Query 018990
Match_columns 348
No_of_seqs 367 out of 1976
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 1.6E-18 3.5E-23 129.7 7.0 61 43-112 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 2.2E-18 4.8E-23 130.4 7.6 63 44-115 1-63 (64)
3 smart00380 AP2 DNA-binding dom 99.7 1.2E-17 2.6E-22 126.4 6.0 63 146-209 1-63 (64)
4 cd00018 AP2 DNA-binding domain 99.7 1.7E-17 3.7E-22 124.1 6.1 61 145-206 1-61 (61)
5 PHA00280 putative NHN endonucl 99.5 3.3E-14 7.3E-19 120.4 6.6 78 18-106 42-119 (121)
6 PHA00280 putative NHN endonucl 99.4 8.4E-13 1.8E-17 111.9 8.3 104 90-200 12-119 (121)
7 PF00847 AP2: AP2 domain; Int 99.1 1.9E-10 4.1E-15 84.1 5.9 56 43-103 1-56 (56)
8 PF00847 AP2: AP2 domain; Int 99.0 6.7E-10 1.4E-14 81.2 5.5 53 145-197 1-56 (56)
9 cd04518 TBP_archaea archaeal T 65.8 65 0.0014 29.1 9.8 133 43-194 34-171 (174)
10 PF14657 Integrase_AP2: AP2-li 54.9 34 0.00073 23.7 4.7 38 158-195 1-42 (46)
11 PF14657 Integrase_AP2: AP2-li 52.4 41 0.00088 23.3 4.8 25 76-100 17-41 (46)
12 cd00652 TBP_TLF TATA box bindi 50.1 1.4E+02 0.0029 26.9 9.1 134 43-193 34-171 (174)
13 cd04517 TLF TBP-like factors ( 48.8 1.4E+02 0.003 27.0 8.9 131 44-191 35-169 (174)
14 PRK00394 transcription factor; 46.8 1.3E+02 0.0029 27.2 8.5 135 43-195 33-173 (179)
15 PF08471 Ribonuc_red_2_N: Clas 34.6 39 0.00086 27.6 2.8 21 80-100 70-90 (93)
16 PRK10545 nucleotide excision r 34.4 54 0.0012 32.0 4.2 24 77-100 140-163 (286)
17 PLN00062 TATA-box-binding prot 32.5 2.8E+02 0.0062 25.1 8.3 132 43-193 34-170 (179)
18 PF08846 DUF1816: Domain of un 29.7 82 0.0018 24.3 3.7 32 158-189 9-40 (68)
19 PF08471 Ribonuc_red_2_N: Clas 28.5 61 0.0013 26.5 2.9 21 174-194 70-90 (93)
20 PF05036 SPOR: Sporulation rel 28.3 42 0.00091 24.5 1.9 21 77-97 45-65 (76)
21 PRK10927 essential cell divisi 26.6 3E+02 0.0065 27.4 7.8 21 171-191 285-305 (319)
22 COG3087 FtsN Cell division pro 26.3 1.9E+02 0.0042 28.0 6.3 20 171-190 230-249 (264)
23 PF12286 DUF3622: Protein of u 21.7 96 0.0021 24.1 2.7 32 155-186 14-49 (71)
24 PF11379 DUF3182: Protein of u 21.2 73 0.0016 32.0 2.5 28 179-206 246-275 (355)
25 cd04516 TBP_eukaryotes eukaryo 20.5 6.2E+02 0.013 22.8 8.2 131 43-190 34-167 (174)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.76 E-value=1.6e-18 Score=129.73 Aligned_cols=61 Identities=51% Similarity=0.903 Sum_probs=56.3
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCc
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLS 112 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~ 112 (348)
|+|+||+++++ |+|+|+|+.+ ..|++++||+|+|+||||+|||.++++++|..+.+|||.+
T Consensus 1 s~~~GV~~~~~-gkw~A~I~~~--------~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPW-GKWVAEIRDP--------SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCC-CcEEEEEEeC--------CCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 68999999998 9999999754 3489999999999999999999999999999999999963
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.75 E-value=2.2e-18 Score=130.37 Aligned_cols=63 Identities=49% Similarity=0.913 Sum_probs=58.5
Q ss_pred CeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCcchh
Q 018990 44 IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYE 115 (348)
Q Consensus 44 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~~y~ 115 (348)
+|+||+++++ |||+|+|+.+ .+|++++||+|+|+||||+|||.++++++|..+.+|||.+.|+
T Consensus 1 ~~kGV~~~~~-gkw~A~I~~~--------~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPW-GKWVAEIRDP--------SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCC-CeEEEEEEec--------CCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 5999999887 9999999864 4799999999999999999999999999999999999998875
No 3
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.71 E-value=1.2e-17 Score=126.38 Aligned_cols=63 Identities=49% Similarity=0.727 Sum_probs=58.2
Q ss_pred ccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccccCCCchhhh
Q 018990 146 KYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLSKYI 209 (348)
Q Consensus 146 ~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~~NF~~~~y~ 209 (348)
+|+||++ +++|+|+|+|+.+.+++.++||+|+|+||||.|||.++++++|..+.+|||++.|.
T Consensus 1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 5899986 56799999999666899999999999999999999999999999999999998874
No 4
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.70 E-value=1.7e-17 Score=124.14 Aligned_cols=61 Identities=52% Similarity=0.803 Sum_probs=55.0
Q ss_pred cccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccccCCCch
Q 018990 145 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAVTNFDLS 206 (348)
Q Consensus 145 S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~~NF~~~ 206 (348)
|+|+||++++ +|+|+|+|+....+++++||+|+|+||||.|||.++++++|..+.+|||++
T Consensus 1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899998665 599999999544589999999999999999999999999999999999863
No 5
>PHA00280 putative NHN endonuclease
Probab=99.50 E-value=3.3e-14 Score=120.43 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHH
Q 018990 18 NNNTVTTKTKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAA 97 (348)
Q Consensus 18 ~~~~~~~k~~~~r~~~~r~~~~~~sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa 97 (348)
+.-.+++-..+......+...+.++|+|+||+|++..|||+|+| .++||+++||.|+++|+|+.||+ ++
T Consensus 42 nri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I----------~~~gK~~~lG~f~~~e~A~~a~~-~~ 110 (121)
T PHA00280 42 DALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTV----------TAEGKQHNFRSRDLLEVVAWIYR-TR 110 (121)
T ss_pred CcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEE----------EECCEEEEcCCCCCHHHHHHHHH-HH
Confidence 33446677777777777777888999999999999999999999 48899999999999999999997 78
Q ss_pred HhhcCCccc
Q 018990 98 LKYWGHDTI 106 (348)
Q Consensus 98 ~~~~G~~a~ 106 (348)
.+++|.++.
T Consensus 111 ~~lhGeFa~ 119 (121)
T PHA00280 111 RELHGQFAR 119 (121)
T ss_pred HHHhhcccc
Confidence 899998774
No 6
>PHA00280 putative NHN endonuclease
Probab=99.40 E-value=8.4e-13 Score=111.93 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCCccc---cCCCC-cchhHHHHHhhccchhhhhcccccccCCccCCccccccccccccCceeeeeecc
Q 018990 90 ARAYDLAALKYWGHDTI---LNFPL-SNYEEELVEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGR 165 (348)
Q Consensus 90 A~AYD~aa~~~~G~~a~---~NFp~-~~y~~el~~l~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~ 165 (348)
-+++-.+...++|+-.. +.+.. ...+..+..|..++..+.....+.. ++++|+|+||+|++..|||+|+|+
T Consensus 12 ~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I~- 86 (121)
T PHA00280 12 PRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTVT- 86 (121)
T ss_pred hhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEEE-
Confidence 34566677777886431 22211 1223456777777877776665433 477899999999999999999998
Q ss_pred ccCCeEEeecCCCCHHHHHHHHHHHHHHhcCCccc
Q 018990 166 VFGNKYLYLGTYATQEEAAQAYDRAAIEYRGLNAV 200 (348)
Q Consensus 166 ~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~G~~a~ 200 (348)
.+||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus 87 -~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 87 -AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred -ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 8999999999999999999997 67899998764
No 7
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.09 E-value=1.9e-10 Score=84.13 Aligned_cols=56 Identities=30% Similarity=0.390 Sum_probs=46.9
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCC
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGH 103 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~ 103 (348)
|+|+||+|++..++|+|+|++.. .. . .+|.++||.|+++++|++|++.++++++|.
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~---~~-g-~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWS---EN-G-KRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECC---CT-T-EEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcc---cC-c-ccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999997631 10 0 139999999999999999999999999874
No 8
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.00 E-value=6.7e-10 Score=81.24 Aligned_cols=53 Identities=34% Similarity=0.499 Sum_probs=46.5
Q ss_pred cccccccccccCceeeeeecccc-C--CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 018990 145 SKYRGVARHHHNGRWEARIGRVF-G--NKYLYLGTYATQEEAAQAYDRAAIEYRGL 197 (348)
Q Consensus 145 S~yrGV~~~~~~gkW~A~I~~~~-~--~k~~~LGtf~t~eeAA~AYD~aa~~~~G~ 197 (348)
|+|+||++++..++|+|+|++.. + +++++||.|++++||++|++.++++++|.
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999998532 1 48999999999999999999999999874
No 9
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=65.77 E-value=65 Score=29.10 Aligned_cols=133 Identities=13% Similarity=0.127 Sum_probs=76.0
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccc----cCCCCcchhHHH
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTI----LNFPLSNYEEEL 118 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~----~NFp~~~y~~el 118 (348)
.+|.||..+-..-+-.+.|| ..||-+--| ..++++|..|-++.+..+....-. .+|...+.-..
T Consensus 34 ~~fpgli~Rl~~Pk~t~lIF----------~SGKiv~tG-aks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas- 101 (174)
T cd04518 34 DQFPGLVYRLEDPKIAALIF----------RSGKMVCTG-AKSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVAS- 101 (174)
T ss_pred CcCcEEEEEccCCcEEEEEE----------CCCeEEEEc-cCCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEE-
Confidence 56899998887777888887 457776666 468889999988887766432211 11111100000
Q ss_pred HHh-hccchhhhhcccccccCCccCCccccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 018990 119 VEM-EGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEY 194 (348)
Q Consensus 119 ~~l-~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~~ 194 (348)
..+ ..+..+.+...++ . -.-...+|.|+.++-..-+=..-|- ..||-+..|. .++||+.+|.+.....+
T Consensus 102 ~~l~~~i~L~~la~~~~-~---~~YePe~fpglvyR~~~pk~~~lIF--~SGKvvitGa-ks~~~~~~a~~~i~~~l 171 (174)
T cd04518 102 ADLGREVNLDAIAIGLP-N---AEYEPEQFPGLVYRLDEPKVVLLLF--SSGKMVITGA-KSEEDAKRAVEKLLSRL 171 (174)
T ss_pred EEcCCccCHHHHHhhCC-C---CccCcccCceEEEEecCCcEEEEEe--CCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 000 0111122211222 1 1233467899965544445556663 5667666665 67889999988766554
No 10
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=54.89 E-value=34 Score=23.73 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=27.2
Q ss_pred eeeeeec--cccCC--eEEeecCCCCHHHHHHHHHHHHHHhc
Q 018990 158 RWEARIG--RVFGN--KYLYLGTYATQEEAAQAYDRAAIEYR 195 (348)
Q Consensus 158 kW~A~I~--~~~~~--k~~~LGtf~t~eeAA~AYD~aa~~~~ 195 (348)
+|..+|. ++..| ++++-+-|.|..||-.+.......+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 4766762 33344 46888899999999999887766553
No 11
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=52.42 E-value=41 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=20.8
Q ss_pred cEEecccCCCHHHHHHHHHHHHHhh
Q 018990 76 RQVYLGAYDNEEAAARAYDLAALKY 100 (348)
Q Consensus 76 k~i~LG~f~teeeAA~AYD~aa~~~ 100 (348)
++++-+-|.|..||-.+...+...+
T Consensus 17 k~~~k~GF~TkkeA~~~~~~~~~~~ 41 (46)
T PF14657_consen 17 KQKTKRGFKTKKEAEKALAKIEAEL 41 (46)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 6678899999999999988766554
No 12
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=50.08 E-value=1.4e+02 Score=26.93 Aligned_cols=134 Identities=18% Similarity=0.106 Sum_probs=73.6
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhc--CCcc--ccCCCCcchhHHH
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYW--GHDT--ILNFPLSNYEEEL 118 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~--G~~a--~~NFp~~~y~~el 118 (348)
.+|.||..+...-+-.+.|| ..||-+--|. .++|+|..|.++.+..+. |-.. ..||....--...
T Consensus 34 e~fpgli~R~~~P~~t~lIf----------~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~ 102 (174)
T cd00652 34 KRFPGVIMRLREPKTTALIF----------SSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASC 102 (174)
T ss_pred CccceEEEEcCCCcEEEEEE----------CCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEE
Confidence 57999998887778888887 4577766675 567888888888877663 3211 1222211000000
Q ss_pred HHhhccchhhhhcccccccCCccCCccccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHH
Q 018990 119 VEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIE 193 (348)
Q Consensus 119 ~~l~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~ 193 (348)
.---.+..+.+....+... .-....|.|+.++-..-+=..-|- ..||-+..|. .+++|+.+|++.-...
T Consensus 103 ~l~~~i~L~~la~~~~~~~---~YePe~fpgli~r~~~pk~t~lIF--~sGkvvitGa-ks~~~~~~a~~~i~~~ 171 (174)
T cd00652 103 DLGFPIRLEELALKHPENA---SYEPELFPGLIYRMDEPKVVLLIF--VSGKIVITGA-KSREDIYEAVEKIYPI 171 (174)
T ss_pred ECCCcccHHHHHhhhhccc---EECCccCceEEEEecCCcEEEEEE--cCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 0000111111111122111 123457889865544445555553 5677666665 6788899888765433
No 13
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=48.83 E-value=1.4e+02 Score=26.95 Aligned_cols=131 Identities=21% Similarity=0.143 Sum_probs=71.1
Q ss_pred CeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhc--CCcc--ccCCCCcchhHHHH
Q 018990 44 IYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYW--GHDT--ILNFPLSNYEEELV 119 (348)
Q Consensus 44 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~--G~~a--~~NFp~~~y~~el~ 119 (348)
+|.||..+-..-+-.+.|| ..||-+--| ..++|+|.+|.++.+..+. |-.. ..||....--....
T Consensus 35 ~fpgli~R~~~Pk~t~lIF----------~sGKiviTG-aks~~~~~~a~~~~~~~l~~~g~~~~~~~~f~v~nIvat~~ 103 (174)
T cd04517 35 RYPKVTMRLREPRATASVW----------SSGKITITG-ATSEEEAKQAARRAARLLQKLGFKVVRFSNFRVVNVLATCS 103 (174)
T ss_pred CCCEEEEEecCCcEEEEEE----------CCCeEEEEc-cCCHHHHHHHHHHHHHHHHHcCCCcccCCceEEEEEEEEEe
Confidence 7999999887778888887 456766555 5789999999988877663 2111 12222111000000
Q ss_pred HhhccchhhhhcccccccCCccCCccccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHH
Q 018990 120 EMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAA 191 (348)
Q Consensus 120 ~l~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa 191 (348)
---.+..+++...-.+.. .-....|.||.++-..-+=...|- ..|+-+..|. .+++|+..|++.-.
T Consensus 104 ~~~~i~L~~la~~~~~~~---~YePE~fPgliyr~~~p~~t~lIF--~sGkivitGa-ks~~~~~~a~~~i~ 169 (174)
T cd04517 104 MPFPIRLDELAAKNRSSA---SYEPELHPGVVYRITGPRATLSIF--STGSVTVTGA-RSMEDVREAVEKIY 169 (174)
T ss_pred CCCcccHHHHHHhchhhc---EeCCccCCEEEEEECCCcEEEEEe--CCCEEEEEec-CCHHHHHHHHHHHH
Confidence 000011111111001111 123457889865544434445553 5667666665 67888888876543
No 14
>PRK00394 transcription factor; Reviewed
Probab=46.80 E-value=1.3e+02 Score=27.18 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccc----cCCCCcchhHHH
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTI----LNFPLSNYEEEL 118 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~----~NFp~~~y~~el 118 (348)
.+|-||..+-..-+-.+.|| ..||-+--|.. ++++|..|-++.+..+....-. .+|...+.-..
T Consensus 33 e~fpgli~Rl~~Pk~t~lIf----------~sGKiv~tGa~-S~~~a~~a~~~~~~~l~~~g~~~~~~~~~~i~NiVas- 100 (179)
T PRK00394 33 EQFPGLVYRLEDPKIAALIF----------RSGKVVCTGAK-SVEDLHEAVKIIIKKLKELGIKVIDEPEIKVQNIVAS- 100 (179)
T ss_pred ccCceEEEEecCCceEEEEE----------cCCcEEEEccC-CHHHHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEE-
Confidence 36889998888778888887 55787777865 5678888888776665322111 11111100000
Q ss_pred HHh-hccchhhhhccc-ccccCCccCCccccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 018990 119 VEM-EGQSKEEYIGSL-RRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIEYR 195 (348)
Q Consensus 119 ~~l-~~~s~eE~i~sL-Rr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~~~ 195 (348)
..+ ..+..+.+...+ .+. -.-....|.|+.++-..-|=..-|- ..||-+..|. .++||+..|.+.....+.
T Consensus 101 ~~l~~~i~L~~la~~~~~~~---~~YePe~fPglvyR~~~pk~~~lIF--~SGKvvitGa-ks~~~~~~a~~~i~~~l~ 173 (179)
T PRK00394 101 ADLGVELNLNAIAIGLGLEN---IEYEPEQFPGLVYRLDDPKVVVLLF--GSGKLVITGA-KSEEDAEKAVEKILEKLE 173 (179)
T ss_pred EEcCCeEcHHHHHHhcCcCC---cEECcccCceEEEEecCCcEEEEEE--cCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 000 011111221111 011 1223467899966555556666664 5677666665 678899999887765553
No 15
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=34.64 E-value=39 Score=27.61 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=18.2
Q ss_pred cccCCCHHHHHHHHHHHHHhh
Q 018990 80 LGAYDNEEAAARAYDLAALKY 100 (348)
Q Consensus 80 LG~f~teeeAA~AYD~aa~~~ 100 (348)
-|+|+|+|+|..-||..+-.|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 399999999999999887654
No 16
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=34.36 E-value=54 Score=32.01 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEecccCCCHHHHHHHHHHHHHhh
Q 018990 77 QVYLGAYDNEEAAARAYDLAALKY 100 (348)
Q Consensus 77 ~i~LG~f~teeeAA~AYD~aa~~~ 100 (348)
..++|.|.+..+|-++-...+..+
T Consensus 140 ~~~~GpF~s~~~a~~~L~~l~~~f 163 (286)
T PRK10545 140 PNLFGLFANRRAALQALQSIADEQ 163 (286)
T ss_pred CcEEEEECCHHHHHHHHHHHHHHH
Confidence 468999999999999998888876
No 17
>PLN00062 TATA-box-binding protein; Provisional
Probab=32.49 E-value=2.8e+02 Score=25.10 Aligned_cols=132 Identities=15% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCCCCcchhH-HHHHh
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNFPLSNYEE-ELVEM 121 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NFp~~~y~~-el~~l 121 (348)
.+|-||..+-..-+=.+.|| ..||-+--| ..++|+|..|.++.+..+....-..+|+ ++.. .+-..
T Consensus 34 e~fpgli~Rl~~Pk~t~lIF----------~SGKiviTG-aks~e~a~~a~~~~~~~L~~lg~~~~~~--~f~v~NIvas 100 (179)
T PLN00062 34 KRFAAVIMRIREPKTTALIF----------ASGKMVCTG-AKSEHDSKLAARKYARIIQKLGFPAKFK--DFKIQNIVGS 100 (179)
T ss_pred ccCcEEEEEeCCCcEEEEEE----------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHcCCCcCCC--ccEEEEEEEE
Confidence 36899998887778888887 446766556 4688999999888877763322122221 1110 00000
Q ss_pred h----ccchhhhhcccccccCCccCCccccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHHHHH
Q 018990 122 E----GQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRAAIE 193 (348)
Q Consensus 122 ~----~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~aa~~ 193 (348)
- .+..+.+...-+... .-....|.|+.++-..-+=..-| ...||-+..|. .+++|+..|.+.-.-.
T Consensus 101 ~~l~~~i~L~~la~~~~~~~---~YePE~fPgliyr~~~pk~~~li--F~sGkvvitGa-ks~~~~~~ai~~i~p~ 170 (179)
T PLN00062 101 CDVKFPIRLEGLAYAHGAFS---SYEPELFPGLIYRMKQPKIVLLI--FVSGKIVITGA-KVREEIYTAFENIYPV 170 (179)
T ss_pred EECCCcccHHHHHHhchhhc---ccCcccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 0 011111111001111 23346788886544333434444 35677676665 5678888887654433
No 18
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=29.70 E-value=82 Score=24.29 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=24.3
Q ss_pred eeeeeeccccCCeEEeecCCCCHHHHHHHHHH
Q 018990 158 RWEARIGRVFGNKYLYLGTYATQEEAAQAYDR 189 (348)
Q Consensus 158 kW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~ 189 (348)
.|=++|..-.-....|.|-|.+.+||..+.-.
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~g 40 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPG 40 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhcc
Confidence 46677763344578999999999999987543
No 19
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=28.52 E-value=61 Score=26.53 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.1
Q ss_pred ecCCCCHHHHHHHHHHHHHHh
Q 018990 174 LGTYATQEEAAQAYDRAAIEY 194 (348)
Q Consensus 174 LGtf~t~eeAA~AYD~aa~~~ 194 (348)
-|+|+|+|||..=||..+..|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 689999999999999876654
No 20
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=28.27 E-value=42 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=14.5
Q ss_pred EEecccCCCHHHHHHHHHHHH
Q 018990 77 QVYLGAYDNEEAAARAYDLAA 97 (348)
Q Consensus 77 ~i~LG~f~teeeAA~AYD~aa 97 (348)
+|.+|.|++.++|..+-....
T Consensus 45 rV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 45 RVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEECCECTCCHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466788888888777765444
No 21
>PRK10927 essential cell division protein FtsN; Provisional
Probab=26.58 E-value=3e+02 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.9
Q ss_pred EEeecCCCCHHHHHHHHHHHH
Q 018990 171 YLYLGTYATQEEAAQAYDRAA 191 (348)
Q Consensus 171 ~~~LGtf~t~eeAA~AYD~aa 191 (348)
||.||-|.+.++|.++.++..
T Consensus 285 RVrVGPf~sr~eAe~a~~rLk 305 (319)
T PRK10927 285 RVVIGPVKGKENADSTLNRLK 305 (319)
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999977654
No 22
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=26.30 E-value=1.9e+02 Score=27.98 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.6
Q ss_pred EEeecCCCCHHHHHHHHHHH
Q 018990 171 YLYLGTYATQEEAAQAYDRA 190 (348)
Q Consensus 171 ~~~LGtf~t~eeAA~AYD~a 190 (348)
|+.||-|.+.++|..|-++.
T Consensus 230 RV~vGP~n~~~~a~~aq~rL 249 (264)
T COG3087 230 RVRVGPFNSKADAVKAQKRL 249 (264)
T ss_pred EEEecCCCcHHHHHHHHHHH
Confidence 56799999999999986654
No 23
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=21.73 E-value=96 Score=24.10 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=21.2
Q ss_pred cCceeeeeeccccCC-eEEee---cCCCCHHHHHHH
Q 018990 155 HNGRWEARIGRVFGN-KYLYL---GTYATQEEAAQA 186 (348)
Q Consensus 155 ~~gkW~A~I~~~~~~-k~~~L---Gtf~t~eeAA~A 186 (348)
..+.|.|+|.+-... +.+.. -.|++++||..-
T Consensus 14 ~~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~W 49 (71)
T PF12286_consen 14 KRNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQAW 49 (71)
T ss_pred cCCceeeeeeeeecCceeEEEecccCcccHHHHHHH
Confidence 557899999764443 33222 469999997644
No 24
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.15 E-value=73 Score=32.04 Aligned_cols=28 Identities=39% Similarity=0.489 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHhc-CCcc-ccCCCch
Q 018990 179 TQEEAAQAYDRAAIEYR-GLNA-VTNFDLS 206 (348)
Q Consensus 179 t~eeAA~AYD~aa~~~~-G~~a-~~NF~~~ 206 (348)
.+-+.|++||.|+...+ |..| ++|||+.
T Consensus 246 ~AV~qA~~Yd~Aa~~~yPgf~ASRRNYDVa 275 (355)
T PF11379_consen 246 LAVEQARAYDAAAQACYPGFFASRRNYDVA 275 (355)
T ss_pred HHHHHHHHHHHHHHHhCchhheeeccceee
Confidence 35678999999998887 7777 8899984
No 25
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.53 E-value=6.2e+02 Score=22.76 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCeEEeEEcCCCCeeEEEEecCcccccccccCCcEEecccCCCHHHHHHHHHHHHHhhcCCccccCC---CCcchhHHHH
Q 018990 43 SIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAARAYDLAALKYWGHDTILNF---PLSNYEEELV 119 (348)
Q Consensus 43 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~i~LG~f~teeeAA~AYD~aa~~~~G~~a~~NF---p~~~y~~el~ 119 (348)
.+|-||..+-..-+-.+.|| ..||-+--|. .++|+|..|.++.+..+....-..+| .....-....
T Consensus 34 e~fpgli~Rl~~Pk~t~lIF----------~SGKiviTGa-ks~e~a~~a~~~i~~~L~~~g~~~~~~~~~v~Nivat~~ 102 (174)
T cd04516 34 KRFAAVIMRIREPKTTALIF----------SSGKMVCTGA-KSEDDSKLAARKYARIIQKLGFPAKFTDFKIQNIVGSCD 102 (174)
T ss_pred ccCcEEEEEeCCCcEEEEEE----------CCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEEEEEE
Confidence 46889998888778888887 4577766675 56788888888887766322211122 2110000000
Q ss_pred HhhccchhhhhcccccccCCccCCccccccccccccCceeeeeeccccCCeEEeecCCCCHHHHHHHHHHH
Q 018990 120 EMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAQAYDRA 190 (348)
Q Consensus 120 ~l~~~s~eE~i~sLRr~s~g~~~~~S~yrGV~~~~~~gkW~A~I~~~~~~k~~~LGtf~t~eeAA~AYD~a 190 (348)
--..+..+++....+. .-.-....|.|+.++-.. +.+.+--...||-+.+|. .+.+|+..|++.-
T Consensus 103 l~~~i~L~~la~~~~~---~~~YePE~fPgliyr~~~--pk~~~liF~sGkvvitGa-ks~~~~~~a~~~i 167 (174)
T cd04516 103 VKFPIRLEGLAHAHKQ---FSSYEPELFPGLIYRMVK--PKIVLLIFVSGKIVLTGA-KSREEIYQAFENI 167 (174)
T ss_pred CCCcccHHHHHHhChh---ccEeCCccCceEEEEecC--CcEEEEEeCCCEEEEEec-CCHHHHHHHHHHH
Confidence 0000111111110011 112234678898654333 333333235677666665 5778888887643
Done!