BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018990
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 147 YRGVARHHHNGRWEARIGRVFGN-KYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDL 205
YRGV R G++ A I N ++LGT+ T E+AA AYDRAA RG A+ NF L
Sbjct: 3 YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 45 YRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXXXXLKYWGHD 104
YRGV + W G++ A + D K G +V+LG ++ E + G
Sbjct: 3 YRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSR 54
Query: 105 TILNFPL 111
+LNFPL
Sbjct: 55 ALLNFPL 61
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 147 YRGVARHHHNGRWEARIGRVFGN-KYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDL 205
YRGV R G++ A I N ++LGT+ T E+AA AYDRAA RG A+ NF L
Sbjct: 6 YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 45 YRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEXXXXXXXXXXLKYWGHD 104
YRGV + W G++ A + D K G +V+LG ++ E + G
Sbjct: 6 YRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSR 57
Query: 105 TILNFPL 111
+LNFPL
Sbjct: 58 ALLNFPL 64
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 152 RHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYD 188
RH + E IGR+ GN L LG Y +++ +AYD
Sbjct: 59 RHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYD 95
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 152 RHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYD 188
RH + E IGR+ GN L LG Y +++ +AYD
Sbjct: 60 RHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYD 96
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 152 RHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYD 188
RH + E IGR+ GN L LG Y +++ +AYD
Sbjct: 59 RHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYD 95
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 152 RHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYD 188
RH + E IGR+ GN L LG Y +++ +AYD
Sbjct: 59 RHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYD 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,655,452
Number of Sequences: 62578
Number of extensions: 308044
Number of successful extensions: 506
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 9
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)