Query 018997
Match_columns 347
No_of_seqs 186 out of 276
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4533 Uncharacterized conser 100.0 8.6E-80 1.9E-84 576.4 4.6 309 1-346 1-317 (317)
2 cd06259 YdcF-like YdcF-like. Y 99.9 1.1E-21 2.3E-26 166.9 14.4 129 111-275 1-129 (150)
3 PRK10834 vancomycin high tempe 99.9 5.9E-21 1.3E-25 179.7 16.3 121 109-264 44-164 (239)
4 PRK10494 hypothetical protein; 99.8 1.1E-19 2.4E-24 171.7 16.7 127 108-263 77-203 (259)
5 PF02698 DUF218: DUF218 domain 99.8 3.4E-19 7.3E-24 152.3 9.4 122 110-263 2-123 (155)
6 COG1434 Uncharacterized conser 99.3 7.3E-11 1.6E-15 106.1 16.4 99 148-264 78-176 (223)
7 COG2949 SanA Uncharacterized m 99.0 2.8E-08 6.1E-13 93.1 17.8 156 108-303 55-215 (235)
8 KOG4533 Uncharacterized conser 98.2 7.2E-07 1.6E-11 85.6 1.9 92 104-195 2-109 (317)
9 KOG0850 Transcription factor D 58.5 12 0.00025 36.5 3.7 72 10-86 82-172 (245)
10 PF01071 GARS_A: Phosphoribosy 45.6 17 0.00038 33.9 2.6 58 154-214 26-88 (194)
11 PRK03670 competence damage-ind 40.8 42 0.00092 32.4 4.5 37 152-188 47-83 (252)
12 COG1058 CinA Predicted nucleot 39.7 39 0.00084 33.0 4.1 40 151-193 47-86 (255)
13 KOG4661 Hsp27-ERE-TATA-binding 39.4 26 0.00055 38.4 3.0 37 144-180 50-86 (940)
14 TIGR02802 Pal_lipo peptidoglyc 37.8 92 0.002 25.0 5.4 62 147-214 12-79 (104)
15 PF14736 N_Asn_amidohyd: Prote 36.8 21 0.00046 35.2 1.8 33 145-177 229-261 (274)
16 PF15176 LRR19-TM: Leucine-ric 33.2 49 0.0011 28.4 3.2 24 60-83 15-38 (102)
17 cd07185 OmpA_C-like Peptidogly 30.5 1.5E+02 0.0033 23.1 5.5 52 147-198 14-71 (106)
18 cd00885 cinA Competence-damage 30.5 78 0.0017 28.5 4.3 35 153-188 47-81 (170)
19 COG1070 XylB Sugar (pentulose 30.2 70 0.0015 33.2 4.5 142 104-264 276-429 (502)
20 smart00852 MoCF_biosynth Proba 30.0 1E+02 0.0022 26.0 4.7 36 152-188 45-80 (135)
21 PF01650 Peptidase_C13: Peptid 29.7 46 0.00099 32.1 2.8 30 169-198 4-33 (256)
22 COG2885 OmpA Outer membrane pr 29.6 1.4E+02 0.0031 26.7 5.8 52 147-198 95-152 (190)
23 PF02782 FGGY_C: FGGY family o 29.5 76 0.0016 27.7 4.0 54 210-263 119-176 (198)
24 KOG1165 Casein kinase (serine/ 28.8 26 0.00056 36.4 1.0 16 322-337 105-120 (449)
25 PF03911 Sec61_beta: Sec61beta 28.4 52 0.0011 23.5 2.2 22 59-80 16-37 (41)
26 PF12694 MoCo_carrier: Putativ 28.3 31 0.00067 31.3 1.3 22 170-198 1-22 (145)
27 TIGR00177 molyb_syn molybdenum 27.8 99 0.0021 26.7 4.3 41 144-189 50-90 (144)
28 PF11770 GAPT: GRB2-binding ad 27.3 35 0.00077 31.3 1.5 15 69-83 10-24 (158)
29 PF07584 BatA: Aerotolerance r 27.3 1E+02 0.0022 24.1 3.9 23 35-57 28-50 (77)
30 TIGR01312 XylB D-xylulose kina 26.4 73 0.0016 32.1 3.7 55 210-264 360-418 (481)
31 PRK10510 putative outer membra 26.2 1.7E+02 0.0037 27.6 5.9 61 146-214 123-191 (219)
32 PF09419 PGP_phosphatase: Mito 26.1 1.7E+02 0.0037 26.8 5.7 67 192-263 35-108 (168)
33 cd00458 SugarP_isomerase Sugar 25.8 86 0.0019 27.9 3.7 30 150-179 4-34 (169)
34 PF08366 LLGL: LLGL2; InterPr 24.7 65 0.0014 27.6 2.5 18 164-181 26-43 (105)
35 TIGR00088 trmD tRNA (guanine-N 24.6 44 0.00095 32.5 1.7 17 106-124 99-115 (233)
36 COG0336 TrmD tRNA-(guanine-N1) 24.2 45 0.00098 32.5 1.7 14 105-118 99-112 (240)
37 cd00758 MoCF_BD MoCF_BD: molyb 23.6 1.4E+02 0.0031 25.3 4.5 38 144-186 42-79 (133)
38 PLN02977 glutathione synthetas 23.4 68 0.0015 34.1 2.9 32 131-163 360-391 (478)
39 TIGR02855 spore_yabG sporulati 23.3 1.7E+02 0.0038 29.2 5.5 93 109-225 153-254 (283)
40 cd06298 PBP1_CcpA_like Ligand- 23.3 5.2E+02 0.011 22.8 10.4 107 156-274 106-214 (268)
41 PF06925 MGDG_synth: Monogalac 23.3 1.5E+02 0.0032 25.9 4.6 16 258-273 153-168 (169)
42 cd01400 6PGL 6PGL: 6-Phosphogl 23.2 87 0.0019 29.0 3.3 31 149-179 6-37 (219)
43 PF10686 DUF2493: Protein of u 22.6 1.4E+02 0.0031 23.5 3.9 40 153-198 19-58 (71)
44 PRK06242 flavodoxin; Provision 22.3 2.4E+02 0.0052 23.7 5.6 58 113-198 46-103 (150)
45 TIGR02667 moaB_proteo molybden 21.5 1.7E+02 0.0038 26.0 4.8 41 144-187 45-85 (163)
46 PRK01215 competence damage-ind 21.3 1.1E+02 0.0023 29.8 3.6 34 152-186 50-83 (264)
47 PRK00026 trmD tRNA (guanine-N( 21.0 56 0.0012 31.9 1.6 17 106-124 102-118 (244)
48 COG1207 GlmU N-acetylglucosami 21.0 1.2E+02 0.0025 32.3 3.9 76 108-196 44-121 (460)
49 TIGR03789 pdsO proteobacterial 20.8 2.2E+02 0.0048 27.5 5.6 61 146-214 146-214 (239)
50 PF10215 Ost4: Oligosaccaryltr 20.4 1.2E+02 0.0027 21.3 2.8 20 67-86 8-27 (35)
51 COG1509 KamA Lysine 2,3-aminom 20.3 93 0.002 32.2 3.1 29 149-177 141-170 (369)
No 1
>KOG4533 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.6e-80 Score=576.45 Aligned_cols=309 Identities=44% Similarity=0.716 Sum_probs=275.1
Q ss_pred CCCCCCCCCCCCCCccccCCCCccccccccccccccCCCCCCChhhhhHHHHhhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 018997 1 MKSFSFGSNSNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVI 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (347)
|.|+ ..++-+.|.| .|+. .+++|.|.++||+. +.+ .+||++++++.|.+|
T Consensus 1 M~s~----~~~v~l~f~a-srs~---s~~~iwks~spksk---------~~g------v~L~~~l~~~~c~~F------- 50 (317)
T KOG4533|consen 1 MYSM----DEKVELIFVA-SRSG---SCHSIWKSSSPKSK---------DNG------VNLGQLLEYWHCAPF------- 50 (317)
T ss_pred CCCc----cccceEEEee-cccC---CccceeeccCCCcc---------ccc------eeeccceeeeeeeeE-------
Confidence 5555 3667788887 6655 45799999999983 222 689999999988888
Q ss_pred HHHhhhc-cccccceeeeeccCCCCCCCCCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHH
Q 018997 81 LLAYESH-YWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVE 159 (347)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~ 159 (347)
.+|+++ ..+..+|..++.....+|+.+++|||||.||+||++.. ..|+++++|+|++||+. |+..+|..|++.||+
T Consensus 51 -viy~~~~h~~~~~~~~t~l~~~~qpf~nlt~lvivaGh~v~~~~s-~~gE~~s~wfLe~yqk~-gq~~tf~~h~~~gid 127 (317)
T KOG4533|consen 51 -VIYEGNDHLAFIKHGLTALKLLLQPFDNLTNLVIVAGHQVKKEAS-AIGEAQSYWFLEEYQKR-GQAATFYVHSNDGID 127 (317)
T ss_pred -EEEcCCCcceeEEeCchhhhhcccccccceeeEEEecceeeeccc-ccccccchhhhhhhhhc-cccceeeeecccccc
Confidence 378876 47778888888888899999999999999999999864 45789999999999996 999999999999999
Q ss_pred HHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCc
Q 018997 160 IVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHN 239 (347)
Q Consensus 160 ~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~k 239 (347)
.+.+|..++|+||||||+..+||.|||||||.+++. |+.++ +++|.+|||+|+|||||||||+|||+|+|++||+|
T Consensus 128 ~~~~DdeslLlfsgg~tr~~agp~seaqsyy~~s~~---~~kne-v~sr~~TEEfarDSfeNllfSv~RF~Evt~~yPQk 203 (317)
T KOG4533|consen 128 VPNFDDESLLLFSGGKTRLSAGPVSEAQSYYGGSIT---FGKNE-VRSRALTEEFARDSFENLLFSVYRFEEVTKKYPQK 203 (317)
T ss_pred ccCCCcceeeeeeCcccccCCCCcchhhhheeeeee---ecchh-hhhhhhhHHHhHhhHHhhhhhhhhHHhHhccCCcc
Confidence 999999999999999999999999999999999998 55666 89999999999999999999999999999999999
Q ss_pred EEEEcCcchhhHHHHHHHHHhCCCCCCcEEeccCCCCCh----HHHHHHHHHHHHhhcccCcCCCChhhhhhhhcCCCCC
Q 018997 240 ITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTS----KEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFH 315 (347)
Q Consensus 240 ItVVt~~FK~~Rf~~lH~~Algfp~~~~~yiGip~~~~~----~~~~~~gE~~a~~~f~~DpYG~~~~L~~KR~~RNPf~ 315 (347)
||||+++||++||+.+|++||+||++||+||||+|.+.. ++.+.++|.....+|+.|||||.+.|++||+.||||+
T Consensus 204 ITvvsfdFK~~RF~~lHrkAi~fPes~f~yiGidP~~~~s~~t~e~~~k~~av~~~~FseDpYac~~~L~~Kk~~RnPF~ 283 (317)
T KOG4533|consen 204 ITVVSFDFKMPRFISLHRKAIDFPESNFTYIGIDPKPANSNQTQESKYKDDAVQMEDFSEDPYACKDRLLTKKRSRNPFN 283 (317)
T ss_pred eEEEEeeccchHHHHhHHhhcCCcccceEEEeeCCCccccchhhhhhhcccccchhhcccCchhhhhHHHHhhhccCccc
Confidence 999999999999999999999999999999999775532 2334455555567799999999999999999999999
Q ss_pred CCCCCCCCchhHHHhhhhcCCCC---CCCCCCCC
Q 018997 316 RTIPYPNGCPEIEGLFRYCGTAP---YSGSLPWA 346 (347)
Q Consensus 316 R~~~Y~~s~pel~~Ll~~cg~~~---~~g~LPWs 346 (347)
|++||...|||+-+|++||+.+. |+|+|||+
T Consensus 284 Rt~pY~I~CpE~g~l~~yc~sdp~~~f~gklPW~ 317 (317)
T KOG4533|consen 284 RTAPYAIFCPENGKLIEYCESDPEYKFKGKLPWS 317 (317)
T ss_pred ccCCceeecccccchheeCCCChhhccCCCCCCC
Confidence 99999999999999999999886 99999996
No 2
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=99.88 E-value=1.1e-21 Score=166.90 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=111.2
Q ss_pred cEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 018997 111 NLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYW 190 (347)
Q Consensus 111 ~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~ 190 (347)
+.|||+|++++.++. .+.+.+|+++|++++++.+...||+|||.+.++ ..|||+.|+
T Consensus 1 d~IvVLG~~~~~~~~---------------------~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~--~~~ea~~m~ 57 (150)
T cd06259 1 DAIVVLGGGVNGDGP---------------------SPILAERLDAAAELYRAGPAPKLIVSGGQGPGE--GYSEAEAMA 57 (150)
T ss_pred CEEEEeCCccCCCCC---------------------ChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCCHHHHHH
Confidence 589999999986642 178999999999999999999999999999984 689999999
Q ss_pred HHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCCCCcEEe
Q 018997 191 TVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYS 270 (347)
Q Consensus 191 ~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~~~~~yi 270 (347)
++|+++|+ +.++|++|++|+||+||++|+..++.+... .+|+|||+.||+.|+..+ ++..+.. +..+
T Consensus 58 ~~l~~~gv------~~~~I~~e~~s~~T~ena~~~~~~~~~~~~---~~i~lVTs~~H~~Ra~~~-~~~~~~~---~~~~ 124 (150)
T cd06259 58 RYLIELGV------PAEAILLEDRSTNTYENARFSAELLRERGI---RSVLLVTSAYHMPRALLI-FRKAGLD---VEVV 124 (150)
T ss_pred HHHHHcCC------CHHHeeecCCCCCHHHHHHHHHHHHHhcCC---CeEEEECCHHHHHHHHHH-HHHcCCC---CcEE
Confidence 99999998 889999999999999999999999988532 799999999999999776 5555543 4455
Q ss_pred ccCCC
Q 018997 271 GTPGS 275 (347)
Q Consensus 271 Gip~~ 275 (347)
+.|..
T Consensus 125 ~~p~~ 129 (150)
T cd06259 125 PAPTD 129 (150)
T ss_pred ecCcc
Confidence 55543
No 3
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=99.86 E-value=5.9e-21 Score=179.69 Aligned_cols=121 Identities=13% Similarity=0.180 Sum_probs=106.0
Q ss_pred CCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 109 LKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 109 ~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~S 188 (347)
..+.|||+|.|+|.... ...+.|..||++|++++++.+...||+|||.+. + ..+||++
T Consensus 44 ~~d~ivVLGa~~~~~~g-------------------~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~-~--~~~Ea~~ 101 (239)
T PRK10834 44 YRQVGVVLGTAKYYRTG-------------------VINQYYRYRIQGAINAYNSGKVNYLLLSGDNAL-Q--SYNEPMT 101 (239)
T ss_pred CCCEEEEcCCcccCCCC-------------------CcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCC-C--CCCHHHH
Confidence 35899999999985321 235789999999999999999999999999864 3 4799999
Q ss_pred HHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCC
Q 018997 189 YWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPE 264 (347)
Q Consensus 189 y~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~ 264 (347)
|++||+++|+ ++++|++|+.++||+||+.|++.+|.. .+++|||.+||..|++-+ ++..|+..
T Consensus 102 M~~yLi~~GV------p~e~Ii~e~~s~nT~en~~~a~~i~~~------~~~iIVTq~fHm~RA~~i-a~~~Gi~~ 164 (239)
T PRK10834 102 MRKDLIAAGV------DPSDIVLDYAGFRTLDSIVRTRKVFDT------NDFIIITQRFHCERALFI-ALHMGIQA 164 (239)
T ss_pred HHHHHHHcCC------CHHHEEecCCCCCHHHHHHHHHHHhCC------CCEEEECCHHHHHHHHHH-HHHcCCce
Confidence 9999999999 999999999999999999999999853 479999999999999877 88888853
No 4
>PRK10494 hypothetical protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=171.73 Aligned_cols=127 Identities=18% Similarity=0.171 Sum_probs=102.9
Q ss_pred CCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 108 KLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 108 ~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
...+.|||+|.|+....+..+. + |. .+ .+ .+|+++|++++++++...+|+|||++.++ ++|||+
T Consensus 77 ~~~d~IVVLGgG~~~~~~~~~~-----~-----~l-~~--~~-~~Rl~~a~~L~r~~~~~~ii~SGg~~~~~--~~sEA~ 140 (259)
T PRK10494 77 QKVDYIVVLGGGYTWNPQWAPS-----S-----NL-IN--NS-LPRLTEGIRLWRANPGAKLIFTGGAAKTN--TVSTAE 140 (259)
T ss_pred CCCCEEEEcCCCcCCCCCCCCc-----H-----hH-hh--hH-HHHHHHHHHHHHhCCCCEEEEECCCCCCC--CCCHHH
Confidence 4578999999998644210000 0 00 01 12 48999999999999999999999999877 689999
Q ss_pred HHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCC
Q 018997 188 SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFP 263 (347)
Q Consensus 188 Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp 263 (347)
.|.++|++.|+ ++++|++|++|+||+||..|+..++.+ .+|.+||+.||+.|.+.+ .++.|+.
T Consensus 141 ~~~~~l~~lGV------p~~~Ii~e~~s~nT~eNa~~~~~~~~~------~~iiLVTsa~Hm~RA~~~-f~~~Gl~ 203 (259)
T PRK10494 141 VGARVAQSLGV------PREDIITLDLPKDTEEEAAAVKQAIGD------APFLLVTSASHLPRAMIF-FQQEGLN 203 (259)
T ss_pred HHHHHHHHcCC------CHHHeeeCCCCCCHHHHHHHHHHHhCC------CCEEEECCHHHHHHHHHH-HHHcCCc
Confidence 99999999998 899999999999999999999876632 479999999999999776 6666763
No 5
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=99.79 E-value=3.4e-19 Score=152.33 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=82.0
Q ss_pred CcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 018997 110 KNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSY 189 (347)
Q Consensus 110 ~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy 189 (347)
.++|||+|.+...+ +..++....|++.|++++++++...||||||.+..+ ..+||+.|
T Consensus 2 aD~ivVlG~~~~~~--------------------~~~~~~~~~R~~~a~~L~~~g~~~~il~SGg~~~~~--~~~ea~~~ 59 (155)
T PF02698_consen 2 ADAIVVLGSALDPD--------------------GQLSPESRERLDEAARLYKAGYAPRILFSGGYGHGD--GRSEAEAM 59 (155)
T ss_dssp -SEEEEES-------------------------------S-HHHHHHHHHHHH-HHT--EEEE--SSTTH--TS-HHHHH
T ss_pred CcEEEECCcCcccc--------------------ccccHhHHHHHHHHHHHHhcCCCCeEEECCCCCCCC--CCCHHHHH
Confidence 58999999333222 233567899999999999999999999999999987 58999999
Q ss_pred HHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCC
Q 018997 190 WTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFP 263 (347)
Q Consensus 190 ~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp 263 (347)
.++++++|+ +.++|++|+.|+||+||+.|+...+.+. ++ ++|+|||+.||+.|.+.+ .+..+.+
T Consensus 60 ~~~l~~~gv------p~~~I~~e~~s~~T~ena~~~~~~~~~~--~~-~~iilVT~~~H~~Ra~~~-~~~~~~~ 123 (155)
T PF02698_consen 60 RDYLIELGV------PEERIILEPKSTNTYENARFSKRLLKER--GW-QSIILVTSPYHMRRARMI-FRKVGPD 123 (155)
T ss_dssp HHHHHHT---------GGGEEEE----SHHHHHHHHHHHHHT---SS-S-EEEE--CCCHHHHHHH-HHHHH--
T ss_pred HHHHHhccc------chheeEccCCCCCHHHHHHHHHHHHHhh--cC-CeEEEECCHHHHHHHHHH-HHHhCCC
Confidence 999999998 8899999999999999999999999754 33 799999999999999765 5555555
No 6
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=7.3e-11 Score=106.14 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHH
Q 018997 148 ASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVC 227 (347)
Q Consensus 148 ~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~ 227 (347)
-.+..|+.++.++.+..+.+.++.|||.+..+. .++++...|+ +.++|++|++|+||+||..||+.
T Consensus 78 ~~~~~rl~~~~~~~~~~~~~~v~~s~~~~~~~~--------~~~~~~~~gv------~~~~i~~e~~s~~T~eNa~~s~~ 143 (223)
T COG1434 78 TDHLIRLLEAARLAKILPISGVLESGGVIEIQA--------TRRYLENLGV------PAERIILEDRSRNTVENARFSRR 143 (223)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeccCCcCccHH--------HHHHHHHcCC------CcccEEecCCCccHHHHHHHHHH
Confidence 456788999999999999999998888776442 2899999998 89999999999999999999999
Q ss_pred HHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCC
Q 018997 228 RFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPE 264 (347)
Q Consensus 228 rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~ 264 (347)
.+.+. .|.++++||+.||+.|++.+ ++..|.+.
T Consensus 144 ~l~~~---~~~~~ilVTs~~Hm~Ra~~~-~~~~g~~~ 176 (223)
T COG1434 144 LLRTQ---GPESVILVTSPYHMPRALLL-FRKLGISV 176 (223)
T ss_pred HHHHc---CCceEEEECCHHHHHHHHHH-HHHCCCcc
Confidence 99875 78999999999999999766 66666653
No 7
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=99.00 E-value=2.8e-08 Score=93.10 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=115.5
Q ss_pred CCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 108 KLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 108 ~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
-..++.+|+|.|=|...++ ..+.+..||++|+++++...-.+|++||--+..+ .-|..
T Consensus 55 P~r~vgvVLGtsky~~~g~-------------------~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s---YnEp~ 112 (235)
T COG2949 55 PARQVGVVLGTSKYLAKGP-------------------PNRYYTYRIDAAIALYKAGKVNYLLLSGDNATVS---YNEPR 112 (235)
T ss_pred CccceEEEEeccccccCCC-------------------ccHhHHHHHHHHHHHHhcCCeeEEEEecCCCccc---ccchH
Confidence 3467999999998776532 3478999999999999999999999999988877 68999
Q ss_pred HHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCCCCc
Q 018997 188 SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRF 267 (347)
Q Consensus 188 Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~~~~ 267 (347)
+|.+.+++.|+ +.+.|.+.=--=.|+|-+.=. +++.|. .++||||-.||-+|++-+ |+..|...
T Consensus 113 tM~kdL~~~GV------p~~~i~lDyAGFrTLDSvvRA----~kVF~~--~~ftIItQ~FHceRAlfi-A~~~gIdA--- 176 (235)
T COG2949 113 TMRKDLIAAGV------PAKNIFLDYAGFRTLDSVVRA----RKVFGT--NDFTIITQRFHCERALFI-ARQMGIDA--- 176 (235)
T ss_pred HHHHHHHHcCC------CHHHeeecccCccHHHHHHHH----HHHcCc--CcEEEEecccccHHHHHH-HHHhCCce---
Confidence 99999999998 888888766666788755544 555444 589999999999999765 88777754
Q ss_pred EEecc-CCCCCh--HHHHHHHHHHH--HhhcccCcCCCChh
Q 018997 268 FYSGT-PGSTTS--KEAAMRGEALV--RSQFQEDPYGCLGS 303 (347)
Q Consensus 268 ~yiGi-p~~~~~--~~~~~~gE~~a--~~~f~~DpYG~~~~ 303 (347)
+|. .|+++. --...-+|.+| .+.|..|-.+....
T Consensus 177 --ic~~ap~p~~~~~~~vrlRE~~ARv~Av~D~~I~~~~P~ 215 (235)
T COG2949 177 --ICFAAPDPEGRSGLSVRLREFLARVKAVLDLYILKREPK 215 (235)
T ss_pred --EEecCCCccccCCcchHHHHHHHHHHHHhhhhccccCCc
Confidence 343 122221 11235578765 46666655544443
No 8
>KOG4533 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=7.2e-07 Score=85.60 Aligned_cols=92 Identities=29% Similarity=0.500 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEe-----cccccCCCCC-CC--C----CCccccccccc-ccCCCCchHHHHHHHHHHHHHhhC-C--Cc
Q 018997 104 YPFVKLKNLVMVA-----GHSIYTSSSC-GK--V----DKEDSWFLEPY-QQHPGQAASFVAHIQEGVEIVAKD-D--KA 167 (347)
Q Consensus 104 ~~~~~~~~LIIV~-----gHaIw~g~~~-~~--~----~~e~eW~Lepf-Q~~~g~~~tf~~hI~~ai~~l~~d-p--~a 167 (347)
+.+.....||.|+ ||.||+...+ ++ | ..-.-|++++| |.++.+|++|+.|-..+|..+.+- . .-
T Consensus 2 ~s~~~~v~l~f~asrs~s~~~iwks~spksk~~gv~L~~~l~~~~c~~Fviy~~~~h~~~~~~~~t~l~~~~qpf~nlt~ 81 (317)
T KOG4533|consen 2 YSMDEKVELIFVASRSGSCHSIWKSSSPKSKDNGVNLGQLLEYWHCAPFVIYEGNDHLAFIKHGLTALKLLLQPFDNLTN 81 (317)
T ss_pred CCccccceEEEeecccCCccceeeccCCCccccceeeccceeeeeeeeEEEEcCCCcceeEEeCchhhhhccccccccee
Confidence 3456677899999 9999997643 22 1 24467999999 899999999999999999997754 3 44
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 018997 168 LLLFSGGETRKDAGPRSEAQSYWTVAES 195 (347)
Q Consensus 168 ~LIfSGGqt~~EagpiSEA~Sy~~~a~~ 195 (347)
++||+|-|+..+++.++||++||-+-..
T Consensus 82 lvivaGh~v~~~~s~~gE~~s~wfLe~y 109 (317)
T KOG4533|consen 82 LVIVAGHQVKKEASAIGEAQSYWFLEEY 109 (317)
T ss_pred eEEEecceeeecccccccccchhhhhhh
Confidence 5999999999999999999999987553
No 9
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=58.49 E-value=12 Score=36.49 Aligned_cols=72 Identities=22% Similarity=0.411 Sum_probs=45.0
Q ss_pred CCCCCccccCCCC-c--ccccc-------------ccccccccCCCCCCChhhhhHHHHhhhhhhhhhchHHH---HHHH
Q 018997 10 SNSPKSFTAYPSC-D--FDIES-------------GTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILV---FCIA 70 (347)
Q Consensus 10 ~~~~~~~~~~~~~-~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 70 (347)
+..+-.|.|++|. + ||.|+ |.-||.|||++- +..+.+ .. .||+ |.|--=||+ .=|+
T Consensus 82 s~y~~~~~a~~~~~~~~~d~~~~~~~~E~~e~~~Ngk~KK~RKPRTI-YSS~QL-qa-L~rR--FQkTQYLALPERAeLA 156 (245)
T KOG0850|consen 82 SAYPSYFPAPPRAPHAGFDPEKPSELPEPSERRPNGKGKKVRKPRTI-YSSLQL-QA-LNRR--FQQTQYLALPERAELA 156 (245)
T ss_pred hcccccCCCCCccCcccCCCCCCccccCcceeccCCCcccccCCccc-ccHHHH-HH-HHHH--HhhcchhcCcHHHHHH
Confidence 5566677788885 4 88772 456788999886 444332 22 2344 555555454 6678
Q ss_pred HHHHHHHHHHHHHhhh
Q 018997 71 LSFAVSVLVILLAYES 86 (347)
Q Consensus 71 ~~~~~~~l~~~~~~~~ 86 (347)
-++|||=-=+=+.|..
T Consensus 157 AsLGLTQTQVKIWFQN 172 (245)
T KOG0850|consen 157 ASLGLTQTQVKIWFQN 172 (245)
T ss_pred HHhCCchhHhhhhhhh
Confidence 8889886655555544
No 10
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=45.57 E-value=17 Score=33.92 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHHHHhhCCCcEEEE-----eCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 154 IQEGVEIVAKDDKALLLF-----SGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 154 I~~ai~~l~~dp~a~LIf-----SGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
.+.|++++++.+..++|+ .+|+|---+....||+...+-+...+.|+. ..+.|++||+
T Consensus 26 ~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~---~~~~vvIEE~ 88 (194)
T PF01071_consen 26 YEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGD---AGSKVVIEEF 88 (194)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCC---CGSSEEEEE-
T ss_pred HHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCC---CCCcEEEEec
Confidence 678999999998887443 455554433356789888888887666765 4567888886
No 11
>PRK03670 competence damage-inducible protein A; Provisional
Probab=40.80 E-value=42 Score=32.36 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 152 AHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 152 ~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~S 188 (347)
+.|..+++.+.++..-++|+|||-|.....-..||.+
T Consensus 47 ~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava 83 (252)
T PRK03670 47 EEIKSVVLEILSRKPEVLVISGGLGPTHDDVTMLAVA 83 (252)
T ss_pred HHHHHHHHHHhhCCCCEEEECCCccCCCCCchHHHHH
Confidence 4556666665555557899999988877644555544
No 12
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=39.65 E-value=39 Score=33.05 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 018997 151 VAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVA 193 (347)
Q Consensus 151 ~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a 193 (347)
.++|..+++.+.++ --++|+|||-|+-.. ++| ++++.+.+
T Consensus 47 ~~~I~~~l~~a~~r-~D~vI~tGGLGPT~D-DiT-~e~vAka~ 86 (255)
T COG1058 47 PDRIVEALREASER-ADVVITTGGLGPTHD-DLT-AEAVAKAL 86 (255)
T ss_pred HHHHHHHHHHHHhC-CCEEEECCCcCCCcc-HhH-HHHHHHHh
Confidence 47899999999999 778999999998554 453 44444433
No 13
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=39.44 E-value=26 Score=38.44 Aligned_cols=37 Identities=11% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCC
Q 018997 144 PGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDA 180 (347)
Q Consensus 144 ~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Ea 180 (347)
.|.-..|++|+++||+.--.||+.++|++|+..++..
T Consensus 50 ~GnKsVLmERLkKal~~EG~dPdei~I~~ea~aKK~~ 86 (940)
T KOG4661|consen 50 VGNKSVLMERLKKALRAEGLDPDEILIVPEAKAKKPF 86 (940)
T ss_pred cCcHHHHHHHHHHHHHhcCCCccceeecccccccCcc
Confidence 4556699999999999999999999999999977653
No 14
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=37.83 E-value=92 Score=24.99 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCC----CC--CHHHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAG----PR--SEAQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eag----pi--SEA~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
.+....-+++-+++++++|+..+.+.|=-...... .+ ..|++..++++++|+ +++||.+..+
T Consensus 12 ~~~~~~~L~~~a~~l~~~~~~~i~I~Ghtd~~g~~~~N~~LS~~RA~~V~~~L~~~gi------~~~ri~~~g~ 79 (104)
T TIGR02802 12 KSEAQAILDAHAAYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAKGV------SASQIETVSY 79 (104)
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCC------CHHHeEEEee
Confidence 45667788888999999999777777763321110 01 246777788888887 5666655443
No 15
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=36.78 E-value=21 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=28.9
Q ss_pred CCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 018997 145 GQAASFVAHIQEGVEIVAKDDKALLLFSGGETR 177 (347)
Q Consensus 145 g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~ 177 (347)
-|.|.|+.||+++++++.++|+..-+|=++|-+
T Consensus 229 aEpp~Fv~~ir~~l~fl~~hP~p~~~Fp~~~p~ 261 (274)
T PF14736_consen 229 AEPPHFVEHIRSTLRFLQEHPDPDTLFPDNQPR 261 (274)
T ss_pred CCCchHHHHHHHHHHHHHHCCCHHHhCCCCCce
Confidence 357899999999999999999998889887754
No 16
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=33.15 E-value=49 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHH
Q 018997 60 KLHPILVFCIALSFAVSVLVILLA 83 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~l~~~~~ 83 (347)
|--|++|-++...+.+|+||.|++
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999986
No 17
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=30.48 E-value=1.5e+02 Score=23.12 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCC----CCCC--HHHHHHHHHHHcCC
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDA----GPRS--EAQSYWTVAESKGW 198 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Ea----gpiS--EA~Sy~~~a~~~gi 198 (347)
.+...+.|+.-+.++++++...+.+.|--..... -.+| .|++..+++++.|+
T Consensus 14 ~~~~~~~l~~~~~~l~~~~~~~v~v~g~a~~~g~~~~n~~Ls~~RA~~v~~~L~~~g~ 71 (106)
T cd07185 14 TPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGV 71 (106)
T ss_pred CHHHHHHHHHHHHHHHHCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567788888889999999866766664443211 0123 48888999999887
No 18
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=30.47 E-value=78 Score=28.49 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 153 HIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 153 hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~S 188 (347)
.|.++++.+.+ ..-++|.+||-|........||.+
T Consensus 47 ~I~~~l~~~~~-~~dlVIttGG~G~t~~D~t~ea~~ 81 (170)
T cd00885 47 RIAEALRRASE-RADLVITTGGLGPTHDDLTREAVA 81 (170)
T ss_pred HHHHHHHHHHh-CCCEEEECCCCCCCCCChHHHHHH
Confidence 34455554444 356899999999988755556554
No 19
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=30.22 E-value=70 Score=33.24 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=81.8
Q ss_pred CCCCCCCcEEEEecccccCC----CCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhC-CCcE---EEEeCCC
Q 018997 104 YPFVKLKNLVMVAGHSIYTS----SSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKD-DKAL---LLFSGGE 175 (347)
Q Consensus 104 ~~~~~~~~LIIV~gHaIw~g----~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~d-p~a~---LIfSGGq 175 (347)
.+..+..+.++..||++-.. .....+..-.+|+.+.++... .+..-+..++.....- ...+ =.++|--
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er 351 (502)
T COG1070 276 KPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAE----SYPELLEEALAVPAPAGAIGLLFLPYLSGER 351 (502)
T ss_pred ccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhcccc----CcHHHHHHHHhccCCCCCCCcEEeccccCCc
Confidence 36777788888888875311 111223455788888888733 3333333333332111 1111 1234422
Q ss_pred CCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHH----HHHHHhCCCCCcEEEEcCcchhhH
Q 018997 176 TRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVC----RFRELTGTYPHNITVVSYDFKEER 251 (347)
Q Consensus 176 t~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~----rF~e~tg~yP~kItVVt~~FK~~R 251 (347)
++... + .+... .++ ....-.-++.++--+|++.|+.. .+.++++.-+.+|.|||-..|..-
T Consensus 352 ~p~~~-~--~~r~~--------~~g----~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~ 416 (502)
T COG1070 352 GPHAD-P--AARGG--------FVG----LTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPL 416 (502)
T ss_pred CCCCC-c--cceeE--------EEc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHH
Confidence 22221 1 11100 011 11112335677777888888876 455666777889999999999999
Q ss_pred HHHHHHHHhCCCC
Q 018997 252 FTHLHRSAIGFPE 264 (347)
Q Consensus 252 f~~lH~~Algfp~ 264 (347)
++++-+.++|-|.
T Consensus 417 w~Qi~Ad~~g~~v 429 (502)
T COG1070 417 WLQILADALGLPV 429 (502)
T ss_pred HHHHHHHHcCCee
Confidence 9999999999985
No 20
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.02 E-value=1e+02 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 152 AHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 152 ~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~S 188 (347)
+.|.++++.+.++ ..++|.+||-|.+...-..||..
T Consensus 45 ~~I~~~l~~~~~~-~dliittGG~g~g~~D~t~~~l~ 80 (135)
T smart00852 45 EAIKEALREALER-ADLVITTGGTGPGPDDVTPEAVA 80 (135)
T ss_pred HHHHHHHHHHHhC-CCEEEEcCCCCCCCCcCcHHHHH
Confidence 3444555544444 45889999988766545566543
No 21
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=29.72 E-value=46 Score=32.11 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=23.2
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHcCC
Q 018997 169 LLFSGGETRKDAGPRSEAQSYWTVAESKGW 198 (347)
Q Consensus 169 LIfSGGqt~~EagpiSEA~Sy~~~a~~~gi 198 (347)
|||+|..+-..---.+.+..+|++++++|+
T Consensus 4 vlvagS~~~~NYRh~ad~~~~Y~~l~~~G~ 33 (256)
T PF01650_consen 4 VLVAGSNGWFNYRHQADVCHAYQLLKRNGI 33 (256)
T ss_pred EEEeccCCceeeeEehHHHHHHHHHHHcCC
Confidence 788888875443234677899999999998
No 22
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=29.63 E-value=1.4e+02 Score=26.68 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCC---CCCC-CCCH--HHHHHHHHHHcCC
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETR---KDAG-PRSE--AQSYWTVAESKGW 198 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~---~Eag-piSE--A~Sy~~~a~~~gi 198 (347)
.+.+.+-|+.-.++|+++|...+++.|=--. ++.- .+|| |+|.++||+++|+
T Consensus 95 ~p~~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv 152 (190)
T COG2885 95 KPKAQATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGV 152 (190)
T ss_pred CHhHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999888888774322 1111 3454 7889999999997
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=29.50 E-value=76 Score=27.74 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=45.9
Q ss_pred hhhccccChhHHHHHHHHHHHHHh----CCCCCcEEEEcCcchhhHHHHHHHHHhCCC
Q 018997 210 MTEEHARDSFENLLFSVCRFRELT----GTYPHNITVVSYDFKEERFTHLHRSAIGFP 263 (347)
Q Consensus 210 ltEe~A~DSyENLLFSi~rF~e~t----g~yP~kItVVt~~FK~~Rf~~lH~~Algfp 263 (347)
..++.++--+|-+.|+.....+.. +.-+.+|.++|-..+..-++++.+..+|-|
T Consensus 119 ~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~ 176 (198)
T PF02782_consen 119 TRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRP 176 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCc
Confidence 367888888888888887665444 778899999999999999999999999976
No 24
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.83 E-value=26 Score=36.41 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCchhHHHhhhhcCCC
Q 018997 322 NGCPEIEGLFRYCGTA 337 (347)
Q Consensus 322 ~s~pel~~Ll~~cg~~ 337 (347)
..-|.|++||+|||..
T Consensus 105 LLGPSLEDLFD~CgR~ 120 (449)
T KOG1165|consen 105 LLGPSLEDLFDLCGRR 120 (449)
T ss_pred hhCcCHHHHHHHhcCc
Confidence 4568999999999975
No 25
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=28.41 E-value=52 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=16.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHH
Q 018997 59 KKLHPILVFCIALSFAVSVLVI 80 (347)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~ 80 (347)
.|+.|..|+++++.|++.++++
T Consensus 16 iki~P~~Vl~~si~fi~~V~~L 37 (41)
T PF03911_consen 16 IKIDPKTVLIISIAFIAIVILL 37 (41)
T ss_dssp S-BSCCHHHHHHHHHHHHHHHH
T ss_pred ceeCCeehHHHHHHHHHHHHHH
Confidence 5889999998888888776653
No 26
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=28.32 E-value=31 Score=31.27 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=13.2
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHcCC
Q 018997 170 LFSGGETRKDAGPRSEAQSYWTVAESKGW 198 (347)
Q Consensus 170 IfSGGqt~~EagpiSEA~Sy~~~a~~~gi 198 (347)
|+|||||--+ ++-.+.|+++|+
T Consensus 1 IiSGGQTGvD-------RAALDaAi~~gi 22 (145)
T PF12694_consen 1 IISGGQTGVD-------RAALDAAIAHGI 22 (145)
T ss_dssp EE----TTHH-------HHHHHHHHHTT-
T ss_pred CccCccccHH-------HHHHHHHHHcCC
Confidence 7999999643 677889999876
No 27
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.76 E-value=99 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 018997 144 PGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSY 189 (347)
Q Consensus 144 ~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy 189 (347)
+.+...+.+.|+++++ ..-++|.|||-|.++.....||.+-
T Consensus 50 ~Dd~~~i~~~l~~~~~-----~~DliIttGG~g~g~~D~t~~ai~~ 90 (144)
T TIGR00177 50 PDDPEEIREILRKAVD-----EADVVLTTGGTGVGPRDVTPEALEE 90 (144)
T ss_pred CCCHHHHHHHHHHHHh-----CCCEEEECCCCCCCCCccHHHHHHH
Confidence 4445566666665543 4678999999999886555666553
No 28
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=27.33 E-value=35 Score=31.27 Aligned_cols=15 Identities=40% Similarity=0.766 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 018997 69 IALSFAVSVLVILLA 83 (347)
Q Consensus 69 ~~~~~~~~~l~~~~~ 83 (347)
+.++.|++||++|.+
T Consensus 10 v~i~igi~Ll~lLl~ 24 (158)
T PF11770_consen 10 VAISIGISLLLLLLL 24 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666665
No 29
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=27.30 E-value=1e+02 Score=24.08 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=16.1
Q ss_pred ccCCCCCCChhhhhHHHHhhhhh
Q 018997 35 RRSKKLPLHPLKMIKSFANRFNY 57 (347)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~ 57 (347)
||++...+...++++....+.+-
T Consensus 28 ~~~~~~~fs~~~~l~~~~~~~~~ 50 (77)
T PF07584_consen 28 RRRRRVRFSSLRLLKRLPPSRRS 50 (77)
T ss_pred ccCCCcccCCHHHHHHhCcccch
Confidence 44444478888999887766655
No 30
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=26.42 E-value=73 Score=32.14 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=41.9
Q ss_pred hhhccccChhHHHHHHHHHHHHH----hCCCCCcEEEEcCcchhhHHHHHHHHHhCCCC
Q 018997 210 MTEEHARDSFENLLFSVCRFREL----TGTYPHNITVVSYDFKEERFTHLHRSAIGFPE 264 (347)
Q Consensus 210 ltEe~A~DSyENLLFSi~rF~e~----tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~ 264 (347)
..++.++--+|-+.|......+. .+.-+.+|.|+|...|...++++.+..+|.|.
T Consensus 360 ~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv 418 (481)
T TIGR01312 360 TRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPV 418 (481)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCce
Confidence 35666667777777777664433 33445789999999999999999999999984
No 31
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=26.21 E-value=1.7e+02 Score=27.56 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=43.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCC------CC--HHHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 146 QAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGP------RS--EAQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 146 ~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eagp------iS--EA~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
-.+.+...|++-.+.++++|+..+.+.|= |... |. +| -|++.++|++++|+ +.+||.++-+
T Consensus 123 L~~~~~~~L~~ia~~L~~~p~~~I~I~Gh-TD~~-G~~~~N~~LS~~RA~aV~~~L~~~Gi------~~~ri~~~G~ 191 (219)
T PRK10510 123 LKPAGANTLTGVAMVLKEYPKTAVNVVGY-TDST-GSHDLNMRLSQQRADSVASALITQGV------DASRIRTQGM 191 (219)
T ss_pred cCHHHHHHHHHHHHHHHhCCCceEEEEEe-cCCC-CChHHHHHHHHHHHHHHHHHHHHcCC------ChhhEEEEEE
Confidence 35678888999999999999877777653 3322 12 22 47788899999998 6677766544
No 32
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.14 E-value=1.7e+02 Score=26.78 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=46.4
Q ss_pred HHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCC-CcEEEEcCc------chhhHHHHHHHHHhCCC
Q 018997 192 VAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYP-HNITVVSYD------FKEERFTHLHRSAIGFP 263 (347)
Q Consensus 192 ~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP-~kItVVt~~------FK~~Rf~~lH~~Algfp 263 (347)
.+.+.|+=+. -.+.++.+++-++..=.+.+.-....+++. ++ .+|+|||+. ....|... -.+++|.|
T Consensus 35 ~Lk~~Gik~l-i~DkDNTL~~~~~~~i~~~~~~~~~~l~~~---~~~~~v~IvSNsaGs~~d~~~~~a~~-~~~~lgIp 108 (168)
T PF09419_consen 35 HLKKKGIKAL-IFDKDNTLTPPYEDEIPPEYAEWLNELKKQ---FGKDRVLIVSNSAGSSDDPDGERAEA-LEKALGIP 108 (168)
T ss_pred hhhhcCceEE-EEcCCCCCCCCCcCcCCHHHHHHHHHHHHH---CCCCeEEEEECCCCcccCccHHHHHH-HHHhhCCc
Confidence 4666665111 015678999999888888888887777764 55 389999997 34555533 37888876
No 33
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=25.80 E-value=86 Score=27.85 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH-HhhCCCcEEEEeCCCCCCC
Q 018997 150 FVAHIQEGVEI-VAKDDKALLLFSGGETRKD 179 (347)
Q Consensus 150 f~~hI~~ai~~-l~~dp~a~LIfSGGqt~~E 179 (347)
..++|...++. +++++...|.+|||.|+..
T Consensus 4 ~a~~i~~~i~~~~~~~~~~~i~lsgGsTp~~ 34 (169)
T cd00458 4 ALKFIEDKXEKLLEEKDDMVIGLGTGSTPAY 34 (169)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34555555555 4467889999999999866
No 34
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=24.69 E-value=65 Score=27.60 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=13.9
Q ss_pred CCCcEEEEeCCCCCCCCC
Q 018997 164 DDKALLLFSGGETRKDAG 181 (347)
Q Consensus 164 dp~a~LIfSGGqt~~Eag 181 (347)
+.+.++|||||..+...|
T Consensus 26 ~~~~~iiFsGGmp~~~yg 43 (105)
T PF08366_consen 26 NGEPFIIFSGGMPRASYG 43 (105)
T ss_pred CCCcEEEEeCCccccccC
Confidence 345899999999886544
No 35
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=24.60 E-value=44 Score=32.46 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=12.9
Q ss_pred CCCCCcEEEEecccccCCC
Q 018997 106 FVKLKNLVMVAGHSIYTSS 124 (347)
Q Consensus 106 ~~~~~~LIIV~gHaIw~g~ 124 (347)
+++..|||+|||| |-|-
T Consensus 99 la~~~~lillCGr--YEGi 115 (233)
T TIGR00088 99 LAQNEHLILICGR--YEGF 115 (233)
T ss_pred HhCCCCEEEEecc--ccCc
Confidence 3567899999999 5443
No 36
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=45 Score=32.51 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=11.7
Q ss_pred CCCCCCcEEEEecc
Q 018997 105 PFVKLKNLVMVAGH 118 (347)
Q Consensus 105 ~~~~~~~LIIV~gH 118 (347)
.+++..|||++|||
T Consensus 99 eLa~~~~lv~iCGr 112 (240)
T COG0336 99 ELAKEEHLVLICGR 112 (240)
T ss_pred HHhcCCCEEEEecc
Confidence 34578899999999
No 37
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=23.62 E-value=1.4e+02 Score=25.29 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=24.8
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHH
Q 018997 144 PGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEA 186 (347)
Q Consensus 144 ~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA 186 (347)
+.+...+.+.|+++++ + .-++|.+||-|.++.....||
T Consensus 42 ~Dd~~~i~~~i~~~~~----~-~DlvittGG~g~g~~D~t~~a 79 (133)
T cd00758 42 PDDADSIRAALIEASR----E-ADLVLTTGGTGVGRRDVTPEA 79 (133)
T ss_pred CCCHHHHHHHHHHHHh----c-CCEEEECCCCCCCCCcchHHH
Confidence 4555566666666543 3 468999999998876444443
No 38
>PLN02977 glutathione synthetase
Probab=23.36 E-value=68 Score=34.07 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=28.4
Q ss_pred CcccccccccccCCCCchHHHHHHHHHHHHHhh
Q 018997 131 KEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAK 163 (347)
Q Consensus 131 ~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~ 163 (347)
+++.|.|.| |+|||-+-.|.+-|...++.+.+
T Consensus 360 ~p~~~VLKP-QrEGGGNNiYg~dI~~~L~~l~~ 391 (478)
T PLN02977 360 KPELFVLKP-QREGGGNNIYGDDLRETLERLQK 391 (478)
T ss_pred ChhheeEcC-cCccchhhcchHHHHHHHHHccc
Confidence 568899999 99999999999999999998853
No 39
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=23.31 E-value=1.7e+02 Score=29.23 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=57.4
Q ss_pred CCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 109 LKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 109 ~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~S 188 (347)
.-+++++-||==+.-.. .+---|-.|.. +.-|++-++.|=++ ..|.+.++||-|. -||
T Consensus 153 ~PDIlViTGHD~~~K~~------~d~~dl~~Yrn----SkyFVeaVk~aR~y-~~~~D~LVIFAGA-----------CQS 210 (283)
T TIGR02855 153 RPDILVITGHDAYSKNK------GNYMDLNAYRH----SKYFVETVREARKY-VPSLDQLVIFAGA-----------CQS 210 (283)
T ss_pred CCCEEEEeCchhhhcCC------CChhhhhhhhh----hHHHHHHHHHHHhc-CCCcccEEEEcch-----------hHH
Confidence 45788888986553211 01112344554 45677655554333 3367899999884 489
Q ss_pred HHHHHHHcCCCCCCcccccchhh---------hccccChhHHHHHH
Q 018997 189 YWTVAESKGWFGNEESVRWRAMT---------EEHARDSFENLLFS 225 (347)
Q Consensus 189 y~~~a~~~gif~~~~~~~~RIlt---------Ee~A~DSyENLLFS 225 (347)
+|.-+++.|- ++.+.+.|+++ |--|-.++.+..--
T Consensus 211 ~yEall~AGA--NFASSP~RVlIHalDPV~i~eKia~T~i~~~V~i 254 (283)
T TIGR02855 211 HFESLIRAGA--NFASSPSRVNIHALDPVYIVEKISFTPFMERVNI 254 (283)
T ss_pred HHHHHHHcCc--cccCCccceEEeccCcceeEEeeeeccccceecH
Confidence 9999999987 66667777653 55555555554433
No 40
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=23.27 E-value=5.2e+02 Score=22.83 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhC
Q 018997 156 EGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTG 234 (347)
Q Consensus 156 ~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg 234 (347)
.+.++|.+. ...+++++|..+.... ...--+.+.+.+.++|+- ....++.+ ..++.+. ....+.++..
T Consensus 106 ~~~~~l~~~g~~~i~~l~~~~~~~~~-~~~r~~gf~~~~~~~~~~-----~~~~~~~~--~~~~~~~---~~~~~~~~l~ 174 (268)
T cd06298 106 EATELLIKNGHKKIAFISGPLEDSIN-GDERLAGYKEALSEANIE-----FDESLIFE--GDYTYES---GYELAEELLE 174 (268)
T ss_pred HHHHHHHHcCCceEEEEeCCcccccc-hhHHHHHHHHHHHHcCCC-----CCHHHeEe--CCCChhH---HHHHHHHHhc
Confidence 455666655 4555666654431221 223346677788777750 01111111 1112221 2223333333
Q ss_pred CCCCcEEEEcCcchhhHHHHHHHHHhCCC-CCCcEEeccCC
Q 018997 235 TYPHNITVVSYDFKEERFTHLHRSAIGFP-ESRFFYSGTPG 274 (347)
Q Consensus 235 ~yP~kItVVt~~FK~~Rf~~lH~~Algfp-~~~~~yiGip~ 274 (347)
..|.+..+++++.--...++. ++..|.. .+++..+|.+.
T Consensus 175 ~~~~~ai~~~~d~~a~~~~~~-l~~~g~~vp~di~vvg~d~ 214 (268)
T cd06298 175 DGKPTAAFVTDDELAIGILNA-AQDAGLKVPEDFEIIGFNN 214 (268)
T ss_pred CCCCCEEEEcCcHHHHHHHHH-HHHcCCCCccceEEEeecc
Confidence 444556666666654445443 4444553 35799999864
No 41
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=23.25 E-value=1.5e+02 Score=25.93 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=12.2
Q ss_pred HHhCCCCCCcEEeccC
Q 018997 258 SAIGFPESRFFYSGTP 273 (347)
Q Consensus 258 ~Algfp~~~~~yiGip 273 (347)
.+.|.|++++...|||
T Consensus 153 ~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 153 IERGIPPERIHVTGIP 168 (169)
T ss_pred HHcCCChhHEEEeCcc
Confidence 4468888888888877
No 42
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=23.23 E-value=87 Score=28.97 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEeCCCCCCC
Q 018997 149 SFVAHIQEGVEIV-AKDDKALLLFSGGETRKD 179 (347)
Q Consensus 149 tf~~hI~~ai~~l-~~dp~a~LIfSGGqt~~E 179 (347)
.+.++|...++.. ++++.+.|.+|||.|+..
T Consensus 6 ~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~ 37 (219)
T cd01400 6 ALADRIAEALAAAIAKRGRFSLALSGGSTPKP 37 (219)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEECCCccHHH
Confidence 4566666666653 456889999999999754
No 43
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.63 E-value=1.4e+02 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCC
Q 018997 153 HIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGW 198 (347)
Q Consensus 153 hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gi 198 (347)
+|.++|+.+.+.-...+|++||..++- |+.+ .++|.++|+
T Consensus 19 ~i~~~Ld~~~~~~~~~~lvhGga~~Ga-----D~iA-~~wA~~~gv 58 (71)
T PF10686_consen 19 LIWAALDKVHARHPDMVLVHGGAPKGA-----DRIA-ARWARERGV 58 (71)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCH-----HHHH-HHHHHHCCC
Confidence 467777766655444679999995443 2222 346677776
No 44
>PRK06242 flavodoxin; Provisional
Probab=22.27 E-value=2.4e+02 Score=23.69 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=34.5
Q ss_pred EEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 018997 113 VMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTV 192 (347)
Q Consensus 113 IIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~ 192 (347)
.||.|-.+|.+..+ .....|++++.. + ++....++.++|.+.+. ....+...
T Consensus 46 ~ii~g~pvy~~~~~------------------~~~~~fl~~~~~----~-~~k~~~~f~t~g~~~~~-----~~~~l~~~ 97 (150)
T PRK06242 46 LIGFGSGIYFGKFH------------------KSLLKLIEKLPP----V-SGKKAFIFSTSGLPFLK-----YHKALKKK 97 (150)
T ss_pred EEEEeCchhcCCcC------------------HHHHHHHHhhhh----h-cCCeEEEEECCCCCcch-----HHHHHHHH
Confidence 45556678876543 223456555532 1 45566667788776543 26677777
Q ss_pred HHHcCC
Q 018997 193 AESKGW 198 (347)
Q Consensus 193 a~~~gi 198 (347)
+.+.|+
T Consensus 98 l~~~g~ 103 (150)
T PRK06242 98 LKEKGF 103 (150)
T ss_pred HHHCCC
Confidence 777775
No 45
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=21.51 E-value=1.7e+02 Score=26.04 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 144 PGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 144 ~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.+...+.+.|++++ ..+..-++|.|||-|.++..-..||.
T Consensus 45 ~Dd~~~i~~~l~~~~---~~~~~DlVIttGGtg~g~~D~t~eal 85 (163)
T TIGR02667 45 KDDIYQIRAQVSAWI---ADPDVQVILITGGTGFTGRDVTPEAL 85 (163)
T ss_pred CCCHHHHHHHHHHHH---hcCCCCEEEECCCcCCCCCCCcHHHH
Confidence 444445555554433 22445689999999998875666654
No 46
>PRK01215 competence damage-inducible protein A; Provisional
Probab=21.27 E-value=1.1e+02 Score=29.77 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHH
Q 018997 152 AHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEA 186 (347)
Q Consensus 152 ~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA 186 (347)
+.|.++++.+.++. -++|.|||-|..+..-..||
T Consensus 50 ~~I~~~l~~a~~~~-DlVIttGG~g~t~dD~t~ea 83 (264)
T PRK01215 50 EEIVSAFREAIDRA-DVVVSTGGLGPTYDDKTNEG 83 (264)
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCcCChhhhHHHH
Confidence 44666666666544 68999999999886444444
No 47
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=21.02 E-value=56 Score=31.94 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=12.6
Q ss_pred CCCCCcEEEEecccccCCC
Q 018997 106 FVKLKNLVMVAGHSIYTSS 124 (347)
Q Consensus 106 ~~~~~~LIIV~gHaIw~g~ 124 (347)
+++..|||+|||| |-|-
T Consensus 102 ls~~~~lillCGr--YEGi 118 (244)
T PRK00026 102 LAKEEHLILLCGR--YEGI 118 (244)
T ss_pred HhCCCCEEEEecc--ccCh
Confidence 3557899999999 5443
No 48
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=21.02 E-value=1.2e+02 Score=32.34 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=52.5
Q ss_pred CCCcEEEEecccccCCCCCCCC-CCcccccccccccCCCCchHHHHHHHHHHHHHhhCCC-cEEEEeCCCCCCCCCCCCH
Q 018997 108 KLKNLVMVAGHSIYTSSSCGKV-DKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDK-ALLLFSGGETRKDAGPRSE 185 (347)
Q Consensus 108 ~~~~LIIV~gHaIw~g~~~~~~-~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~-a~LIfSGGqt~~EagpiSE 185 (347)
...++++|.||+==.=. ..-. ..+.+|++..=|.+.|.. +..|...+.++.+ -+||+.| +. |+-.
T Consensus 44 ~~~~i~vVvGh~ae~V~-~~~~~~~~v~~v~Q~eqlGTgHA------V~~a~~~l~~~~~g~vLVl~G-----D~-PLit 110 (460)
T COG1207 44 GPDDIVVVVGHGAEQVR-EALAERDDVEFVLQEEQLGTGHA------VLQALPALADDYDGDVLVLYG-----DV-PLIT 110 (460)
T ss_pred CcceEEEEEcCCHHHHH-HHhccccCceEEEecccCChHHH------HHhhhhhhhcCCCCcEEEEeC-----Cc-ccCC
Confidence 46789999999852100 1111 124899998889855433 6778888876654 7788877 33 8889
Q ss_pred HHHHHHHHHHc
Q 018997 186 AQSYWTVAESK 196 (347)
Q Consensus 186 A~Sy~~~a~~~ 196 (347)
++++.+++..+
T Consensus 111 ~~TL~~L~~~~ 121 (460)
T COG1207 111 AETLEELLAAH 121 (460)
T ss_pred HHHHHHHHHhh
Confidence 99999887765
No 49
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=20.81 E-value=2.2e+02 Score=27.53 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCC--------HHHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 146 QAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRS--------EAQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 146 ~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiS--------EA~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
-.+.....+++-+++++++|+..+++.| -|... |+.. -|++..+|++++|+ +++||.++-+
T Consensus 146 L~p~~~~~L~~iA~~Lk~~p~~~V~I~G-HTD~~-Gs~~~N~~LS~~RA~aV~~yLv~~GI------~~~RI~~~G~ 214 (239)
T TIGR03789 146 IEPHFQPQLDEVATLMKQSPELKLDLSG-YADRR-GDSQYNQALSEQRVLEVRSYLIKQGV------DEARLTTQAF 214 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCeEEEEE-eCCCC-CChhhHHHHHHHHHHHHHHHHHHcCC------CHHHEEEEEe
Confidence 3568888999999999999987666654 33322 2222 46778889999998 6777766433
No 50
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=20.40 E-value=1.2e+02 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 018997 67 FCIALSFAVSVLVILLAYES 86 (347)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~ 86 (347)
-.++.+||+.++++..+|+.
T Consensus 8 ~~lan~lG~~~~~LIVlYH~ 27 (35)
T PF10215_consen 8 YTLANFLGVAAMVLIVLYHF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677889999988888875
No 51
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=20.33 E-value=93 Score=32.18 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhCCC-cEEEEeCCCCC
Q 018997 149 SFVAHIQEGVEIVAKDDK-ALLLFSGGETR 177 (347)
Q Consensus 149 tf~~hI~~ai~~l~~dp~-a~LIfSGGqt~ 177 (347)
...+.+++|++|++++|. .-+|+|||--=
T Consensus 141 ~~~~~~~~al~YIa~hPeI~eVllSGGDPL 170 (369)
T COG1509 141 FNKEEWDKALDYIAAHPEIREVLLSGGDPL 170 (369)
T ss_pred CCHHHHHHHHHHHHcCchhheEEecCCCcc
Confidence 378999999999999986 45889999543
Done!