Query 018995
Match_columns 348
No_of_seqs 52 out of 54
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:49:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07607 BAR_SH3P_plant The Bin 100.0 1E-120 3E-125 819.5 21.6 209 48-257 1-209 (209)
2 cd07307 BAR The Bin/Amphiphysi 99.4 9.3E-12 2E-16 100.7 16.5 186 62-255 7-192 (194)
3 PF03114 BAR: BAR domain; Int 99.1 1.4E-08 3E-13 85.4 18.0 219 13-258 3-228 (229)
4 smart00721 BAR BAR domain. 98.6 2.5E-05 5.4E-10 68.1 21.2 226 14-258 5-237 (239)
5 cd07604 BAR_ASAPs The Bin/Amph 97.6 0.0034 7.4E-08 58.0 16.1 201 41-258 8-212 (215)
6 KOG1118 Lysophosphatidic acid 97.4 0.026 5.6E-07 56.3 19.6 289 12-333 2-333 (366)
7 cd07595 BAR_RhoGAP_Rich-like T 97.4 0.034 7.4E-07 52.2 19.2 162 86-259 60-225 (244)
8 cd07639 BAR_ACAP1 The Bin/Amph 97.3 0.0079 1.7E-07 55.5 14.3 176 68-255 22-197 (200)
9 cd07619 BAR_Rich2 The Bin/Amph 97.3 0.03 6.5E-07 53.4 17.8 198 47-260 17-230 (248)
10 cd07616 BAR_Endophilin_B1 The 97.2 0.027 5.9E-07 53.0 16.3 160 77-257 65-228 (229)
11 cd07603 BAR_ACAPs The Bin/Amph 97.1 0.025 5.3E-07 51.7 15.0 178 66-255 20-197 (200)
12 cd07600 BAR_Gvp36 The Bin/Amph 97.0 0.042 9.1E-07 51.9 16.2 222 13-257 11-241 (242)
13 cd07606 BAR_SFC_plant The Bin/ 97.0 0.04 8.7E-07 50.7 15.5 183 47-255 14-200 (202)
14 cd07637 BAR_ACAP3 The Bin/Amph 97.0 0.041 8.8E-07 50.5 15.2 157 87-255 41-197 (200)
15 cd07602 BAR_RhoGAP_OPHN1-like 97.0 0.032 6.9E-07 51.9 14.4 141 106-255 64-204 (207)
16 cd07634 BAR_GAP10-like The Bin 96.9 0.03 6.5E-07 52.2 14.1 141 106-255 64-204 (207)
17 cd07592 BAR_Endophilin_A The B 96.8 0.14 3.1E-06 47.8 17.4 150 86-259 67-217 (223)
18 cd07594 BAR_Endophilin_B The B 96.8 0.13 2.9E-06 48.2 17.0 152 87-257 73-228 (229)
19 cd07613 BAR_Endophilin_A1 The 96.7 0.14 3.1E-06 48.2 16.7 148 86-259 67-217 (223)
20 cd07617 BAR_Endophilin_B2 The 96.6 0.14 3.1E-06 48.2 15.9 183 47-257 19-219 (220)
21 cd07618 BAR_Rich1 The Bin/Amph 96.5 0.25 5.4E-06 47.1 17.3 194 47-261 17-229 (246)
22 cd07593 BAR_MUG137_fungi The B 96.5 0.28 6.1E-06 45.7 17.2 153 85-257 53-207 (215)
23 cd07638 BAR_ACAP2 The Bin/Amph 96.5 0.26 5.5E-06 45.7 16.7 182 48-255 16-197 (200)
24 cd07596 BAR_SNX The Bin/Amphip 96.3 0.64 1.4E-05 39.8 17.6 164 87-255 43-216 (218)
25 PF14604 SH3_9: Variant SH3 do 96.2 0.0033 7.1E-08 45.2 2.2 25 311-335 1-25 (49)
26 cd07615 BAR_Endophilin_A3 The 96.1 0.52 1.1E-05 44.4 16.5 148 86-259 67-217 (223)
27 cd07636 BAR_GRAF The Bin/Amphi 96.0 0.23 5E-06 46.4 13.6 186 61-255 15-204 (207)
28 smart00326 SH3 Src homology 3 95.7 0.0092 2E-07 40.3 2.7 30 307-336 3-32 (58)
29 cd07635 BAR_GRAF2 The Bin/Amph 95.7 0.42 9.1E-06 44.7 14.3 140 107-255 65-204 (207)
30 PF00018 SH3_1: SH3 domain; I 95.7 0.0091 2E-07 41.9 2.7 29 310-338 1-29 (48)
31 cd00174 SH3 Src homology 3 dom 95.6 0.011 2.3E-07 39.7 2.5 28 309-336 2-29 (54)
32 cd07614 BAR_Endophilin_A2 The 95.0 3.4 7.3E-05 39.0 17.8 151 86-259 67-217 (223)
33 cd07590 BAR_Bin3 The Bin/Amphi 94.9 2.6 5.7E-05 39.6 16.8 196 33-257 8-211 (225)
34 cd07588 BAR_Amphiphysin The Bi 94.8 2.2 4.7E-05 39.7 15.8 174 59-259 27-207 (211)
35 cd07601 BAR_APPL The Bin/Amphi 94.2 2 4.4E-05 40.2 14.3 146 103-256 59-205 (215)
36 cd07676 F-BAR_FBP17 The F-BAR 93.7 6.3 0.00014 37.3 17.4 88 83-170 37-148 (253)
37 cd07620 BAR_SH3BP1 The Bin/Amp 93.6 7.7 0.00017 37.8 18.4 158 87-264 61-243 (257)
38 cd07598 BAR_FAM92 The Bin/Amph 93.1 7.5 0.00016 36.1 19.7 158 85-258 41-202 (211)
39 PF07653 SH3_2: Variant SH3 do 92.8 0.093 2E-06 37.8 2.5 27 308-334 1-27 (55)
40 PF09325 Vps5: Vps5 C terminal 92.6 7.1 0.00015 34.6 17.4 149 105-255 78-234 (236)
41 PF10455 BAR_2: Bin/amphiphysi 89.4 23 0.00051 34.9 17.9 139 103-258 146-287 (289)
42 cd07633 BAR_OPHN1 The Bin/Amph 86.4 21 0.00046 33.9 13.0 181 65-254 19-203 (207)
43 KOG0162 Myosin class I heavy c 85.7 1 2.2E-05 49.9 4.5 26 310-335 1055-1080(1106)
44 cd07599 BAR_Rvs167p The Bin/Am 82.4 37 0.00081 30.6 13.8 139 47-212 22-170 (216)
45 PF08397 IMD: IRSp53/MIM homol 82.0 40 0.00088 30.7 16.7 193 48-257 10-207 (219)
46 KOG4225 Sorbin and SH3 domain- 81.2 0.88 1.9E-05 47.4 1.9 30 306-335 230-259 (489)
47 PRK04406 hypothetical protein; 80.9 14 0.0003 29.6 8.1 34 195-228 8-41 (75)
48 cd07642 BAR_ASAP2 The Bin/Amph 80.8 54 0.0012 31.4 15.8 180 74-258 28-212 (215)
49 PRK02119 hypothetical protein; 78.2 24 0.00052 28.0 8.7 33 196-228 7-39 (73)
50 PRK02793 phi X174 lysis protei 77.2 22 0.00048 28.1 8.2 33 196-228 6-38 (72)
51 cd07605 I-BAR_IMD Inverse (I)- 76.6 70 0.0015 30.3 18.1 139 110-253 69-214 (223)
52 PF04912 Dynamitin: Dynamitin 76.1 8.1 0.00018 38.1 6.7 34 150-183 87-120 (388)
53 cd07675 F-BAR_FNBP1L The F-BAR 70.5 1.1E+02 0.0023 29.7 18.3 149 82-256 36-213 (252)
54 cd07591 BAR_Rvs161p The Bin/Am 70.1 95 0.0021 29.0 16.6 175 58-254 25-207 (224)
55 cd07653 F-BAR_CIP4-like The F- 68.7 93 0.002 28.3 17.0 63 83-145 37-101 (251)
56 cd07631 BAR_APPL1 The Bin/Amph 67.6 1.2E+02 0.0026 29.1 17.0 182 44-255 19-204 (215)
57 cd07643 I-BAR_IMD_MIM Inverse 64.2 1.5E+02 0.0032 28.9 16.7 84 104-197 70-160 (231)
58 cd07657 F-BAR_Fes_Fer The F-BA 63.5 1.3E+02 0.0029 28.3 17.2 153 83-255 37-211 (237)
59 PRK00846 hypothetical protein; 63.0 77 0.0017 25.9 8.5 18 194-211 9-26 (77)
60 PRK00736 hypothetical protein; 62.6 68 0.0015 25.1 8.0 7 279-285 62-68 (68)
61 PF06456 Arfaptin: Arfaptin-li 61.7 1.5E+02 0.0032 28.1 16.7 189 19-227 13-205 (229)
62 PRK00295 hypothetical protein; 61.4 69 0.0015 25.1 7.8 32 197-228 4-35 (68)
63 PF04102 SlyX: SlyX; InterPro 60.5 45 0.00098 25.9 6.6 15 197-211 3-17 (69)
64 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.7 1E+02 0.0022 26.3 8.5 81 151-231 18-99 (132)
65 cd07673 F-BAR_FCHO2 The F-BAR 55.5 1.9E+02 0.0042 27.6 20.5 161 83-261 44-237 (269)
66 KOG4226 Adaptor protein NCK/Do 55.0 15 0.00032 37.1 3.9 28 309-336 110-137 (379)
67 cd07612 BAR_Bin2 The Bin/Amphi 54.9 1.9E+02 0.0042 27.4 14.2 182 45-259 19-207 (211)
68 PF06730 FAM92: FAM92 protein; 54.6 2.1E+02 0.0045 27.6 18.2 158 84-256 47-207 (219)
69 cd07624 BAR_SNX7_30 The Bin/Am 49.1 2.1E+02 0.0045 26.0 16.5 130 106-254 67-197 (200)
70 cd07686 F-BAR_Fer The F-BAR (F 48.3 2.6E+02 0.0056 26.9 17.0 159 83-256 37-209 (234)
71 cd07610 FCH_F-BAR The Extended 45.2 2E+02 0.0043 24.7 16.1 63 83-146 32-94 (191)
72 PRK05849 hypothetical protein; 41.9 34 0.00074 37.8 4.5 58 82-143 434-501 (783)
73 PF01025 GrpE: GrpE; InterPro 41.6 87 0.0019 26.8 6.1 71 187-257 7-77 (165)
74 KOG4559 Uncharacterized conser 40.0 36 0.00077 30.0 3.4 56 146-201 47-116 (120)
75 PF13587 DJ-1_PfpI_N: N-termin 38.5 2.3 4.9E-05 30.2 -3.3 18 300-317 16-33 (38)
76 PF06075 DUF936: Plant protein 37.5 45 0.00098 35.7 4.4 37 199-235 317-358 (579)
77 KOG1702 Nebulin repeat protein 36.2 25 0.00054 34.3 2.1 24 310-333 211-234 (264)
78 KOG4348 Adaptor protein CMS/SE 35.3 26 0.00055 37.4 2.2 27 307-333 262-288 (627)
79 KOG2008 BTK-associated SH3-dom 35.1 1.1E+02 0.0025 31.6 6.6 48 46-98 15-64 (426)
80 PRK13729 conjugal transfer pil 30.8 3.7E+02 0.0079 28.8 9.6 25 188-212 66-90 (475)
81 KOG2199 Signal transducing ada 30.8 29 0.00062 36.4 1.7 26 310-335 219-244 (462)
82 cd07597 BAR_SNX8 The Bin/Amphi 30.7 4.6E+02 0.01 24.6 15.8 143 104-256 90-244 (246)
83 KOG3208 SNARE protein GS28 [In 30.2 1.4E+02 0.0031 29.1 6.1 39 2-46 8-48 (231)
84 TIGR02680 conserved hypothetic 27.7 1.1E+03 0.023 27.9 16.2 158 85-252 827-990 (1353)
85 PF11697 DUF3293: Protein of u 27.1 28 0.00061 27.3 0.7 18 143-160 52-69 (73)
86 KOG1029 Endocytic adaptor prot 26.7 1.1E+03 0.023 27.6 17.4 30 306-335 693-722 (1118)
87 PRK10409 hydrogenase assembly 26.3 36 0.00077 28.5 1.2 10 324-333 41-50 (90)
88 PRK13858 type IV secretion sys 25.0 88 0.0019 28.5 3.5 89 39-134 31-120 (147)
89 COG5346 Predicted membrane pro 24.9 55 0.0012 29.6 2.2 14 229-242 54-67 (136)
90 PF11302 DUF3104: Protein of u 24.7 41 0.0009 27.6 1.3 15 323-337 4-18 (75)
91 KOG2856 Adaptor protein PACSIN 24.4 71 0.0015 33.5 3.1 109 138-246 110-246 (472)
92 cd07629 BAR_Atg20p The Bin/Amp 24.3 1.8E+02 0.0039 26.4 5.4 53 90-145 47-99 (187)
93 COG1948 MUS81 ERCC4-type nucle 23.9 38 0.00082 33.1 1.1 13 324-336 56-68 (254)
94 PF02183 HALZ: Homeobox associ 23.7 1.5E+02 0.0032 21.9 3.9 27 154-180 16-42 (45)
95 KOG3601 Adaptor protein GRB2, 22.0 59 0.0013 31.4 1.9 55 281-335 129-192 (222)
96 PF05911 DUF869: Plant protein 21.9 1.2E+03 0.026 26.4 12.1 66 153-224 592-657 (769)
97 KOG0171 Mitochondrial inner me 21.7 63 0.0014 30.3 2.0 34 300-339 47-80 (176)
98 PF00458 WHEP-TRS: WHEP-TRS do 21.7 2.1E+02 0.0046 22.0 4.5 45 162-213 1-46 (56)
99 PF02617 ClpS: ATP-dependent C 21.5 2.2E+02 0.0047 22.3 4.7 43 134-177 20-71 (82)
100 PF08826 DMPK_coil: DMPK coile 21.1 1.3E+02 0.0028 23.6 3.3 48 165-214 7-55 (61)
101 TIGR02449 conserved hypothetic 20.9 4.1E+02 0.0089 21.2 6.1 51 154-210 11-61 (65)
102 PF13982 YbfN: YbfN-like lipop 20.3 1.4E+02 0.0031 25.3 3.6 37 146-203 3-39 (89)
103 TIGR00074 hypC_hupF hydrogenas 20.3 53 0.0012 26.5 1.1 9 325-333 36-44 (76)
No 1
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=1.4e-120 Score=819.50 Aligned_cols=209 Identities=69% Similarity=0.984 Sum_probs=206.5
Q ss_pred HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhH
Q 018995 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (348)
Q Consensus 48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~ 127 (348)
|+|||||+|||||||||||||||||||||||+||||||+||||||||||+||| +++++||||+++||+||++|||||||
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~ 79 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN 79 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999 57889999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHH
Q 018995 128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207 (348)
Q Consensus 128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~M 207 (348)
|||+||+||+||||||||||||||||||+|||||||||||+||+||+|||+|+||++|||||++||++||+||+||||||
T Consensus 80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M 159 (209)
T cd07607 80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSM 159 (209)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (348)
Q Consensus 208 a~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e 257 (348)
++|||||||||++||+||||+|||||++||||||+|||||++|||+||+|
T Consensus 160 ~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~e 209 (209)
T cd07607 160 NTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHDE 209 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999975
No 2
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.44 E-value=9.3e-12 Score=100.71 Aligned_cols=186 Identities=23% Similarity=0.363 Sum_probs=161.2
Q ss_pred hhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHH
Q 018995 62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR 141 (348)
Q Consensus 62 hFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLR 141 (348)
.+=+.|++.+..++..+.+.......|++-++++|...+...+..|+.+-..||.+...++..+.++..-+...|.+||+
T Consensus 7 ~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~ 86 (194)
T cd07307 7 KLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLK 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666667778889999999999998754443599999999999999999999999999999999999
Q ss_pred HhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH
Q 018995 142 AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV 221 (348)
Q Consensus 142 aMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV 221 (348)
..+. ..+.+.+....+|++.|.+.++--..+.+-+.|.. +..||..++.++++.+.....+..+....|..+
T Consensus 87 ~~~~-~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~-------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~ 158 (194)
T cd07307 87 EYLK-KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK-------DSSKLAEAEEELQEAKEKYEELREELIEDLNKL 158 (194)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 55678999999999999999998888876654422 568999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 222 EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
..........-|.+++++...||+.+..++++|.
T Consensus 159 ~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 159 EEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 9999998999999999999999999999988875
No 3
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.10 E-value=1.4e-08 Score=85.42 Aligned_cols=219 Identities=21% Similarity=0.364 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhh------
Q 018995 13 EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT------ 86 (348)
Q Consensus 13 EqVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~------ 86 (348)
-.+.|-.|.|.-.+|++ +...+|+.=-....++..+...+ +++++++ +.|+....+-..-..
T Consensus 3 K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~~~---~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 70 (229)
T PF03114_consen 3 KKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEESI---KKLQKSL----KKYLDSIKKLSASQKNMKSPF 70 (229)
T ss_dssp HHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHCHTHHH
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHhhhhhHHhhhhhHHH
Confidence 34667777888888832 23335764222344444444333 4455444 334444444444444
Q ss_pred -hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 87 -KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 87 -KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
+|++.|..+|.+.. .+..++.+...||.+...++..+.+++.-+.+.|.+||+..+ ..+.+...+...+++.|.+
T Consensus 71 ~~l~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~--~~~~~i~~~~kkr~~~~ld 146 (229)
T PF03114_consen 71 EELADALIELGSEFS--DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL--KEFKEIKKLIKKREKKRLD 146 (229)
T ss_dssp HHHHHHHHHHHHCTS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence 99999999998864 233489999999999999999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 018995 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ 245 (348)
Q Consensus 166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHq 245 (348)
.+.....+.+-+.+ ++ .+.. +.++++.+.....+..+-..-|-.+.+-...+-..-|..+|++...||+
T Consensus 147 yd~~~~k~~k~~~~--~~--~~~~-------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~ 215 (229)
T PF03114_consen 147 YDSARSKLEKLRKK--KS--KSSK-------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQ 215 (229)
T ss_dssp HHHHHHHHHHCHTT--SS--BTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--hc--cccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887765443 11 2222 7777777777778888888889988877777777899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018995 246 RVLQILDQLEGEM 258 (348)
Q Consensus 246 rv~~ILd~L~~eM 258 (348)
.+.++|..|..++
T Consensus 216 ~~~~~l~~l~~~l 228 (229)
T PF03114_consen 216 QLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998775
No 4
>smart00721 BAR BAR domain.
Probab=98.58 E-value=2.5e-05 Score=68.08 Aligned_cols=226 Identities=17% Similarity=0.250 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceee---eecceeehhhhhhhh
Q 018995 14 QVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYI---VTGSKQVEIGTKLSE 90 (348)
Q Consensus 14 qVAkQQQAV~Kqfg~~gy~~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfi---s~gsKq~Ei~~KLae 90 (348)
++.|--|.|.-.+|++ +-..+||.=.+.-++++.+...+ ..|++.+++|+ .....-..+...+++
T Consensus 5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f~~le~~~~~~~~~~-------~kl~k~~~~y~q~~~~~~~~~~~~~~~~~ 72 (239)
T smart00721 5 QFNRAKQKVGEKVGKA-----EKTKLDEDFEELERRFDTTEAEI-------EKLQKDTKLYLQPNPAVRAKLASQKKLSK 72 (239)
T ss_pred hhHHHHHHHHHHhCCC-----CcCcCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 3555566777788822 34444665333333444333332 35666667776 444444455555555
Q ss_pred hhhh-ccC--CCC-CCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995 91 DSRK-YGS--DNT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (348)
Q Consensus 91 Dc~K-YG~--en~-~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 166 (348)
..+. |+. ... +.....+..+-..||.+...+-.-+..+ .-+..-+..|++.-+. .-+.+++....++++.|.+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~~~~~kk~~~~~lDy 150 (239)
T smart00721 73 SLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLL-GEFKEIKKARKKLERKLLDY 150 (239)
T ss_pred HHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHH-HHhHHHHHHHHHHHhHHHHH
Confidence 5444 333 111 2334457888889999999998888888 6666777777776653 34678888888888888888
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (348)
Q Consensus 167 E~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr 246 (348)
++.-..+.+=+.+.+ .+.+- ||..||.+|...+.....+.-+...-|..+.+=-.-.-..-|.+.+++...||..
T Consensus 151 D~~~~kl~~~~~~~~----~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~ 225 (239)
T smart00721 151 DSARHKLKKAKKSKE----KKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRE 225 (239)
T ss_pred HHHHHHHHHHHHhcc----CChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 877776654433322 12123 9999999999999999999999999999997666666788999999999999999
Q ss_pred HHHHHHHHHHHH
Q 018995 247 VLQILDQLEGEM 258 (348)
Q Consensus 247 v~~ILd~L~~eM 258 (348)
+..+|.+|...|
T Consensus 226 ~~~~l~~l~~~l 237 (239)
T smart00721 226 SYKLLQQLQQQL 237 (239)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 5
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=97.63 E-value=0.0034 Score=57.98 Aligned_cols=201 Identities=17% Similarity=0.270 Sum_probs=136.1
Q ss_pred hHHHhhH-HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHH
Q 018995 41 EAELHQH-QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA 119 (348)
Q Consensus 41 EaElq~H-Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~ 119 (348)
|..+.+| ..|+||+.+-+ +++..|.-.++--..+++.-++.|..-...+...++.+-..||.+-.
T Consensus 8 ee~l~~~~~~l~Kl~K~~k--------------~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~ 73 (215)
T cd07604 8 EESLEGDRVGLQKLKKAVK--------------AIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTK 73 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHH
Confidence 3444444 46777765544 45566666666677777777778866432233358888899999999
Q ss_pred HHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhh-hHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCC-CChhhhhhhHHH
Q 018995 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAK-VRETP-GNPDLALKLDAA 196 (348)
Q Consensus 120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-hLaqRYdRmRQEaE~Qa~eV~rRq~k-~res~-gn~e~~~KLq~A 196 (348)
.|++.+++|..-+..-|..||-..+.+ .|.+++ -+..+||+-+.+-|.-..-+.|.+.+ +++.. .-+| ...+.|
T Consensus 74 El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e--~~~~e~ 150 (215)
T cd07604 74 ELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTE--ITGAEI 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchh--hhhhhH
Confidence 999999999999999999999999998 778887 99999999999988766555554333 11100 0001 011122
Q ss_pred HHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018995 197 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 258 (348)
Q Consensus 197 E~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eM 258 (348)
+.-|.--++..--.--+=...+..|++-+-.==|+.|++.+.|--+|++.-.++|+.++-=|
T Consensus 151 ~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 151 AEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222222222222222356777787666666679999999999999999999999987433
No 6
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=97.41 E-value=0.026 Score=56.34 Aligned_cols=289 Identities=19% Similarity=0.315 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcceechH--HHh-----hHHHHHHHHhhhhh---------chhhhhhhhhccceee
Q 018995 12 REQVARQQQAVFKQFGGGGYGGSDNVVTDEA--ELH-----QHQRLERLYISTRA---------GKHFQRDIVRGVEGYI 75 (348)
Q Consensus 12 REqVAkQQQAV~Kqfg~~gy~~~d~~v~DEa--Elq-----~HQ~LekLY~STRa---------aKhFQrdIVRgvEGfi 75 (348)
+.|..|-+|-+=-.|||. ...=+|.. ||. +.--+-+|+.+|-- ||----+++.-|-|-+
T Consensus 2 ~kqF~ka~Q~~sEK~gga-----e~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~ 76 (366)
T KOG1118|consen 2 KKQFNKASQWTSEKVGGA-----EGTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQV 76 (366)
T ss_pred chHHHHHHHHhccccccc-----cCCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccc
Confidence 446667777888888832 22222322 222 23345566665521 2222236677777777
Q ss_pred eecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhH
Q 018995 76 VTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL 155 (348)
Q Consensus 76 s~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL 155 (348)
-+--++.+.| -|++---|||-|=... +.+..+-..||.+...|-.=.+.|---+---..+||.-. -|-|++.+
T Consensus 77 k~~~ypq~e~-~Lg~~mik~gkeLg~d--Ss~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l----~~~elK~i 149 (366)
T KOG1118|consen 77 KEKGYPQTEG-LLGDVMIKHGKELGDD--SSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL----QLKELKDI 149 (366)
T ss_pred cCCCCccchh-HHHHHHHHHHHhcCCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----hHHHHHHH
Confidence 6655554432 4666677888886522 236677788999999888777777777777778888643 23344444
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHH
Q 018995 156 AQRYDRMRQEAEAQAIEVS-KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLI 234 (348)
Q Consensus 156 aqRYdRmRQEaE~Qa~eV~-rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLi 234 (348)
-+.-.+| |-..+.-|-. +|+-|.+ | --|..|..|..|-|.-. +.---++..+|.-| .+-|.
T Consensus 150 ~hh~KKL--EgRRldyD~kkkk~~K~~------d--EelrqA~eKfEESkE~a----E~sM~nlle~d~eq----vsqL~ 211 (366)
T KOG1118|consen 150 QHHRKKL--EGRRLDYDYKKKKQGKIK------D--EELRQALEKFEESKELA----EDSMFNLLENDVEQ----VSQLS 211 (366)
T ss_pred HHHHHHh--hhhhhHHHHHHHHhccCC------h--HHHHHHHHHHHHHHHHH----HHHHHHHHhcCHHH----HHHHH
Confidence 4433333 1122223322 2233322 2 23777888888765310 11112223333322 34577
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhh------hhhcCCCCCCCCCC-CCCCCCcccccccccc--------------
Q 018995 235 AMVEAERTYHQRVLQILDQLEGEMLSERQ------RIEAAPTAPTPSVD-TMPPPPAYEEVNGIYA-------------- 293 (348)
Q Consensus 235 aMVeAER~YHqrv~~ILd~L~~eMvsErq------~~Es~~~~~~~~~~-~~~pPpsyee~Ng~~~-------------- 293 (348)
++|+|+-.||+..+.||+.|.--.-+-.. +.|..|. +-++.. .+.-||. +.||.+.
T Consensus 212 ~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~-~~~an~f~p~~~p~--~~~g~~s~T~~t~~~ass~~~ 288 (366)
T KOG1118|consen 212 ALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPR-SVLANEFAPSGPPI--QLNGKLSKTTSTPQSASSPSN 288 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCc-ccccccCCCCCCcc--ccCCCCCcCccCccccCCccc
Confidence 99999999999999999999865433221 1111111 001000 0111221 2222111
Q ss_pred -cCCC----CCCCCccceeeEEecccCCCCCCceeeeeeCCEEEE
Q 018995 294 -SQTH----NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV 333 (348)
Q Consensus 294 -s~~~----~~~~~~~~yFlaev~hpF~aesegELsLsvGDyVVV 333 (348)
++.. +.+...+.-=.-.++..|+++.||||-|.-||.|.|
T Consensus 289 is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l 333 (366)
T KOG1118|consen 289 ISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITL 333 (366)
T ss_pred CCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeee
Confidence 1111 111133444556889999999999999999999865
No 7
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=97.37 E-value=0.034 Score=52.24 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=112.8
Q ss_pred hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
.-|+.---+||.+=. .+..|.+|-..||.+-+.|=.+|.++-..+-+.|.+||+....+ --.-+.+-|.-
T Consensus 60 ~~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~--------dik~i~k~RKk 129 (244)
T cd07595 60 YGLAQSMLESSKELP--DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEV--------EIPNIQKQKKR 129 (244)
T ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 345666667777753 45579999999999999999999999999999999999987652 12345555555
Q ss_pred HHHH--HHHHHHHhhh-h-cCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 018995 166 AEAQ--AIEVSKRQAK-V-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER 241 (348)
Q Consensus 166 aE~Q--a~eV~rRq~k-~-res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER 241 (348)
++.- .-|.+|++.+ . |+++ ...+..|....+..|.+...-+..---.|++.|-.|=+=-- =-+.-|..+|+|..
T Consensus 130 Le~~RLd~D~~k~r~~ka~k~~~-~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~-e~~~~l~~lv~aQl 207 (244)
T cd07595 130 LSKLVLDMDSARSRYNAAHKSSG-GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEA-EIASYLIDLIEAQR 207 (244)
T ss_pred HhhhhHHHHHHHHHHHhcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHH
Confidence 5543 3455666553 2 3333 34455666655666666555555555566677765532200 01466899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018995 242 TYHQRVLQILDQLEGEML 259 (348)
Q Consensus 242 ~YHqrv~~ILd~L~~eMv 259 (348)
.||.+.++||+.+..+|-
T Consensus 208 ~YH~~a~e~L~~l~~~l~ 225 (244)
T cd07595 208 EYHRTALSVLEAVLPELQ 225 (244)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 8
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.33 E-value=0.0079 Score=55.48 Aligned_cols=176 Identities=14% Similarity=0.200 Sum_probs=133.1
Q ss_pred hhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCC
Q 018995 68 VRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA 147 (348)
Q Consensus 68 VRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~Ga 147 (348)
++.+=++|..|....--..+++..-+.+|.+.+ .+..++.+-..|+.+-..|++.|..|+.-...-+..||-..+.+
T Consensus 22 ~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~- 98 (200)
T cd07639 22 VKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKE- 98 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 344444555666666666777777888887643 33347778888999999999999999999999999999998876
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhH
Q 018995 148 PLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR 227 (348)
Q Consensus 148 PLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQr 227 (348)
+|-+++-...+|||..+.-++-..--.+=. |.+ ..-++.|+.-|.--++...-..-+=+..+..|++-.-=
T Consensus 99 dl~~vKe~kK~FdK~s~~~d~al~K~~~~~-k~k--------~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkf 169 (200)
T cd07639 99 DLRGFRDARKEFERGAESLEAALQHNAETP-RRK--------AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKF 169 (200)
T ss_pred hhHHHHHHhhhHhhcchhHHHHHHHHhhcc-ccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999887533222210 111 11346777777777777776667777778888776666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 228 LTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 228 lTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
-=|+.|++.+.|=.+|++.--++|++|+
T Consensus 170 efle~ll~~m~a~~tfF~qG~ell~~l~ 197 (200)
T cd07639 170 DILEFMLQLMEAQASFFQQGHEALSALH 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6679999999999999999999999886
No 9
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.27 E-value=0.03 Score=53.39 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccceeeee--cceeehh-----hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHH
Q 018995 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVT--GSKQVEI-----GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA 119 (348)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~--gsKq~Ei-----~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~ 119 (348)
.++|||---+|+.+ =-+|++-++.++-- |+.-=-. .+-|++.+-+||.+=+ .+..|.+|-..||.+-+
T Consensus 17 ~~~le~r~D~~k~~---~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg--~~s~lg~aL~~~gea~~ 91 (248)
T cd07619 17 LLQVEKRLELVKQV---SHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG--DDSLLGKMLKLCGETED 91 (248)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence 45666665555443 33555555555422 1100011 1258999999999954 35679999999999999
Q ss_pred HHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCC--CChh-hhhhhH
Q 018995 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK--VRETP--GNPD-LALKLD 194 (348)
Q Consensus 120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k--~res~--gn~e-~~~KLq 194 (348)
.|=.+|-++---+-..|.+||+....+- |-.+-|-...-...|-+. |..|+|.+ ++.++ +|.+ +..|.+
T Consensus 92 kla~a~~~~d~~i~~~fl~PL~~~le~d-lk~I~k~RK~Le~~RLD~-----D~~K~r~~~a~~~~~~~~~~~~~~~k~e 165 (248)
T cd07619 92 KLAQELILFELQIERDVVEPLYVLAEVE-IPNIQKQRKHLAKLVLDM-----DSSRTRWQQSSKSSGLSSNLQPTGAKAD 165 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhHhhH-----HHHHHHHHhccccccccccccCCCCccH
Confidence 9999999999999999999999887642 222333333333333333 23444443 11111 1111 133444
Q ss_pred HHHHhHHHHHHHHH----HhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 018995 195 AAEVKLHDLKSNMA----ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (348)
Q Consensus 195 ~AE~Kl~ELks~Ma----~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMvs 260 (348)
.+...+.+....|. .+=-++..-|.-+..|=.. |+..|+|=-.||.+.++||+.|..+|-.
T Consensus 166 ~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~-----l~~Lv~AQleYHr~A~eiLe~l~~~i~~ 230 (248)
T cd07619 166 ALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANY-----FQTLIEVQAEYHRKSLELLQSVLPQIKA 230 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444454444444 2233333444444443322 9999999999999999999999988754
No 10
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=97.17 E-value=0.027 Score=53.03 Aligned_cols=160 Identities=14% Similarity=0.230 Sum_probs=108.9
Q ss_pred ecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHH
Q 018995 77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA 156 (348)
Q Consensus 77 ~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLa 156 (348)
.+.+|= ..-|++..-+||.+=. .++.+..|-..||.|.+.|=.-|..|..-..+-+..|||.-..+ --
T Consensus 65 ~~~~~~--~~~Lg~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--------di 132 (229)
T cd07616 65 PSRMNN--PELLGQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--------DY 132 (229)
T ss_pred CCCCCh--HHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 344443 3568888999999954 45679999999999999999999999988888999999998876 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC---CCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHH
Q 018995 157 QRYDRMRQEAEAQAIEVSKRQAKVRE---TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQR 232 (348)
Q Consensus 157 qRYdRmRQEaE~Qa~eV~rRq~k~re---s~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQR 232 (348)
..|.+-|.-+|.--.+.--.++|.+- ....+..-.+|..||.|+.+-+.-+ ...|--|-. -- =-+.=
T Consensus 133 k~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a-------~~~m~~i~~~~~--e~~~~ 203 (229)
T cd07616 133 KTITKERKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEIT-------RLLLEGISSTHA--HHLRC 203 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHH-------HHHHHhhhhcCh--HHHHH
Confidence 34566677777665544333333322 1112233456667787777644322 222222210 00 02456
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995 233 LIAMVEAERTYHQRVLQILDQLEGE 257 (348)
Q Consensus 233 LiaMVeAER~YHqrv~~ILd~L~~e 257 (348)
|.+.|+|.-.||....+||..|..+
T Consensus 204 L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 204 LNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999865
No 11
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.12 E-value=0.025 Score=51.68 Aligned_cols=178 Identities=12% Similarity=0.237 Sum_probs=132.0
Q ss_pred hhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhc
Q 018995 66 DIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (348)
Q Consensus 66 dIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 145 (348)
.|++++=++|..|.....-...++..-...|.+ |..+..++-+-..||.+-..|+..|..|+.-...-|.+||+..+.
T Consensus 20 kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~--~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k 97 (200)
T cd07603 20 KLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY--FRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVK 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555655556666677766677765 444556888888999999999999999999999999999999998
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHh
Q 018995 146 GAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ 225 (348)
Q Consensus 146 GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQ 225 (348)
+ .|-+.+-+..+||+...+-++-..--+. ..|.| | .-++.|+.-|.+-+++.--..-+=..++..|.+-.
T Consensus 98 ~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~-~~K~K-----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kK 167 (200)
T cd07603 98 E-DIKKVKESKKHFEKISDDLDNALVKNAQ-APRSK-----P---QEAEEATNILTATRSCFRHTALDYVLQINVLQAKK 167 (200)
T ss_pred H-hhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 5778999999999999988875442111 22322 1 13455666677777776666667777788887766
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 226 QRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 226 QrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
-=-=|+.|++.+.|=-+|.+.-.+++++|+
T Consensus 168 k~e~le~ll~~~~A~~tff~qG~el~~dl~ 197 (200)
T cd07603 168 RHEILSTLLSYMHAQFTFFHQGYDLLEDLE 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 666679999999999999988888888775
No 12
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.04 E-value=0.042 Score=51.86 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcc--eechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceee-hhhhhhh
Q 018995 13 EQVARQQQAVFKQFGGGGYGGSDNV--VTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV-EIGTKLS 89 (348)
Q Consensus 13 EqVAkQQQAV~Kqfg~~gy~~~d~~--v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~-Ei~~KLa 89 (348)
+.|=+-=+.|-|+|..-||--.-++ .+.+---.-+.+..-|=..| ...+.|.-++- -.++.|+= -...-|+
T Consensus 11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs 84 (242)
T cd07600 11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALS 84 (242)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHH
Confidence 4455556688899998888322111 12222222344454444444 34556655532 11111111 1234566
Q ss_pred hhhhhccCCCCC---CCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995 90 EDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (348)
Q Consensus 90 eDc~KYG~en~~---~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 166 (348)
+.+-++|.+-.. .+++.|++|-..||.+...|=.-|..+-..+.+-..+|||.-..+- -..+.+.|.-+
T Consensus 85 ~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d--------~k~i~k~RKkl 156 (242)
T cd07600 85 RAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTS--------FQKAHKARKKV 156 (242)
T ss_pred HHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 666666665432 2367899999999999999999999999999999999999876531 23567777777
Q ss_pred HHHHHHHHHHhhhhcCC---CCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 018995 167 EAQAIEVSKRQAKVRET---PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY 243 (348)
Q Consensus 167 E~Qa~eV~rRq~k~res---~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~Y 243 (348)
|.--.+.--.+.|.+.. ....+--..++.||.++.+-+ -.|.-.|..|-.-= =-++=|..+|+|.-.|
T Consensus 157 e~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~-------E~a~~~M~~il~~~--e~i~~L~~fv~AQl~Y 227 (242)
T cd07600 157 EDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSAT-------EEAVELMKEVLDNP--EPLQLLKELVKAQLAY 227 (242)
T ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhh--HHHHHHHHHHHHHHHH
Confidence 77655443333333222 112233445666777776655 34444555443321 1367788999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018995 244 HQRVLQILDQLEGE 257 (348)
Q Consensus 244 Hqrv~~ILd~L~~e 257 (348)
|....++|..|..+
T Consensus 228 h~~~~e~L~~l~~~ 241 (242)
T cd07600 228 HKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998764
No 13
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.01 E-value=0.04 Score=50.67 Aligned_cols=183 Identities=15% Similarity=0.205 Sum_probs=139.6
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHH----HHHHHhHHHHHHHH
Q 018995 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS----KAALSYGRARAQME 122 (348)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~La----rAa~~yg~a~~~mE 122 (348)
-.+|+|||.+-+.--+=+++.. --...+|..-+.||.. +.+..+. .+-..|+.+-..|+
T Consensus 14 ~~~~~Kl~K~~~~~~~a~~~~~--------------~a~~~Fa~~L~~f~~~---~dD~~~~a~gg~~l~kF~~~l~ei~ 76 (202)
T cd07606 14 RDRSLKLYKGCRKYRDALGEAY--------------DGDSAFAESLEEFGGG---HDDPISVAVGGPVMTKFTSALREIG 76 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCC---CCChHHHhccchHHHHHHHHHHHHH
Confidence 4577888877665322222222 2233455555666542 2333332 46778999999999
Q ss_pred HHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHH
Q 018995 123 KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD 202 (348)
Q Consensus 123 kEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~E 202 (348)
..|+.|+.-...-+..||...+- --|-+++-+..|||+-..+-++-..-.++-..+.|+ .+++.|+..|.-
T Consensus 77 ~~~~~L~~q~~~~l~~pL~~F~k-~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~--------~~~~ea~~~l~~ 147 (202)
T cd07606 77 SYKEVLRSQVEHMLNDRLAQFAD-TDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKP--------EILAAAEEDLGT 147 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCch--------HHHHHHHHHHHH
Confidence 99999999999999999999998 467789999999999999999876666554333331 346789999999
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 203 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 203 Lks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
.++..--..-+=..++..|++-.-==.|+.|++.+.|=-+|++.-.++|.+|+
T Consensus 148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~ 200 (202)
T cd07606 148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988999999999999888777889999999999999999999988774
No 14
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.98 E-value=0.041 Score=50.51 Aligned_cols=157 Identities=15% Similarity=0.286 Sum_probs=121.7
Q ss_pred hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (348)
Q Consensus 87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 166 (348)
.++..-+.++.+ |..+..++.+-..||.+-..|+..|..|+.-...-+.+||+.-+.+ .|-..+-+..+||+....-
T Consensus 41 ~F~~~l~d~~~~--~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~y 117 (200)
T cd07637 41 LFVSGIRDLSQQ--CKKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDL 117 (200)
T ss_pred HHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 333333334433 3344567788888999999999999999999999999999999886 5678889999999999988
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (348)
Q Consensus 167 E~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr 246 (348)
++-..-.+ ++|.++ | .-|+.|+.-|.+-+++.--..-+=..++..|++-.-=-=|+.|++.+.|=-+|+..
T Consensus 118 d~al~k~~--~~k~kk----~---~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~q 188 (200)
T cd07637 118 EIALVKNA--QAPRHK----P---HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQ 188 (200)
T ss_pred HHHHHHHh--hcCCCC----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77655433 233222 2 24577777888888877777777888888888877666779999999999999999
Q ss_pred HHHHHHHHH
Q 018995 247 VLQILDQLE 255 (348)
Q Consensus 247 v~~ILd~L~ 255 (348)
--++|++|+
T Consensus 189 G~el~~~~~ 197 (200)
T cd07637 189 GYSLLHELD 197 (200)
T ss_pred HHHHHHhhc
Confidence 999999886
No 15
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=96.95 E-value=0.032 Score=51.90 Aligned_cols=141 Identities=16% Similarity=0.243 Sum_probs=111.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 018995 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (348)
Q Consensus 106 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~g 185 (348)
.++-+-..||..-..||.+|+.|+.-....+..||..-+. -.|-+++-...+||+-..+-+.-..--++=..|.|+
T Consensus 64 ~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k-~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~--- 139 (207)
T cd07602 64 EIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRK-EQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKE--- 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc---
Confidence 3677788999999999999999999999999999999987 788999999999999999988765543322222121
Q ss_pred ChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 186 n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
.-++.|+.-|.--+++.--..-+=..++..|++-..===|+.|++.+.|=-+|...--+++.+++
T Consensus 140 -----~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~ 204 (207)
T cd07602 140 -----NQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK 204 (207)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 23667777777777777766677778888888766555668899999999999888888887765
No 16
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=96.94 E-value=0.03 Score=52.22 Aligned_cols=141 Identities=14% Similarity=0.216 Sum_probs=112.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 018995 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (348)
Q Consensus 106 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~g 185 (348)
.++-+-..|+.--..||.+|+.|+.-...-|..||-..+.+ .|-+++-...+||+-...-++-..--..-..+.++
T Consensus 64 ~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~-dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~--- 139 (207)
T cd07634 64 SIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKE-QIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKE--- 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchhHHHhHHHHHHHHHHhccccCCc---
Confidence 58889999999999999999999999999999999999876 57899999999999999997733322222112111
Q ss_pred ChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 186 n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
.-++.|+.-|.--++..--..-+=+..+..|++-.-===|+.|++.+.|=.+|.+.-.+++++|+
T Consensus 140 -----~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~ 204 (207)
T cd07634 140 -----SHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA 204 (207)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 24577888888777777666667777777777766555679999999999999999999988875
No 17
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=96.80 E-value=0.14 Score=47.80 Aligned_cols=150 Identities=23% Similarity=0.354 Sum_probs=104.0
Q ss_pred hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
.-|++.+-+||.+=. .++.++.|-..||.|..++=..|..+--.+.+-+.+||+.-..+- -..|...|.-
T Consensus 67 ~~Lg~~M~~~g~elg--~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk 136 (223)
T cd07592 67 GLLGEVMLKYGRELG--EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD--------LKEINHHRKK 136 (223)
T ss_pred cHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 568999999999964 445799999999999999999999999999999999999654321 1245566666
Q ss_pred HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhHHHHH
Q 018995 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERTYH 244 (348)
Q Consensus 166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeAER~YH 244 (348)
+|.--.+.--.++|... .++ .-|..||.|+.+-+.- |...|-.+=. .-- -+.=|...|+|...||
T Consensus 137 Le~rRLdyD~~k~k~~k---~~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e--~~~~L~~lveAQl~Yh 202 (223)
T cd07592 137 LEGRRLDYDYKKRKQGK---GPD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE--QVSQLSALVEAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHhccc---Cch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH--HHHHHHHHHHHHHHHH
Confidence 66554443322223221 122 3466788887765543 2233322211 000 1355889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018995 245 QRVLQILDQLEGEML 259 (348)
Q Consensus 245 qrv~~ILd~L~~eMv 259 (348)
...++||..|..+|-
T Consensus 203 ~~~~e~L~~l~~~L~ 217 (223)
T cd07592 203 RQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999886
No 18
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=96.76 E-value=0.13 Score=48.23 Aligned_cols=152 Identities=18% Similarity=0.314 Sum_probs=105.1
Q ss_pred hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (348)
Q Consensus 87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 166 (348)
-|++-.-+||.+=. .++.++.|-..||.|...|=.-|..+.-.+.+-+.+||+....+- -.-|..-|.-+
T Consensus 73 ~Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~d--------ik~i~k~RKkL 142 (229)
T cd07594 73 QLGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGD--------MKTISKERKLL 142 (229)
T ss_pred HHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 78888999999854 455799999999999999999999999999999999999876531 12345556666
Q ss_pred HHHHHHHHHHhhhhcCCC---CChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhHHH
Q 018995 167 EAQAIEVSKRQAKVRETP---GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT 242 (348)
Q Consensus 167 E~Qa~eV~rRq~k~res~---gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeAER~ 242 (348)
|.--.+.--.++|.+-+. ..+..-..|+.||.|..+-+. .|...|-.|-. .- =-+.-|.+.|+|+.+
T Consensus 143 e~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E-------~a~~~M~~i~~~~~--~~~~~L~~lv~AQl~ 213 (229)
T cd07594 143 ENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAE-------ITKLLLEGISSTHA--NHLRCLRDFVEAQMT 213 (229)
T ss_pred HHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCc--hHHHHHHHHHHHHHH
Confidence 655444333333333221 112344567777777776543 33444443321 11 124568899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018995 243 YHQRVLQILDQLEGE 257 (348)
Q Consensus 243 YHqrv~~ILd~L~~e 257 (348)
||....+||..|..+
T Consensus 214 Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 214 YYAQCYQYMDDLQRQ 228 (229)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999764
No 19
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=96.70 E-value=0.14 Score=48.20 Aligned_cols=148 Identities=19% Similarity=0.265 Sum_probs=101.8
Q ss_pred hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
.-|++.--+||.+=. .++.+..|-..||.|.++|=..|..+---..+-+.+||+....+- -.-|..-|.-
T Consensus 67 ~~Lg~~M~~~G~elg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~d--------ik~i~k~RKk 136 (223)
T cd07613 67 ALLAEAMLKFGRELG--DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKD--------LREIQHHLKK 136 (223)
T ss_pred hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 457777788888854 455799999999999999999999999999999999999764321 1134445555
Q ss_pred HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH---HHHhhHHHHHHHHHHHHhHHH
Q 018995 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERT 242 (348)
Q Consensus 166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeAER~ 242 (348)
.|..-.+.--.+.|.+ .. + -.-|+.|+.|..+-+.-.. ..|-.+ |.-| +.=|.+.|||+=.
T Consensus 137 Le~rRLd~D~~K~r~~--k~-~--eeElr~A~~kFees~E~a~-------~~M~n~l~~e~e~----~~~L~~fveAQl~ 200 (223)
T cd07613 137 LEGRRLDFDYKKKRQG--KI-P--DEELRQALEKFDESKEIAE-------SSMFNLLEMDIEQ----VSQLSALVQAQLE 200 (223)
T ss_pred HHHHHHhHHHHHHhCC--CC-c--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHcCchH----HHHHHHHHHHHHH
Confidence 5544433332222221 11 1 3457888888887665332 222221 1111 2368899999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018995 243 YHQRVLQILDQLEGEML 259 (348)
Q Consensus 243 YHqrv~~ILd~L~~eMv 259 (348)
||+..++||..|..++.
T Consensus 201 Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 201 YHKQATQILQQVTVKLE 217 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999886
No 20
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=96.59 E-value=0.14 Score=48.20 Aligned_cols=183 Identities=15% Similarity=0.242 Sum_probs=123.6
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccceeeeec--c-------------ee--ehhhhhhhhhhhhccCCCCCCCchHHHH
Q 018995 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG--S-------------KQ--VEIGTKLSEDSRKYGSDNTCTSGNTLSK 109 (348)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~g--s-------------Kq--~Ei~~KLaeDc~KYG~en~~~~~~~Lar 109 (348)
.++|++.--+|+.+ =.+|++.+|-|+--- + +. .--..-|++..-+||.+=. .++.+..
T Consensus 19 f~~l~~~~D~tk~~---~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g--~~s~~G~ 93 (220)
T cd07617 19 FENLLARADSTKNW---TEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFG--PGTPYGK 93 (220)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcC--CCCchHH
Confidence 45666666666543 345666665554221 1 00 1123448888889998854 4556999
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhh
Q 018995 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDL 189 (348)
Q Consensus 110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~ 189 (348)
|-..||.|..+|=.-|..+.-...+-..+||+.-..+- -.-|..-|.-+|..-.+.-..++|.+. +|
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~d--------lk~i~k~RKkLe~rRLd~D~~K~r~~k----ae- 160 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGD--------WKTISKERRLLQNRRLDLDACKARLKK----AE- 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc----cH-
Confidence 99999999999999999999999999999999766532 124566777777766666555555542 34
Q ss_pred hhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH-HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995 190 ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (348)
Q Consensus 190 ~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV-EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e 257 (348)
-.|+.|+.|..+-+. .+. ..|--| +..-- -+.=|.+.|+|...||....+||..|..+
T Consensus 161 -~elr~A~~kf~~~~E-~a~------~~M~~il~~~~e--~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 161 -HELRVAQTEFDRQAE-VTR------LLLEGISSTHVN--HLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred -HHHHHHHHHHHHHHH-HHH------HHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378899999887554 322 223322 11001 24568899999999999999999999865
No 21
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=96.53 E-value=0.25 Score=47.08 Aligned_cols=194 Identities=14% Similarity=0.236 Sum_probs=124.2
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccceeeeecc---------eeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHH
Q 018995 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGS---------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117 (348)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gs---------Kq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a 117 (348)
.++|||---+||..= -+|+|..+.+. -|. |.+ -..-|++.--+||.+=. .++.+.+|-..||.+
T Consensus 17 ~~~le~r~D~~k~~~---~~i~k~~~~~l-qpnp~~r~ek~~kk~-p~~~Lgq~M~e~~~~lg--~~s~~g~aL~~~gea 89 (246)
T cd07618 17 LLQIERRLDTVRSVS---HNVHKRLIACF-QGQVGTDAEKRHKKL-PLTALAQNMQEGSAQLG--EESLIGKMLDTCGDA 89 (246)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHc-CCChHHHHHHHhccC-CHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHH
Confidence 355666655555432 35555555553 111 111 14456777778888854 355699999999999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCC-hhhhhh--
Q 018995 118 RAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV--RETPGN-PDLALK-- 192 (348)
Q Consensus 118 ~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~--res~gn-~e~~~K-- 192 (348)
-+.+=.+|-++=-.+-..|.+||+....+- |-++-+....-...|-+.+ ..|+|.+. +.+++| ..+..|
T Consensus 90 ~~kla~~~~~~d~~ie~~fl~PL~~~le~d-lk~I~K~RkkLe~~RLD~D-----~~K~r~~~a~~~~~~~~~~~~~K~~ 163 (246)
T cd07618 90 ENKLAFELSQHEVLLEKDILDPLNQLAEVE-IPNIQKQRKQLAKLVLDWD-----SARGRYNQAHKSSGTNFQAMPSKID 163 (246)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhHHhhHH-----HHHHHHHhccccCccccccccchhh
Confidence 999999988888888889999999887743 2234444444444444443 33444331 112222 122345
Q ss_pred -----hHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 018995 193 -----LDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSE 261 (348)
Q Consensus 193 -----Lq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMvsE 261 (348)
+..|+.|+.+-|...+. ++-.-| +=|..+ +.=|+..|+|=..||...++||+++..+|-.=
T Consensus 164 ~l~ee~e~a~~k~E~~kD~~~~---dm~~~l-~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~ 229 (246)
T cd07618 164 MLKEEMDEAGNKVEQCKDQLAA---DMYNFA-SKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQAH 229 (246)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHH-HcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888877766 444443 223333 34588999999999999999999999888543
No 22
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=96.51 E-value=0.28 Score=45.68 Aligned_cols=153 Identities=16% Similarity=0.277 Sum_probs=104.4
Q ss_pred hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHH
Q 018995 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (348)
Q Consensus 85 ~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ 164 (348)
..-|++.--.||.+=+ .++.++.|-..||.|.++|-..++.|..-+.+-+.+||+-.+. |-+ -|.+-|.
T Consensus 53 ~~~Lg~~M~~~g~~lg--~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-----~~k----~i~k~RK 121 (215)
T cd07593 53 VEALGLVMINHGEEFP--QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-----EMK----EYHSARK 121 (215)
T ss_pred HHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHHH
Confidence 4567777778888854 4557999999999999999999999999999999999986652 322 4666777
Q ss_pred HHHHHHHHHHHHhhhhcCCC-CChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhHHH
Q 018995 165 EAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT 242 (348)
Q Consensus 165 EaE~Qa~eV~rRq~k~res~-gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeAER~ 242 (348)
-+|..-.+.--.++|.+.+. ..+..-.-|+.|+.|..+-+.- |...|-.|-. .-. -+.=|...|+|.-.
T Consensus 122 kLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e--~~~~L~~lv~AQl~ 192 (215)
T cd07593 122 KLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSED-------VEARMVAIKESEAD--QYRDLTDLLDAELD 192 (215)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChH--HHHHHHHHHHHHHH
Confidence 77776666555554443221 1122233455677777665433 3333433321 011 13457889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018995 243 YHQRVLQILDQLEGE 257 (348)
Q Consensus 243 YHqrv~~ILd~L~~e 257 (348)
||+..++||..|..+
T Consensus 193 Yh~q~~e~L~~l~~~ 207 (215)
T cd07593 193 YHQQSLDVLREVRQS 207 (215)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999843
No 23
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.49 E-value=0.26 Score=45.67 Aligned_cols=182 Identities=13% Similarity=0.234 Sum_probs=135.6
Q ss_pred HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhH
Q 018995 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (348)
Q Consensus 48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~ 127 (348)
.+|+||+..-+.--+.+++-+.+...|+. |- .|-++||++.. ..+++| ..|+.+-..|+..|+.
T Consensus 16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-~l----------~d~~~~~~~De-~i~~~l----~kF~~~l~ei~~~~~~ 79 (200)
T cd07638 16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-GI----------RDLAQYSSKDA-VIETSL----TKFSDTLQEMINYHTI 79 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH----------HHHHHhCCcch-hhHHHH----HHHHHHHHHHHHHHHH
Confidence 57888888877777777776665555431 11 24456777765 234444 5599999999999999
Q ss_pred HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHH
Q 018995 128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207 (348)
Q Consensus 128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~M 207 (348)
|+.-...-+..||..-+.. .|-+++-...+||+..++-++-..--++=- |.| ..-++.|+.-|.--++..
T Consensus 80 L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~~~aL~K~~~~~-k~k--------~~e~eEa~~~l~~~r~~F 149 (200)
T cd07638 80 LFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEKENALVKNAQVQ-RNK--------QHEVEEATNILTATRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHhccCC-cCc--------hHHHHHHHHHHHHHHHHH
Confidence 9999999999999887764 567899999999999987665433222111 111 133477777888888888
Q ss_pred HHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 208 a~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
.-..-+=..++..|++-.-=-=|+.|++.+.|=.+|...--++|++++
T Consensus 150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~ 197 (200)
T cd07638 150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELG 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 877788888999998877777779999999999999999999998876
No 24
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.26 E-value=0.64 Score=39.81 Aligned_cols=164 Identities=13% Similarity=0.190 Sum_probs=112.8
Q ss_pred hhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 018995 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (348)
Q Consensus 87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 166 (348)
.|+.-|..++....... ..|+.+-..+|.+...+=.-.+.+....-..+.+||+-++.-. .-+|.+-.+.+++.++.
T Consensus 43 elg~~~~~Ls~~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~--~s~k~~l~~R~~~~~~~ 119 (218)
T cd07596 43 EFGKALIKLAKCEEEVG-GELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYC--QAVKETLDDRADALLTL 119 (218)
T ss_pred HHHHHHHHHHhhccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34444445555433111 2589999999999999988899999999999999999988432 23555556655666666
Q ss_pred HHHHHHHHHHhh---hhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHH-------HHHH
Q 018995 167 EAQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIAM 236 (348)
Q Consensus 167 E~Qa~eV~rRq~---k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQR-------LiaM 236 (348)
+.--..+.+.+. |.+.+++ -+..|...++.++.++...+..+-+..-..-..+..+=.|..-.| |..+
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~--~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~ 197 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPG--IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEF 197 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443 3443332 223578888888888888887777777666666666666665555 6778
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 018995 237 VEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 237 VeAER~YHqrv~~ILd~L~ 255 (348)
++....||+.+++++..+.
T Consensus 198 ~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 198 ARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 8899999999999988763
No 25
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=96.20 E-value=0.0033 Score=45.21 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=20.8
Q ss_pred ecccCCCCCCceeeeeeCCEEEEEe
Q 018995 311 VVHPYQAESDVELTLSVGDYVVVRK 335 (348)
Q Consensus 311 v~hpF~aesegELsLsvGDyVVVRq 335 (348)
|+|+|.++.+.||||..||.|.|-.
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~ 25 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLE 25 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEE
Confidence 6899999999999999999998754
No 26
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=96.07 E-value=0.52 Score=44.45 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=102.8
Q ss_pred hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
.-|++.--+||.+=. .++.+..|-..||.|..++=..+..+.--..+-+.+||+....+- -.-|..-|.-
T Consensus 67 ~~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk 136 (223)
T cd07615 67 GLLGDCMLRYGRELG--EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKD--------LKEIGHHLKK 136 (223)
T ss_pred hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 357777778888854 455699999999999999999999999999999999999654332 1134455555
Q ss_pred HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH---HHHhhHHHHHHHHHHHHhHHH
Q 018995 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERT 242 (348)
Q Consensus 166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeAER~ 242 (348)
.|..-.+.--.+.| .+. . .-.-++.|+.|+.|-+.- |...|-.+ |.-| +.=|.+.|+|+=.
T Consensus 137 Le~rRLd~D~~K~r--~~k-~--~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~ 200 (223)
T cd07615 137 LEGRRLDFDYKKKR--QGK-I--PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALD 200 (223)
T ss_pred HHHHHHHHHHHHHc--CCC-C--cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHH
Confidence 55544443333223 222 1 244577888888876643 33344332 1122 3457899999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018995 243 YHQRVLQILDQLEGEML 259 (348)
Q Consensus 243 YHqrv~~ILd~L~~eMv 259 (348)
||+..++||..|..++.
T Consensus 201 Yh~~a~eiL~~l~~~l~ 217 (223)
T cd07615 201 YHRQSTEILEDLQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998876
No 27
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=95.96 E-value=0.23 Score=46.40 Aligned_cols=186 Identities=11% Similarity=0.218 Sum_probs=137.6
Q ss_pred hhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCC---CCCCCch-HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhh
Q 018995 61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD---NTCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQV 136 (348)
Q Consensus 61 KhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~e---n~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV 136 (348)
.+|=+.|++..=++|..|..=.---.+++..-+-++-+ ++.+.+. .++.+-..|+.+-..||++|+.|+.--...+
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l 94 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777766554444445566666666622 1112332 3778888999999999999999999999999
Q ss_pred hhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHH
Q 018995 137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA 216 (348)
Q Consensus 137 ~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~a 216 (348)
..||-.-+- -+|-.++--..+|||..+.-++-..-.+-=..|.| + ..++.|+.-|.--+++.--..-+=+.
T Consensus 95 ~~~L~~F~k-edi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K------~--~~~eEA~~~L~~~r~~F~~~sLdYV~ 165 (207)
T cd07636 95 ITPLEKFRK-EQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKK------E--SQLHEADSQVDLVRQHFYEVSLEYVF 165 (207)
T ss_pred HHHHHHHHH-HHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCC------c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988765 46678999999999999998875443331111111 1 26899999999999998888888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 217 AM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
.+..|++-.-===++.|++.+.|=.+|...--+++.++.
T Consensus 166 qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 166 KVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 888888776666679999999999999988888887764
No 28
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=95.75 E-value=0.0092 Score=40.30 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=27.2
Q ss_pred eeEEecccCCCCCCceeeeeeCCEEEEEee
Q 018995 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV 336 (348)
Q Consensus 307 Flaev~hpF~aesegELsLsvGDyVVVRqV 336 (348)
+.+.|+++|++..++||+|.+||.|.|..-
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~ 32 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEK 32 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEc
Confidence 567899999999999999999999988765
No 29
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=95.74 E-value=0.42 Score=44.71 Aligned_cols=140 Identities=11% Similarity=0.219 Sum_probs=109.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 018995 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGN 186 (348)
Q Consensus 107 LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn 186 (348)
++..-..|+++...++.+|+-|+.-+...+..||-.-+- -+|-.++-...+||+-..+-++-..-.++=.+|.|+.
T Consensus 65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~k-edl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~--- 140 (207)
T cd07635 65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRK-EQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP--- 140 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc---
Confidence 467778999999999999999999999999999988754 4678899999999999999998776655554444421
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 187 ~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
-++.|+.-|.--++..--..-+=+.++..|++-..===|+.|++.+.|=.+|...--++|.++.
T Consensus 141 -----e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 141 -----QLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 2456777666666666655556667777777666555678899999999999888888887764
No 30
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=95.72 E-value=0.0091 Score=41.94 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.8
Q ss_pred EecccCCCCCCceeeeeeCCEEEEEeecc
Q 018995 310 EVVHPYQAESDVELTLSVGDYVVVRKVHN 338 (348)
Q Consensus 310 ev~hpF~aesegELsLsvGDyVVVRqVs~ 338 (348)
.|+++|+++.++|||+..||.|.|-+...
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~ 29 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSD 29 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESS
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecC
Confidence 47999999999999999999999977543
No 31
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=95.58 E-value=0.011 Score=39.71 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=25.9
Q ss_pred EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995 309 GEVVHPYQAESDVELTLSVGDYVVVRKV 336 (348)
Q Consensus 309 aev~hpF~aesegELsLsvGDyVVVRqV 336 (348)
+.++++|.+..++||+|.+||.|.|-+.
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~ 29 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEK 29 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEc
Confidence 5789999999999999999999998876
No 32
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=94.95 E-value=3.4 Score=39.05 Aligned_cols=151 Identities=20% Similarity=0.319 Sum_probs=99.0
Q ss_pred hhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
.-|++.--+||.+=. .++.++.|-..||.|...|=..|..+--.+.+-+.+||+.-..+- -..|..-|.-
T Consensus 67 ~~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKk 136 (223)
T cd07614 67 GLLGETMIRYGKELG--DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKD--------LKEIQHHLKK 136 (223)
T ss_pred hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 347777788998854 455699999999999999999999999999999999999765321 2245556666
Q ss_pred HHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 018995 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ 245 (348)
Q Consensus 166 aE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHq 245 (348)
+|..-.+.--.+.| .+. .++ .-|+.|..|..+-+. .|...|-.|-.=. -=-+.=|...|+|.=.||+
T Consensus 137 Le~rRLdyD~~K~r--~~k-~~e--eelr~a~ekFees~E-------~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~ 203 (223)
T cd07614 137 LEGRRLDFDYKKKR--QGK-IPD--EELRQAMEKFEESKE-------VAETSMHNLLETD-IEQVSQLSALVDAQLDYHR 203 (223)
T ss_pred HHHHHHHHHHHHHc--CCC-Cch--HHHHHHHHHHHHHHH-------HHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence 66554443333222 222 222 234444445444332 2233333221100 0013458899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018995 246 RVLQILDQLEGEML 259 (348)
Q Consensus 246 rv~~ILd~L~~eMv 259 (348)
..++||..|..++.
T Consensus 204 qa~eiL~~l~~~l~ 217 (223)
T cd07614 204 QAVQILDELAEKLK 217 (223)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 33
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.90 E-value=2.6 Score=39.63 Aligned_cols=196 Identities=17% Similarity=0.250 Sum_probs=126.5
Q ss_pred CCCcceechHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHH
Q 018995 33 GSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL 112 (348)
Q Consensus 33 ~~d~~v~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~ 112 (348)
..|..+-|+ -++.+.||+ ++|..|||.-+=.+.+-....-+.-|...|++ | |+.++ +..+-.++-
T Consensus 8 T~D~~fe~~--~~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~-~--~~~~~----~~~~~~~~e 72 (225)
T cd07590 8 TVDRELERE--VQKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQDLAS-G--PLCED----NDELRNLVE 72 (225)
T ss_pred CCChHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--ccCCC----ChHHHHHHH
Confidence 345555222 234555553 35566776555555544445555667777766 3 65543 123667999
Q ss_pred HhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCh
Q 018995 113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNP 187 (348)
Q Consensus 113 ~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~ 187 (348)
.|...-..|+.=-..++..+.+.|.+||.....=-|.-.++ |...=|||+|..++.- +.|-+ ..
T Consensus 73 ~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl-------~~K~~----k~ 141 (225)
T cd07590 73 ALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKL-------AEKEK----TG 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HhCcc----CC
Confidence 99999999996668889999999999998887666654443 4556688888777633 23322 12
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHH---HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995 188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (348)
Q Consensus 188 e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e 257 (348)
.+-.||..||..+..-+...-.+..+.-.=|-.. ...-=.-+||-|+.| +-.||.-.-.++.+|..-
T Consensus 142 ~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~---Ql~f~~e~~k~~~~l~~~ 211 (225)
T cd07590 142 PNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKS---QVLYYSQSTKIFTQLAPN 211 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 2368999999999998888777765544333221 112223355666555 669999999999888753
No 34
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=94.79 E-value=2.2 Score=39.73 Aligned_cols=174 Identities=22% Similarity=0.239 Sum_probs=116.0
Q ss_pred hchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhh
Q 018995 59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE 138 (348)
Q Consensus 59 aaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e 138 (348)
++|-+|||+-+=.+.+-..-.-|+.|+.-|++=| +... +| ...+......++.=-.++...|.++|..
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY---~p~~---~~------~~~~~~v~e~~d~~~~~l~~~l~~~Vl~ 94 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKELY---EPDW---PG------REHLASIFEQLDLLWNDLEEKLSDQVLG 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcc---cc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999987777777666677777777775433 3332 22 1233445666666667788889999999
Q ss_pred HHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHH
Q 018995 139 PLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE 213 (348)
Q Consensus 139 PLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKE 213 (348)
||.....=-|--..| |=..=|||+|..++.- +.| +. .+..||..||.+|+..+..-..|..+
T Consensus 95 Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL-------~~K----~~--kde~KL~kae~el~~Ak~~Ye~lN~~ 161 (211)
T cd07588 95 PLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEAL-------KAK----KK--VDDQKLTKAEEELQQAKKVYEELNTE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHH-------Hhc----cc--ccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999887555543332 2223499999888754 222 21 34789999999999998888777665
Q ss_pred HHHHHHHHHHHhhHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018995 214 AAAAMAAVESQQQRLTL--QRLIAMVEAERTYHQRVLQILDQLEGEML 259 (348)
Q Consensus 214 A~aAM~aVEaQQQrlTl--QRLiaMVeAER~YHqrv~~ILd~L~~eMv 259 (348)
=--=|-..= +-|+.| -=+-+++-++-.||.-+..+..+|.+-|.
T Consensus 162 L~~ELP~L~--~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~ 207 (211)
T cd07588 162 LHEELPALY--DSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD 207 (211)
T ss_pred HHHHhHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333322 223332 23446677899999999999999988774
No 35
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.20 E-value=2 Score=40.23 Aligned_cols=146 Identities=12% Similarity=0.189 Sum_probs=110.2
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 018995 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE 182 (348)
Q Consensus 103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~re 182 (348)
.+..+.-+-..|+.+-..|+..|+.|..-+..-+..||-.-+.+ .|-+++-+..+||+-..+-++-..-.++=..| |.
T Consensus 59 dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~-k~ 136 (215)
T cd07601 59 DDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSKK-RE 136 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC-CC
Confidence 34445557778999999999999999999999999999988876 56889999999999999999855544432111 10
Q ss_pred CCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHH
Q 018995 183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG 256 (348)
Q Consensus 183 s~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd-~L~~ 256 (348)
++.. .+.|+.-|.--++...-..-+=..++..|++-..===|+.|++.+.|=.+|.+.--++|. +++.
T Consensus 137 ---~~~~---~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p 205 (215)
T cd07601 137 ---NTKV---KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE 205 (215)
T ss_pred ---chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 246666666666666666666677888887766666679999999999999999999987 6653
No 36
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.73 E-value=6.3 Score=37.28 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=56.5
Q ss_pred hhhhhhhhhhhhccCCCC----CCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcC------------
Q 018995 83 EIGTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG------------ 146 (348)
Q Consensus 83 Ei~~KLaeDc~KYG~en~----~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G------------ 146 (348)
|-+.||..-|.||..--. ..+..++-.|..-+=+.-..+=.+|+.+-.-|.++|++||..++.-
T Consensus 37 eYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~ 116 (253)
T cd07676 37 SYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDG 116 (253)
T ss_pred HHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557789999999965421 0112245555555444333444899999999999999999877761
Q ss_pred ----CCchhh----hhHHHHHHHHHHHHHHHH
Q 018995 147 ----APLDDA----RHLAQRYDRMRQEAEAQA 170 (348)
Q Consensus 147 ----aPLEDA----RhLaqRYdRmRQEaE~Qa 170 (348)
.|++.. .--..+|++.++|+|.-.
T Consensus 117 ~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~ 148 (253)
T cd07676 117 RKAQQHIETCWKQLESSKRRFERDCKEADRAQ 148 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122211 113568888899888653
No 37
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.59 E-value=7.7 Score=37.81 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=98.8
Q ss_pred hhhhhhhhccCCCCCCCchHHHHHHHHhHHHH-HHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 018995 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (348)
Q Consensus 87 KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~-~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 165 (348)
.|++---+||.+=+ .++.|.+|- ..|-+. ++|=.+..++---+-..|.+||--... --|-+.-|...+-.++|.+
T Consensus 61 ~Ls~~M~es~keLg--~dS~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e-~dL~~I~k~rKkL~k~~LD 136 (257)
T cd07620 61 ALSISMAESFKDFD--AESSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE-EDLPEILKNKKQFAKLTTD 136 (257)
T ss_pred HHHHHHHHHHhhCC--CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHhHHhh
Confidence 34444467777754 234466666 777776 999999999999999999999988766 2233455555666777777
Q ss_pred HHHHHHHHHHHhh-h-hcC--CCCCh----------hhhhh-------hHHHHHhHHHHHHHHHHhcHHHHHHHHH---H
Q 018995 166 AEAQAIEVSKRQA-K-VRE--TPGNP----------DLALK-------LDAAEVKLHDLKSNMAILGKEAAAAMAA---V 221 (348)
Q Consensus 166 aE~Qa~eV~rRq~-k-~re--s~gn~----------e~~~K-------Lq~AE~Kl~ELks~Ma~LGKEA~aAM~a---V 221 (348)
...- |+|. + .+. .+||. .+..| ++.|+.|+.+-|.. +++.|-. =
T Consensus 137 ~D~~-----K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~k 204 (257)
T cd07620 137 WNSA-----KSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATK 204 (257)
T ss_pred HHHH-----HHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 6553 2222 1 111 12221 23466 34555555554432 3333322 2
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018995 222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQR 264 (348)
Q Consensus 222 EaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eMvsErq~ 264 (348)
|..|- .=|+..||+=..||++.++||+.+..+|-.---.
T Consensus 205 E~e~a----~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~~~~~ 243 (257)
T cd07620 205 EDSYA----NYFIRLLELQAEYHKNSLEFLDKNITELKENHSQ 243 (257)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22222 2378889999999999999999999998765433
No 38
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.07 E-value=7.5 Score=36.14 Aligned_cols=158 Identities=17% Similarity=0.255 Sum_probs=100.3
Q ss_pred hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcC-CCchhhhhHH-HHHHHH
Q 018995 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLA-QRYDRM 162 (348)
Q Consensus 85 ~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G-aPLEDARhLa-qRYdRm 162 (348)
+.-||.-|.-||+.- + ..|++|-..|+..-..|+-=|+.-...+-..|.+||+..++= ...-|++..+ ..|+++
T Consensus 41 ~~~fak~~~~la~~E---~-~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~ 116 (211)
T cd07598 41 GDELAKSINAYADTE---N-PSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKE 116 (211)
T ss_pred HHHHHHHHHHHHhcc---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888753 2 359999999999999999888888888888999999875432 2233333211 122332
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH-HHHH-HHHHHHhH
Q 018995 163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL-TLQR-LIAMVEAE 240 (348)
Q Consensus 163 RQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl-TlQR-LiaMVeAE 240 (348)
.+ -.+.-.|.|.. ||.+-.++..||++|+.-+.-.....+.---=|.-- +++|+ .|+. |...|+.|
T Consensus 117 ~~--------~~~~leklk~~--~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rF--e~~k~~d~K~~l~~fv~~~ 184 (211)
T cd07598 117 LK--------QLKQLEKLRQK--NPSDRQIISQAESELQKASVDANRSTKELEEQMDNF--EKQKIRDIKTIFSDFVLIE 184 (211)
T ss_pred HH--------HHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 22 11223344433 334445777899999987774444444333223322 23333 2333 34889999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018995 241 RTYHQRVLQILDQLEGEM 258 (348)
Q Consensus 241 R~YHqrv~~ILd~L~~eM 258 (348)
=.||..+++++..+...+
T Consensus 185 m~~~~kale~~~~~~~~~ 202 (211)
T cd07598 185 MLFHAKALEVYTAAYQDI 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887654
No 39
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=92.80 E-value=0.093 Score=37.79 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=22.7
Q ss_pred eEEecccCCCCCCceeeeeeCCEEEEE
Q 018995 308 LGEVVHPYQAESDVELTLSVGDYVVVR 334 (348)
Q Consensus 308 laev~hpF~aesegELsLsvGDyVVVR 334 (348)
++.|+.+|.++...||||..||.|.|-
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~ 27 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVL 27 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEE
Confidence 467999999999999999999999885
No 40
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=92.57 E-value=7.1 Score=34.58 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=95.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 018995 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP 184 (348)
Q Consensus 105 ~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~ 184 (348)
..|+++-..||.+...+-.=.+.+....-....+||+-.+.-.. =+|.+-.+=+++..+-+.-..++.|++.....-.
T Consensus 78 ~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~--svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 78 KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE--SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45899999999888777666666655555667778876654322 3344434444555667777777777776654433
Q ss_pred CCh-hhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 185 GNP-DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL-------QRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 185 gn~-e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTl-------QRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
+++ ...-|+..++..+.+++..+..+-++--..-..+-.-=.|.-- .=|..+++..-.||+.++++...+.
T Consensus 156 ~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 156 ASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFL 234 (236)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 332 2357888888888888888877766655444444332233322 2356778888888888888877654
No 41
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=89.39 E-value=23 Score=34.87 Aligned_cols=139 Identities=21% Similarity=0.329 Sum_probs=94.7
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHH--HHHHHHHhhhh
Q 018995 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ--AIEVSKRQAKV 180 (348)
Q Consensus 103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Q--a~eV~rRq~k~ 180 (348)
..+.|++|-..|+.+...|..-|-.+-..+-++.-.||+.-+. .--..=.++|+.++.- -.|+.|-..|.
T Consensus 146 ~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln--------~~~~~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 146 DEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLN--------TDFKKANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3357999999999999999999999999999999999987543 2223344556666554 45667776665
Q ss_pred cCCCCChh-hhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018995 181 RETPGNPD-LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 258 (348)
Q Consensus 181 res~gn~e-~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~eM 258 (348)
+..|-+.+ .-..|+.||- -++.-=.+|+.-|-.|=.-=- -+.-|-.+|.|=..||+..+++|..|-.++
T Consensus 218 ~~~pekee~~r~~lE~aED-------eFv~aTeeAv~~Mk~vl~~~e--~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 218 KAKPEKEEQLRVELEQAED-------EFVSATEEAVEVMKEVLDNSE--PLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred cCCcccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32232322 2334455554 333334577777766543222 235677899999999999999999886543
No 42
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.44 E-value=21 Score=33.93 Aligned_cols=181 Identities=10% Similarity=0.165 Sum_probs=96.5
Q ss_pred hhhhhccceeeeecceeehhhhhhhhhhhhccCCCC---CCCch-HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHH
Q 018995 65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL 140 (348)
Q Consensus 65 rdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~---~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL 140 (348)
++||+-.-|.|.+|..=.-..++++.-.+-++-+-+ .|.+. .++.+--.||..-..||++|..|+.--...|..||
T Consensus 19 kkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L 98 (207)
T cd07633 19 KDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKPL 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444555555555544411 11222 27888889999999999999999999999999999
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHH
Q 018995 141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA 220 (348)
Q Consensus 141 RaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~a 220 (348)
..-+-- -+.-++--...||+.+.+-++--.-=+-=-.|-| -.-++-|.+-|.--++..--.--+=+--+..
T Consensus 99 ~~F~Ke-di~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K--------~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~ 169 (207)
T cd07633 99 ENFRKE-QIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKK--------ESQLQEADLQVDKERQNFYESSLEYVYQIQE 169 (207)
T ss_pred HHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877641 1122455566788887777654321110000101 1124444444444444443333333333333
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018995 221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (348)
Q Consensus 221 VEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L 254 (348)
|.+..-==-+.=|++.+.|=-+|.+-=-+++.++
T Consensus 170 vQerKKfeive~mLsf~~a~~tf~hqG~el~~df 203 (207)
T cd07633 170 VQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDF 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3322222223455555666655554444444443
No 43
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=85.73 E-value=1 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.8
Q ss_pred EecccCCCCCCceeeeeeCCEEEEEe
Q 018995 310 EVVHPYQAESDVELTLSVGDYVVVRK 335 (348)
Q Consensus 310 ev~hpF~aesegELsLsvGDyVVVRq 335 (348)
++..+|.+++-.|||+.+||.|-+-+
T Consensus 1055 ~A~Y~y~gq~~dEls~~~~diIei~~ 1080 (1106)
T KOG0162|consen 1055 EALYDYPGQDVDELSFKKGDIIEIMR 1080 (1106)
T ss_pred eeeccCCCCCcccccccCCCEEEEec
Confidence 56899999999999999999986543
No 44
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=82.42 E-value=37 Score=30.60 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=86.1
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCC---CchHHHHHHHHhHHHHHHHHH
Q 018995 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT---SGNTLSKAALSYGRARAQMEK 123 (348)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~---~~~~LarAa~~yg~a~~~mEk 123 (348)
|-.+.+...|.++--..|.+++...++++.... -+.+.+.. ...++. ....|..+...|..
T Consensus 22 ~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~---------------~~~~~~~~~~~~~~~~~-~~~~y~~~~~~l~~ 85 (216)
T cd07599 22 IEQSKAFRDSWRSILTHQIAFAKEFAELYDPIV---------------GPKESVGSHPAPESTLA-RLSRYVKALEELKK 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC---------------CCCcCcCCCCCcHHHHH-HHHHHHHHHHHHHH
Confidence 334445555566666777777777777654211 11121110 122233 34557888888877
Q ss_pred HHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHH-------HHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHH
Q 018995 124 ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA 196 (348)
Q Consensus 124 Ere~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqR-------YdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~A 196 (348)
+=...+..+.+.|..|+..+..= +.+.+.+-.+ |||+|...+. ..+.|. +.++..-.||..|
T Consensus 86 ~~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k------~~~~k~---~~~~kd~~kl~ka 154 (216)
T cd07599 86 ELLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK------LLQKKK---ELSLKDEKQLAKL 154 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH------HHhcCC---CCChhHHHHHHHH
Confidence 77777889999999999998863 4444444443 6666666654 133331 2245668899999
Q ss_pred HHhHHHHHHHHHHhcH
Q 018995 197 EVKLHDLKSNMAILGK 212 (348)
Q Consensus 197 E~Kl~ELks~Ma~LGK 212 (348)
|.+|.+.+.....|..
T Consensus 155 e~~l~~a~~~y~~lN~ 170 (216)
T cd07599 155 ERKLEEAKEEYEALNE 170 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988877766654
No 45
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=82.04 E-value=40 Score=30.74 Aligned_cols=193 Identities=19% Similarity=0.300 Sum_probs=120.9
Q ss_pred HHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhH
Q 018995 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (348)
Q Consensus 48 Q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~ 127 (348)
--||+|.. +|+.||+ ++.+.+.+|.-=.+-.-|+++-|-+ +. .+. -|.-+-..+...+..+|.+++.
T Consensus 10 P~~e~lv~---~~~kY~~----al~~~~~a~~~f~dal~ki~~~A~~--s~---~s~-~lG~~L~~~s~~~r~i~~~~~~ 76 (219)
T PF08397_consen 10 PAWENLVS---LGKKYQK----ALRAMSQAAAAFFDALQKIGDMASN--SR---GSK-ELGDALMQISEVHRRIENELEE 76 (219)
T ss_dssp HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT--SS---SHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC--CC---ccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 4566654 3456666666667777788776653 11 122 3777778888999999999999
Q ss_pred HHHHHhhhhhhHHHHhhcCCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHH
Q 018995 128 LLKALGTQVAEPLRAMVLGAPL---DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLK 204 (348)
Q Consensus 128 l~r~L~~QV~ePLRaMv~GaPL---EDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELk 204 (348)
+.+.|-+.+.-||..=+-.-.= ..=++...-|.+.+.+.+-...|..|=+.|.+. |..+.-..+..+-..+.+..
T Consensus 77 ~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k--gk~~~~~~~~~~~~~v~~~~ 154 (219)
T PF08397_consen 77 VFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK--GKDDQKYELKEALQDVTERQ 154 (219)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCccccHHHHHHHHHHHHHH
Confidence 9999999999999865532111 011223455667777777777776665555553 23334444555544555555
Q ss_pred HHHHHhcHHHHHHHHHHHHHhhHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995 205 SNMAILGKEAAAAMAAVESQQQRLT--LQRLIAMVEAERTYHQRVLQILDQLEGE 257 (348)
Q Consensus 205 s~Ma~LGKEA~aAM~aVEaQQQrlT--lQRLiaMVeAER~YHqrv~~ILd~L~~e 257 (348)
+-|...=+++- =.|+-...-|-. +.++-..|..|=+||-...++|...=..
T Consensus 155 ~ele~~~~~~~--r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~ 207 (219)
T PF08397_consen 155 SELEEFEKQSL--REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDD 207 (219)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55554333332 333444555555 4888899999999999877777655433
No 46
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=81.24 E-value=0.88 Score=47.37 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.9
Q ss_pred eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK 335 (348)
Q Consensus 306 yFlaev~hpF~aesegELsLsvGDyVVVRq 335 (348)
.-.|.+++.|.+++-+||+|..||.|+|++
T Consensus 230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~r 259 (489)
T KOG4225|consen 230 KRAARALFDFEAQTPKELPFNKGDIVYILR 259 (489)
T ss_pred cchhhheeccccCCccccccCCCCEEEEEe
Confidence 345999999999999999999999998764
No 47
>PRK04406 hypothetical protein; Provisional
Probab=80.92 E-value=14 Score=29.60 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH
Q 018995 195 AAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228 (348)
Q Consensus 195 ~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl 228 (348)
.-|+++.+|.+-++-+..---.-=-.|-.||+.|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766553333233444455554
No 48
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=80.84 E-value=54 Score=31.38 Aligned_cols=180 Identities=16% Similarity=0.287 Sum_probs=118.5
Q ss_pred eeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhh
Q 018995 74 YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (348)
Q Consensus 74 fis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR 153 (348)
+...|.-+++--.-+++--++-|.--.|..+..++++-+.||.....|-+=..+|+--+..=|.-||-..+-| -|-+-+
T Consensus 28 ~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~vK 106 (215)
T cd07642 28 IHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGVK 106 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhH
Confidence 3455666666666666666676764223345568999999999999999988888888888899999998875 233445
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHH-HHhHHHHHHHHHHhcHHHHH---HHHHHHHHhhHH
Q 018995 154 -HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA-EVKLHDLKSNMAILGKEAAA---AMAAVESQQQRL 228 (348)
Q Consensus 154 -hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~A-E~Kl~ELks~Ma~LGKEA~a---AM~aVEaQQQrl 228 (348)
.+.+-+|+.|.+-|+-.....+-+.|. +-+.-+.+.+.. |---++|..+=....-+|+- =+..+..-|-+=
T Consensus 107 ~d~KK~fdK~~~dyE~~~~k~ek~~r~~----~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~e 182 (215)
T cd07642 107 GDLKKPFDKAWKDYETKVTKIEKEKKEH----AKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVD 182 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 567779999999998765333222111 011112222221 11123444444445555554 445566555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018995 229 TLQRLIAMVEAERTYHQRVLQILDQLEGEM 258 (348)
Q Consensus 229 TlQRLiaMVeAER~YHqrv~~ILd~L~~eM 258 (348)
=||.|+....|=-+|++.=+..|+.|+-=|
T Consensus 183 iL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 183 LLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 569999999999999999999999998544
No 49
>PRK02119 hypothetical protein; Provisional
Probab=78.21 E-value=24 Score=28.00 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=18.0
Q ss_pred HHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH
Q 018995 196 AEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228 (348)
Q Consensus 196 AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl 228 (348)
.|.++.+|.+-++-...---.-=.+|-.||+.|
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i 39 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVI 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766666543333223444555554
No 50
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.17 E-value=22 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH
Q 018995 196 AEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228 (348)
Q Consensus 196 AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl 228 (348)
.|+++.+|.+-++-...---.-=.+|-.||+.|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I 38 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEM 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766666543332223344455554
No 51
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=76.58 E-value=70 Score=30.29 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=90.7
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 018995 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL-------AQRYDRMRQEAEAQAIEVSKRQAKVRE 182 (348)
Q Consensus 110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL-------aqRYdRmRQEaE~Qa~eV~rRq~k~re 182 (348)
+-......+..+|..++.+.++|-..+..||.-=|- +|.+-+ ++-|.+.|++.+--..|..|=|.|++.
T Consensus 69 ~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e----~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~ 144 (223)
T cd07605 69 ALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLE----LDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQK 144 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333466778899999999999999999998754322 233333 345778888988888888887777775
Q ss_pred CCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018995 183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ 253 (348)
Q Consensus 183 s~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~ 253 (348)
+ |.+....||..+-.-+.+...-|..+=+.+--...-=|--.=.-=+.++-..++.|-+||...-..|.+
T Consensus 145 ~-~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 145 S-GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred c-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566667777777665555555554443333222111111111122377778899999999887777654
No 52
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.12 E-value=8.1 Score=38.12 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 018995 150 DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRET 183 (348)
Q Consensus 150 EDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res 183 (348)
.+---+.|||.|||.|++-...||.+++...+++
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~ 120 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKES 120 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444678999999999999999999998776654
No 53
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.46 E-value=1.1e+02 Score=29.68 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=81.4
Q ss_pred ehhhhhhhhhhhhccCCCCCCCch-HH-HHHHHHhHHHHHHHH---HHHhHHHHHHhhhhhhHHHHhhcCCCchhhh--h
Q 018995 82 VEIGTKLSEDSRKYGSDNTCTSGN-TL-SKAALSYGRARAQME---KERGNLLKALGTQVAEPLRAMVLGAPLDDAR--H 154 (348)
Q Consensus 82 ~Ei~~KLaeDc~KYG~en~~~~~~-~L-arAa~~yg~a~~~mE---kEre~l~r~L~~QV~ePLRaMv~GaPLEDAR--h 154 (348)
-|-+.||..=|+||+.--...... .+ +.+| |-+-...++ .+||.+-.-|.+||+.||-.++ .+|+..| |
T Consensus 36 ~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s--~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~--~~l~~~rk~~ 111 (252)
T cd07675 36 QNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLS--FYNILNELNDYAGQREVVAEEMGHRVYGELMRYS--HDLKGERKMH 111 (252)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCccccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHH
Confidence 366788999999997543211110 11 2222 655555554 6899999999999999998877 4444443 2
Q ss_pred ------H--------------HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhh--hHHHHHhHHHHHHHHHHhcH
Q 018995 155 ------L--------------AQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALK--LDAAEVKLHDLKSNMAILGK 212 (348)
Q Consensus 155 ------L--------------aqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~K--Lq~AE~Kl~ELks~Ma~LGK 212 (348)
| ..+|++.++|+|.--. +.-.+..++. .+| ++-+..+++.=...|. -.|
T Consensus 112 ~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~-------k~~ka~~d~~-~tk~~~eK~k~~~~~~~q~~e-~aK 182 (252)
T cd07675 112 LQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQ-------SYERLDNDTN-ATKSDVEKAKQQLNLRTHMAD-ESK 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCcc-cCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 2467777777775422 2111221111 223 3344444443333332 233
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018995 213 EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (348)
Q Consensus 213 EA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~ 256 (348)
.-=+....+=+. .-.+-||+-+-+|||.|.+
T Consensus 183 n~Y~~~L~~~N~-------------~q~k~Y~e~mP~vfd~lQ~ 213 (252)
T cd07675 183 NEYAAQLQNFNG-------------EQHKHFYIVIPQIYKQLQE 213 (252)
T ss_pred HHHHHHHHHHHH-------------hhHhHHHHHHHHHHHHHHH
Confidence 222222222111 2356799999999999985
No 54
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=70.13 E-value=95 Score=28.96 Aligned_cols=175 Identities=18% Similarity=0.220 Sum_probs=100.8
Q ss_pred hhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHH-Hhhhh
Q 018995 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKA-LGTQV 136 (348)
Q Consensus 58 RaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~-L~~QV 136 (348)
.+++-+||++-.=.+.+.+..+-|+.|+.-|++ =|+..... . ...++..|+.+-..+..+-..-+.. +...|
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~---lY~p~~~~-~---~~~~~~~y~~~v~~l~~~~~~el~~~~~~~V 97 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS---FYGDAGDK-D---GAMLSQEYKQAVEELDAETVKELDGPYRQTV 97 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCc-c---HhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356778888877777777776666655555543 25555421 1 2457778888888776555444444 88899
Q ss_pred hhHHHHhhcCCCchhhhhHHH-------HHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHH
Q 018995 137 AEPLRAMVLGAPLDDARHLAQ-------RYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAI 209 (348)
Q Consensus 137 ~ePLRaMv~GaPLEDARhLaq-------RYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~ 209 (348)
.+|+-.+..=-| +.+.+-. =|||+|...+.- +.|... + ..||..||.+|.+-+..-..
T Consensus 98 ~~Pl~~~~~~~~--~i~k~IkKR~~KllDYD~~~~k~~kl-------~~K~~k-----d-~~kL~kae~el~~a~~~Ye~ 162 (224)
T cd07591 98 LDPIGRFNSYFP--EINEAIKKRNHKLLDYDAARAKVRKL-------IDKPSE-----D-PTKLPRAEKELDEAKEVYET 162 (224)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHhhHhhHHHHHHHHHHH-------HhcccC-----C-HHHHHHHHHHHHHHHHHHHH
Confidence 999988864333 3333333 388888777643 223221 1 28999999999988877766
Q ss_pred hcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018995 210 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (348)
Q Consensus 210 LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L 254 (348)
|...=-.=|-..=+-..-+--.=+-++|-.+-+||-.+...|..+
T Consensus 163 lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~ 207 (224)
T cd07591 163 LNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQV 207 (224)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654332222221111111111222334455666665555555444
No 55
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=68.69 E-value=93 Score=28.30 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=40.8
Q ss_pred hhhhhhhhhhhhccCCCC-C-CCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhc
Q 018995 83 EIGTKLSEDSRKYGSDNT-C-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (348)
Q Consensus 83 Ei~~KLaeDc~KYG~en~-~-~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 145 (348)
|.+.+|..=|++|..-.. + ..+.++..|-..+=+.-..+-+-+..+-..|.++|.+||..++-
T Consensus 37 eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 37 EYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred HHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777754321 1 01234666655555555556677888888888999999988864
No 56
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=67.60 E-value=1.2e+02 Score=29.14 Aligned_cols=182 Identities=12% Similarity=0.142 Sum_probs=115.3
Q ss_pred HhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhcc---CCCCCCCchHHHHHHHHhHHHHHH
Q 018995 44 LHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG---SDNTCTSGNTLSKAALSYGRARAQ 120 (348)
Q Consensus 44 lq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG---~en~~~~~~~LarAa~~yg~a~~~ 120 (348)
-|.||-+++.|-.|+- . |. .-.++|.--..|- =+- +..+..++.+-..|+.+-..
T Consensus 19 ~~~~~~~~~~~~a~~~-------l----------s~----a~~~~~~~l~~~~~~~f~~-~~dDe~i~~~L~kFs~~L~E 76 (215)
T cd07631 19 NQLFQAMHRIYDAQNE-------L----------SA----ATHLTSKLLKEYEKQRFPL-GGDDEVMSSTLQQFSKVIDE 76 (215)
T ss_pred HHHHHHHHHHHHHHHH-------H----------HH----HHHHHHHHHHHHHHhcCCc-CCCcHHHHHHHHHHHHHHHH
Confidence 4779999999988761 1 00 0123444333443 221 12345688888899999999
Q ss_pred HHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhH
Q 018995 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL 200 (348)
Q Consensus 121 mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl 200 (348)
|+.+|..|..-...-+..||-.-+- -+|..++-+..+|||...+-++--.-.++=..+.++. ..+ +.|+.-+
T Consensus 77 l~~~~~~L~~q~~~sl~~pL~~F~k-edL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E------~~~-eea~~~v 148 (215)
T cd07631 77 LSSCHAVLSTQLADAMMFPITQFKE-RDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENE------KVK-YEVTEDV 148 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCch------HHH-HHHHHHH
Confidence 9999999998888889999988554 5778899999999999999987655544332221110 111 1111111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH-HHHHHH
Q 018995 201 HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQ-ILDQLE 255 (348)
Q Consensus 201 ~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~-ILd~L~ 255 (348)
.--++...-.--+=..++..+++-..=-=++.|++.++|=.+|...--+ ++.+++
T Consensus 149 ~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~ 204 (215)
T cd07631 149 YTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLE 204 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122222222223345666666655555568899999999999888888 444554
No 57
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=64.17 E-value=1.5e+02 Score=28.94 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=59.1
Q ss_pred chHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhh-------hhHHHHHHHHHHHHHHHHHHHHHH
Q 018995 104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA-------RHLAQRYDRMRQEAEAQAIEVSKR 176 (348)
Q Consensus 104 ~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDA-------RhLaqRYdRmRQEaE~Qa~eV~rR 176 (348)
|..|.| +..-|..+|.-+..+++.|-+...-||-.=|- ++. +.-+.-|.|+|+|.---..|..|=
T Consensus 70 G~~Ltr----i~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E----~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~kl 141 (231)
T cd07643 70 GSALTR----MCMRHKSIETKLKQFTSALMDCLVNPLQEKIE----EWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRL 141 (231)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444555 55556679999999999999998877754321 222 334566999999999999999999
Q ss_pred hhhhcCCCCChhhhhhhHHHH
Q 018995 177 QAKVRETPGNPDLALKLDAAE 197 (348)
Q Consensus 177 q~k~res~gn~e~~~KLq~AE 197 (348)
|.|+|... ++.-..|..|.
T Consensus 142 qkk~rKg~--~~~~~~ldsa~ 160 (231)
T cd07643 142 QKKARKGK--GDLQPQLDSAM 160 (231)
T ss_pred HHHHhccC--CccchHHHHHH
Confidence 99999744 44333444433
No 58
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=63.53 E-value=1.3e+02 Score=28.28 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=80.8
Q ss_pred hhhhhhhhhhhhccCCC-CC-CCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCC------Cchhh--
Q 018995 83 EIGTKLSEDSRKYGSDN-TC-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA------PLDDA-- 152 (348)
Q Consensus 83 Ei~~KLaeDc~KYG~en-~~-~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~Ga------PLEDA-- 152 (348)
|-+.+|..=|.+|.... +. +.|++.+.+-..+=+.-...-++|+.+-..|.++|++||..++.-- =.++.
T Consensus 37 EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~k 116 (237)
T cd07657 37 EYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQ 116 (237)
T ss_pred HHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566664432 21 2355555553333344444457889999999999999998776421 11112
Q ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHH
Q 018995 153 ------------RHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA 220 (348)
Q Consensus 153 ------------RhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~a 220 (348)
--..-.|++..+|+|.- |......+..++. .-++++-|..|+++-..-|...=-|=+.++..
T Consensus 117 l~~el~~~~~el~k~Kk~Y~~~~~e~e~A-----r~k~e~a~~~~~~-~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~ 190 (237)
T cd07657 117 IDEQYKKLTDEVEKLKSEYQKLLEDYKAA-----KSKFEEAVVKGGR-GGRKLDKARDKYQKACRKLHLCHNDYVLALLE 190 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555555555542 2211111111111 12344556666655555555543445555555
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018995 221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (348)
Q Consensus 221 VEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~ 255 (348)
....| +.-||+-+=.|||.|.
T Consensus 191 aN~~q--------------~~yY~~~lP~ll~~lQ 211 (237)
T cd07657 191 AQEHE--------------EDYRTLLLPGLLNSLQ 211 (237)
T ss_pred HHHHH--------------HHHHHhHHHHHHHHHH
Confidence 55444 3568888888888765
No 59
>PRK00846 hypothetical protein; Provisional
Probab=63.01 E-value=77 Score=25.94 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHHHHhc
Q 018995 194 DAAEVKLHDLKSNMAILG 211 (348)
Q Consensus 194 q~AE~Kl~ELks~Ma~LG 211 (348)
+.-|+++.+|.+-++-..
T Consensus 9 ~~le~Ri~~LE~rlAfQe 26 (77)
T PRK00846 9 QALEARLVELETRLSFQE 26 (77)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455667777776665443
No 60
>PRK00736 hypothetical protein; Provisional
Probab=62.62 E-value=68 Score=25.11 Aligned_cols=7 Identities=29% Similarity=0.932 Sum_probs=3.9
Q ss_pred CCCCCcc
Q 018995 279 MPPPPAY 285 (348)
Q Consensus 279 ~~pPpsy 285 (348)
..|||-|
T Consensus 62 ~~~PPHY 68 (68)
T PRK00736 62 VTKPPHW 68 (68)
T ss_pred CCCcCCC
Confidence 4467744
No 61
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=61.65 E-value=1.5e+02 Score=28.09 Aligned_cols=189 Identities=19% Similarity=0.263 Sum_probs=111.6
Q ss_pred HHHHHHHhcCCCCCCCCcceec---hHHHhhHHHHHHHHhh-hhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhh
Q 018995 19 QQAVFKQFGGGGYGGSDNVVTD---EAELHQHQRLERLYIS-TRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK 94 (348)
Q Consensus 19 QQAV~Kqfg~~gy~~~d~~v~D---EaElq~HQ~LekLY~S-TRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~K 94 (348)
.|.+.+.||.++- +-.|-.| |+-+..-+..++.|.. .+.++.||+.+-.= .--|-++|.-|++-+-+
T Consensus 13 kq~~~e~~g~~~~--~~~it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l-------~q~q~~lg~~f~~~~~~ 83 (229)
T PF06456_consen 13 KQMVSEKLGKKED--SRAITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQAL-------SQTQKELGDFFAELGVR 83 (229)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCcccc--cchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcc
Confidence 4589999985552 2233344 2223334444444532 45566666654332 22344555555554432
Q ss_pred ccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 018995 95 YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVS 174 (348)
Q Consensus 95 YG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~ 174 (348)
|. + -.|.++-..+|.++..|++.++.|+..|.-=+ .-|...+.-+ .+|++.--.+|..-|=|-.+-..++-
T Consensus 84 ---e~---~-~~l~~~f~~~~~~~~~~~~~~~~L~~~l~~~~-~~l~Tf~~ka-I~DT~~Tik~ye~aR~EY~ay~~~lk 154 (229)
T PF06456_consen 84 ---EK---S-PALGEEFSANGEAQRSLAKQGETLLKALKRFL-SDLNTFRNKA-IPDTLLTIKKYEDARFEYDAYRLWLK 154 (229)
T ss_dssp ----H-----CCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CC---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 14889999999999999999999999876433 3455555543 79999999999999999888777765
Q ss_pred HHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhH
Q 018995 175 KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR 227 (348)
Q Consensus 175 rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQr 227 (348)
.=... +.|-..-...|...+....++.|....-|-....--|--.++--=+
T Consensus 155 e~~~e--~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~ 205 (229)
T PF06456_consen 155 EMSDE--LDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVN 205 (229)
T ss_dssp HHH----TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcc--cCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44322 2333344467888888888888888888888877777776654333
No 62
>PRK00295 hypothetical protein; Provisional
Probab=61.43 E-value=69 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHH
Q 018995 197 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228 (348)
Q Consensus 197 E~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl 228 (348)
|.++.+|..-++-.-.---.-=..|-.||+.|
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554433222223344566555
No 63
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.52 E-value=45 Score=25.86 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.3
Q ss_pred HHhHHHHHHHHHHhc
Q 018995 197 EVKLHDLKSNMAILG 211 (348)
Q Consensus 197 E~Kl~ELks~Ma~LG 211 (348)
|.++.+|.+-++-+-
T Consensus 3 e~Ri~~LE~~la~qe 17 (69)
T PF04102_consen 3 EERIEELEIKLAFQE 17 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556665555544
No 64
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.68 E-value=1e+02 Score=26.31 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHH
Q 018995 151 DARHLAQRYDRMRQEAEAQAIEVSKRQAK-VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 229 (348)
Q Consensus 151 DARhLaqRYdRmRQEaE~Qa~eV~rRq~k-~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlT 229 (348)
+......+-..+|++.+.|+.-+..-|.| -+|---.++.+..|......+.+++..+..|=.+|-+|-..++.-+.-..
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44556667788999999999888887777 44555577888899999999999999999999999999988876555444
Q ss_pred HH
Q 018995 230 LQ 231 (348)
Q Consensus 230 lQ 231 (348)
-+
T Consensus 98 ~q 99 (132)
T PF07926_consen 98 EQ 99 (132)
T ss_pred HH
Confidence 33
No 65
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.55 E-value=1.9e+02 Score=27.57 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=86.3
Q ss_pred hhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCC---------chhhh
Q 018995 83 EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAP---------LDDAR 153 (348)
Q Consensus 83 Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaP---------LEDAR 153 (348)
+-+++|..=|++++.-. ..| +|..+-..+=.....|=.=+..|-..|-+ +.+||.......= +++.+
T Consensus 44 ~Yak~L~kLak~~~~~~--~~G-t~~~~~~~~~~e~e~~a~~H~~la~~L~~-~~~~l~~~~~~~~k~rK~~ke~~~~~~ 119 (269)
T cd07673 44 AYSRSMTKLAKSASNYS--QLG-TFAPVWDVFKTSTEKLANCHLELVRKLQE-LIKEVQKYGEEQVKSHKKTKEEVAGTL 119 (269)
T ss_pred HHHHHHHHHHhhhccCC--CcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhhHH
Confidence 44667777778886432 344 46665555544444444444444444442 4455555542210 00111
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHH----HHHHHHHHhcH---
Q 018995 154 --------------HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLH----DLKSNMAILGK--- 212 (348)
Q Consensus 154 --------------hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~----ELks~Ma~LGK--- 212 (348)
--..+|+....|+|.- +....+....-|+ +.|++ +.++++..|.+
T Consensus 120 ~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~-----------~~~~~t~k~leK~---~~k~~ka~~~Y~~~v~~l~~~~~ 185 (269)
T cd07673 120 EAVQNIQSITQALQKSKENYNAKCLEQERL-----------KKEGATQREIEKA---AVKSKKATESYKLYVEKYALAKA 185 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1135677777766531 1122244444443 33332 23344444432
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHhh
Q 018995 213 EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVL---QILDQLEGEMLSE 261 (348)
Q Consensus 213 EA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~---~ILd~L~~eMvsE 261 (348)
+=-..|..+=.+-|.+--.||.-|-+.=-.|+..+- .++|+++.+|..-
T Consensus 186 ~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~ 237 (269)
T cd07673 186 DFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINN 237 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 223467777778888888999999888788877554 4578888887643
No 66
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=55.00 E-value=15 Score=37.14 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=23.9
Q ss_pred EEecccCCCCCCceeeeeeCCEEEEEee
Q 018995 309 GEVVHPYQAESDVELTLSVGDYVVVRKV 336 (348)
Q Consensus 309 aev~hpF~aesegELsLsvGDyVVVRqV 336 (348)
|-|-+.|.|+-|.||||-.||.|.|=.-
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEK 137 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEK 137 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEe
Confidence 4577889999999999999999988543
No 67
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=54.91 E-value=1.9e+02 Score=27.41 Aligned_cols=182 Identities=14% Similarity=0.151 Sum_probs=110.6
Q ss_pred hhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHH
Q 018995 45 HQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (348)
Q Consensus 45 q~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkE 124 (348)
.+.+.||+ ++|.+|||.=+=.+.+-..-.-|+.|+.-|++ =|+.... | ...+......++.=
T Consensus 19 ~rf~~le~------~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~---~------~~~~~~v~e~~d~~ 80 (211)
T cd07612 19 MNLNMQQS------DGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD---G------HEDLGAIVEGEDLL 80 (211)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC---c------ccHHHHHHhccHHH
Confidence 44555553 56778887654333333334445556666665 3555432 2 11223333445556
Q ss_pred HhHHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHh
Q 018995 125 RGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVK 199 (348)
Q Consensus 125 re~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~K 199 (348)
.+++...+.++|.+||-..+.=-|=-..| |=..=|||.|...+... .| + . ....||..||..
T Consensus 81 ~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~-------~k----~-~-kD~~KL~kAe~e 147 (211)
T cd07612 81 WNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQ-------NA----K-K-KDDAKIAKAEEE 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------hc----c-c-ccHHHHHHHHHH
Confidence 77888899999999998876555533332 22234899988776432 12 1 1 237899999999
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHhhHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018995 200 LHDLKSNMAILGKEAAAAMAAVESQQQRLTL--QRLIAMVEAERTYHQRVLQILDQLEGEML 259 (348)
Q Consensus 200 l~ELks~Ma~LGKEA~aAM~aVEaQQQrlTl--QRLiaMVeAER~YHqrv~~ILd~L~~eMv 259 (348)
|+.-+.....|..+=--=|-..= +-|+.+ --+=|+|-.+-.||.-+..|...|.+-|.
T Consensus 148 l~~Ak~~ye~lN~~L~~ELP~L~--~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~ 207 (211)
T cd07612 148 FNRAQVVFEDINRELREELPILY--DSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777654332222211 234433 23346777899999999999999987764
No 68
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=54.65 E-value=2.1e+02 Score=27.63 Aligned_cols=158 Identities=20% Similarity=0.313 Sum_probs=105.3
Q ss_pred hhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHH
Q 018995 84 IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR 163 (348)
Q Consensus 84 i~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmR 163 (348)
-+..|+.-|--|+++-. .+ |..+-..|+..-.-++-=|.-...-|-+-|.+||+.-- .---.+| +-|+
T Consensus 47 k~D~lak~l~~yA~~E~---~~-l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~--~~cK~~r------~elK 114 (219)
T PF06730_consen 47 KGDELAKQLQDYANTEN---PN-LKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYG--TICKHAR------DELK 114 (219)
T ss_pred hhHHHHHHHHHHHhcCC---cc-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHH------HHHH
Confidence 45678888888987643 22 55577889999999999999999999999999998642 2222222 2233
Q ss_pred HHHHHHHHHHHHHhh--hhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHH-HHHHhH
Q 018995 164 QEAEAQAIEVSKRQA--KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLI-AMVEAE 240 (348)
Q Consensus 164 QEaE~Qa~eV~rRq~--k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLi-aMVeAE 240 (348)
.---++--|+.+++. |.| ..||-+-..+-.||+.|+..+-..+--.+.=---|...|. |---.+..++ ..|--|
T Consensus 115 ~~~~ar~kEikq~~~Leklr--~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEk-qKl~DlK~i~sdFv~iE 191 (219)
T PF06730_consen 115 KFNKARNKEIKQLKQLEKLR--QKNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEK-QKLKDLKKIFSDFVTIE 191 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH--ccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333344445555543 444 2255555567788998887666665555555555665552 2333567776 688999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018995 241 RTYHQRVLQILDQLEG 256 (348)
Q Consensus 241 R~YHqrv~~ILd~L~~ 256 (348)
-.||-+.+++|..-+.
T Consensus 192 M~fHaKALEv~T~a~q 207 (219)
T PF06730_consen 192 MVFHAKALEVYTAAYQ 207 (219)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999976543
No 69
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.13 E-value=2.1e+02 Score=25.98 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=81.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 018995 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (348)
Q Consensus 106 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~g 185 (348)
.|+.|-..+|.+-.....--.++...+...+++|||-++.=+ .=-|.+-.+=+..+.+-|....++.|++..
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~--~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYS--DAVKDVLKRRDQFQIEYELSVEELNKKRLE------ 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 389999999999999999999999999999999999887411 111233333345677777777778777765
Q ss_pred ChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhHHHHHHHHHHHHHHH
Q 018995 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL-QRLIAMVEAERTYHQRVLQILDQL 254 (348)
Q Consensus 186 n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTl-QRLiaMVeAER~YHqrv~~ILd~L 254 (348)
--.+++.|+.++......|. .=+.--+ ++-+.-| .=|+.+++.--.|.+.++.+-+.+
T Consensus 139 ---l~~ev~~a~~~~e~~~~~~~-------~E~~rF~-~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 139 ---LLKEVEKLQDKLECANADLK-------ADLERWK-QNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12233444555544444331 1111111 1112222 336677788888888877765554
No 70
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=48.33 E-value=2.6e+02 Score=26.86 Aligned_cols=159 Identities=21% Similarity=0.278 Sum_probs=79.3
Q ss_pred hhhhhhhhhhhhccCCCCC--CCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHH
Q 018995 83 EIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD 160 (348)
Q Consensus 83 Ei~~KLaeDc~KYG~en~~--~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYd 160 (348)
|.+.+|..=|.+|.-.... ...+.+.++-..+=+--..+=+.|+.+-.-|.++|+..|-.++. |=+.+...|+
T Consensus 37 EYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~-----~~~~~~k~~~ 111 (234)
T cd07686 37 EYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK-----DKQQVKKSYI 111 (234)
T ss_pred HHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4566677777777332111 11223434444444444444588999999999999999977753 3355555555
Q ss_pred HHHHHHHH-----HHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHH---
Q 018995 161 RMRQEAEA-----QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR--- 232 (348)
Q Consensus 161 RmRQEaE~-----Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQR--- 232 (348)
-+.+..+. .-.||.|-+.+=. +.+...++|..|+.+. -. -||+-.-|....+.+...++--+
T Consensus 112 ~~~~kl~~e~~~~~~~~l~K~K~~Y~------~~~~~~e~ar~K~~~a---~~-~gk~~~Ka~~k~~~~~~km~~~kN~Y 181 (234)
T cd07686 112 GVHQQIEAEMYKVTKTELEKLKCSYR------QLTKEVNSAKEKYKDA---VA-KGKETEKARERYDKATMKLHMLHNQY 181 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHh---hh-cccchHHHHHHHHHHHHHHHhhhhHH
Confidence 55555442 2233333322211 1223333333333321 00 12322333333333333333322
Q ss_pred HHHHHH----hHHHHHHHHHHHHHHHHH
Q 018995 233 LIAMVE----AERTYHQRVLQILDQLEG 256 (348)
Q Consensus 233 LiaMVe----AER~YHqrv~~ILd~L~~ 256 (348)
||++-. -++-||+-+=.|||-|.+
T Consensus 182 ll~i~~aN~~k~~Yy~~~lP~lLd~lQ~ 209 (234)
T cd07686 182 VLAVKGAQLHQHQYYDFTLPLLLDSLQK 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 477899988888887653
No 71
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=45.20 E-value=2e+02 Score=24.66 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=50.0
Q ss_pred hhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcC
Q 018995 83 EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (348)
Q Consensus 83 Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G 146 (348)
|-+.+|..=|++|..-+..+. .++..|-..+-..-..+-+-+..+-..|.+.|.+|++....-
T Consensus 32 eYak~L~kLak~~~~~~~~~~-~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~ 94 (191)
T cd07610 32 EYAKNLQKLAKKFSKKPESGK-TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKED 94 (191)
T ss_pred HHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777778888876543222 468888888888888899999999999999999999988764
No 72
>PRK05849 hypothetical protein; Provisional
Probab=41.87 E-value=34 Score=37.81 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=40.1
Q ss_pred ehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHH-------HHHHhHHHHHHh---hhhhhHHHHh
Q 018995 82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQM-------EKERGNLLKALG---TQVAEPLRAM 143 (348)
Q Consensus 82 ~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~m-------EkEre~l~r~L~---~QV~ePLRaM 143 (348)
++=...|-|||++||+=.- . .+|||+..==.-.+.+ ++|++++++.|. ++++.-+..+
T Consensus 434 l~~i~~lle~~~~~Gtl~F--a--~~AR~~Fva~~~l~sl~~~g~~s~~~~~~f~~s~~Tv~~~~~~D~~~l 501 (783)
T PRK05849 434 LDKIYWLLEDCKRYGTLPF--A--GIARAAFVATQLLKSLVEIGALSQEELDAFLNSLNTVSKELSKDLNSL 501 (783)
T ss_pred HHHHHHHHHHHHHhCCchh--H--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 5557889999999999743 2 4999987643333333 578888887764 4666666655
No 73
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=41.58 E-value=87 Score=26.83 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=41.9
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018995 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (348)
Q Consensus 187 ~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqrv~~ILd~L~~e 257 (348)
.+...+++..+.++.+|...+.-|......+.+..+.-++|+.-++--+...+...+-..++.|+|.|+.=
T Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a 77 (165)
T PF01025_consen 7 EEEDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERA 77 (165)
T ss_dssp TCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555566666666666665556666666666666655554444455556666666666666543
No 74
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.04 E-value=36 Score=29.96 Aligned_cols=56 Identities=34% Similarity=0.404 Sum_probs=36.2
Q ss_pred CCCchhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCChhhhhhhHHHHHhHH
Q 018995 146 GAPLDDARHL-------AQRYDRMRQEAEAQAIEVSKRQAKVRE-------TPGNPDLALKLDAAEVKLH 201 (348)
Q Consensus 146 GaPLEDARhL-------aqRYdRmRQEaE~Qa~eV~rRq~k~re-------s~gn~e~~~KLq~AE~Kl~ 201 (348)
.+|+||=..| ++||--|||=||.-+...+---.|.-. -....|.+-||++|-+||.
T Consensus 47 e~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 47 EAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5799998776 699999999999776544332222110 0113456677777777764
No 75
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=38.46 E-value=2.3 Score=30.18 Aligned_cols=18 Identities=33% Similarity=0.829 Sum_probs=12.1
Q ss_pred CCCccceeeEEecccCCC
Q 018995 300 STDAMGYFLGEVVHPYQA 317 (348)
Q Consensus 300 ~~~~~~yFlaev~hpF~a 317 (348)
.....++||.|+.|||+.
T Consensus 16 ~~~~TG~wl~E~~hpy~~ 33 (38)
T PF13587_consen 16 TGRPTGFWLSELAHPYYV 33 (38)
T ss_dssp TTEE--B-HHHHHHHHHH
T ss_pred CCCcceeccHHHhhHHHH
Confidence 345779999999999963
No 76
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=37.48 E-value=45 Score=35.74 Aligned_cols=37 Identities=46% Similarity=0.489 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcHHH-----HHHHHHHHHHhhHHHHHHHHH
Q 018995 199 KLHDLKSNMAILGKEA-----AAAMAAVESQQQRLTLQRLIA 235 (348)
Q Consensus 199 Kl~ELks~Ma~LGKEA-----~aAM~aVEaQQQrlTlQRLia 235 (348)
-+.-|=+.++-||||| +|.++||||+|.=..-..||-
T Consensus 317 sw~sLP~sL~kLGKEa~~~Rd~A~~aA~eALqEASAaE~lir 358 (579)
T PF06075_consen 317 SWDSLPSSLAKLGKEAMQQRDAAQKAAVEALQEASAAESLIR 358 (579)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999 599999999998876555543
No 77
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=36.17 E-value=25 Score=34.29 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.4
Q ss_pred EecccCCCCCCceeeeeeCCEEEE
Q 018995 310 EVVHPYQAESDVELTLSVGDYVVV 333 (348)
Q Consensus 310 ev~hpF~aesegELsLsvGDyVVV 333 (348)
.++..|.|+++.|+|+--|||||-
T Consensus 211 ra~ydysaqdedevsF~dgd~ivn 234 (264)
T KOG1702|consen 211 RAFYDYSAQDEDEVSFVDGDYIVN 234 (264)
T ss_pred hhhccCcccCcceeEEecCCeEEE
Confidence 467789999999999999999884
No 78
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=35.31 E-value=26 Score=37.43 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.6
Q ss_pred eeEEecccCCCCCCceeeeeeCCEEEE
Q 018995 307 FLGEVVHPYQAESDVELTLSVGDYVVV 333 (348)
Q Consensus 307 Flaev~hpF~aesegELsLsvGDyVVV 333 (348)
=++.|++||+++.|.||+|.-||.|..
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~l 288 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILIL 288 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEE
Confidence 358999999999999999999999875
No 79
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=35.10 E-value=1.1e+02 Score=31.58 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhhhchh--hhhhhhhccceeeeecceeehhhhhhhhhhhhccCC
Q 018995 46 QHQRLERLYISTRAGKH--FQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD 98 (348)
Q Consensus 46 ~HQ~LekLY~STRaaKh--FQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~e 98 (348)
-|-+||||-+||----. -|-+-+|. -| ..-||+...||-+-.+|||.-
T Consensus 15 I~~eLEkLN~sTDdIN~~E~~Le~ar~--~F---retqv~~t~kl~el~Kk~~k~ 64 (426)
T KOG2008|consen 15 IQGELEKLNQSTDDINRRETELEDARQ--KF---RETQVEATVKLDELVKKIGKA 64 (426)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999953221 12222222 12 123677777777777787753
No 80
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.85 E-value=3.7e+02 Score=28.76 Aligned_cols=25 Identities=4% Similarity=0.019 Sum_probs=18.9
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHhcH
Q 018995 188 DLALKLDAAEVKLHDLKSNMAILGK 212 (348)
Q Consensus 188 e~~~KLq~AE~Kl~ELks~Ma~LGK 212 (348)
.+-.||...+.|..||..-|+.|-+
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrq 90 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRR 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888743
No 81
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=30.80 E-value=29 Score=36.44 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.8
Q ss_pred EecccCCCCCCceeeeeeCCEEEEEe
Q 018995 310 EVVHPYQAESDVELTLSVGDYVVVRK 335 (348)
Q Consensus 310 ev~hpF~aesegELsLsvGDyVVVRq 335 (348)
.++..|.|..++|||+..||.|.|=.
T Consensus 219 RALYDFeAaE~nELsFkaGdIItVLd 244 (462)
T KOG2199|consen 219 RALYDFEAAEDNELSFKAGDIITVLD 244 (462)
T ss_pred hhhhcccccCCCccceecCcEEEEcc
Confidence 46788999999999999999998843
No 82
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.68 E-value=4.6e+02 Score=24.63 Aligned_cols=143 Identities=21% Similarity=0.174 Sum_probs=89.5
Q ss_pred chHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHH--------HHHHHHHHHHHHHHH
Q 018995 104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD--------RMRQEAEAQAIEVSK 175 (348)
Q Consensus 104 ~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYd--------RmRQEaE~Qa~eV~r 175 (348)
++.|.-.+-+|+..-...+.|-. ..-+.|.|||+..+- =|-=-|.|=.||+ ++.+.++.-..-+.+
T Consensus 90 ~~~l~~~s~~~~~~s~~~~~~a~----~~~~~vlE~Lk~~~d--~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~ 163 (246)
T cd07597 90 NEGLSSLSKHFQLLSDLSEDEAR----AEEDGVLEKLKLQLD--LLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLES 163 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 34588888899998888887764 455778888876541 1222356666666 455555555444444
Q ss_pred HhhhhcCCCCChhhhhhhHHHHHhHHHHHHHH---HHhcHHHHHHHHHHHHHhhH-HHHHHHHHHHHhHHHHHHHHHHHH
Q 018995 176 RQAKVRETPGNPDLALKLDAAEVKLHDLKSNM---AILGKEAAAAMAAVESQQQR-LTLQRLIAMVEAERTYHQRVLQIL 251 (348)
Q Consensus 176 Rq~k~res~gn~e~~~KLq~AE~Kl~ELks~M---a~LGKEA~aAM~aVEaQQQr-lTlQRLiaMVeAER~YHqrv~~IL 251 (348)
-+++ . ++-+..+.||.++-.+=.+-..+| ..+-++ .-=+...=.|.-+ +.-.+|...|-.|+.||..++.+-
T Consensus 164 l~~~--~-~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~-Cv~~E~~~fq~~~~~~~~~l~~~~~~q~~~~~~l~~~W 239 (246)
T cd07597 164 LRAK--P-DVKGAEVDKLEASIIKDKESIANQLNRSWFIRE-CILEETQLFQETQFLLTSILQEFVKDEIQYHSELANVW 239 (246)
T ss_pred hhcC--C-CCchhHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 1 456677888877765554444444 233332 1112222223322 777899999999999999999988
Q ss_pred HHHHH
Q 018995 252 DQLEG 256 (348)
Q Consensus 252 d~L~~ 256 (348)
..|..
T Consensus 240 ~~L~~ 244 (246)
T cd07597 240 ERLVP 244 (246)
T ss_pred HHhcc
Confidence 88764
No 83
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.23 E-value=1.4e+02 Score=29.08 Aligned_cols=39 Identities=33% Similarity=0.424 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCCcceechHHHhh
Q 018995 2 EAIRKQATKLREQVARQQ--QAVFKQFGGGGYGGSDNVVTDEAELHQ 46 (348)
Q Consensus 2 dairKQAsklREqVAkQQ--QAV~Kqfg~~gy~~~d~~v~DEaElq~ 46 (348)
|+|||||-+|--|..-+= -..|++=++||| .+|+..+..
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as~~gg~------~~~~s~~~~ 48 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGASTHGGY------DIDTSPLSG 48 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CCCcccccC
Confidence 799999999988876552 234444444555 345555543
No 84
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.72 E-value=1.1e+03 Score=27.93 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=80.2
Q ss_pred hhhhhhhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHH
Q 018995 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (348)
Q Consensus 85 ~~KLaeDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ 164 (348)
-..+.+.|-..+..-....-..+..|.-.|..+-....--...|..+...-. -. -++...+.++++..++
T Consensus 827 ~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~--~a--------~~~le~ae~~l~~~~~ 896 (1353)
T TIGR02680 827 RRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAA--EQ--------RARAARAESDAREAAE 896 (1353)
T ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHHH
Confidence 3446666766665433222223556666777777777666666654432210 00 1222334444444555
Q ss_pred HHHHHHHHHHHHhhhhcCCC---C--ChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Q 018995 165 EAEAQAIEVSKRQAKVRETP---G--NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR-LTLQRLIAMVE 238 (348)
Q Consensus 165 EaE~Qa~eV~rRq~k~res~---g--n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQr-lTlQRLiaMVe 238 (348)
+++....++.+.+.+...-. + ..+--.+|+....+|.++.+.+..+.++..+|=.+......+ -....++.+.+
T Consensus 897 e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~ 976 (1353)
T TIGR02680 897 DAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERA 976 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444444333322111 0 122334555666666666666666666655544443333222 34466677777
Q ss_pred hHHHHHHHHHHHHH
Q 018995 239 AERTYHQRVLQILD 252 (348)
Q Consensus 239 AER~YHqrv~~ILd 252 (348)
.+|.++......|-
T Consensus 977 ~~~~~~~~~~~e~~ 990 (1353)
T TIGR02680 977 EARDHAIGQLREFA 990 (1353)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888777665543
No 85
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=27.14 E-value=28 Score=27.27 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.9
Q ss_pred hhcCCCchhhhhHHHHHH
Q 018995 143 MVLGAPLDDARHLAQRYD 160 (348)
Q Consensus 143 Mv~GaPLEDARhLaqRYd 160 (348)
+|.|.|+++|+.|.++|.
T Consensus 52 ~V~~i~~~~A~~Lg~~f~ 69 (73)
T PF11697_consen 52 AVLGISLEEAIALGRKFG 69 (73)
T ss_pred EEcCCCHHHHHHHHHHhC
Confidence 577999999999999985
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=1.1e+03 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.7
Q ss_pred eeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK 335 (348)
Q Consensus 306 yFlaev~hpF~aesegELsLsvGDyVVVRq 335 (348)
++--.++.||+|-++.|+|+..||.|.|-+
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~e 722 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFE 722 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEeh
Confidence 455678999999999999999999999974
No 87
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=26.30 E-value=36 Score=28.47 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=8.7
Q ss_pred eeeeCCEEEE
Q 018995 324 TLSVGDYVVV 333 (348)
Q Consensus 324 sLsvGDyVVV 333 (348)
..+|||||+|
T Consensus 41 ~~~vGDyVLV 50 (90)
T PRK10409 41 QPRVGQWVLV 50 (90)
T ss_pred ccCCCCEEEE
Confidence 5689999998
No 88
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=25.04 E-value=88 Score=28.50 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=61.5
Q ss_pred echHHHhhHHHHHHHHhhhhhchhhhhhhhhccceeeeecceeehhhhhhhhhhhhccCCCCCCCchHHHHHHHHhH-HH
Q 018995 39 TDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYG-RA 117 (348)
Q Consensus 39 ~DEaElq~HQ~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~LarAa~~yg-~a 117 (348)
++|+|...-+.-=+.+--|+ -.|=|.-++.+=|+|.+.-...|-..+|..+|++-|+ |=|-|+|.+-.+| .-
T Consensus 31 LTe~Ey~~L~~rA~~aGlS~--SEfIRqAi~~~~g~V~v~r~T~e~~~~lir~l~gian-----NLNQLAr~aN~~~~~~ 103 (147)
T PRK13858 31 LRSAEYESFSAQARLLGLSD--SMAIRVAVRRIGGFLEIDAETREKMEAILQSIGTLSS-----NIAALLSAYAENPRPD 103 (147)
T ss_pred cCHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEeecccCHHHHHHHHHHHHHHHH-----HHHHHHHHHhcCCCCc
Confidence 67887654444333333333 3688888876669996555556666677777777664 3467999999999 78
Q ss_pred HHHHHHHHhHHHHHHhh
Q 018995 118 RAQMEKERGNLLKALGT 134 (348)
Q Consensus 118 ~~~mEkEre~l~r~L~~ 134 (348)
...|+.||--|=+.|.+
T Consensus 104 ~~~l~~er~~~g~~~~~ 120 (147)
T PRK13858 104 LEALRAERIAFGKEFAD 120 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999877666654
No 89
>COG5346 Predicted membrane protein [Function unknown]
Probab=24.90 E-value=55 Score=29.56 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHH
Q 018995 229 TLQRLIAMVEAERT 242 (348)
Q Consensus 229 TlQRLiaMVeAER~ 242 (348)
|+|||++|-|-|.+
T Consensus 54 t~~rimaMAekEQa 67 (136)
T COG5346 54 TLQRIMAMAEKEQA 67 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999987
No 90
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.73 E-value=41 Score=27.61 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.7
Q ss_pred eeeeeCCEEEEEeec
Q 018995 323 LTLSVGDYVVVRKVH 337 (348)
Q Consensus 323 LsLsvGDyVVVRqVs 337 (348)
|++..||||+|+.-.
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 788999999998644
No 91
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=24.39 E-value=71 Score=33.54 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=66.6
Q ss_pred hHHHHhhcCCC-----chhhhhHHHH-HHHHHHHHHHHHH-----------HHHHHhhhhcCCCCChhhhhhhHHHHHhH
Q 018995 138 EPLRAMVLGAP-----LDDARHLAQR-YDRMRQEAEAQAI-----------EVSKRQAKVRETPGNPDLALKLDAAEVKL 200 (348)
Q Consensus 138 ePLRaMv~GaP-----LEDARhLaqR-YdRmRQEaE~Qa~-----------eV~rRq~k~res~gn~e~~~KLq~AE~Kl 200 (348)
+-+-.-|||-| +||--.=||+ +-++-.|+|+--. -..|-+.---+++.+||.+.|||---.|+
T Consensus 110 ~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~ 189 (472)
T KOG2856|consen 110 EAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKC 189 (472)
T ss_pred hhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHH
Confidence 34455677865 4454444443 3444445544211 12233333356788999999998765555
Q ss_pred HH--------HHHHHHHhcHHH---HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 018995 201 HD--------LKSNMAILGKEA---AAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (348)
Q Consensus 201 ~E--------Lks~Ma~LGKEA---~aAM~aVEaQQQrlTlQRLiaMVeAER~YHqr 246 (348)
.+ -..+++-|+|-- --+|+.|=.|=|..--+||.=..|-=-..|++
T Consensus 190 k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~h 246 (472)
T KOG2856|consen 190 KQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQRH 246 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 234667776632 45788888898888888887777766666666
No 92
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.34 E-value=1.8e+02 Score=26.38 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=32.7
Q ss_pred hhhhhccCCCCCCCchHHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhhhHHHHhhc
Q 018995 90 EDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (348)
Q Consensus 90 eDc~KYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 145 (348)
.-|...+...++ ..|+-+-..+|.+-...=.-=++|..-+...+.|||+.|+.
T Consensus 47 ~~fn~ls~~E~~---~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~ 99 (187)
T cd07629 47 GRFNAFSLEEQK---SELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ 99 (187)
T ss_pred HHHHHHhhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334455555432 23555555555544444444556888889999999999874
No 93
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]
Probab=23.87 E-value=38 Score=33.06 Aligned_cols=13 Identities=69% Similarity=0.989 Sum_probs=11.3
Q ss_pred eeeeCCEEEEEee
Q 018995 324 TLSVGDYVVVRKV 336 (348)
Q Consensus 324 sLsvGDyVVVRqV 336 (348)
+|.||||||+..|
T Consensus 56 ~LevGDYvvs~~v 68 (254)
T COG1948 56 TLEVGDYVVSDDV 68 (254)
T ss_pred ecccccEEeecCe
Confidence 6899999999855
No 94
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.69 E-value=1.5e+02 Score=21.86 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018995 154 HLAQRYDRMRQEAEAQAIEVSKRQAKV 180 (348)
Q Consensus 154 hLaqRYdRmRQEaE~Qa~eV~rRq~k~ 180 (348)
.|+..|++|.+|.+...++|.+-..+.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477788899999999888888766554
No 95
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=22.00 E-value=59 Score=31.45 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCCC---------CCCccceeeEEecccCCCCCCceeeeeeCCEEEEEe
Q 018995 281 PPPAYEEVNGIYASQTHNG---------STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRK 335 (348)
Q Consensus 281 pPpsyee~Ng~~~s~~~~~---------~~~~~~yFlaev~hpF~aesegELsLsvGDyVVVRq 335 (348)
|||+|..+|+..-.+..-- ......-++.....+|+++..+||..--||.+.|=-
T Consensus 129 plv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~ 192 (222)
T KOG3601|consen 129 PLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLD 192 (222)
T ss_pred CCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeec
Confidence 7899998888754421100 000122345678889999999999999999987743
No 96
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.85 E-value=1.2e+03 Score=26.40 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHHHHHHHHHHHH
Q 018995 153 RHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ 224 (348)
Q Consensus 153 RhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQ 224 (348)
-.|-..++.|..+-+....+..+-+..... .-.+|+-+|.+|.+|++-+..+-+--..+=..++++
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~------~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLES------LKNQLKESEQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888887777777666553 367899999999999999987665555544444444
No 97
>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=63 Score=30.32 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCccceeeEEecccCCCCCCceeeeeeCCEEEEEeeccc
Q 018995 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVHNL 339 (348)
Q Consensus 300 ~~~~~~yFlaev~hpF~aesegELsLsvGDyVVVRqVs~~ 339 (348)
-.+...+++||.++-|..-. ++||.||-++=...
T Consensus 47 l~~~gd~l~aEkls~~f~~~------~~gDIVi~~sP~~~ 80 (176)
T KOG0171|consen 47 LHDGGDVLLAEKLSYRFRKP------QVGDIVIAKSPPDP 80 (176)
T ss_pred ecCCCcEEehhhhhHhhcCC------CCCCEEEEeCCCCc
Confidence 34455788999999888765 89999998765433
No 98
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=21.67 E-value=2.1e+02 Score=21.96 Aligned_cols=45 Identities=36% Similarity=0.498 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHh-cHH
Q 018995 162 MRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAIL-GKE 213 (348)
Q Consensus 162 mRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~L-GKE 213 (348)
|+.++..|...| |+.|... ++ -..+.+|=.+|-+||..+..+ |++
T Consensus 1 L~~~I~~QG~~V--R~LKa~k----a~-k~~i~~aV~~Ll~LK~~~~~~tg~~ 46 (56)
T PF00458_consen 1 LEAQIAAQGDKV--RKLKAEK----AD-KEEIDAAVAKLLELKAELKELTGKD 46 (56)
T ss_dssp HHHHHHHHHHHH--HHHHHTT-------HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred ChHHHHHHHHHH--HHHHccC----Cc-HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 456778888888 4556432 22 226889999999999999887 655
No 99
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=21.54 E-value=2.2e+02 Score=22.27 Aligned_cols=43 Identities=33% Similarity=0.446 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhcCCCchhhhhHHHHHHHH---------HHHHHHHHHHHHHHh
Q 018995 134 TQVAEPLRAMVLGAPLDDARHLAQRYDRM---------RQEAEAQAIEVSKRQ 177 (348)
Q Consensus 134 ~QV~ePLRaMv~GaPLEDARhLaqRYdRm---------RQEaE~Qa~eV~rRq 177 (348)
+||..=|+..+ |-+.++|++++.+=++- +.+||..+..+.+.-
T Consensus 20 ~~Vi~~L~~~~-~~s~~~A~~~a~~v~~~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 20 EQVIDVLRRVF-GCSEEQARQIAMEVHREGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HHHHHHHHHHC----HHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHhHcCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 57889999999 99999999999987764 678888877777665
No 100
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.11 E-value=1.3e+02 Score=23.60 Aligned_cols=48 Identities=31% Similarity=0.373 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH-HhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHhcHHH
Q 018995 165 EAEAQAIEVSK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA 214 (348)
Q Consensus 165 EaE~Qa~eV~r-Rq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~LGKEA 214 (348)
++|.+|-.... .=.|+|.+ |-.--.||+.||.+..+|...|..|-++-
T Consensus 7 ~~EirakQ~~~eEL~kvk~~--n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSA--NLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543322 22345544 66667899999999999999999987764
No 101
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.93 E-value=4.1e+02 Score=21.21 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHHHHHHHHh
Q 018995 154 HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAIL 210 (348)
Q Consensus 154 hLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~ELks~Ma~L 210 (348)
+|-++|.+||.|=-.-..++.--+.- +.--..|.+.|-+|+.-+.+-+-.|
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~E------R~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREE------RAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57789999998865544444322211 3334568888988888877766554
No 102
>PF13982 YbfN: YbfN-like lipoprotein
Probab=20.32 E-value=1.4e+02 Score=25.35 Aligned_cols=37 Identities=32% Similarity=0.559 Sum_probs=24.9
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhhhhHHHHHhHHHH
Q 018995 146 GAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDL 203 (348)
Q Consensus 146 GaPLEDARhLaqRYdRmRQEaE~Qa~eV~rRq~k~res~gn~e~~~KLq~AE~Kl~EL 203 (348)
-||-||.+ |.+-|+.--+ .+.|||| ||.+-++=|.-|
T Consensus 3 ~ap~eds~-lk~aYsaCIn-----------------taeG~pe---Kv~~CqsvLnvl 39 (89)
T PF13982_consen 3 PAPKEDSK-LKQAYSACIN-----------------TAEGSPE---KVEACQSVLNVL 39 (89)
T ss_pred CCchHHHH-HHHHHHHHHh-----------------hccCChH---HHHHHHHHHHHH
Confidence 48999999 9999975432 4578998 555554444333
No 103
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=20.31 E-value=53 Score=26.52 Aligned_cols=9 Identities=67% Similarity=1.221 Sum_probs=7.9
Q ss_pred eeeCCEEEE
Q 018995 325 LSVGDYVVV 333 (348)
Q Consensus 325 LsvGDyVVV 333 (348)
..|||||+|
T Consensus 36 ~~vGD~VLV 44 (76)
T TIGR00074 36 VKVGDYVLV 44 (76)
T ss_pred CCCCCEEEE
Confidence 579999998
Done!