BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018993
(348 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JNC2|R3HD2_BOVIN R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1
Length = 989
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 24/159 (15%)
Query: 24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
FLV L+ NPR R+ +L++E +I F+ + + Q F+ FP TSY R+ HRV+ ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213
Query: 81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
++ ++ G +++ KT+ ++ P R SE ++ E + I +R +A
Sbjct: 214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASM 264
Query: 141 VNGANETGTKRSPV------RSVEERKEEYDRARARIFS 173
N+ R P+ +S+EER+EEY R R RIF+
Sbjct: 265 DRDDNQI---RVPLQDGRRSKSIEEREEEYQRVRERIFA 300
>sp|Q9DCB4|ARP21_MOUSE cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1
SV=2
Length = 807
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 28/230 (12%)
Query: 24 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
FL+ L+N R R+ +L+ME ++ F+ + + + +F +SY R+ HRV+ ++GL
Sbjct: 151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-- 207
Query: 83 MVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNA 138
++ ++ G +++ KT+ ++ P R E + ++SEES K L++ +I + N
Sbjct: 208 ---DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQ 264
Query: 139 GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTL---TQVSTDMKNIG 195
++ + +RS +S+EER+EEY R R RIF+ S + E +++ DM
Sbjct: 265 NRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDSVCSQESLFLDNSRLQEDMHICN 320
Query: 196 FNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSY 245
+R++ R + RD +G + + E + PD+ R++
Sbjct: 321 ETYKKRQLFR----------AHRDSSGRTSGSRQSSSETELRWPDHQRAW 360
>sp|Q80TM6|R3HD2_MOUSE R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2
Length = 1044
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 24/159 (15%)
Query: 24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
FLV L+ NPR R+ +L++E +I F+ + + Q F+ FP TSY R+ HRV+ ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213
Query: 81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGC 140
++ ++ G +++ KT+ ++ P R SE ++ E + I +R +A
Sbjct: 214 -----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASM 264
Query: 141 VNGANETGTKRSPV------RSVEERKEEYDRARARIFS 173
N+ R P+ +S+EER+EEY R R RIF+
Sbjct: 265 DRDDNQM---RVPLQDGRRSKSIEEREEEYQRVRERIFA 300
>sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3
Length = 1099
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 24 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
FLV L+N PR R+ +L++E +I F+ N + +F TSY R+ HRV+ ++GL
Sbjct: 156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-- 212
Query: 83 MVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCV 141
++ ++ G ++V KT+ ++ P + +E + DK E K I +R N+
Sbjct: 213 ---DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFD 264
Query: 142 NGANE-----TGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGF 196
N+ +RS +S+EER+EEY RAR RIFS S + E+ + ++
Sbjct: 265 KDDNQMRIRLKDDRRS--KSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASS 322
Query: 197 NRDEREIVR 205
+ R+I R
Sbjct: 323 TQQRRQIFR 331
>sp|Q9UBL0|ARP21_HUMAN cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1
SV=2
Length = 812
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 114/233 (48%), Gaps = 33/233 (14%)
Query: 24 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVT 82
FL+ L+N R R+ +L+ME +I F+ + + + +F +SY R+ HRV+ ++GL
Sbjct: 152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGL-- 208
Query: 83 MVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCV 141
++ ++ G +++ KT+ ++ P R E + ++ EES K I +R N+ +
Sbjct: 209 ---DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNS-SI 259
Query: 142 NGANETGTKRSPVR------SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIG 195
+ + + P R S+EER+EEY R R RIF+ S + E + S +++
Sbjct: 260 DKEDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENSRLLEDSN 319
Query: 196 FNRD---EREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSY 245
+ +R++ R + RDG+G + + E + D+ R++
Sbjct: 320 ICNETYKKRQLFRGN----------RDGSGRTSGSRQSSSENELKWSDHQRAW 362
>sp|Q9Y2K5|R3HD2_HUMAN R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3
Length = 976
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Query: 24 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
FLV L+ NPR R+ +L++E +I F+ + + Q F+ FP TSY R+ HRV+ ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 213
Query: 81 VTMVQENGIEGLGNRILVRKTAESKYPAVRLSE 113
++ ++ G +++ KT+ ++ P R SE
Sbjct: 214 -----DHNVDQTGKAVIINKTSNTRIPEQRFSE 241
>sp|Q8MSX1|ENC_DROME Protein encore OS=Drosophila melanogaster GN=enc PE=1 SV=2
Length = 1818
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 37/158 (23%)
Query: 30 QNPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP-TSYLRLAAHRVSQHYGLVTMVQENG 88
+NP+ R +L++E D+ F+Q + + E++ P +SY R+ HR + +G+ V
Sbjct: 439 KNPKDRNILLKIEKDLIDFVQE-NSRGCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTET 497
Query: 89 IEGLGNRILVRKTAESKYPAVRLSEI---PAKQS---EESDKLEKIK-------IAIRRR 135
+ ++V ++ P +R + A++S ++ ++++ +++ R+
Sbjct: 498 QQ----CVIVAVAKNTRIPEIRFQSLVRDDARKSILKRDTHSFDEVRQSPYLCPLSLDRK 553
Query: 136 PNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFS 173
+S EER+E+YDRAR+RIFS
Sbjct: 554 ------------------AKSFEEREEDYDRARSRIFS 573
>sp|B3MSG8|RTEL1_DROAN Regulator of telomere elongation helicase 1 homolog OS=Drosophila
ananassae GN=GF20802 PE=3 SV=1
Length = 994
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 132 IRRRPNAGCV-NGANETGTKRSPVRSVEERK-EEYDRARARIFSGPSSPNSEDTLTQVST 189
I+R P + ANET K S++ ++Y A R G S+PN+ D ++++ +
Sbjct: 784 IKREPGSNATFKAANETAIKVEMANSIKSWSPDDYACAAGRKLGGSSAPNAMDFMSRLDS 843
Query: 190 DMKNIGFN 197
++ +I FN
Sbjct: 844 NVSSIDFN 851
>sp|Q2KI04|SZRD1_BOVIN SUZ domain-containing protein 1 OS=Bos taurus GN=SZRD1 PE=2 SV=2
Length = 152
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 129 KIAIRRRPNA-GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSE 181
+I I +RP + G V+G N PV+S+ +R+ EY AR RI G +SP E
Sbjct: 59 QIRILKRPTSNGVVSGPNSASRPALPVKSLAQREAEYAEARKRIL-GSASPEEE 111
>sp|Q08849|STX3_RAT Syntaxin-3 OS=Rattus norvegicus GN=Stx3 PE=2 SV=1
Length = 289
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 110 RLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNG-ANETGTKRSPVRSVEERKEEYDRAR 168
RL ++ AKQ + D ++++IAI N ++ +E R + + E EE +
Sbjct: 4 RLEQLKAKQLTQDDDTDEVEIAI---DNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLY 60
Query: 169 ARIFSGPS-SPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKII---SIRDGAGL 223
+ I S P P ++D L Q++T++K N VRN + EK I +R A L
Sbjct: 61 SIILSAPIPEPKTKDDLEQLTTEIKKRANN------VRNKLKSMEKHIEEDEVRSSADL 113
>sp|Q64704|STX3_MOUSE Syntaxin-3 OS=Mus musculus GN=Stx3 PE=2 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 110 RLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNG-ANETGTKRSPVRSVEERKEEYDRAR 168
RL ++ AKQ + D ++++IAI N ++ +E R + + E EE +
Sbjct: 4 RLEQLKAKQLTQDDDTDEVEIAI---DNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLY 60
Query: 169 ARIFSGPS-SPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKII---SIRDGAGL 223
+ I S P P ++D L Q++T++K N VRN + EK I +R A L
Sbjct: 61 SIILSAPIPEPKTKDDLEQLTTEIKKRANN------VRNKLKSMEKHIEEDEVRSSADL 113
>sp|Q7Z422|SZRD1_HUMAN SUZ domain-containing protein 1 OS=Homo sapiens GN=SZRD1 PE=1 SV=1
Length = 152
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 129 KIAIRRRPNA-GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSE 181
+I I +RP + G V+ N T PV+S+ +R+ EY AR RI G +SP E
Sbjct: 59 QIRILKRPTSNGVVSSPNSTSRPTLPVKSLAQREAEYAEARKRIL-GSASPEEE 111
>sp|Q5RE12|SZRD1_PONAB SUZ domain-containing protein 1 OS=Pongo abelii GN=SZRD1 PE=2 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 129 KIAIRRRPNA-GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSE 181
+I I +RP + G V+ N T PV+S+ +R+ EY AR RI G +SP E
Sbjct: 59 QIRILKRPTSNGVVSSPNSTSRPTLPVKSLAQREAEYAEARKRIL-GSASPEEE 111
>sp|Q13277|STX3_HUMAN Syntaxin-3 OS=Homo sapiens GN=STX3 PE=1 SV=3
Length = 289
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 110 RLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNG-ANETGTKRSPVRSVEERKEEYDRAR 168
RL ++ AKQ + D + ++IAI N ++ +E R + + E EE +
Sbjct: 4 RLEQLKAKQLTQDDDTDAVEIAI---DNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLY 60
Query: 169 ARIFSGPS-SPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKII---SIRDGAGL 223
+ I S P P ++D L Q++T++K N VRN + EK I +R A L
Sbjct: 61 SIILSAPIPEPKTKDDLEQLTTEIKKRANN------VRNKLKSMEKHIEEDEVRSSADL 113
>sp|Q5XIA2|SZRD1_RAT SUZ domain-containing protein 1 OS=Rattus norvegicus GN=Szrd1 PE=2
SV=2
Length = 152
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 129 KIAIRRRPNA-GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSE 181
+I I +RP + G V+ N T PV+S+ +R+ EY AR RI G +SP E
Sbjct: 59 QIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRIL-GSASPEEE 111
>sp|Q6NXN1|SZRD1_MOUSE SUZ domain-containing protein 1 OS=Mus musculus GN=Szrd1 PE=1 SV=1
Length = 152
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 129 KIAIRRRPNA-GCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSE 181
+I I +RP + G V+ N T PV+S+ +R+ EY AR RI G +SP E
Sbjct: 59 QIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRIL-GSASPEEE 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,444,692
Number of Sequences: 539616
Number of extensions: 4994405
Number of successful extensions: 13179
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13152
Number of HSP's gapped (non-prelim): 56
length of query: 348
length of database: 191,569,459
effective HSP length: 118
effective length of query: 230
effective length of database: 127,894,771
effective search space: 29415797330
effective search space used: 29415797330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)