Query 018997
Match_columns 347
No_of_seqs 186 out of 276
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018997.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018997hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r1ma_ d.79.7.1 (A:) Outer me 57.5 2.3 0.00017 33.5 2.2 60 147-214 24-91 (140)
2 d1vl1a_ c.124.1.1 (A:) 6-phosp 34.7 10 0.00073 31.5 2.7 34 145-178 10-44 (218)
3 d2nzug1 c.93.1.1 (G:58-332) Gl 26.2 1.4E+02 0.01 23.3 9.9 111 152-273 106-218 (275)
4 d1a9xb2 c.23.16.1 (B:1653-1880 23.8 27 0.0019 29.3 3.5 36 159-197 75-110 (228)
5 d2g2ca1 c.57.1.1 (A:1-163) Put 23.7 43 0.0031 26.1 4.7 35 152-186 53-87 (163)
6 d1gpma1 c.26.2.1 (A:208-404) G 23.2 26 0.0019 26.4 3.1 29 149-177 5-33 (197)
7 d2f7wa1 c.57.1.1 (A:2-174) Mog 22.9 44 0.0032 26.3 4.6 37 151-187 50-87 (173)
8 d1o6ca_ c.87.1.3 (A:) UDP-N-ac 22.7 1.4E+02 0.0098 26.0 8.4 82 164-273 88-174 (377)
9 d1oy5a_ c.116.1.4 (A:) tRNA(m1 22.3 13 0.00096 32.3 1.2 41 106-148 101-142 (232)
10 d1uuya_ c.57.1.1 (A:) Plant CN 22.0 48 0.0035 26.2 4.6 38 151-188 54-92 (161)
11 d1jroa4 d.145.1.3 (A:179-345) 21.1 28 0.002 27.9 3.0 22 154-176 8-29 (167)
No 1
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=57.46 E-value=2.3 Score=33.47 Aligned_cols=60 Identities=17% Similarity=0.012 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCC------CCCH--HHHHHHHHHHcCCCCCCcccccchhhhcc
Q 018997 147 AASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAG------PRSE--AQSYWTVAESKGWFGNEESVRWRAMTEEH 214 (347)
Q Consensus 147 ~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~Eag------piSE--A~Sy~~~a~~~gif~~~~~~~~RIltEe~ 214 (347)
.+....-|++-+++|+++|...+++-| -|... | .+|+ |++..+|++++|+ ..+||.++-+
T Consensus 24 ~~~~~~~L~~l~~~l~~~~~~~i~I~G-htD~~-G~~~~N~~LS~~RA~~V~~~L~~~Gi------~~~ri~~~g~ 91 (140)
T d1r1ma_ 24 RAEAQDNLKVLAQRLSRTNIQSVRVEG-HTDFM-GSDKYNQALSERRAYVVANNLVSNGV------PVSRISAVGL 91 (140)
T ss_dssp CHHHHHHHHHHHHHHTTSCEEEEEEEE-ECCSS-SCHHHHHHHHHHHHHHHHHHHHHTTC------CGGGEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhCCCcEEEEEE-eeccc-ccccchhhHHHHHHHHHHHHHHHcCC------CcCeEEEEEE
Confidence 456777889999999999987777765 33221 1 1343 6778888888887 6666665433
No 2
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Probab=34.71 E-value=10 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCchHHHHHHHHHHHHHh-hCCCcEEEEeCCCCCC
Q 018997 145 GQAASFVAHIQEGVEIVA-KDDKALLLFSGGETRK 178 (347)
Q Consensus 145 g~~~tf~~hI~~ai~~l~-~dp~a~LIfSGGqt~~ 178 (347)
+....++++|...++.+. ++....+++|||.|+.
T Consensus 10 ~~~~~~a~~i~~~~~~~~~~~~~~~i~lsGG~tp~ 44 (218)
T d1vl1a_ 10 GYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPL 44 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEECCChhHH
Confidence 445678899988888764 5578889999999863
No 3
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=26.22 E-value=1.4e+02 Score=23.26 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhCC-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHH
Q 018997 152 AHIQEGVEIVAKDD-KALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFR 230 (347)
Q Consensus 152 ~hI~~ai~~l~~dp-~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~ 230 (347)
+=...++++|.+.. .-+.++.|-... .....-....+.+...+.|+- .....+ .....+.+.-.-...++.
T Consensus 106 ~~~~~~~~~l~~~G~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~-----~~~~~~--~~~~~~~~~~~~~~~~~~ 177 (275)
T d2nzug1 106 QAAFDAVQSLIDSGHKNIAFVSGTLEE-PINHAKKVKGYKRALTESGLP-----VRDSYI--VEGDYTYDSGIEAVEKLL 177 (275)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEESCTTS-HHHHTTHHHHHHHHHHHTTCC-----CCGGGE--EECCSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhcccceEEEecCccc-chhhhHHHHHHHHHHHHcCCC-----CCcceE--EeccCCHHHHHHHHHHHH
Confidence 34556677777774 444555543333 211233455666666677751 111111 122334444433333332
Q ss_pred HHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCC-CCCcEEeccC
Q 018997 231 ELTGTYPHNITVVSYDFKEERFTHLHRSAIGFP-ESRFFYSGTP 273 (347)
Q Consensus 231 e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp-~~~~~yiGip 273 (347)
....+....|++++.--..++.. ++..|+. .+.+..+|.+
T Consensus 178 --~~~~~~~ai~~~~d~~A~g~~~~-l~~~g~~ip~di~vig~d 218 (275)
T d2nzug1 178 --EEDEKPTAIFVGTDEMALGVIHG-AQDRGLNVPNDLEIIGFD 218 (275)
T ss_dssp --TSSSCCSEEEESSHHHHHHHHHH-HHTTTCCTTTTCEEEEEE
T ss_pred --hcCCCCeEEEecChHHHHHHHHH-HhhcCCCCCccceeeecc
Confidence 22334577888888776677665 5556653 4579999984
No 4
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.76 E-value=27 Score=29.31 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=22.1
Q ss_pred HHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcC
Q 018997 159 EIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKG 197 (347)
Q Consensus 159 ~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~g 197 (347)
++++.+|++ ||+|||+|..+. ..++.-.-+.+.+.+
T Consensus 75 ~i~~~~pdg-ivlS~GPg~P~~--~~~~~~~~~~~~~~~ 110 (228)
T d1a9xb2 75 DVLKMNPDG-IFLSNGPGDPAP--CDYAITAIQKFLETD 110 (228)
T ss_dssp HHHTTCCSE-EEECCCSBCSTT--CHHHHHHHHHHTTSC
T ss_pred HHHhcCCCE-EEEeCCCCcccc--chhHHHHHHHHHhCC
Confidence 445557766 889999998763 334444444444444
No 5
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=23.75 E-value=43 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHH
Q 018997 152 AHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEA 186 (347)
Q Consensus 152 ~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA 186 (347)
+.|..+++.+.++..-++|.|||-|..+..-..||
T Consensus 53 ~~i~~~~~~a~~~~~DlVittGG~g~~~~D~T~~a 87 (163)
T d2g2ca1 53 DTVVEAIATALKQGARFIITAGGTGIRAKNQTPEA 87 (163)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHHhhhccCCCEEEecCCCCCCCccccccc
Confidence 34566666655555678999999999886333344
No 6
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=23.25 E-value=26 Score=26.36 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 018997 149 SFVAHIQEGVEIVAKDDKALLLFSGGETR 177 (347)
Q Consensus 149 tf~~hI~~ai~~l~~dp~a~LIfSGGqt~ 177 (347)
.|++.+-+.++....+...+|-+|||.-.
T Consensus 5 ~~i~~~~~~ik~~v~~~kvvV~lSGGVDS 33 (197)
T d1gpma1 5 KIIDDAVARIREQVGDDKVILGLSGGVDS 33 (197)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSSHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCHHH
Confidence 45555555555555567777889999854
No 7
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId: 70863]}
Probab=22.85 E-value=44 Score=26.28 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCC-cEEEEeCCCCCCCCCCCCHHH
Q 018997 151 VAHIQEGVEIVAKDDK-ALLLFSGGETRKDAGPRSEAQ 187 (347)
Q Consensus 151 ~~hI~~ai~~l~~dp~-a~LIfSGGqt~~EagpiSEA~ 187 (347)
.++|..++..+....+ -++|.+||-|.....-..||.
T Consensus 50 ~~~I~~~l~~~~~~~~~dlIittGGtG~~~~D~T~ea~ 87 (173)
T d2f7wa1 50 QDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEAT 87 (173)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHhhhhhhcccccEEEEecccccccchhHHHHH
Confidence 5788888887776544 556679999987764444443
No 8
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=22.68 E-value=1.4e+02 Score=25.95 Aligned_cols=82 Identities=9% Similarity=0.044 Sum_probs=50.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChh----HHH-HHHHHHHHHHhCCCCC
Q 018997 164 DDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSF----ENL-LFSVCRFRELTGTYPH 238 (347)
Q Consensus 164 dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSy----ENL-LFSi~rF~e~tg~yP~ 238 (347)
.|+.++|+ |+.-|+.+..-.|..+++ +-..|--=+++-|.+ |+. ...+..+ .
T Consensus 88 kpD~v~v~---------GDr~e~la~a~aa~~~~I------pi~HiegG~~s~~~~~~~~de~~R~~iskl--------s 144 (377)
T d1o6ca_ 88 KPDIVLVH---------GDTTTTFAGSLAAFYHQI------AVGHVEAGLRTGNKYSPFPEELNRQMTGAI--------A 144 (377)
T ss_dssp CCSEEEEE---------TTCHHHHHHHHHHHHTTC------EEEEESCCCCCSCTTTTTTHHHHHHHHHHH--------C
T ss_pred ccceeEee---------ecccccchhhhhhhhccc------eEEEEecccccccccccCchhhhccccccc--------e
Confidence 48877776 246799999999998887 333332233443332 433 4555544 4
Q ss_pred cEEEEcCcchhhHHHHHHHHHhCCCCCCcEEeccC
Q 018997 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTP 273 (347)
Q Consensus 239 kItVVt~~FK~~Rf~~lH~~Algfp~~~~~yiGip 273 (347)
++-+|+++-.++|. ..+|.+.+++..+|.|
T Consensus 145 ~~hf~~t~~~~~~L-----~~~G~~~~~I~~vG~~ 174 (377)
T d1o6ca_ 145 DLHFAPTGQAKDNL-----LKENKKADSIFVTGNT 174 (377)
T ss_dssp SEEEESSHHHHHHH-----HHTTCCGGGEEECCCH
T ss_pred eEEeecchhhhhhh-----hhhccccceEeeccch
Confidence 56777777766665 3447766777777753
No 9
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=22.27 E-value=13 Score=32.32 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecccccCCCCCC-CCCCcccccccccccCCCCch
Q 018997 106 FVKLKNLVMVAGHSIYTSSSCG-KVDKEDSWFLEPYQQHPGQAA 148 (347)
Q Consensus 106 ~~~~~~LIIV~gHaIw~g~~~~-~~~~e~eW~LepfQ~~~g~~~ 148 (347)
+++..|||||||| |.|-+-- ...-+.||-+-+|=..||+.+
T Consensus 101 ls~~~~liliCGR--YEGiDeRv~~~~d~EiSiGDyVLsGGEla 142 (232)
T d1oy5a_ 101 LSKKERIMIICGR--YEGVDERVKKIVDMEISLGDFILSGGEIV 142 (232)
T ss_dssp HHTCSEEEEEECB--TTCBCGGGGGGCCEECCBCSSCCSBSHHH
T ss_pred hhcCCcEEEEecc--cccHhhHhhcCCceEEEeccEEEeCCcch
Confidence 3567899999999 5453310 011234577777766555444
No 10
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.00 E-value=48 Score=26.16 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhC-CCcEEEEeCCCCCCCCCCCCHHHH
Q 018997 151 VAHIQEGVEIVAKD-DKALLLFSGGETRKDAGPRSEAQS 188 (347)
Q Consensus 151 ~~hI~~ai~~l~~d-p~a~LIfSGGqt~~EagpiSEA~S 188 (347)
.+.|.++++.+.++ .--++|.+||-|..+..-..||..
T Consensus 54 ~~~I~~~l~~~~~~~~~D~IittGGtg~g~~D~T~ea~~ 92 (161)
T d1uuya_ 54 VERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATK 92 (161)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHHHhhhcCCceEEEEecCCCCCcccCchhhee
Confidence 35667777766543 445899999999988744455543
No 11
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=21.08 E-value=28 Score=27.90 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCC
Q 018997 154 IQEGVEIVAKDDKALLLFSGGET 176 (347)
Q Consensus 154 I~~ai~~l~~dp~a~LIfSGGqt 176 (347)
+++++++++++|++. +++||..
T Consensus 8 l~e~~~l~~~~p~a~-~vaGGTd 29 (167)
T d1jroa4 8 SDALADWYLAHPEAT-LIAGGTD 29 (167)
T ss_dssp HHHHHHHHHHCTTCE-EESSCTT
T ss_pred HHHHHHHHHHCCCCE-EEEcCCh
Confidence 578999999999987 4588764
Done!