Query 018997
Match_columns 347
No_of_seqs 186 out of 276
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ca8_A Protein YDCF; two domai 99.8 6.2E-18 2.1E-22 159.1 13.7 115 108-263 35-169 (266)
2 2aiz_P Outer membrane protein 60.9 3.1 0.00011 34.6 1.5 61 147-213 42-108 (134)
3 2hqs_H Peptidoglycan-associate 48.7 36 0.0012 27.2 6.0 59 148-214 19-85 (118)
4 2g2c_A Putative molybdenum cof 39.2 34 0.0012 29.0 4.7 36 152-187 56-91 (167)
5 1mkz_A Molybdenum cofactor bio 34.7 37 0.0013 29.0 4.2 36 152-187 55-91 (172)
6 2is8_A Molybdopterin biosynthe 33.8 48 0.0016 28.0 4.7 36 152-187 48-84 (164)
7 2ww9_C Protein transport prote 31.1 23 0.00077 28.5 2.0 22 59-80 57-78 (87)
8 1y5e_A Molybdenum cofactor bio 31.0 56 0.0019 27.7 4.7 36 152-187 58-94 (169)
9 3pzy_A MOG; ssgcid, seattle st 30.5 54 0.0018 27.9 4.5 45 138-187 44-88 (164)
10 2pbq_A Molybdenum cofactor bio 29.5 61 0.0021 27.8 4.7 36 152-187 54-90 (178)
11 3cyp_B Chemotaxis protein MOTB 29.1 1.1E+02 0.0039 24.8 6.1 60 147-212 16-86 (138)
12 1uuy_A CNX1, molybdopterin bio 29.1 63 0.0022 27.3 4.7 35 153-187 58-93 (167)
13 3iwt_A 178AA long hypothetical 28.3 58 0.002 27.5 4.3 35 152-186 67-102 (178)
14 3lhi_A Putative 6-phosphogluco 27.1 48 0.0017 29.7 3.8 65 149-223 17-85 (232)
15 3imk_A Putative molybdenum car 26.6 26 0.0009 30.9 1.8 27 165-198 6-32 (158)
16 1jlj_A Gephyrin; globular alph 26.5 73 0.0025 27.8 4.7 37 152-188 64-101 (189)
17 3kbq_A Protein TA0487; structu 26.5 54 0.0019 28.6 3.8 39 144-187 46-84 (172)
18 3td3_A Outer membrane protein 26.1 1.5E+02 0.0051 23.4 6.2 58 148-213 27-93 (123)
19 3k4h_A Putative transcriptiona 24.5 2.7E+02 0.0092 23.7 8.0 108 154-274 119-229 (292)
20 1di6_A MOGA, molybdenum cofact 24.3 84 0.0029 27.7 4.7 36 152-187 52-88 (195)
21 3lwd_A 6-phosphogluconolactona 24.1 73 0.0025 28.5 4.3 66 149-224 16-85 (226)
22 2pjk_A 178AA long hypothetical 23.3 80 0.0027 27.2 4.3 35 152-186 67-102 (178)
23 2wwb_C SEC61BETA, protein tran 23.2 29 0.00097 28.3 1.3 31 50-80 51-87 (96)
24 3oc9_A UDP-N-acetylglucosamine 22.8 43 0.0015 33.2 2.7 105 147-271 17-129 (405)
25 3nwp_A 6-phosphogluconolactona 22.1 52 0.0018 29.6 3.0 66 149-224 20-89 (233)
26 2kgw_A Outer membrane protein 21.4 2.2E+02 0.0076 22.6 6.4 60 147-214 36-103 (129)
27 3rfq_A Pterin-4-alpha-carbinol 21.3 1E+02 0.0035 27.0 4.7 75 107-186 29-110 (185)
28 3ldt_A Outer membrane protein, 20.9 1.4E+02 0.0048 25.3 5.3 59 148-213 67-132 (169)
29 2k1s_A Inner membrane lipoprot 20.6 1.6E+02 0.0055 24.2 5.5 60 147-214 46-113 (149)
30 3oon_A Outer membrane protein 20.3 2.1E+02 0.0073 22.4 6.0 59 148-214 30-97 (123)
No 1
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=99.75 E-value=6.2e-18 Score=159.11 Aligned_cols=115 Identities=20% Similarity=0.187 Sum_probs=98.2
Q ss_pred CCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCC----------
Q 018997 108 KLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETR---------- 177 (347)
Q Consensus 108 ~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~---------- 177 (347)
...+.|||+|.++. .|+++|++++++.+.. ||||||+|.
T Consensus 35 ~~~D~IVVLG~~~~------------------------------~Rl~~A~~L~~~g~~~-lIvSGG~g~~t~~~~~~v~ 83 (266)
T 3ca8_A 35 YQADCVILAGNAVM------------------------------PTIDAACKIARDQQIP-LLISGGIGHSTTFLYSAIA 83 (266)
T ss_dssp CCCSEEEEESCCCH------------------------------HHHHHHHHHHHHHTCC-EEEECCSSTTHHHHHHHHH
T ss_pred CCCCEEEECCCCch------------------------------HHHHHHHHHHHcCCCc-EEEECCCCCcccchhhhhc
Confidence 36899999998873 3899999999999876 789999998
Q ss_pred ---------CCCCCCCHHHHHHHHHHHc-CCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcc
Q 018997 178 ---------KDAGPRSEAQSYWTVAESK-GWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDF 247 (347)
Q Consensus 178 ---------~EagpiSEA~Sy~~~a~~~-gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~F 247 (347)
++ ..|||+.|.++|+++ |+ +.++|++|++|+||+||+.||..++.+. |--+.+|+|||+.|
T Consensus 84 ~~~~y~~l~~~--~~sEA~~m~~~l~~~~GV------p~~~IllE~~S~nT~ENa~~s~~ll~~~-g~~~~~iiLVTs~~ 154 (266)
T 3ca8_A 84 QHPHYNTIRTT--GRAEATILADIAHQFWHI------PHEKIWIEDQSTNCGENARFSIALLNQA-VERVHTAIVVQDPT 154 (266)
T ss_dssp TCTTGGGSCCT--TSCHHHHHHHHHHHTTCC------CGGGEEEECCCCSHHHHHHHHHHHHHTC-SSCCSCEEEECCTT
T ss_pred cccccccccCC--CCCHHHHHHHHHHHhcCC------CHHHEEeCCCCccHHHHHHHHHHHHHhc-CCCCCeEEEECChh
Confidence 24 689999999999998 98 8999999999999999999999999763 32347999999999
Q ss_pred hhhHHHHHHHHHhCCC
Q 018997 248 KEERFTHLHRSAIGFP 263 (347)
Q Consensus 248 K~~Rf~~lH~~Algfp 263 (347)
|+.|.+-. ++..+..
T Consensus 155 Hm~RA~~~-f~~~~~~ 169 (266)
T 3ca8_A 155 MQRRTMAT-FRRMTGD 169 (266)
T ss_dssp THHHHHHH-HHHHHCC
T ss_pred HHHHHHHH-HHHhCCC
Confidence 99999876 4444443
No 2
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=60.88 E-value=3.1 Score=34.57 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCC----CCCCH--HHHHHHHHHHcCCCCCCcccccchhhhc
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDA----GPRSE--AQSYWTVAESKGWFGNEESVRWRAMTEE 213 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Ea----gpiSE--A~Sy~~~a~~~gif~~~~~~~~RIltEe 213 (347)
.+.....|++-+++|+++|+..|.+.|=-..... -.+|+ |++..+||+++|+ +.+||.++-
T Consensus 42 ~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi------~~~ri~~~g 108 (134)
T 2aiz_P 42 TGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGV------DAGKLGTVS 108 (134)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTC------CGGGEEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCC------CHHHEEEEE
Confidence 4677888999999999999877777663222110 02455 8889999999987 666776643
No 3
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=48.73 E-value=36 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCC------CCCH--HHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 148 ASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAG------PRSE--AQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 148 ~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eag------piSE--A~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
+.....|++-+++|+++|+..+.+.|= |... | .+|+ |++..+|++++|+ +.+||.++-+
T Consensus 19 ~~~~~~L~~ia~~l~~~p~~~i~I~Gh-tD~~-G~~~~N~~LS~~RA~aV~~~L~~~Gi------~~~ri~~~g~ 85 (118)
T 2hqs_H 19 SDFAQMLDAHANFLRSNPSYKVTVEGH-ADER-GTPEYNISLGERRANAVKMYLQGKGV------SADQISIVSY 85 (118)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCEEEEEC-CCSS-SCHHHHHHHHHHHHHHHHHHHHHTTC------CGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEE-CCCC-CCHHHHHHHHHHHHHHHHHHHHHcCC------CHHHEEEEEe
Confidence 455677888889999999877777663 3322 1 2444 8889999999987 6677766443
No 4
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=39.24 E-value=34 Score=29.00 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 152 AHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 152 ~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.|.++++.+.++..-++|.|||-|..+..-..||.
T Consensus 56 ~~I~~~l~~a~~~~~DlVittGG~g~~~~D~t~ea~ 91 (167)
T 2g2c_A 56 DTVVEAIATALKQGARFIITAGGTGIRAKNQTPEAT 91 (167)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCcChHHHH
Confidence 455556655555435689999999887763344554
No 5
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=34.75 E-value=37 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.|.++|+.+.++ ..-++|.|||-|..+..-..||.
T Consensus 55 ~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~t~ea~ 91 (172)
T 1mkz_A 55 YAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEAL 91 (172)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCCHHHHH
Confidence 4555566555554 35688999999887763334543
No 6
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=33.81 E-value=48 Score=28.00 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.|.++|+.+.++ ..-++|.|||-|..+..-..||.
T Consensus 48 ~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~ 84 (164)
T 2is8_A 48 PMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEAT 84 (164)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHH
Confidence 3445555554443 45688999999887763344554
No 7
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=31.05 E-value=23 Score=28.48 Aligned_cols=22 Identities=18% Similarity=0.529 Sum_probs=17.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHH
Q 018997 59 KKLHPILVFCIALSFAVSVLVI 80 (347)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~ 80 (347)
.|+.|..|+++++.|.++++++
T Consensus 57 lKV~P~~VLv~sl~FIa~VilL 78 (87)
T 2ww9_C 57 FRVDSLVVLFLSVGFIFSVIAL 78 (87)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEcCeeehhhHHHHHHHHHHH
Confidence 4789999999999888776654
No 8
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=30.96 E-value=56 Score=27.68 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.|.++|+.+.++ ..-++|.|||-|..+..-..||.
T Consensus 58 ~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~ 94 (169)
T 1y5e_A 58 ESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAV 94 (169)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCcHHHH
Confidence 4455555555552 45688999999887763344554
No 9
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=30.50 E-value=54 Score=27.94 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=26.8
Q ss_pred cccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 138 EPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 138 epfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
..+..-+.+ ..+.+.|++++ ++..-++|.|||-+.++..-..||.
T Consensus 44 ~~~~iv~Dd-~~i~~al~~a~----~~~~DlVittGG~s~g~~D~t~eal 88 (164)
T 3pzy_A 44 AQPEVVADG-SPVGEALRKAI----DDDVDVILTSGGTGIAPTDSTPDQT 88 (164)
T ss_dssp CCCEEECSS-HHHHHHHHHHH----HTTCSEEEEESCCSSSTTCCHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHH----hCCCCEEEECCCCCCCCCccHHHHH
Confidence 334444455 55555555544 3345689999999988764444543
No 10
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=29.51 E-value=61 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.|.++|+.+.++ ..-++|.|||-|..+..-..||.
T Consensus 54 ~~I~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~ 90 (178)
T 2pbq_A 54 DLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEAT 90 (178)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHH
Confidence 3444455554442 45688999999887763344554
No 11
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=29.10 E-value=1.1e+02 Score=24.85 Aligned_cols=60 Identities=12% Similarity=-0.020 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHHhhCC-CcEEEEeCCCCCCCC--C------CCC--HHHHHHHHHHHcCCCCCCcccccchhhh
Q 018997 147 AASFVAHIQEGVEIVAKDD-KALLLFSGGETRKDA--G------PRS--EAQSYWTVAESKGWFGNEESVRWRAMTE 212 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp-~a~LIfSGGqt~~Ea--g------piS--EA~Sy~~~a~~~gif~~~~~~~~RIltE 212 (347)
.+.....|++-+++|+++| ...+.+.|=-..... + .+| -|++-.+|++++|+ +.+||.+.
T Consensus 16 ~~~~~~~L~~ia~~l~~~p~~~~i~I~GhtD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv------~~~ri~~~ 86 (138)
T 3cyp_B 16 NQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGV------NPNQLSFS 86 (138)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTC------CGGGEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCcEEEEEEecCCCCcccccchhHHHHHHHHHHHHHHHHHHcCC------CHHHEEEE
Confidence 4677888999999999998 777777664332211 0 133 46667788888887 56666553
No 12
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=29.07 E-value=63 Score=27.25 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHHHHHHHHhh-CCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 153 HIQEGVEIVAK-DDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 153 hI~~ai~~l~~-dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
.|.++|+.+.+ +..-++|.|||-|.++..-..||.
T Consensus 58 ~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~ 93 (167)
T 1uuy_A 58 RIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEAT 93 (167)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHH
Confidence 34444444443 345688999999887763445554
No 13
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=28.34 E-value=58 Score=27.49 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEA 186 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA 186 (347)
+.|.++++.+... ..-++|.|||-|..+..-..||
T Consensus 67 ~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea 102 (178)
T 3iwt_A 67 IKILKAFTDALSIDEVDVIISTGGTGYSPTDITVET 102 (178)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHH
Confidence 5677777766544 4468889999998876334444
No 14
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=27.14 E-value=48 Score=29.68 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHHHHHHHHHH-HHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCC-CCCCc--ccccchhhhccccChhHHHH
Q 018997 149 SFVAHIQEGVE-IVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGW-FGNEE--SVRWRAMTEEHARDSFENLL 223 (347)
Q Consensus 149 tf~~hI~~ai~-~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gi-f~~~~--~~~~RIltEe~A~DSyENLL 223 (347)
...++|...++ .+++++...|++|||.|+.. +|+.+.+.++ |..-. -..+|. +..-.-+|+..++
T Consensus 17 ~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~---------~y~~L~~~~i~w~~v~~f~~DEr~-vp~~~~~Sn~~~~ 85 (232)
T 3lhi_A 17 SLADAVADALQGALDEKGGAVLAVSGGRSPIA---------FFNALSQKDLDWKNVGITLADERI-VPTNHADSNTGLV 85 (232)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEECCSSTTHH---------HHHHHHTSCCCGGGEEEEESEEES-SCTTSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHH---------HHHHHHhcCCCchheEEEEeeecc-CCCCChHHHHHHH
Confidence 44555544443 34567899999999998744 4555655544 11100 023466 3444556666654
No 15
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=26.58 E-value=26 Score=30.85 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=20.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCC
Q 018997 165 DKALLLFSGGETRKDAGPRSEAQSYWTVAESKGW 198 (347)
Q Consensus 165 p~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gi 198 (347)
|.-.=|+|||||--+ ++-.+.|+++|+
T Consensus 6 ~~~~kIiSGGQTGvD-------raALd~A~~~gi 32 (158)
T 3imk_A 6 PAITKIISGGQTGAD-------RAALDFAIKHHI 32 (158)
T ss_dssp CCCCEEECCCCTTHH-------HHHHHHHHHTTC
T ss_pred ccceEEeeCCcchHH-------HHHHHHHHHcCC
Confidence 444569999999643 677899999876
No 16
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=26.50 E-value=73 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~S 188 (347)
+.|.++++.+.++ ..-++|.|||-|.++..-..||.+
T Consensus 64 ~~I~~al~~a~~~~~~DlVIttGGtg~g~~D~t~eal~ 101 (189)
T 1jlj_A 64 EEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATK 101 (189)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCCCCCCCcccHHHHHH
Confidence 4455555555443 456889999998877634456554
No 17
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.45 E-value=54 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997 144 PGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 144 ~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.+...+.+.|++++ ++ .-++|.|||-|..+..-..||.
T Consensus 46 ~Dd~~~I~~~l~~a~----~~-~DlVittGG~g~~~~D~T~ea~ 84 (172)
T 3kbq_A 46 MDDLDEIGWAFRVAL----EV-SDLVVSSGGLGPTFDDMTVEGF 84 (172)
T ss_dssp CSCHHHHHHHHHHHH----HH-CSEEEEESCCSSSTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHH----hc-CCEEEEcCCCcCCcccchHHHH
Confidence 444445555554444 33 4688999999987763334443
No 18
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=26.08 E-value=1.5e+02 Score=23.37 Aligned_cols=58 Identities=21% Similarity=0.145 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCC------CC--HHHHHHHHHHH-cCCCCCCcccccchhhhc
Q 018997 148 ASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGP------RS--EAQSYWTVAES-KGWFGNEESVRWRAMTEE 213 (347)
Q Consensus 148 ~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eagp------iS--EA~Sy~~~a~~-~gif~~~~~~~~RIltEe 213 (347)
+.....|++-+++|+++|+..+.+.|= |... |. +| -|++-.+|+++ .|+ +.+||.++-
T Consensus 27 ~~~~~~L~~~a~~l~~~~~~~i~I~Gh-tD~~-g~~~~N~~LS~~RA~aV~~~L~~~~Gi------~~~ri~~~g 93 (123)
T 3td3_A 27 DQYKPEIAKVAEKLSEYPNATARIEGH-TDNT-GPRKLNERLSLARANSVKSALVNEYNV------DASRLSTQG 93 (123)
T ss_dssp GGGHHHHHHHHHHHHHSTTCEEEEEEC-CCSC-SCHHHHHHHHHHHHHHHHHHHHHHSCC------CGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEE-eCCC-CCHHHHHHHHHHHHHHHHHHHHHhhCC------CHHHEEEEE
Confidence 455667888889999999987777754 4332 22 22 26778888987 587 666665543
No 19
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=24.51 E-value=2.7e+02 Score=23.71 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=57.0
Q ss_pred HHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHH
Q 018997 154 IQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFREL 232 (347)
Q Consensus 154 I~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~ 232 (347)
...++++|.+. ...+++++|..+... ...--++|.+.+.+.|+- . ....+. ....+.+. ....+.++
T Consensus 119 g~~a~~~L~~~G~~~i~~i~~~~~~~~--~~~R~~gf~~~l~~~g~~-~---~~~~~~---~~~~~~~~---~~~~~~~~ 186 (292)
T 3k4h_A 119 AREVAEYLISLGHKQIAFIGGGSDLLV--TRDRLAGMSDALKLADIV-L---PKEYIL---HFDFSRES---GQQAVEEL 186 (292)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCTTBHH--HHHHHHHHHHHHHHTTCC-C---CGGGEE---ECCSSHHH---HHHHHHHH
T ss_pred HHHHHHHHHHCCCceEEEEeCcccchh--HHHHHHHHHHHHHHcCCC-C---ChheEE---ecCCCHHH---HHHHHHHH
Confidence 45567777666 445555555433211 123456788888888761 0 111121 11222222 23334444
Q ss_pred hCCCC-CcEEEEcCcchhhHHHHHHHHHhCCC-CCCcEEeccCC
Q 018997 233 TGTYP-HNITVVSYDFKEERFTHLHRSAIGFP-ESRFFYSGTPG 274 (347)
Q Consensus 233 tg~yP-~kItVVt~~FK~~Rf~~lH~~Algfp-~~~~~yiGip~ 274 (347)
....| ....++.++.--..+++. ++..|.. .+.+..+|.+.
T Consensus 187 l~~~~~~~ai~~~~d~~a~g~~~a-l~~~g~~vP~di~vig~d~ 229 (292)
T 3k4h_A 187 MGLQQPPTAIMATDDLIGLGVLSA-LSKKGFVVPKDVSIVSFNN 229 (292)
T ss_dssp HTSSSCCSEEEESSHHHHHHHHHH-HHHTTCCTTTTCEEEEESC
T ss_pred HcCCCCCcEEEEcChHHHHHHHHH-HHHhCCCCCCeEEEEEecC
Confidence 44444 456666777655555443 5677775 46899999864
No 20
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=24.27 E-value=84 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~ 187 (347)
+.|.++++.+.++ ..-++|.|||-|..+..-..||.
T Consensus 52 ~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~ 88 (195)
T 1di6_A 52 AIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDAT 88 (195)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHH
Confidence 4566666665554 45788999999987763445654
No 21
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=24.14 E-value=73 Score=28.54 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH-HhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCC-CCCCc--ccccchhhhccccChhHHHHH
Q 018997 149 SFVAHIQEGVEI-VAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGW-FGNEE--SVRWRAMTEEHARDSFENLLF 224 (347)
Q Consensus 149 tf~~hI~~ai~~-l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gi-f~~~~--~~~~RIltEe~A~DSyENLLF 224 (347)
...++|...++. +++++...|++|||.|+.. +|+.+.+.++ |..-. -..+|. +..-.-+|+..++-
T Consensus 16 ~~A~~i~~~i~~~i~~~~~~~l~LsgGstp~~---------~y~~L~~~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~ 85 (226)
T 3lwd_A 16 RLADTVAQALEADLAKRERALLVVSGGSTPKP---------FFTSLAAKALPWARVDVTLADERW-VTADDADSNARLVR 85 (226)
T ss_dssp HHHHHHHHHHHHHHTTSSCEEEEECCSSTTHH---------HHHHHHTSCSCGGGEEEEESEEES-SCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHH---------HHHHHHhcCCCchhEEEEEeeecc-cCCCChHHHHHHHH
Confidence 455555555543 4567889999999998743 5555555543 11100 023577 45555567665543
No 22
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.35 E-value=80 Score=27.20 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHH
Q 018997 152 AHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEA 186 (347)
Q Consensus 152 ~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA 186 (347)
+.|.++|+.+.++ ..-++|.|||-|.++..-..||
T Consensus 67 ~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~ea 102 (178)
T 2pjk_A 67 IKILKAFTDALSIDEVDVIISTGGTGYSPTDITVET 102 (178)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHH
Confidence 4455555555444 3568899999988775333443
No 23
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=23.19 E-value=29 Score=28.35 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=18.1
Q ss_pred HHHhhhhhh------hhhchHHHHHHHHHHHHHHHHH
Q 018997 50 SFANRFNYY------KKLHPILVFCIALSFAVSVLVI 80 (347)
Q Consensus 50 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~ 80 (347)
|-+.=+||| .|+.|..|+++++.|++.++++
T Consensus 51 SsaGllRfY~dds~GlKV~P~~VLv~sl~Fi~~Vi~L 87 (96)
T 2wwb_C 51 GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFML 87 (96)
T ss_dssp ----------CCSCCCCCSSCSHHHHHHHHHHHHHHH
T ss_pred CCcceeeeeecCCCceEECCEEehhhHHHHHHHHHHH
Confidence 445556677 6889999999999888776654
No 24
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=22.81 E-value=43 Score=33.24 Aligned_cols=105 Identities=11% Similarity=0.187 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHH
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSV 226 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi 226 (347)
.|-=.+.-++|++.++++.-++|++.||||.+=. .+-.-+|..+ |+ +..+-++|=++ =-+
T Consensus 17 ~~~~~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG--~~~PK~~~~V----gl------~~gks~lq~~~--------e~i 76 (405)
T 3oc9_A 17 IPVTKEHYYRGLELISQGKTALITPAGGQGSRLG--FEHPKGMFVL----PF------EIPKSIFQMTS--------ERL 76 (405)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEEECCSBCTTTT--CCSBGGGCEE----CS------SSCEEHHHHHH--------HHH
T ss_pred CCccHHHHHHHHHHHhcCceEEEEecCCCccccc--CCCCCccccc----cC------CCCCcHHHHHH--------HHH
Confidence 3333456689999999999999999999997541 1111111111 11 22333333322 111
Q ss_pred HHHHHHh-----C-CCCCcEEEEcCcchhhHHHHHHHH--HhCCCCCCcEEec
Q 018997 227 CRFRELT-----G-TYPHNITVVSYDFKEERFTHLHRS--AIGFPESRFFYSG 271 (347)
Q Consensus 227 ~rF~e~t-----g-~yP~kItVVt~~FK~~Rf~~lH~~--Algfp~~~~~yiG 271 (347)
.++.++. | ..+-...|.|+++..+.-.++..+ -.|++.+++.+.-
T Consensus 77 ~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~ 129 (405)
T 3oc9_A 77 LRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFP 129 (405)
T ss_dssp HHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHHHTGGGGSCTTSEEEEE
T ss_pred HHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHHhCcccCCCccceEEEe
Confidence 2222221 1 234567888999888777666533 4577777777654
No 25
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=22.11 E-value=52 Score=29.59 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHHHHHH-HHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCC-CCCCc--ccccchhhhccccChhHHHHH
Q 018997 149 SFVAHIQEGVE-IVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGW-FGNEE--SVRWRAMTEEHARDSFENLLF 224 (347)
Q Consensus 149 tf~~hI~~ai~-~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gi-f~~~~--~~~~RIltEe~A~DSyENLLF 224 (347)
...++|...++ .+++++...|++|||.|+.. +|+.+.+.++ |..-. -..+|. +..-.-+|+..++-
T Consensus 20 ~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~---------~y~~L~~~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~ 89 (233)
T 3nwp_A 20 QLASKIASQLQEAVDARGKASLVVSGGSTPLK---------LFQLLSMKSIDWSDVYITLADERW-VEADADASNERLVR 89 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEECCSSTTHH---------HHHHHHHCCSCGGGEEEEESEEES-SCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHH---------HHHHHHhcCCChhHeEEEeCeecc-cCCCChHHHHHHHH
Confidence 34455544443 34567899999999998744 4555555544 11100 023566 45555567666553
No 26
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=21.40 E-value=2.2e+02 Score=22.63 Aligned_cols=60 Identities=13% Similarity=-0.002 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCC------CC--HHHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGP------RS--EAQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eagp------iS--EA~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
.+.....|++-+++|+++|+..+.+.|= |... |. +| -|++..+|++++|+ +.+||.++-+
T Consensus 36 ~~~~~~~L~~ia~~l~~~~~~~i~I~Gh-tD~~-G~~~~N~~LS~~RA~aV~~~L~~~Gi------~~~ri~~~g~ 103 (129)
T 2kgw_A 36 IPADYEILNRVADKLKACPDARVTINGY-TDNT-GSEGINIPLSAQRAKIVADYLVARGV------AGDHIATVGL 103 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCTTSCEEEEEC-CCTT-SCHHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEEE-eCCC-CChHHHHHHHHHHHHHHHHHHHHcCC------CHHHEEEEEE
Confidence 4677788899999999999877777654 3322 21 22 36677888888887 6667766433
No 27
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.34 E-value=1e+02 Score=26.99 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred CCCCcEEEEecccccCCCCCC-CC------CCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCC
Q 018997 107 VKLKNLVMVAGHSIYTSSSCG-KV------DKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKD 179 (347)
Q Consensus 107 ~~~~~LIIV~gHaIw~g~~~~-~~------~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~E 179 (347)
...+=-||..|--+..|. .+ ++ ..+.-+-...+..-+.+...+.+.|++++ ++..-++|.|||-|.++
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~----~~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAV----IGGVDLVVSVGGTGVTP 103 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHH----HTTCSEEEEESCCSSST
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEECCCCCCCC
Confidence 444556777777766443 11 00 01111222333334455555555555544 33456899999999877
Q ss_pred CCCCCHH
Q 018997 180 AGPRSEA 186 (347)
Q Consensus 180 agpiSEA 186 (347)
..-..||
T Consensus 104 ~D~t~ea 110 (185)
T 3rfq_A 104 RDVTPES 110 (185)
T ss_dssp TCCHHHH
T ss_pred cccHHHH
Confidence 6344444
No 28
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=20.89 E-value=1.4e+02 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCC-----CCC--HHHHHHHHHHHcCCCCCCcccccchhhhc
Q 018997 148 ASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAG-----PRS--EAQSYWTVAESKGWFGNEESVRWRAMTEE 213 (347)
Q Consensus 148 ~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eag-----piS--EA~Sy~~~a~~~gif~~~~~~~~RIltEe 213 (347)
+.....|++-+++|+++|+..+.+.|= |..... .+| -|++-.+|++++|+ +.+||.++-
T Consensus 67 ~~~~~~L~~la~~l~~~~~~~i~I~Gh-TD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv------~~~ri~~~g 132 (169)
T 3ldt_A 67 EICYPGLNNVIRLLNFYPQSTIYVAGF-TDNVGSRSHKRKLSQAQAETMMTFLWANGI------AAKRLKAEG 132 (169)
T ss_dssp HHHCHHHHHHHHHHTTCTTSCEEEEEE-CTTSCCC--CHHHHHHHHHHHHHHHHHTTC------CTTTEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEeE-eCCCCCHHHHHHHHHHHHHHHHHHHHHcCC------CHHHEEEEE
Confidence 456677888889999999877777663 322110 133 46677889999887 566665543
No 29
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=20.57 E-value=1.6e+02 Score=24.19 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCC------CC--HHHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGP------RS--EAQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eagp------iS--EA~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
.+.....|++-+++|+++|+..+++.|=-.. . |. +| -|++..+|+++.|+ +.+||.++-+
T Consensus 46 ~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~-~-G~~~~N~~LS~~RA~aV~~~L~~~Gv------~~~ri~~~g~ 113 (149)
T 2k1s_A 46 KPAGANTLTGVAMVLKEYPKTAVNVIGYTDS-T-GGHDLNMRLSQQRADSVASALITQGV------DASRIRTQGL 113 (149)
T ss_dssp CHHHHHHHHHHHHHHHHCTTEEEEEEEECCC-T-TCHHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEEEcCC-C-CChHHHHHHHHHHHHHHHHHHHHcCC------CHHHEEEEEE
Confidence 4566778888889999999877777665332 1 21 23 46677888888887 6667766544
No 30
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=20.27 E-value=2.1e+02 Score=22.36 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCC------CC--HHHHHHHHHHHcCCCCCCccc-ccchhhhcc
Q 018997 148 ASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGP------RS--EAQSYWTVAESKGWFGNEESV-RWRAMTEEH 214 (347)
Q Consensus 148 ~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eagp------iS--EA~Sy~~~a~~~gif~~~~~~-~~RIltEe~ 214 (347)
+.....|++-+++|+++|+..+.+.| -|... |. +| -|++-.+|++++|+ + .+||.++-+
T Consensus 30 ~~~~~~L~~~a~~l~~~~~~~i~I~G-htD~~-g~~~~N~~LS~~RA~aV~~~L~~~Gv------~~~~ri~~~g~ 97 (123)
T 3oon_A 30 QKEYKKIDLIAKLLEKFKKNNILIEG-HTEQF-GLEEEMHELSEKRARAIGNYLIKMKV------KDKDQILFKGW 97 (123)
T ss_dssp GGGHHHHHHHHHHHHHSCSCCEEEEE-CCCSC-CCHHHHHHHHHHHHHHHHHHHHHTTS------SCGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCceEEEEE-EeCCC-CChHHHHHHHHHHHHHHHHHHHHcCC------CchHeEEEEEE
Confidence 45567788888999999987777766 44332 21 12 35777888888887 5 667665443
Done!