BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018997
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87055|YDJ7_SCHPO Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC57A10.07 PE=4 SV=1
Length = 311
Score = 204 bits (519), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 154/248 (62%), Gaps = 15/248 (6%)
Query: 105 PFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKD 164
P L +L++VAGH+++ S D + W LEPYQ+ G+ F H++ G++++++D
Sbjct: 72 PLKNLTHLIIVAGHAVWLGGSTNGED-DSEWILEPYQK--GEGKVFAQHVRSGLDLLSQD 128
Query: 165 DKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLF 224
D +LL+FSGG+TR AGP SEAQSY++++ ++E + R TEE ARDS EN+LF
Sbjct: 129 DSSLLVFSGGQTRNGAGPSSEAQSYYSLSMQ---INSDEGLAARRTTEEFARDSLENVLF 185
Query: 225 SVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTP---GSTTSKEA 281
SV RF E+T YP ITVVS+DFK +RF +LHR AI FPE +F + G G + +
Sbjct: 186 SVARFYEVTSRYPQKITVVSFDFKRDRFLNLHRKAIKFPEHKFHFVGIDPEGGVSDATRE 245
Query: 282 AMRGEALVRSQFQEDPYGCLGSLW-RKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAP-- 338
A R A++ F EDPY C L +K++ R+PF R Y CPE+ L +YC + P
Sbjct: 246 AERKNAII--PFTEDPYACSNPLLVKKRMERNPFRRQHSYLITCPELIPLLQYCPSDPSK 303
Query: 339 -YSGSLPW 345
++G LPW
Sbjct: 304 FFNGKLPW 311
>sp|Q08634|YO238_YEAST Uncharacterized protein YOR238W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YOR238W PE=1 SV=2
Length = 303
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 126/277 (45%), Gaps = 60/277 (21%)
Query: 112 LVMVAGHSIYTSSS--------CGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAK 163
L++V HSI+ SSS G++ + W L P+Q +F+ H ++++ +
Sbjct: 7 LILVPCHSIWKSSSHPSDNSVNLGQL--PEYWHLAPFQYEGNDHLAFIKHGLTAIKLLLQ 64
Query: 164 D-DKALLLFSGGETRKDAGPRSEAQSYWTVAE------------SKGWFGNEESVRWRAM 210
D A ++FSG +T+K+AG SEAQSY+ + E F NE + + +
Sbjct: 65 RFDTATVIFSGSQTKKEAGAISEAQSYYFLFEKLIRYVMSNDNIDVPNFDNELRLLLKEV 124
Query: 211 ---------------------TEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKE 249
TEE + DSF+NL++S+ RF E+ +P IT++ + FK
Sbjct: 125 KNLLSSQNVNVDELFYGGSITTEEFSLDSFDNLIYSIYRFEEVNKKFPQKITIIGFAFKM 184
Query: 250 ERFTHLHRSAIGFPESRFFYSGT---PGSTTSKEAAMRGEALVR-------SQFQEDPYG 299
RF H AI +P+S Y G P + + + + LV+ S F D Y
Sbjct: 185 PRFISCHAKAIDYPQSNITYIGIDPKPANYNQTQLSKYYDDLVQMEDKNALSLFSSDWYA 244
Query: 300 CLGSLWRKKLGRDPFHRTIPYPNG--CPE----IEGL 330
L KK R+PF+RT PY C E IEG+
Sbjct: 245 TKDRLLTKKRSRNPFNRTAPYAQNIFCKENGKRIEGI 281
>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus musculus GN=Ssh1
PE=1 SV=1
Length = 1042
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 130 DKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSE 185
D E LE + P + V H QEG + KD K L F + R D+ P+ E
Sbjct: 535 DLEKDALLEEEESQPVEVHKLVQHPQEGARLCEKDVKRKLEFGNSKPRSDSLPQVE 590
>sp|O05242|O16G3_BACSU Probable oligo-1,6-glucosidase 3 OS=Bacillus subtilis (strain 168)
GN=yugT PE=3 SV=2
Length = 554
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 179 DAGPRSEAQSYWTVAESKGWFGNEESVRW-RAMTEEHARDSFENLLFSVCRFRE-----L 232
+AGP Y +E+K W G E+ +W A +++ + S + S+ + R+ +
Sbjct: 421 NAGP------YAGFSEAKPWIGINENYKWLNAEAQKNDKTSVYHFYKSLIKLRQTYDVFI 474
Query: 233 TGTY----PHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEAL 288
GTY P + + +Y K E T L + + + F +SG P S+ +AL
Sbjct: 475 NGTYELILPEDQQIFAYLRKNESHTALIAANLTGTPALFRHSGLPLSS---------DAL 525
Query: 289 VRSQFQEDPYGCLGSL 304
V S + +P+ + S+
Sbjct: 526 VLSNIETEPHKHMTSV 541
>sp|Q9USN0|GPI10_SCHPO GPI mannosyltransferase 3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gpi10 PE=3 SV=1
Length = 506
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 38 KKLPLHPLKMIKSFANRFNYYK--------KLHPILVFCIALSFAVSVLVILLAYESHYW 89
K P P+K + SF+N FN ++ +L I V C++L F V+++ + Y +
Sbjct: 201 NKNPQTPIKDLLSFSNVFNRFRFLYALGYGRLFGIFVLCVSL-FLVNIIADRILYGRFVF 259
Query: 90 QTIGYRKFNVGS 101
I + +FNV S
Sbjct: 260 PIISFFQFNVTS 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,153,805
Number of Sequences: 539616
Number of extensions: 5679227
Number of successful extensions: 11947
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11935
Number of HSP's gapped (non-prelim): 13
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)