Query 018987
Match_columns 348
No_of_seqs 143 out of 1546
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 09:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 32.2 1.2E+02 0.0086 24.4 17.5 25 152-177 61-85 (447)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 17.9 1.8E+02 0.013 22.1 7.2 60 74-137 4-63 (248)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 16.9 44 0.0032 15.5 1.9 18 152-169 3-20 (27)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 8.1 4.9E+02 0.036 20.9 20.1 79 114-196 244-323 (383)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 7.8 94 0.0069 19.6 2.0 20 282-301 27-46 (91)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 6.3 4.4E+02 0.032 18.7 6.6 50 244-293 60-109 (199)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 4.7 2.7E+02 0.02 17.4 3.0 21 280-300 36-56 (100)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.3 4.6E+02 0.033 16.5 3.2 19 281-299 43-61 (107)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 2.8 4E+02 0.029 13.2 3.0 18 151-168 18-35 (37)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 2.7 1E+03 0.076 17.8 18.8 9 4-12 148-156 (447)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=32.24 E-value=1.2e+02 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018987 152 LGSVLSLLAVLTTCVAQIMTNTIQKK 177 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~~~~~~~ 177 (348)
.|.+... ..+.+++......++.++
T Consensus 61 ~g~~~s~-~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 61 LGFALSG-ISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444332 334444555555555553
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=17.88 E-value=1.8e+02 Score=22.14 Aligned_cols=60 Identities=12% Similarity=-0.107 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhh
Q 018987 74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLV 137 (348)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~ 137 (348)
|+.+++++.++..+.....+..-+-..+. ...+.+.++.++++.+|.-+.|++.=++++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l 63 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGM 63 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHH
Confidence 56677777776666655555554444433 2346667778888998888887776443333
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.91 E-value=44 Score=15.48 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 018987 152 LGSVLSLLAVLTTCVAQI 169 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v 169 (348)
+|.+..-++.+.||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577788888888887754
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.07 E-value=4.9e+02 Score=20.89 Aligned_cols=79 Identities=10% Similarity=-0.071 Sum_probs=34.3
Q ss_pred HHHHHhhccccchhhHHHHHHHhhhhheeeccccccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHH
Q 018987 114 LLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 192 (348)
Q Consensus 114 i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~ 192 (348)
++...+.++|.+......-. +.|++-+.....-.+ +...+.+.++++..-....+.|+..| -.|+..........
T Consensus 244 ~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vHg~~ 319 (383)
T d1u7ga_ 244 IFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVHGVC 319 (383)
T ss_dssp HHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc--cccccceEeehhhh
Confidence 33333456667666544322 334444333222223 33466665555443333333332223 23555555554444
Q ss_pred HHHH
Q 018987 193 QALT 196 (348)
Q Consensus 193 ~~~~ 196 (348)
+...
T Consensus 320 Gi~G 323 (383)
T d1u7ga_ 320 GIVG 323 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.77 E-value=94 Score=19.57 Aligned_cols=20 Identities=20% Similarity=-0.066 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHhhhccccc
Q 018987 282 GILIAVIGMVLYSYCCSLES 301 (348)
Q Consensus 282 G~~li~~g~~l~~~~~~~~~ 301 (348)
...+.+.|.+.|...|.|++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHhhheeeecc
Confidence 34456666677766666543
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.25 E-value=4.4e+02 Score=18.65 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=30.4
Q ss_pred hcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018987 244 IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 244 i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~ 293 (348)
.+...+.....+...-.+...+....+++.+++.....+..+.+...+-+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 34444334444444444555555667788899988888777666655544
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.74 E-value=2.7e+02 Score=17.40 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHhhhcccc
Q 018987 280 ILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 280 ~~G~~li~~g~~l~~~~~~~~ 300 (348)
..++.+++.+...|...+.|+
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 334445566666666555443
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.30 E-value=4.6e+02 Score=16.51 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHhhhccc
Q 018987 281 LGILIAVIGMVLYSYCCSL 299 (348)
Q Consensus 281 ~G~~li~~g~~l~~~~~~~ 299 (348)
.++.+.+.|...|...+.|
T Consensus 43 ~~I~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3444455566666555543
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.83 E-value=4e+02 Score=13.21 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 018987 151 VLGSVLSLLAVLTTCVAQ 168 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~ 168 (348)
.+|.++.+.-++.++-|.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 357777777777776654
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.68 E-value=1e+03 Score=17.81 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=3.8
Q ss_pred ccchhHHHH
Q 018987 4 GQKFQLGTV 12 (348)
Q Consensus 4 ~~~~~~~~~ 12 (348)
++|.+....
T Consensus 148 ~~r~~~~~~ 156 (447)
T d1pw4a_ 148 KERGGIVSV 156 (447)
T ss_dssp THHHHHHHH
T ss_pred hcccccccc
Confidence 444444333
Done!