 (348)
Q Consensus 163 ~~i~~ia~G~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~-~lt~~G~ 236 (348)
..|..++..... .+.-..||.|..|-....-. .... .....+..+..++.- ..+.+ .-..||.
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---------~~~~--~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---------ASQI--GCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---------EEEC--C----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccce---------eeee--ecceeeccceeeeecCCCCcceEEeccCCc
Confidence 367777765432 23346789999996432111 1000 001122234555542 22233 3467899
Q ss_pred EEEEeCCCCCCcCCCCCCCCCCceEecCCCCCCCEEEEEecCc---eeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeE
Q 018985 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (348)
Q Consensus 237 v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~v~~Ia~G~~---~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~ 313 (348)
|..|=... ++ ....+.... ..|..|+...+ +.+.-..||.|+.|-... +++
T Consensus 239 v~~wd~~~-~~----------~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~------------ 292 (344)
T 4gqb_B 239 VSLVDTKS-TS----------CVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SEL------------ 292 (344)
T ss_dssp EEEEESCC-------------CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEE------------
T ss_pred EEEEECCC-Cc----------EEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcE------------
Confidence 99995432 11 111222222 36888887543 333456899999994322 111
Q ss_pred EeeccccCCCcEEEEEecC-ceeEEE--ecCCcEEEe
Q 018985 314 AIQTFRRKGIHVVRVSAGD-EHVVAL--DSSGYVSLC 347 (348)
Q Consensus 314 ~v~~~~~~~~~v~~i~~G~-~ht~al--~~~G~v~~w 347 (348)
+....+ ...|..|+... ...++. ..||+|..|
T Consensus 293 -~~~~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 293 -FRSQAH-RDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp -EEECCC-SSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred -EEEcCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 111111 22577777643 223332 368999888
No 99
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=21.33 E-value=3.6e+02 Score=22.52 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=9.5
Q ss_pred ceeEEEecCCcE
Q 018985 333 EHVVALDSSGYV 344 (348)
Q Consensus 333 ~ht~al~~~G~v 344 (348)
...+.++.+|+|
T Consensus 244 ~~~~~~~~~g~~ 255 (276)
T 3no2_A 244 PQLVEIDSEGKV 255 (276)
T ss_dssp CSEEEECTTSBE
T ss_pred ceEEEECCCCCE
Confidence 357888889987
No 100
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.84 E-value=4.3e+02 Score=24.15 Aligned_cols=84 Identities=6% Similarity=-0.059 Sum_probs=45.1
Q ss_pred EEeecCCCCcEEEEEecCCeeEEEEcCCc-EEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEec---------
Q 018985 155 TRINFPSAAHVVQVSASENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--------- 224 (348)
Q Consensus 155 ~~v~~~~~~~i~~ia~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--------- 224 (348)
..+.......+..|..|....++++.||+ ||..-.. ......+.. ...-..+..-....+..|..+
T Consensus 102 sVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~-~~~~~~G~~---~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 102 FVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTV-FERIARGKR---TDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEE-EEETTEEEE---EEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred EEEECCCCEEEEEEECCCCCceEECCCCCEEEEEecc-ccccccCCC---CCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 34445555567788888888899999886 6664210 000000000 011112222223345566654
Q ss_pred CCeEEEEEcCC-cEEEEeC
Q 018985 225 LNFTGFLTIRG-HVHTCGS 242 (348)
Q Consensus 225 ~~hs~~lt~~G-~v~~wG~ 242 (348)
.-|.++++.|| .+|+.-.
T Consensus 178 ~P~~~~~spDGk~lyV~n~ 196 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQF 196 (426)
T ss_dssp CGGGSEECTTSSEEEEEEC
T ss_pred CcceEEEcCCCCEEEEEec
Confidence 45788999888 5777643
Done!