BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018989
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 153/251 (60%), Gaps = 8/251 (3%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEGYGSDLVVSDAQVF 132
G ++ HG+ ++RV++ EFF L EEK+K+A +A +I+GYGS L + +
Sbjct: 77 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 133 DWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 192
+W F +P +R L++WP+ P ++ E +EYA L+ + + KA++ L LE
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 196
Query: 193 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 250
+ G ++ L+Q++ N+YP C +P+L GV+ HTD S +T +L + V GLQ+ +GK
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGK 255
Query: 251 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI--G 308
W +P ++V+++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLK 314
Query: 309 PVDQLIDEQRP 319
P+ +++ + P
Sbjct: 315 PLPEMVSVESP 325
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 153/251 (60%), Gaps = 8/251 (3%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEGYGSDLVVSDAQVF 132
G ++ HG+ ++RV++ EFF L EEK+K+A +A +I+GYGS L + +
Sbjct: 78 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 133 DWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 192
+W F +P +R L++WP+ P ++ E +EYA L+ + + KA++ L LE
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 197
Query: 193 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 250
+ G ++ L+Q++ N+YP C +P+L GV+ HTD S +T +L + V GLQ+ +GK
Sbjct: 198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGK 256
Query: 251 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI--G 308
W +P ++V+++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I
Sbjct: 257 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLK 315
Query: 309 PVDQLIDEQRP 319
P+ +++ + P
Sbjct: 316 PLPEMVSVESP 326
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%), Gaps = 6/237 (2%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEGYGSDLVVSDAQVF 132
G ++ HG+ +RV++ EFF L EEK+K+A +A +I+GYGS L + +
Sbjct: 78 GVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 133 DWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 192
+W F +P +R L++WP+ P ++ E +EYA L+ + + KA++ L LE
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 197
Query: 193 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 250
+ G ++ L+Q + N+YP C +P+L GV+ HTD S +T +L + V GLQ+ +GK
Sbjct: 198 LEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX-VPGLQLFYEGK 256
Query: 251 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI 307
W +P ++V ++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I
Sbjct: 257 WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKI 312
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 145/274 (52%), Gaps = 10/274 (3%)
Query: 46 FPVIDMSLFSSQEHVGTXXXXXXXXXXXAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAE 105
FP+I + + E T G F++V HG+ D V + ++ E
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENW-GFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 106 EKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILN 165
++ K A +EG ++ V+D DW FL+ P+ ++ P E+ E+
Sbjct: 63 QRFKELVASKALEGVQAE--VTDX---DWESTFFLKHLPISN--ISEVPDLDEEYREVXR 115
Query: 166 EYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQF-GDQA-LMQVRFNFYPPCSRPDLVHGVK 223
++A +L+ + E L + ++L LE+ N F G + + + YPPC +PDL+ G++
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLR 175
Query: 224 PHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHR 283
HTD GI +L QD +V GLQ+ DG+W VP H++VVNLGDQ++++TNG YKS HR
Sbjct: 176 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHR 235
Query: 284 VVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQ 317
V+ + R S+A+F P + I P L++++
Sbjct: 236 VIAQKDGARXSLASFYNPGSDAVIYPAPALVEKE 269
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 21/234 (8%)
Query: 84 MSDSFLDRVR-----EVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRL 138
+SD LD+ R + A FF LP E K+++A GY V + + +
Sbjct: 38 LSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHYDLKE 97
Query: 139 FLR----VFPVHRRRL----NLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEE 190
F + P HR R N+WP P F ++ L + +AIA L LE
Sbjct: 98 FWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLER 157
Query: 191 YSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKP--HTDRSGITILLQDREVEGLQI-RV 247
F D + +R YPP P GV+ H D + IT+LL E GL++
Sbjct: 158 DFFKPTVQDGNSV-LRLLHYPPI--PKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDR 213
Query: 248 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEP 301
DG+W + P LV+N+GD ++ +TN + S +HRVV N R + ++ P
Sbjct: 214 DGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRGVPRYSTP 266
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 25/214 (11%)
Query: 144 PVHRRRLNLWPQHP--PEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG-DQ 200
P H +N+WP P F + +Y + ++ L K A +L EE F F D
Sbjct: 122 PTHE--VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 201 ALMQV---RFNF---YPPCSRPDLVHGVK----PHTDRSGITILLQDREVEGLQIRVDGK 250
L V R+ + YP + G K H D S IT+L Q V+ LQ+
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAG 238
Query: 251 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRV-VTNTEKLRISIAAFTEPEPENEIGP 309
+ + ++N G M +TN YK+P+HRV N E R S+ F ++ I P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDP 296
Query: 310 VDQLIDEQRPKLYRNVRNYGAINYECYQKGLVAL 343
D E K R +YG + Q GLV+L
Sbjct: 297 FDPR--EPNGKSDREPLSYG----DYLQNGLVSL 324
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 25/214 (11%)
Query: 144 PVHRRRLNLWPQHP--PEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG-DQ 200
P H +N+WP P F + +Y + ++ L K A +L EE F F D
Sbjct: 122 PTHE--VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 201 ALMQV---RFNF---YPPCSRPDLVHGVK----PHTDRSGITILLQDREVEGLQIRVDGK 250
L V R+ + YP + G K H D S IT+L Q V+ LQ+
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAG 238
Query: 251 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRV-VTNTEKLRISIAAFTEPEPENEIGP 309
+ + ++N G M +TN YK+P+HRV N E R S+ F ++ I P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDP 296
Query: 310 VDQLIDEQRPKLYRNVRNYGAINYECYQKGLVAL 343
D E K R +YG + Q GLV+L
Sbjct: 297 FDPR--EPNGKSDREPLSYG----DYLQNGLVSL 324
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 205 VRFNFYPPCSRPDLVHGVKP--HTDRSGITILLQDREVEGLQIRV-DGKWYRVPVIPHAL 261
+R YPP + + ++ H D + IT+L E GLQ++ DG W VP +
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNI 210
Query: 262 VVNLGDQMQIMTNGIYKSPMHRVV----TNTEKLRISIAAFTEPEP 303
++N+GD +Q ++G + S HRV+ T+ K RIS+ F P P
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP 256
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGYGSDLVV 126
G F + G++D+ L +++ ++FF+ +E +++ R +E + +
Sbjct: 30 GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 127 SDAQVFDW--CHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
+ D+ C+ + NL+P +F I +Y + T + +++ + +
Sbjct: 90 NTGSYSDYSMCYSM--------GTADNLFPSG--DFERIWTQYFDRQYTASRAVAREVLR 139
Query: 185 SLNLEEYSFLNQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREV 240
+ E + F D + +RF ++P S + + PH D S +T++ Q
Sbjct: 140 ATGTEPDGGVEAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCA 198
Query: 241 EG---LQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 285
G LQ V G + +P P A++V G ++T G K+P H V
Sbjct: 199 NGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGYGSDLVV 126
G F + G++D+ L +++ ++FF+ +E +++ R +E + +
Sbjct: 30 GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 127 SDAQVFDW--CHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
+ D+ C+ + NL+P +F I +Y + T + +++ + +
Sbjct: 90 NTGSYSDYSMCYSMGTAD--------NLFPSG--DFERIWTQYFDRQYTASRAVAREVLR 139
Query: 185 SLNLEEYSFLNQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREV 240
+ E + F D + +RF ++P S + + PH D S +T++ Q
Sbjct: 140 ATGTEPDGGVEAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCA 198
Query: 241 EG---LQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 285
G LQ V G + +P P A++V G ++T G K+P H V
Sbjct: 199 NGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGYGSDLVV 126
G F + G++D+ L +++ ++FF+ +E +++ R +E + +
Sbjct: 30 GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 127 SDAQVFDW--CHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
+ D+ C+ + NL+P +F I +Y + T + +++ + +
Sbjct: 90 NTGSYSDYSMCYSM--------GTADNLFPSG--DFERIWTQYFDRQYTASRAVAREVLR 139
Query: 185 SLNLEEYSFLNQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREV 240
+ E + F D + +RF ++P S + + PH D S +T++ Q
Sbjct: 140 ATGTEPDGGVEAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCA 198
Query: 241 EG---LQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 285
G LQ V G + +P P A++V G ++T G K+P H V
Sbjct: 199 NGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGYGSDLVV 126
G F + G++D+ L +++ ++FF+ +E +++ R +E + +
Sbjct: 30 GLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 127 SDAQVFDW--CHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
+ D+ C+ + NL+P +F I +Y + T + +++ + +
Sbjct: 90 NTGSYSDYSMCYSMGTAD--------NLFPSG--DFERIWTQYFDRQYTASRAVAREVLR 139
Query: 185 SLNLEEYSFLNQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREV 240
+ E + F D + +RF ++P S + + PH D S +T++ Q
Sbjct: 140 ATGTEPDGGVEAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCA 198
Query: 241 EG---LQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 285
G LQ V G + +P P A++V G ++T G K+P H V
Sbjct: 199 NGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGYGSDLVV 126
G F + G++D+ L +++ ++FF+ +E +++ R +E + +
Sbjct: 50 GLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 109
Query: 127 SDAQVFDW--CHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
+ D+ C+ + NL+P +F I +Y + T + +++ + +
Sbjct: 110 NTGSYSDYSMCYSMGTAD--------NLFPSG--DFERIWTQYFDRQYTASRAVAREVLR 159
Query: 185 SLNLEEYSFLNQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREV 240
+ E + F D + +RF ++P S + + PH D S +T++ Q
Sbjct: 160 ATGTEPDGGVEAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCA 218
Query: 241 EG---LQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 285
G LQ V G + +P P A++V G ++T G K+P H V
Sbjct: 219 NGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 266
>pdb|2X1X|E Chain E, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|A Chain A, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|B Chain B, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|C Chain C, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|D Chain D, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 110
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 247 VDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSP 280
+D +W + +P + +++G + + TN +K P
Sbjct: 11 IDNEWRKTQCMPREVAIDVGKEFGVATNTFFKPP 44
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 87 SFLDRVREVAVEFFQLPAEEKQKHARAV-NEIEGYGSDLV-------------VSDAQVF 132
S +D++ E + +F P EEK KHA A + + +++ V DA+
Sbjct: 96 SVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESN 155
Query: 133 DWCHRLFLR-VFPVHRRRLNLWP 154
C RL L+ + P +RL +P
Sbjct: 156 PLCRRLQLKDIIPTQMQRLTKYP 178
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 139 FLRVFPVHRRRLNL------WPQ------HPPEFSE-ILNEYAMKL---KTVTEVLSKAI 182
F ++FP R+R+ P+ +P +F E + + M L + E+ +
Sbjct: 170 FFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCPRPEIDEIFTSYH 229
Query: 183 AKSLNLEEYSFLNQFGDQALMQVRFN--FYPPCSRPDLVHGVKPHTDRSGITILLQDREV 240
AK+ L +F +Q R N +PP +RPD V G+ + SGI
Sbjct: 230 AKAKPYMTKEHLTKFINQKQRDSRLNSLLFPP-ARPDQVQGLIDKYEPSGINAQRGQLSP 288
Query: 241 EGL 243
EG+
Sbjct: 289 EGM 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,570,784
Number of Sequences: 62578
Number of extensions: 372110
Number of successful extensions: 865
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 19
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)