Query 018993
Match_columns 348
No_of_seqs 152 out of 199
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 100.0 2.1E-33 7.2E-38 239.8 11.7 114 14-137 8-122 (124)
2 1msz_A DNA-binding protein smu 98.5 1.1E-07 3.9E-12 76.5 6.1 64 37-104 17-80 (86)
3 2cpm_A Sperm-associated antige 98.0 1.3E-05 4.3E-10 65.3 7.8 63 37-102 12-74 (94)
4 1ug8_A Poly(A)-specific ribonu 97.0 0.0021 7.3E-08 51.8 7.4 44 32-76 7-50 (87)
5 3gku_A Probable RNA-binding pr 83.0 2.2 7.4E-05 39.5 6.4 59 37-100 149-208 (225)
6 3d45_A Poly(A)-specific ribonu 65.4 1.3 4.4E-05 44.9 0.0 44 32-76 170-213 (507)
7 2a1r_A Poly(A)-specific ribonu 60.8 1.8 6E-05 43.1 0.0 43 33-76 176-218 (430)
8 3f3b_A Phage-like element PBSX 20.6 4.1 0.00014 34.7 -4.4 19 65-84 2-20 (126)
9 2lw9_A Unconventionnal myosin- 20.3 37 0.0013 24.6 1.2 43 37-81 7-49 (51)
10 3e11_A Predicted zincin-like m 19.5 38 0.0013 27.8 1.3 17 67-83 91-107 (114)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=100.00 E-value=2.1e-33 Score=239.76 Aligned_cols=114 Identities=29% Similarity=0.515 Sum_probs=101.5
Q ss_pred hccCCCCchHHHHHHhc-CchhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCC
Q 018993 14 VNERESMVDPFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGL 92 (348)
Q Consensus 14 ~~~~~~~vd~~L~eAL~-npkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs 92 (348)
.+..+.+||+||++||+ |||||++||+||++|++||+++.++.++|+|| |||+||||||||+||||+|.+ |+.
T Consensus 8 ~d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~~~ef~pm-nSy~RllvHrvAe~ygL~h~~-----d~~ 81 (124)
T 1whr_A 8 TDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNV-----DQT 81 (124)
T ss_dssp SCCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCC-CHHHHHHHHHHHHHHTCCEEE-----CSS
T ss_pred ccCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCccceECCCC-CHHHHHHHHHHHHHhCcCccc-----cCC
Confidence 46688899999999995 99999999999999999999999889999999 999999999999999999976 345
Q ss_pred ccEEEEEecCCCCCCcccccccccCCcCcCchhhhhhhhhccCCC
Q 018993 93 GNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPN 137 (348)
Q Consensus 93 ~~~Ivv~KT~~triP~vrLsdl~~~~~~~s~~~~~~K~~ImkR~~ 137 (348)
+++|+|+||++||+|.++|+|+++... ..+.++..|+||++
T Consensus 82 ~r~VvV~Kt~~tr~P~~~lse~~~~~~----~~~~~~~~vl~r~~ 122 (124)
T 1whr_A 82 GKAVIINKTSNTRIPEQRFSEHIKDEK----NTEFQQRFILSGPS 122 (124)
T ss_dssp CSSEEEECCTTCCCCSCCGGGTSCSCS----CCCCCCSSCCCCCC
T ss_pred CCEEEEEeCCCCCCChHHHHHHhcccc----cccchheeeEecCC
Confidence 688999999999999999999996432 23356778999975
No 2
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=98.53 E-value=1.1e-07 Score=76.49 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEecCCC
Q 018993 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAES 104 (348)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT~~t 104 (348)
..++++..|..|+.+ +...++|||..++++|++||.||+-|||.|.... +|....|+|.|...+
T Consensus 17 ~~~~i~~~l~~F~~~-~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G---~G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 17 GVDHFRAMIVEFMAS-KKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSG---EGKRRFITVSKRAGS 80 (86)
T ss_dssp CCHHHHHHHHHHHHH-TCSEEEECTTCCSHHHHHHHHHHHHTTEEEEEEC---SSSCCEEEEEECC--
T ss_pred hHHHHHHHHHHHhcC-CCcEEEcCCCCCHHHHHHHHHHHHHcCCCcceee---CCCCeEEEEEEeCCc
Confidence 456799999999954 5578999994499999999999999999999875 456678999988654
No 3
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.3e-05 Score=65.29 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCccEEEEEecC
Q 018993 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTA 102 (348)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~h~v~d~~~Dgs~~~Ivv~KT~ 102 (348)
|-.+.|+.|..|+++..+..++|+|| |+|.|-+||.+++.+||.+...+.++. ..+|||.+..
T Consensus 12 yR~~re~~L~~la~~~g~~~v~L~PM-~~~eRriIH~~l~~~gl~S~S~Geep~--~R~VvI~~~~ 74 (94)
T 2cpm_A 12 FRKRMEKEVSDFIQDSGQIKKKFQPM-NKIERSILHDVVEVAGLTSFSFGEDDD--CRYVMIFKKE 74 (94)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEECCCC-CSSHHHHHHHHHHHHTCEEEEECSSSS--CCEEEEECST
T ss_pred HHHHHHHHHHHHHHhcCCCceEeCCC-CHHHHHHHHHHHHHCCCEEEEecCCCC--ceEEEEEeCC
Confidence 55588999999998877656999999 999999999999999999999764331 1478887654
No 4
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=96.98 E-value=0.0021 Score=51.79 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018993 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (348)
Q Consensus 32 pkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~ 76 (348)
|.++-+|=.+-..|.+|+++++...++++|+ |+|+|-|+++-+.
T Consensus 7 ~e~k~~id~i~~kIe~FL~s~~~~~l~l~pC-N~f~RkLIYQ~~~ 50 (87)
T 1ug8_A 7 GDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 50 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCEEECCCC-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCceecCCc-hHHHHHHHHHHHH
Confidence 5788899999999999999999778999999 9999999999854
No 5
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=82.96 E-value=2.2 Score=39.46 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhh-hccceeeecccccCCccEEEEEe
Q 018993 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQH-YGLVTMVQENGIEGLGNRILVRK 100 (348)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~y-ygL~h~v~d~~~Dgs~~~Ivv~K 100 (348)
.|-+|-+.+.+=+..... .+.|.|| |+|.|-+||...+- =++.+.....+ ...+|||..
T Consensus 149 ~L~~lA~~~A~kV~~tg~-~v~L~PM-~~~ERriIH~al~~~~~V~T~SeGee---p~R~VVI~~ 208 (225)
T 3gku_A 149 TLETLAKNIAYKVKRTKR-SVSLEPM-NPYERRIIHAALQNDKYVVTRSDGEE---PFRHVIISL 208 (225)
T ss_dssp HHHHHHHHHHHHHHHHCS-CEECCCC-CHHHHHHHHHHTTTCSSEEEEEESST---TSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCC-EEEccCC-CHHHHHHHHHHHccCCCcEEEEeecC---CCeEEEEEE
Confidence 444444444444444443 4789999 99999999997655 48888876543 335677754
No 6
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.38 E-value=1.3 Score=44.93 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018993 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (348)
Q Consensus 32 pkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~ 76 (348)
+.|+.+|-++-+.|.+|+++.....+.++++ |+|+|.|+|++..
T Consensus 170 ~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~-n~~~r~Lv~q~l~ 213 (507)
T 3d45_A 170 EDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 213 (507)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccCCC-cHHHHHHHHHHHH
Confidence 5678888899999999999887767899999 9999999998753
No 7
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=60.80 E-value=1.8 Score=43.09 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018993 33 RHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (348)
Q Consensus 33 kDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~ 76 (348)
.++-+|-++-+.|.+|+++.+...+.++++ |+|+|.|+|++-.
T Consensus 176 e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~-~~~qr~Lv~q~l~ 218 (430)
T 2a1r_A 176 DQKKFIDQVVEKIEDLLQSEENKNLDLEPC-TGFQRKLIYQTLS 218 (430)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCC-cHHHHHHHHHHHH
Confidence 456677777788889998887677999998 9999999999743
No 8
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=20.59 E-value=4.1 Score=34.66 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.1
Q ss_pred hHHHHHHHHhhhhhccceee
Q 018993 65 SYLRLAAHRVSQHYGLVTMV 84 (348)
Q Consensus 65 SY~RLLvHRvA~yygL~h~v 84 (348)
||++||+||| +.|+|+...
T Consensus 2 Syq~lL~~RC-DIYHl~~~e 20 (126)
T 3f3b_A 2 SYRQMLIHRC-DIYHEAAQA 20 (126)
T ss_dssp --CCCCCEEE-EEECCEEEC
T ss_pred CHHHhhhccc-ceechhhcc
Confidence 8999999996 677885543
No 9
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.33 E-value=37 Score=24.58 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccc
Q 018993 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLV 81 (348)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRvA~yygL~ 81 (348)
-||+||.+|+.+=+-.+.+...|.- .|-++|---|=|..+.|+
T Consensus 7 EILRLErEIE~Lqrqke~~~~~L~e--~s~~eL~~~RD~El~RLe 49 (51)
T 2lw9_A 7 EILRLEKEIEDLQRMKEQQELSLTE--ASLQKLQERRDQELRRLE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHhh
Confidence 4899999999987766554444544 678888777777777764
No 10
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=19.52 E-value=38 Score=27.82 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhcccee
Q 018993 67 LRLAAHRVSQHYGLVTM 83 (348)
Q Consensus 67 ~RLLvHRvA~yygL~h~ 83 (348)
..-|+|.||.|||+...
T Consensus 91 ~~vvvhEiahh~G~~~e 107 (114)
T 3e11_A 91 RKTVVHEIAHHFGIDDE 107 (114)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 45689999999999653
Done!