BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018994
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 139/266 (52%), Gaps = 18/266 (6%)
Query: 21 AASHSTVKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGP 80
A ++ LPG F +GY+ S L Y+FV+S K+P+ P++LWL GGP
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 81 GCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPH 140
GCS+ GL E GP V+ +G TL NPYSW A++L+++SP G GFSY+
Sbjct: 59 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 113
Query: 141 ASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIK 200
+ T D + + L+ + PE+ +N ++ G+SY+GI +P L + +
Sbjct: 114 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 166
Query: 201 PLINLQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKD- 259
P +NLQG +GN + NS + FA+ GL+ N L+ SL+ C + +NKD
Sbjct: 167 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 260 -CLNDIQTFSKLT--SGVEKSHILEP 282
C+ ++Q +++ SG+ ++ P
Sbjct: 227 ECVTNLQEVARIVGNSGLNIYNLYAP 252
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 18/266 (6%)
Query: 21 AASHSTVKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGP 80
A ++ LPG F +GY+ S+ L Y+FV+S K+P+ P++LWL GGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLKGSGSK--HLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 81 GCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPH 140
GCS+ GL E GP V+ +G TL NPYSW A++L+++SP G GFSY+
Sbjct: 61 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 115
Query: 141 ASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIK 200
+ T D + + L+ + PE+ +N ++ G+SY+GI +P L + +
Sbjct: 116 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 168
Query: 201 PLINLQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKD- 259
P +NLQG +GN + NS + FA+ GL+ N L+ SL+ C + +NKD
Sbjct: 169 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 260 -CLNDIQTFSKLT--SGVEKSHILEP 282
C+ ++Q +++ SG+ ++ P
Sbjct: 229 ECVTNLQEVARIVGNSGLNIYNLYAP 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 65 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 175
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 217
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 66 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 176
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 218
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 70 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 70 YGASEELGAFR---VKPAGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 21/195 (10%)
Query: 43 TGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEY 102
TGY+ V E E+ F++ +S +P +DP++LWL GGPGCS+ +GL +E+GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIG---- 72
Query: 103 NGSLPTLR--LNPYSWTKEASILFVDSPVGTGFSYARTPHASQT-GDFKQVHHLDQFLRK 159
P L+ NPYSW A+++F+D PV GFSY+ + S T K V++ FL
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN---FLEL 125
Query: 160 WLMDHPEFISN--PFYVGGDSYSGITVPALVQRISNENEEDIKPLINLQGYILGNPRTDM 217
+ PE+++ F++ G+SY+G +P I + + + NL ++GN TD
Sbjct: 126 FFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDP 181
Query: 218 VVEQNSQIPFAHGMG 232
+ + N P A G G
Sbjct: 182 LTQYNYYEPMACGEG 196
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 43 TGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEY 102
TGY+ V E E+ F++ +S +P +DP++LWL GGPGCS+ +GL + +GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIG---- 72
Query: 103 NGSLPTLR--LNPYSWTKEASILFVDSPVGTGFSYARTPHASQT-GDFKQVHHLDQFLRK 159
P L+ NPYSW A+++F+D PV GFSY+ + S T K V++ FL
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN---FLEL 125
Query: 160 WLMDHPEFISN--PFYVGGDSYSGITVPALVQRISNENEEDIKPLINLQGYILGNPRTDM 217
+ PE+++ F++ G SY+G +P I + + + NL ++GN TD
Sbjct: 126 FFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDP 181
Query: 218 VVEQNSQIPFAHGMG 232
+ + N P A G G
Sbjct: 182 LTQYNYYEPMACGEG 196
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 14/237 (5%)
Query: 30 LPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDP-LLLWLTGGPGCSAFS-G 87
LPG + F + GYV + ++ L+Y+F ++D L+LWL GGPGCS+ G
Sbjct: 13 LPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLG 72
Query: 88 LAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTGDF 147
E+G +T NG +L LN Y+W K A+ILF +SP G GFSY+ T GD
Sbjct: 73 AMQELGAFRVHT---NGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 148 KQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRI-SNENEEDIKPLINLQ 206
K FL KW P + FY+ G+ SG +P L Q + N N P IN Q
Sbjct: 128 KMAQDTYTFLVKWFERFPHYNYREFYIAGE--SGHFIPQLSQVVYRNRNN---SPFINFQ 182
Query: 207 GYILGNPRTDMVVEQNSQIPFAHGMGLISNELYES-LKITCGGEYVNVDPNNKDCLN 262
G ++ + T+ + GLIS+E +S LK+ G +++ P + N
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWN 239
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 16/194 (8%)
Query: 51 SEEAQLFYYFVKSDKNPKED-PLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEYNGSLPTL 109
S+ F+ F +D N D PL++WL GGPGCS+ G E GP N S L
Sbjct: 47 SDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVN------SDGKL 100
Query: 110 RLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTG------DFKQV-HHLDQFLRKWLM 162
LN SW + +LF+D P GTGFS + + D + V H FL +
Sbjct: 101 YLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFK 160
Query: 163 DHPEFISNPFYVGGDSYSGITVPALVQRISNENE--EDIKPLINLQGYILGNPRTDMVVE 220
PE ++ + G+SY+G +P I N N+ + +L+ ++GN D +
Sbjct: 161 IFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQ 220
Query: 221 QNSQIPFAHGMGLI 234
S +PFA LI
Sbjct: 221 SLSYLPFAMEKKLI 234
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 42 ETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAF 85
E GYV VGE+E D P E P L L GGPG +A+
Sbjct: 4 EIGYVPVGEAE-------LYVEDVGPVEGPALFVLHGGPGGNAY 40
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 139 PHASQTGDFKQ--VHHLDQFLRKWLMDHPEFI 168
P +TG+F + +H +D F+R+W D P+++
Sbjct: 104 PDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 139 PHASQTGDFKQ--VHHLDQFLRKWLMDHPEFI 168
P +TG+F + +H +D F+R+W D P+++
Sbjct: 104 PDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
>pdb|3M1R|A Chain A, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|B Chain B, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|C Chain C, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|D Chain D, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|E Chain E, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|F Chain F, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
Length = 322
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 148 KQVHHLDQFLRKWLMDHPEFISNPFYVGGD-SYSGITVPALVQ 189
K HH+ Q L DHP+++ P +GGD S S T+ A+ Q
Sbjct: 102 KSHHHIFQTXHALLSDHPDWV--PLILGGDNSISYSTIKAIAQ 142
>pdb|1GIQ|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIQ|B Chain B, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIR|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadph
pdb|3BUZ|A Chain A, Crystal Structure Of Ia-Btad-Actin Complex
Length = 413
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 146 DFKQVHHLDQFLRKW---LMDHPEFISNPFYVGGDSYSGITVPALVQRIS 192
DF ++ ++D F KW ++ +P FIS +G + S ++ RI+
Sbjct: 312 DFNKIENIDAFKEKWEGKVITYPNFISTS--IGSVNMSAFAKRKIILRIN 359
>pdb|4H0Y|A Chain A, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 418
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 146 DFKQVHHLDQFLRKW---LMDHPEFISNPFYVGGDSYSGITVPALVQRIS 192
DF ++ ++D F KW ++ +P FIS +G + S ++ RI+
Sbjct: 317 DFNKIENIDAFKEKWEGKVITYPNFISTS--IGSVNMSAFAKRKIILRIN 364
>pdb|4H0V|A Chain A, Crystal Structure Of Nad+-ia(e378s)-actin Complex
Length = 418
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 146 DFKQVHHLDQFLRKW---LMDHPEFISNPFYVGGDSYSGITVPALVQRIS 192
DF ++ ++D F KW ++ +P FIS +G + S ++ RI+
Sbjct: 317 DFNKIENIDAFKEKWEGKVITYPNFISTS--IGSVNMSAFAKRKIILRIN 364
>pdb|4H0X|A Chain A, Crystal Structure Of Nad+-ia(e380a)-actin Complex
Length = 418
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 146 DFKQVHHLDQFLRKW---LMDHPEFISNPFYVGGDSYSGITVPALVQRIS 192
DF ++ ++D F KW ++ +P FIS +G + S ++ RI+
Sbjct: 317 DFNKIENIDAFKEKWEGKVITYPNFISTS--IGSVNMSAFAKRKIILRIN 364
>pdb|4GY2|A Chain A, Crystal Structure Of Apo-ia-actin Complex
pdb|4H03|A Chain A, Crystal Structure Of Nad+-ia-actin Complex
pdb|4H0T|A Chain A, Crystal Structure Of Ia-adpr-actin Complex
Length = 418
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 146 DFKQVHHLDQFLRKW---LMDHPEFISNPFYVGGDSYSGITVPALVQRIS 192
DF ++ ++D F KW ++ +P FIS +G + S ++ RI+
Sbjct: 317 DFNKIENIDAFKEKWEGKVITYPNFISTS--IGSVNMSAFAKRKIILRIN 364
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 93 GPVNFNTVEYNGSLPTLRLN 112
GP+ N V YNG +P + LN
Sbjct: 391 GPIKVNNVNYNGVMPAMNLN 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,609,896
Number of Sequences: 62578
Number of extensions: 533384
Number of successful extensions: 1197
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 26
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)