BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018997
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
           With 3 Monomers In The Asymmetric Unit
 pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
           With 3 Monomers In The Asymmetric Unit
 pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
           With 3 Monomers In The Asymmetric Unit
          Length = 321

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEA 281
           NIT VSYDF EE F+H    A  F   +     T    T +EA
Sbjct: 229 NITSVSYDFDEEFFSHTSELAKDFI-RKLLVKETRKRLTIQEA 270


>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
           Autoinhibited Conformation Of A Human Death-associated
           Protein Kinase
 pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
           Autoinhibited Conformation Of A Human Death-associated
           Protein Kinase
 pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
           Autoinhibited Conformation Of A Human Death-associated
           Protein Kinase
 pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
           Autoinhibited Conformation Of A Human Death-associated
           Protein Kinase
 pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
           Inhibitor
 pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
           Inhibitor
 pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
           Inhibitor
 pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
           Inhibitor
          Length = 321

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEA 281
           NIT VSYDF EE F+H    A  F   +     T    T +EA
Sbjct: 229 NITSVSYDFDEEFFSHTSELAKDFI-RKLLVKETRKRLTIQEA 270


>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
 pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
           Kinase
          Length = 288

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEA 281
           NIT VSYDF EE F+H    A  F   +     T    T +EA
Sbjct: 229 NITSVSYDFDEEFFSHTSELAKDFI-RKLLVKETRKRLTIQEA 270


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,143,465
Number of Sequences: 62578
Number of extensions: 464313
Number of successful extensions: 1009
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 5
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)