Query 018998
Match_columns 347
No_of_seqs 137 out of 1538
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5.1E-68 1.1E-72 493.9 33.2 305 4-313 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.2E-66 1.1E-70 471.4 32.0 315 3-322 11-335 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 4.4E-61 9.6E-66 454.9 32.8 306 2-313 11-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 4.4E-61 9.6E-66 450.2 31.6 298 6-310 1-316 (317)
5 PRK10625 tas putative aldo-ket 100.0 9E-61 1.9E-65 453.4 33.7 305 4-313 1-340 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 3.3E-60 7.2E-65 425.7 26.6 259 3-315 2-267 (280)
7 PLN02587 L-galactose dehydroge 100.0 5.1E-58 1.1E-62 429.1 30.9 286 6-312 1-300 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 6.7E-57 1.4E-61 416.3 31.0 281 6-310 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 6.6E-56 1.4E-60 410.1 31.4 273 6-313 9-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.6E-56 7.7E-61 411.0 25.8 276 18-311 1-282 (283)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.7E-54 1.2E-58 392.7 27.6 246 14-313 1-253 (267)
12 KOG1577 Aldo/keto reductase fa 100.0 2.5E-54 5.5E-59 387.6 23.9 259 6-315 6-288 (300)
13 PRK14863 bifunctional regulato 100.0 5.8E-54 1.3E-58 396.6 24.7 269 13-310 2-280 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 7.1E-53 1.5E-57 386.8 27.3 261 1-316 1-266 (275)
15 KOG1576 Predicted oxidoreducta 100.0 5.4E-53 1.2E-57 366.0 23.9 286 1-303 19-312 (342)
16 COG4989 Predicted oxidoreducta 100.0 5.7E-53 1.2E-57 363.3 23.2 284 4-313 1-294 (298)
17 COG1453 Predicted oxidoreducta 100.0 8.6E-50 1.9E-54 361.9 24.4 272 4-312 1-285 (391)
18 KOG3023 Glutamate-cysteine lig 97.9 2.6E-05 5.6E-10 68.1 6.2 70 136-206 156-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.3 3.5 7.6E-05 38.5 14.6 154 35-210 134-290 (316)
20 PRK07945 hypothetical protein; 86.8 12 0.00025 35.5 11.9 107 36-156 110-227 (335)
21 cd03316 MR_like Mandelate race 85.9 28 0.0006 33.0 14.3 153 35-206 139-298 (357)
22 PRK08392 hypothetical protein; 85.9 23 0.00051 31.0 13.5 149 37-204 14-179 (215)
23 PRK08609 hypothetical protein; 84.7 11 0.00024 38.4 11.4 150 38-203 350-522 (570)
24 cd03315 MLE_like Muconate lact 84.4 31 0.00067 31.2 14.2 155 35-211 85-243 (265)
25 PRK10550 tRNA-dihydrouridine s 81.3 27 0.00059 32.6 11.8 133 35-179 73-224 (312)
26 cd03174 DRE_TIM_metallolyase D 80.8 16 0.00034 32.9 9.9 106 99-206 15-135 (265)
27 PRK13958 N-(5'-phosphoribosyl) 79.6 5.7 0.00012 34.8 6.2 67 112-180 16-83 (207)
28 cd00739 DHPS DHPS subgroup of 78.4 39 0.00085 30.6 11.5 144 100-265 21-170 (257)
29 COG1748 LYS9 Saccharopine dehy 74.6 13 0.00028 35.8 7.6 81 37-132 79-159 (389)
30 PRK07535 methyltetrahydrofolat 74.2 69 0.0015 29.1 13.0 136 101-265 23-158 (261)
31 PRK05692 hydroxymethylglutaryl 73.7 73 0.0016 29.4 12.1 104 99-205 22-139 (287)
32 cd04740 DHOD_1B_like Dihydroor 73.6 74 0.0016 29.2 13.2 152 35-201 100-287 (296)
33 PRK01222 N-(5'-phosphoribosyl) 72.2 9 0.00019 33.6 5.5 68 112-181 18-86 (210)
34 cd00423 Pterin_binding Pterin 69.9 85 0.0018 28.3 12.9 144 100-265 21-170 (258)
35 cd03323 D-glucarate_dehydratas 69.0 1.2E+02 0.0025 29.5 14.5 149 35-208 168-321 (395)
36 COG0135 TrpF Phosphoribosylant 68.1 25 0.00054 30.8 7.3 83 113-204 18-103 (208)
37 PF00682 HMGL-like: HMGL-like 65.6 55 0.0012 28.9 9.4 162 34-210 11-194 (237)
38 PF05913 DUF871: Bacterial pro 65.2 16 0.00034 34.9 5.9 211 35-294 12-235 (357)
39 COG1140 NarY Nitrate reductase 65.1 2.8 6.1E-05 39.6 0.9 54 148-201 263-317 (513)
40 PRK13796 GTPase YqeH; Provisio 64.8 1.3E+02 0.0029 28.7 12.6 121 34-165 54-177 (365)
41 cd03321 mandelate_racemase Man 64.0 1.3E+02 0.0029 28.4 12.1 150 36-204 142-293 (355)
42 COG0159 TrpA Tryptophan syntha 62.4 1.3E+02 0.0027 27.5 12.1 29 173-201 96-124 (265)
43 TIGR00735 hisF imidazoleglycer 61.5 65 0.0014 29.0 9.1 89 111-202 162-253 (254)
44 cd06543 GH18_PF-ChiA-like PF-C 60.8 1.4E+02 0.0031 27.6 11.7 181 19-211 72-265 (294)
45 PRK10558 alpha-dehydro-beta-de 60.7 76 0.0016 28.7 9.3 68 141-209 9-79 (256)
46 PLN02746 hydroxymethylglutaryl 59.7 1.6E+02 0.0035 28.0 13.0 102 99-206 64-182 (347)
47 cd03322 rpsA The starvation se 59.4 1.6E+02 0.0035 27.9 14.0 147 35-208 126-274 (361)
48 cd02930 DCR_FMN 2,4-dienoyl-Co 59.3 1.6E+02 0.0035 27.9 12.8 23 35-57 128-157 (353)
49 cd00308 enolase_like Enolase-s 59.1 51 0.0011 29.0 7.9 87 121-211 120-208 (229)
50 PF07021 MetW: Methionine bios 58.2 43 0.00094 28.9 6.8 150 41-212 5-172 (193)
51 TIGR01502 B_methylAsp_ase meth 57.9 58 0.0013 31.7 8.5 86 122-208 265-357 (408)
52 PLN00191 enolase 56.9 2.1E+02 0.0045 28.4 13.8 96 100-204 295-393 (457)
53 COG2102 Predicted ATPases of P 56.7 40 0.00087 29.8 6.4 100 134-262 74-177 (223)
54 cd07943 DRE_TIM_HOA 4-hydroxy- 56.1 1.6E+02 0.0034 26.6 15.1 157 34-210 19-198 (263)
55 PF00682 HMGL-like: HMGL-like 55.2 1.5E+02 0.0032 26.1 10.5 97 100-202 11-124 (237)
56 PRK00730 rnpA ribonuclease P; 55.1 65 0.0014 26.3 7.0 63 77-148 46-110 (138)
57 PF07994 NAD_binding_5: Myo-in 55.0 40 0.00088 31.3 6.6 145 102-288 131-283 (295)
58 PLN02363 phosphoribosylanthran 54.9 35 0.00075 31.0 6.0 74 101-180 56-130 (256)
59 cd00740 MeTr MeTr subgroup of 54.1 1.7E+02 0.0037 26.4 12.5 107 100-211 23-131 (252)
60 TIGR01928 menC_lowGC/arch o-su 53.8 1.9E+02 0.0041 27.0 15.1 153 35-211 132-286 (324)
61 smart00642 Aamy Alpha-amylase 53.5 17 0.00037 30.5 3.6 23 188-210 72-94 (166)
62 PRK09613 thiH thiamine biosynt 53.3 1.9E+02 0.0041 28.8 11.3 173 34-208 28-241 (469)
63 PRK04452 acetyl-CoA decarbonyl 52.4 1.4E+02 0.0029 28.2 9.6 94 113-209 85-185 (319)
64 PF14871 GHL6: Hypothetical gl 52.1 24 0.00053 28.5 4.1 25 185-209 43-67 (132)
65 PRK10128 2-keto-3-deoxy-L-rham 51.9 1.6E+02 0.0035 26.9 9.9 66 141-207 8-76 (267)
66 PRK13803 bifunctional phosphor 51.7 63 0.0014 33.3 8.0 69 113-181 19-88 (610)
67 cd07943 DRE_TIM_HOA 4-hydroxy- 51.2 1.5E+02 0.0033 26.7 9.8 105 99-205 18-131 (263)
68 TIGR00216 ispH_lytB (E)-4-hydr 51.0 1.4E+02 0.0031 27.5 9.4 44 248-292 224-273 (280)
69 cd03318 MLE Muconate Lactonizi 50.5 2.3E+02 0.0049 26.9 13.7 84 122-209 215-300 (365)
70 TIGR02370 pyl_corrinoid methyl 50.5 1.4E+02 0.0031 25.7 9.0 145 35-200 10-164 (197)
71 COG0635 HemN Coproporphyrinoge 50.2 1.1E+02 0.0023 30.0 9.0 59 101-161 202-276 (416)
72 PRK02083 imidazole glycerol ph 50.0 1.8E+02 0.0039 26.0 10.0 83 120-202 166-251 (253)
73 TIGR03247 glucar-dehydr glucar 49.5 2.7E+02 0.0058 27.4 13.8 85 123-207 252-337 (441)
74 PRK09427 bifunctional indole-3 49.1 37 0.0008 33.6 5.6 65 113-181 273-338 (454)
75 PF13378 MR_MLE_C: Enolase C-t 49.0 24 0.00052 27.1 3.6 51 157-207 3-54 (111)
76 PRK09061 D-glutamate deacylase 48.5 1.6E+02 0.0034 29.7 10.1 108 38-152 170-278 (509)
77 TIGR03239 GarL 2-dehydro-3-deo 48.0 1.6E+02 0.0035 26.5 9.3 67 142-209 3-72 (249)
78 PRK15072 bifunctional D-altron 47.6 83 0.0018 30.5 7.8 71 138-208 245-317 (404)
79 PF11242 DUF2774: Protein of u 47.6 27 0.00058 24.1 3.1 23 249-271 15-37 (63)
80 PF05690 ThiG: Thiazole biosyn 46.7 1.2E+02 0.0026 27.2 7.8 112 16-150 8-124 (247)
81 PF00809 Pterin_bind: Pterin b 46.6 81 0.0018 27.5 7.0 99 106-208 19-125 (210)
82 COG1151 6Fe-6S prismane cluste 46.5 95 0.0021 31.4 7.9 96 103-203 360-464 (576)
83 COG1168 MalY Bifunctional PLP- 46.2 2.7E+02 0.0057 26.9 10.5 50 160-209 146-201 (388)
84 cd04731 HisF The cyclase subun 45.4 1.9E+02 0.0042 25.5 9.4 150 35-197 82-242 (243)
85 PRK06424 transcription factor; 45.4 78 0.0017 26.0 6.2 83 188-270 22-109 (144)
86 cd07944 DRE_TIM_HOA_like 4-hyd 44.9 2.2E+02 0.0047 25.9 9.7 108 96-204 13-127 (266)
87 PRK01045 ispH 4-hydroxy-3-meth 44.8 2.6E+02 0.0057 26.0 10.5 45 248-293 226-276 (298)
88 TIGR01496 DHPS dihydropteroate 44.6 2.4E+02 0.0052 25.5 13.3 141 100-264 20-167 (257)
89 COG3215 PilZ Tfp pilus assembl 44.2 82 0.0018 24.2 5.5 79 35-115 18-106 (117)
90 PF00356 LacI: Bacterial regul 44.1 47 0.001 21.4 3.7 42 250-297 2-43 (46)
91 cd03314 MAL Methylaspartate am 43.6 1.9E+02 0.004 27.8 9.4 84 124-207 230-320 (369)
92 PRK09856 fructoselysine 3-epim 42.7 1.8E+02 0.0038 26.1 8.9 52 189-260 93-144 (275)
93 PRK07259 dihydroorotate dehydr 42.6 2.7E+02 0.0059 25.5 11.6 154 35-201 102-290 (301)
94 TIGR02026 BchE magnesium-proto 42.4 3.6E+02 0.0078 26.9 12.4 18 189-206 287-304 (497)
95 PRK14017 galactonate dehydrata 41.9 1.1E+02 0.0024 29.4 7.7 69 139-207 217-287 (382)
96 COG3623 SgaU Putative L-xylulo 41.6 37 0.0008 30.3 3.8 77 11-88 65-156 (287)
97 TIGR02026 BchE magnesium-proto 41.3 2.5E+02 0.0054 28.1 10.3 69 130-200 317-392 (497)
98 COG2861 Uncharacterized protei 41.1 2.7E+02 0.0059 25.1 10.0 92 134-259 104-208 (250)
99 PRK09058 coproporphyrinogen II 40.8 2.1E+02 0.0045 28.2 9.5 28 100-128 227-254 (449)
100 PF11020 DUF2610: Domain of un 40.5 66 0.0014 23.5 4.3 28 241-268 48-75 (82)
101 TIGR03822 AblA_like_2 lysine-2 40.4 3.1E+02 0.0068 25.6 12.1 109 101-212 120-240 (321)
102 cd02810 DHOD_DHPD_FMN Dihydroo 40.3 2.9E+02 0.0062 25.1 11.4 130 35-178 109-271 (289)
103 PRK00912 ribonuclease P protei 40.1 2.6E+02 0.0057 24.6 14.2 140 36-204 15-172 (237)
104 TIGR00035 asp_race aspartate r 40.1 1.5E+02 0.0032 26.1 7.7 68 101-169 15-95 (229)
105 PRK07379 coproporphyrinogen II 39.4 1.9E+02 0.0042 28.0 8.9 60 100-161 179-255 (400)
106 PRK06361 hypothetical protein; 39.2 2.5E+02 0.0055 24.1 17.9 185 37-269 10-201 (212)
107 PF05534 HicB: HicB family; I 39.0 61 0.0013 21.4 3.8 24 244-267 26-49 (51)
108 PRK08195 4-hyroxy-2-oxovalerat 39.0 3.4E+02 0.0074 25.6 16.2 24 34-57 22-45 (337)
109 PRK12360 4-hydroxy-3-methylbut 38.7 3.2E+02 0.0069 25.2 10.1 44 248-292 225-274 (281)
110 PRK00164 moaA molybdenum cofac 38.1 3.3E+02 0.0072 25.3 13.2 151 34-204 49-228 (331)
111 PRK06294 coproporphyrinogen II 38.1 2.3E+02 0.0049 27.1 9.1 60 100-161 167-243 (370)
112 COG4130 Predicted sugar epimer 38.1 1.9E+02 0.0041 25.6 7.5 80 160-259 50-136 (272)
113 COG1121 ZnuC ABC-type Mn/Zn tr 37.9 1.8E+02 0.0039 26.4 7.8 65 101-168 113-206 (254)
114 PRK05660 HemN family oxidoredu 37.7 2.3E+02 0.0049 27.2 9.1 60 100-161 171-243 (378)
115 PRK05414 urocanate hydratase; 37.6 98 0.0021 30.9 6.4 115 42-170 117-254 (556)
116 cd07939 DRE_TIM_NifV Streptomy 37.4 3.1E+02 0.0066 24.6 14.9 97 99-203 16-127 (259)
117 KOG2733 Uncharacterized membra 37.3 21 0.00046 33.9 1.8 50 41-92 100-149 (423)
118 COG0218 Predicted GTPase [Gene 36.8 2.7E+02 0.006 24.2 8.4 100 37-148 91-198 (200)
119 TIGR01228 hutU urocanate hydra 36.5 1E+02 0.0022 30.7 6.2 115 42-170 108-245 (545)
120 PRK14461 ribosomal RNA large s 36.5 2.9E+02 0.0063 26.6 9.3 87 123-210 231-352 (371)
121 COG2069 CdhD CO dehydrogenase/ 36.3 2.7E+02 0.0059 25.9 8.5 89 121-211 165-263 (403)
122 PRK08446 coproporphyrinogen II 36.3 3.8E+02 0.0082 25.3 10.5 60 100-161 162-231 (350)
123 COG4464 CapC Capsular polysacc 36.1 3.1E+02 0.0068 24.3 9.8 28 35-62 18-45 (254)
124 cd08590 PI-PLCc_Rv2075c_like C 35.8 1.2E+02 0.0026 27.6 6.5 18 137-154 150-167 (267)
125 PRK12928 lipoyl synthase; Prov 35.7 2.9E+02 0.0064 25.4 9.1 161 34-208 87-280 (290)
126 TIGR03217 4OH_2_O_val_ald 4-hy 35.6 3.8E+02 0.0083 25.2 16.4 24 34-57 21-44 (333)
127 cd01973 Nitrogenase_VFe_beta_l 35.4 4.5E+02 0.0098 26.0 13.8 110 57-178 65-194 (454)
128 COG1801 Uncharacterized conser 35.3 3.5E+02 0.0075 24.6 11.2 111 18-133 4-116 (263)
129 PF04476 DUF556: Protein of un 35.3 3.3E+02 0.0071 24.4 9.7 144 45-202 15-183 (235)
130 PRK02901 O-succinylbenzoate sy 35.3 2.8E+02 0.006 26.1 9.0 71 139-211 173-244 (327)
131 COG0145 HyuA N-methylhydantoin 35.2 3.6E+02 0.0078 28.3 10.4 102 33-136 135-248 (674)
132 TIGR02534 mucon_cyclo muconate 34.6 4.1E+02 0.0088 25.2 14.1 85 122-210 214-300 (368)
133 cd03317 NAAAR N-acylamino acid 33.9 4.1E+02 0.0088 25.0 15.2 148 37-208 139-288 (354)
134 PF10668 Phage_terminase: Phag 33.8 95 0.0021 21.4 4.1 17 249-265 24-40 (60)
135 cd03174 DRE_TIM_metallolyase D 33.8 3.4E+02 0.0073 24.0 13.6 24 35-58 17-40 (265)
136 COG2355 Zn-dependent dipeptida 33.5 2.7E+02 0.0058 26.1 8.4 107 37-158 149-260 (313)
137 PRK10415 tRNA-dihydrouridine s 33.4 4.1E+02 0.0088 24.9 11.5 134 35-179 75-224 (321)
138 PRK10605 N-ethylmaleimide redu 33.4 4.3E+02 0.0094 25.2 14.3 23 34-56 149-178 (362)
139 TIGR00126 deoC deoxyribose-pho 33.3 2.6E+02 0.0056 24.5 7.9 72 35-120 130-205 (211)
140 PRK05283 deoxyribose-phosphate 32.5 3.2E+02 0.007 24.8 8.6 78 35-122 144-227 (257)
141 TIGR00381 cdhD CO dehydrogenas 32.2 4.8E+02 0.01 25.3 10.3 105 103-212 128-253 (389)
142 TIGR01927 menC_gamma/gm+ o-suc 32.2 3E+02 0.0064 25.5 8.7 73 140-212 196-270 (307)
143 PF07476 MAAL_C: Methylasparta 32.1 1.1E+02 0.0023 27.2 5.2 101 101-204 87-194 (248)
144 COG2185 Sbm Methylmalonyl-CoA 32.1 2.9E+02 0.0062 22.7 8.7 58 153-214 19-78 (143)
145 TIGR00048 radical SAM enzyme, 31.6 1.8E+02 0.0039 27.7 7.2 88 123-210 218-333 (355)
146 PF04481 DUF561: Protein of un 31.4 3.8E+02 0.0081 23.8 9.8 104 35-150 25-146 (242)
147 PRK05406 LamB/YcsF family prot 31.0 1.6E+02 0.0035 26.5 6.3 80 20-116 13-95 (246)
148 PRK05458 guanosine 5'-monophos 31.0 2E+02 0.0044 27.1 7.3 125 71-204 15-145 (326)
149 cd08556 GDPD Glycerophosphodie 30.9 3.1E+02 0.0066 22.7 8.7 22 36-57 12-33 (189)
150 PF00697 PRAI: N-(5'phosphorib 30.8 50 0.0011 28.5 3.0 68 111-182 13-81 (197)
151 PF01207 Dus: Dihydrouridine s 30.7 1.6E+02 0.0035 27.4 6.6 133 35-178 64-212 (309)
152 cd07948 DRE_TIM_HCS Saccharomy 30.4 4.1E+02 0.009 24.0 13.1 106 34-157 19-133 (262)
153 PRK00077 eno enolase; Provisio 30.4 3.6E+02 0.0079 26.4 9.3 96 100-204 261-361 (425)
154 PRK07531 bifunctional 3-hydrox 30.4 3.9E+02 0.0084 26.7 9.7 124 120-269 80-218 (495)
155 PF01175 Urocanase: Urocanase; 30.3 1.3E+02 0.0029 30.0 6.0 115 42-170 107-244 (546)
156 PF11372 DUF3173: Domain of un 29.9 50 0.0011 22.7 2.2 33 35-70 15-56 (59)
157 cd01297 D-aminoacylase D-amino 29.9 5.1E+02 0.011 25.0 11.3 103 37-150 167-275 (415)
158 cd02801 DUS_like_FMN Dihydrour 29.8 3.7E+02 0.008 23.3 9.8 132 35-178 65-212 (231)
159 PRK12569 hypothetical protein; 29.6 1.9E+02 0.0041 26.1 6.5 81 20-117 14-99 (245)
160 PRK15440 L-rhamnonate dehydrat 29.4 1.7E+02 0.0036 28.4 6.7 69 137-205 246-318 (394)
161 COG1751 Uncharacterized conser 29.3 2E+02 0.0044 23.9 6.0 74 35-119 12-85 (186)
162 PF01118 Semialdhyde_dh: Semia 29.2 78 0.0017 24.7 3.7 28 35-62 75-102 (121)
163 PRK13347 coproporphyrinogen II 28.9 2.8E+02 0.006 27.3 8.3 60 100-161 216-291 (453)
164 cd00248 Mth938-like Mth938-lik 28.7 1.4E+02 0.0029 23.1 4.9 53 156-208 36-88 (109)
165 PRK10200 putative racemase; Pr 28.7 2.2E+02 0.0048 25.2 6.9 63 101-164 15-89 (230)
166 COG5310 Homospermidine synthas 28.6 5.2E+02 0.011 24.6 9.8 132 5-155 5-153 (481)
167 TIGR00221 nagA N-acetylglucosa 28.5 4.8E+02 0.01 25.1 9.6 126 35-170 75-211 (380)
168 PRK12330 oxaloacetate decarbox 28.2 5.8E+02 0.013 25.7 10.3 23 35-57 25-47 (499)
169 COG0502 BioB Biotin synthase a 28.1 4.4E+02 0.0095 25.0 8.9 130 35-185 85-233 (335)
170 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.0 4.6E+02 0.01 23.8 15.5 166 34-210 18-205 (275)
171 TIGR03822 AblA_like_2 lysine-2 27.9 5E+02 0.011 24.2 11.7 102 35-150 120-228 (321)
172 KOG0059 Lipid exporter ABCA1 a 27.8 3.1E+02 0.0066 29.8 8.9 71 100-172 670-769 (885)
173 PRK13352 thiamine biosynthesis 27.7 1.5E+02 0.0033 28.8 5.8 120 137-292 122-246 (431)
174 CHL00076 chlB photochlorophyll 27.6 6.4E+02 0.014 25.4 12.0 133 65-209 69-248 (513)
175 PRK00087 4-hydroxy-3-methylbut 27.6 4.9E+02 0.011 27.1 10.1 44 248-292 222-271 (647)
176 PRK03031 rnpA ribonuclease P; 27.4 3E+02 0.0065 21.7 6.8 64 77-148 47-114 (122)
177 TIGR00676 fadh2 5,10-methylene 27.4 4.7E+02 0.01 23.7 14.4 150 37-202 15-186 (272)
178 PHA02128 hypothetical protein 27.3 2E+02 0.0043 22.2 5.3 70 136-205 60-150 (151)
179 cd00945 Aldolase_Class_I Class 27.0 3.7E+02 0.0079 22.3 9.3 98 35-148 11-109 (201)
180 COG0761 lytB 4-Hydroxy-3-methy 27.0 5.1E+02 0.011 24.0 10.7 70 188-293 203-278 (294)
181 cd04728 ThiG Thiazole synthase 27.0 4.7E+02 0.01 23.6 13.1 104 99-204 72-180 (248)
182 PRK02714 O-succinylbenzoate sy 26.9 5.2E+02 0.011 24.0 13.8 85 121-211 192-277 (320)
183 PRK11170 nagA N-acetylglucosam 26.9 5.4E+02 0.012 24.7 9.7 31 140-170 179-209 (382)
184 TIGR02311 HpaI 2,4-dihydroxyhe 26.9 4.6E+02 0.01 23.5 10.3 64 142-206 3-69 (249)
185 PF01904 DUF72: Protein of unk 26.9 4.4E+02 0.0096 23.2 11.0 129 51-205 19-148 (230)
186 PF05378 Hydant_A_N: Hydantoin 26.6 96 0.0021 26.3 4.0 22 135-157 133-154 (176)
187 KOG0259 Tyrosine aminotransfer 26.5 6.1E+02 0.013 24.7 11.1 163 15-210 62-243 (447)
188 cd01821 Rhamnogalacturan_acety 26.3 3.9E+02 0.0084 22.4 8.1 53 189-261 97-149 (198)
189 PF01402 RHH_1: Ribbon-helix-h 26.3 1.5E+02 0.0033 17.7 4.2 24 244-267 8-31 (39)
190 PLN02522 ATP citrate (pro-S)-l 26.2 1.5E+02 0.0032 30.6 5.8 83 63-153 234-325 (608)
191 COG2256 MGS1 ATPase related to 26.1 2.8E+02 0.0062 27.0 7.3 101 41-159 37-141 (436)
192 cd08583 PI-PLCc_GDPD_SF_unchar 25.5 4.6E+02 0.01 23.0 9.1 20 36-55 14-33 (237)
193 PRK08208 coproporphyrinogen II 25.4 4.2E+02 0.0091 25.9 8.8 61 99-161 204-275 (430)
194 TIGR00742 yjbN tRNA dihydrouri 25.4 5.6E+02 0.012 23.9 11.7 133 35-178 65-222 (318)
195 cd03324 rTSbeta_L-fuconate_deh 25.1 6.5E+02 0.014 24.5 13.7 81 122-206 267-352 (415)
196 PRK12677 xylose isomerase; Pro 25.1 3.9E+02 0.0084 25.8 8.3 40 18-57 7-51 (384)
197 cd08620 PI-PLCXDc_like_1 Catal 25.1 3.3E+02 0.0072 25.0 7.5 18 43-60 36-53 (281)
198 TIGR02660 nifV_homocitr homoci 25.0 6E+02 0.013 24.2 15.9 98 98-203 18-130 (365)
199 PRK09249 coproporphyrinogen II 25.0 2.4E+02 0.0053 27.7 7.1 15 200-214 317-331 (453)
200 PF07027 DUF1318: Protein of u 24.9 1.5E+02 0.0033 22.4 4.4 30 241-270 44-73 (95)
201 TIGR03070 couple_hipB transcri 24.7 94 0.002 20.0 3.0 21 248-268 5-25 (58)
202 cd02070 corrinoid_protein_B12- 24.7 4.5E+02 0.0097 22.5 10.6 145 35-200 9-162 (201)
203 PRK05588 histidinol-phosphatas 24.6 5E+02 0.011 23.1 16.3 80 36-130 15-103 (255)
204 PF00762 Ferrochelatase: Ferro 24.5 4.8E+02 0.01 24.4 8.6 92 101-210 205-299 (316)
205 PRK09485 mmuM homocysteine met 24.5 5.7E+02 0.012 23.6 13.8 166 35-205 44-246 (304)
206 TIGR01060 eno phosphopyruvate 24.4 5.9E+02 0.013 24.9 9.6 80 121-204 278-362 (425)
207 cd03329 MR_like_4 Mandelate ra 24.4 6.1E+02 0.013 24.0 14.6 152 35-206 143-299 (368)
208 PRK04390 rnpA ribonuclease P; 24.4 3.5E+02 0.0076 21.2 7.1 64 77-148 44-110 (120)
209 PRK00208 thiG thiazole synthas 24.3 5.4E+02 0.012 23.3 13.9 104 99-204 72-180 (250)
210 PRK09856 fructoselysine 3-epim 24.0 3.5E+02 0.0076 24.1 7.5 52 160-211 14-72 (275)
211 COG3172 NadR Predicted ATPase/ 24.0 2.9E+02 0.0063 23.5 6.1 97 48-149 78-185 (187)
212 cd07938 DRE_TIM_HMGL 3-hydroxy 23.9 5.6E+02 0.012 23.3 11.1 99 100-204 17-132 (274)
213 cd03327 MR_like_2 Mandelate ra 23.8 6.1E+02 0.013 23.8 14.9 81 122-206 198-280 (341)
214 KOG2264 Exostosin EXT1L [Signa 23.8 1.9E+02 0.0042 29.3 5.8 59 63-136 632-692 (907)
215 cd00408 DHDPS-like Dihydrodipi 23.7 5.4E+02 0.012 23.1 14.6 101 33-148 14-121 (281)
216 PRK05628 coproporphyrinogen II 23.6 5.6E+02 0.012 24.4 9.1 28 99-127 171-198 (375)
217 TIGR03821 AblA_like_1 lysine-2 23.5 6.1E+02 0.013 23.7 11.2 90 122-212 144-246 (321)
218 PF03102 NeuB: NeuB family; I 23.5 4.3E+02 0.0093 23.7 7.7 109 34-162 53-183 (241)
219 COG4226 HicB Predicted nucleas 23.4 2.8E+02 0.0061 21.6 5.5 53 189-269 52-104 (111)
220 PF04748 Polysacc_deac_2: Dive 23.3 3.5E+02 0.0077 23.6 7.1 51 35-88 72-128 (213)
221 PRK08195 4-hyroxy-2-oxovalerat 23.1 6.4E+02 0.014 23.8 11.9 103 98-205 20-134 (337)
222 PRK09413 IS2 repressor TnpA; R 23.0 1.1E+02 0.0024 24.1 3.4 42 34-77 13-54 (121)
223 PF01476 LysM: LysM domain; I 22.9 84 0.0018 19.2 2.3 18 248-265 7-24 (44)
224 cd08570 GDPD_YPL206cp_fungi Gl 22.9 5.2E+02 0.011 22.6 8.8 20 36-55 12-31 (234)
225 cd01075 NAD_bind_Leu_Phe_Val_D 22.5 1.5E+02 0.0033 25.5 4.6 74 190-272 123-197 (200)
226 PF07287 DUF1446: Protein of u 22.3 2.4E+02 0.0052 27.0 6.2 18 188-205 60-77 (362)
227 cd03770 SR_TndX_transposase Se 22.3 1.5E+02 0.0033 23.8 4.3 51 106-156 54-105 (140)
228 PLN02389 biotin synthase 22.2 7.1E+02 0.015 24.0 10.4 102 34-150 116-227 (379)
229 cd08557 PI-PLCc_bacteria_like 22.1 2E+02 0.0044 25.6 5.5 19 42-60 42-60 (271)
230 TIGR02631 xylA_Arthro xylose i 22.1 7.2E+02 0.016 23.9 9.5 59 17-75 7-79 (382)
231 PF13407 Peripla_BP_4: Peripla 22.0 4.2E+02 0.0092 22.9 7.6 49 103-157 14-62 (257)
232 cd07948 DRE_TIM_HCS Saccharomy 21.9 6E+02 0.013 23.0 10.2 100 99-206 18-132 (262)
233 PRK08599 coproporphyrinogen II 21.8 5.8E+02 0.012 24.3 8.9 59 100-160 164-239 (377)
234 PF08418 Pol_alpha_B_N: DNA po 21.7 92 0.002 27.9 3.2 50 243-293 8-60 (253)
235 PTZ00081 enolase; Provisional 21.7 6.7E+02 0.015 24.7 9.3 96 100-204 281-381 (439)
236 COG1751 Uncharacterized conser 21.7 4.7E+02 0.01 21.8 6.8 86 125-211 3-95 (186)
237 PF13167 GTP-bdg_N: GTP-bindin 21.6 63 0.0014 24.5 1.7 68 243-312 6-80 (95)
238 PRK14459 ribosomal RNA large s 21.6 6.3E+02 0.014 24.3 8.9 88 123-210 241-359 (373)
239 PRK08776 cystathionine gamma-s 21.6 7.4E+02 0.016 23.9 10.7 86 122-211 100-187 (405)
240 TIGR03849 arch_ComA phosphosul 21.5 2.5E+02 0.0054 25.2 5.7 97 106-204 11-118 (237)
241 PF02679 ComA: (2R)-phospho-3- 21.5 78 0.0017 28.5 2.5 98 106-204 24-131 (244)
242 TIGR02082 metH 5-methyltetrahy 21.5 1.2E+03 0.026 26.3 13.8 93 115-211 379-476 (1178)
243 COG2159 Predicted metal-depend 21.4 5.3E+02 0.012 23.7 8.2 96 113-208 55-166 (293)
244 PRK00507 deoxyribose-phosphate 21.4 3.3E+02 0.0071 24.1 6.5 75 35-120 134-209 (221)
245 PRK09490 metH B12-dependent me 21.2 1.2E+03 0.027 26.4 12.8 119 115-261 395-519 (1229)
246 PRK08255 salicylyl-CoA 5-hydro 21.0 1E+03 0.022 25.3 13.7 157 34-201 541-737 (765)
247 COG2987 HutU Urocanate hydrata 20.9 2.4E+02 0.0051 27.9 5.7 58 112-176 203-261 (561)
248 cd00405 PRAI Phosphoribosylant 20.9 2.2E+02 0.0049 24.3 5.3 67 113-181 15-82 (203)
249 PF00388 PI-PLC-X: Phosphatidy 20.8 66 0.0014 26.1 1.8 18 42-59 31-48 (146)
250 TIGR02090 LEU1_arch isopropylm 20.8 7.3E+02 0.016 23.6 12.0 25 34-58 19-43 (363)
251 COG0042 tRNA-dihydrouridine sy 20.7 6.6E+02 0.014 23.5 8.7 132 35-178 77-227 (323)
252 PF06819 Arc_PepC: Archaeal Pe 20.7 2.1E+02 0.0045 22.4 4.4 51 102-152 55-105 (110)
253 COG4555 NatA ABC-type Na+ tran 20.6 4.7E+02 0.01 23.3 6.9 70 99-170 104-202 (245)
254 PF05368 NmrA: NmrA-like famil 20.6 3.6E+02 0.0077 23.3 6.7 85 119-211 21-106 (233)
255 cd03325 D-galactonate_dehydrat 20.6 7.2E+02 0.016 23.4 15.6 153 35-206 123-285 (352)
256 PRK14466 ribosomal RNA large s 20.5 7.2E+02 0.016 23.7 8.9 88 123-210 210-325 (345)
257 TIGR01278 DPOR_BchB light-inde 20.5 8.3E+02 0.018 24.5 10.0 100 65-177 69-193 (511)
258 PF09989 DUF2229: CoA enzyme a 20.4 2.3E+02 0.005 25.0 5.3 33 173-205 186-218 (221)
259 cd02933 OYE_like_FMN Old yello 20.4 7.3E+02 0.016 23.4 14.1 37 34-75 142-185 (338)
260 COG1104 NifS Cysteine sulfinat 20.3 3.3E+02 0.0071 26.4 6.6 67 138-204 104-176 (386)
261 TIGR03471 HpnJ hopanoid biosyn 20.2 7.5E+02 0.016 24.4 9.5 155 35-200 228-392 (472)
262 PF13518 HTH_28: Helix-turn-he 20.2 1.3E+02 0.0028 19.1 2.8 21 249-270 14-34 (52)
263 PF14502 HTH_41: Helix-turn-he 20.1 96 0.0021 20.3 2.0 28 249-276 8-37 (48)
264 PRK01313 rnpA ribonuclease P; 20.1 4.6E+02 0.01 21.0 6.9 62 77-147 47-113 (129)
265 PF13467 RHH_4: Ribbon-helix-h 20.0 1.5E+02 0.0033 20.9 3.2 29 244-272 20-48 (67)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.1e-68 Score=493.89 Aligned_cols=305 Identities=42% Similarity=0.675 Sum_probs=274.9
Q ss_pred CcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCC-CCCeE
Q 018998 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAE 82 (347)
Q Consensus 4 m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~-R~~~~ 82 (347)
|+||+||++|++||+||||||.+|+.+. ..+.+++.++|++|+++||||||||+.||.|.||++||++|++.. |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 8999999999999999999999986422 225567888999999999999999999999999999999999865 89999
Q ss_pred EEeecCccccC-CCC-CCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcch
Q 018998 83 LATKFGIGIVD-GKY-GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEAS 160 (347)
Q Consensus 83 i~tK~~~~~~~-~~~-~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 160 (347)
|+||++....+ +.. ..+.++++|+++|+.||+|||||||||||+|+||...+.++++++|.+|+++||||++|+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999876543 222 2678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCcccccc-CCCCCCC
Q 018998 161 ASTIRRAHAV-HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKH-LPRFQPG 238 (347)
Q Consensus 161 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~-~p~~~~~ 238 (347)
++++.++.+. .+++++|.+||+++|+.+.+++++|+++||++++|+||++|+|+ |++... +.+.+.. .+.+...
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC---cchhhccccccchhh
Confidence 9999999998 59999999999999987778999999999999999999999999 775443 2233322 2566666
Q ss_pred chhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 018998 239 NLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 313 (347)
Q Consensus 239 ~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~~ 313 (347)
..+......+.+.++|+++|+|++|+||+|++++|.+++||+|+++++||++|+++++..|++++++.|++....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 788889999999999999999999999999999999999999999999999999999999999999999988754
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.2e-66 Score=471.41 Aligned_cols=315 Identities=47% Similarity=0.745 Sum_probs=279.8
Q ss_pred CCcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc--CCCCC
Q 018998 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRER 80 (347)
Q Consensus 3 ~m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~--~~R~~ 80 (347)
.|+++.||++|++||++|||||.+.. |+...++++++++|+.|+++|+||||||++||+|.||.++|++|++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 58899999999999999999975432 4545789999999999999999999999999999999999999998 48999
Q ss_pred eEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcch
Q 018998 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEAS 160 (347)
Q Consensus 81 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 160 (347)
++|+||++... .+......+...+...++.|+++||++|||+||+||+|+..++++++++|.+++++||||+||+|+++
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999998765 22224567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--eeEEeeeccccccchh-hchHHHHHHhCCeEEEcccCCCCcCCCCC-CCCCCCCCccccccC----
Q 018998 161 ASTIRRAHAVHP--ITAVQLEWSLWTRDVE-EDIIPTCRELGIGIVAYSPLGRGFFSSGS-KLAESLSEGDYRKHL---- 232 (347)
Q Consensus 161 ~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~via~~pl~~G~l~~g~-~~~~~~~~~~~~~~~---- 232 (347)
++++.++....+ +.++|++||++.|..+ .++++.|++.||++++|+||++|+|+ |+ ...++.+..+.+...
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt-gk~~~~e~~~~~~~~~~~~~~~ 247 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT-GKYKLGEDSRNGDKRFQFLGLS 247 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec-cCcccccccccccccccccccc
Confidence 999999998876 9999999999999844 56999999999999999999999999 77 444555555543322
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 018998 233 PRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIAS 312 (347)
Q Consensus 233 p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~ 312 (347)
|++... +.++...+++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.+.||++++.+|+++.+
T Consensus 248 ~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~ 325 (336)
T KOG1575|consen 248 PQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIID 325 (336)
T ss_pred cccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhc
Confidence 222222 678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 018998 313 ADNVKGDRYP 322 (347)
Q Consensus 313 ~~~~~~~~~~ 322 (347)
.....++++.
T Consensus 326 ~~~~~~~~~~ 335 (336)
T KOG1575|consen 326 KILGFGPRSI 335 (336)
T ss_pred cccCcCCCCC
Confidence 8877776664
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=4.4e-61 Score=454.92 Aligned_cols=306 Identities=28% Similarity=0.525 Sum_probs=255.2
Q ss_pred CCCcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCC--CchHHHHHHHhhcC---
Q 018998 2 ATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP--HTNEILLGKAFKGG--- 76 (347)
Q Consensus 2 ~~m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--G~sE~~lG~aL~~~--- 76 (347)
+.|+||+||+||++||+||||||.. +|...+.+++.++|+.|+++|||+||||+.||. |.+|+.||++|++.
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 5799999999999999999999972 233335678899999999999999999999995 89999999999863
Q ss_pred CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEec
Q 018998 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGL 156 (347)
Q Consensus 77 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv 156 (347)
.|++++|+||++....++....+.+++.+++++++||++||+||||+|++|+|+...+.++++++|++|+++||||+|||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGv 167 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGI 167 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEe
Confidence 69999999999753111112234679999999999999999999999999999988889999999999999999999999
Q ss_pred CcchHHHHHHHhcC-----CCeeEEeeeccccccchh-hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccc
Q 018998 157 SEASASTIRRAHAV-----HPITAVQLEWSLWTRDVE-EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRK 230 (347)
Q Consensus 157 S~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~ 230 (347)
||+++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+ +++... .|. +.+.
T Consensus 168 Sn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~~-~~~-~~~~ 244 (346)
T PRK09912 168 SSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLNG-IPQ-DSRM 244 (346)
T ss_pred cCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCCC-CCC-Cccc
Confidence 99999988765432 367899999999998754 47999999999999999999999998 664222 111 1100
Q ss_pred -----cCCCCCCCc-hhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhc-CCCCCHHH
Q 018998 231 -----HLPRFQPGN-LEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEAL-SVKITPEE 303 (347)
Q Consensus 231 -----~~p~~~~~~-~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~-~~~Lt~e~ 303 (347)
..+.+.+.. .+......+.+.++|+++|+|++|+||+|++++|.++++|+|+++++||++|++++ .++|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~ 324 (346)
T PRK09912 245 HREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEE 324 (346)
T ss_pred cccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHH
Confidence 001111111 13445677899999999999999999999999999999999999999999999998 48999999
Q ss_pred HHHHHHHhcc
Q 018998 304 MAELEAIASA 313 (347)
Q Consensus 304 ~~~i~~l~~~ 313 (347)
++.|+++.+.
T Consensus 325 ~~~l~~~~~~ 334 (346)
T PRK09912 325 LAQIDQHIAD 334 (346)
T ss_pred HHHHHHhhCc
Confidence 9999999865
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.4e-61 Score=450.24 Aligned_cols=298 Identities=27% Similarity=0.417 Sum_probs=250.4
Q ss_pred ceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcC--CCCCeEE
Q 018998 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGG--FRERAEL 83 (347)
Q Consensus 6 ~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~--~R~~~~i 83 (347)
||+||++|++||+||||||++ +|...+++++.++|+.|+++|||+||||+.||.|.||++||++|+.. +|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 589999999999999999974 23334778999999999999999999999999999999999999853 6999999
Q ss_pred EeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHH
Q 018998 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASAST 163 (347)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 163 (347)
+||++.... .....+.+++.+++++++||++||+||||+|++|+|+...+.+++|++|++|+++||||+|||||++.++
T Consensus 78 aTK~~~~~~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~ 156 (317)
T TIGR01293 78 TTKIFWGGK-AETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSME 156 (317)
T ss_pred EeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 999863211 0112356899999999999999999999999999999888899999999999999999999999999988
Q ss_pred HHHHhcC------CCeeEEeeeccccccch-hhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCC-
Q 018998 164 IRRAHAV------HPITAVQLEWSLWTRDV-EEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRF- 235 (347)
Q Consensus 164 l~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~- 235 (347)
++++... .+++++|++||+++++. +.+++++|+++||++++|+||++|+|+ |++... .+. +.+...+.+
T Consensus 157 l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~~-~~~-~~~~~~~~~~ 233 (317)
T TIGR01293 157 IMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDSG-IPP-YSRATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCCC-CCC-cccccccccc
Confidence 8775432 46789999999999874 668999999999999999999999999 664322 222 211111111
Q ss_pred --C----CCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCC--CCCHHHHHHH
Q 018998 236 --Q----PGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV--KITPEEMAEL 307 (347)
Q Consensus 236 --~----~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~--~Lt~e~~~~i 307 (347)
. ...........+.+.++|+++|+|++|+||+|++++|+++++|+|+++++|+++|++++++ +||+++++.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 0 1112234667788999999999999999999999999999999999999999999999987 9999999999
Q ss_pred HHH
Q 018998 308 EAI 310 (347)
Q Consensus 308 ~~l 310 (347)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 876
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9e-61 Score=453.36 Aligned_cols=305 Identities=29% Similarity=0.405 Sum_probs=253.7
Q ss_pred CcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcC-------CCchHHHHHHHhhcC
Q 018998 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYG-------PHTNEILLGKAFKGG 76 (347)
Q Consensus 4 m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~G~sE~~lG~aL~~~ 76 (347)
|+||+||+||++||.||||||++|+ ..+++++.++|+.|+++||||||||+.|| .|.||+.+|++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 8899999999999999999999864 23678999999999999999999999998 488999999999853
Q ss_pred -CCCCeEEEeecCccccC-CC---CCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCC-----------------CCC
Q 018998 77 -FRERAELATKFGIGIVD-GK---YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----------------QTP 134 (347)
Q Consensus 77 -~R~~~~i~tK~~~~~~~-~~---~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~-----------------~~~ 134 (347)
.|++++|+||++..... +. ...+.+++.+++++++||++||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 69999999998632210 00 112468999999999999999999999999999965 235
Q ss_pred HHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhc------CCCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccC
Q 018998 135 IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA------VHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 135 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl 208 (347)
++++|++|++|+++||||+|||||++.++++++.. ...++++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 78999999999999999999999999988876543 135789999999999877678999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHH
Q 018998 209 GRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANL 288 (347)
Q Consensus 209 ~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l 288 (347)
++|+|+ |++.....+.+......+.|.....+......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||
T Consensus 237 ~~G~Lt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLT-GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeecc-CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 999998 6643222221110000111111112345667889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhcc
Q 018998 289 NENIEALSVKITPEEMAELEAIASA 313 (347)
Q Consensus 289 ~~nl~a~~~~Lt~e~~~~i~~l~~~ 313 (347)
++|+++++++|++++++.|+++.+.
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999753
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.3e-60 Score=425.73 Aligned_cols=259 Identities=32% Similarity=0.478 Sum_probs=232.8
Q ss_pred CCcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc--CCCCC
Q 018998 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRER 80 (347)
Q Consensus 3 ~m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~--~~R~~ 80 (347)
+|.+..| ++|.+||.||||||+++. .+.+.+.+.+|++.|+|+||||..|| +|+.+|+++++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 4666788 678889999999999842 23389999999999999999999999 89999999998 48999
Q ss_pred eEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCc
Q 018998 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ--TPIEVTIGELKKLVEEGKIKYIGLSE 158 (347)
Q Consensus 81 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~--~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (347)
+||+||++.. +.+++.+.+++++||++||+||||+|++|||.+. ..+.++|++|++++++|+||+|||||
T Consensus 71 lFittKvw~~--------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 71 LFITTKVWPS--------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred eEEEeecCCc--------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999876 5578899999999999999999999999999763 33789999999999999999999999
Q ss_pred chHHHHHHHhcC--CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCc-CCCCCCCCCCCCCccccccCCCC
Q 018998 159 ASASTIRRAHAV--HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGF-FSSGSKLAESLSEGDYRKHLPRF 235 (347)
Q Consensus 159 ~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~-l~~g~~~~~~~~~~~~~~~~p~~ 235 (347)
|+.++|+++++. ..++++|++||++.++. +++++|+++||.+++|+||+.|. +. ..
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~----------------~~--- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLL----------------DN--- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccc----------------cC---
Confidence 999999998876 45899999999999965 49999999999999999999653 32 01
Q ss_pred CCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCC
Q 018998 236 QPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADN 315 (347)
Q Consensus 236 ~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~~~~ 315 (347)
..+.+||++||.|++|++|+|+++++. ++||.+++++|+++|++++++.||+|||+.|+++.....
T Consensus 202 ------------~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 202 ------------PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred ------------hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 279999999999999999999999995 999999999999999999999999999999999987654
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5.1e-58 Score=429.11 Aligned_cols=286 Identities=30% Similarity=0.451 Sum_probs=244.7
Q ss_pred ceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc--CCCCCeEE
Q 018998 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (347)
Q Consensus 6 ~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~--~~R~~~~i 83 (347)
||+||+||++||.||||||++|+.|+. .+.+++.++|+.|+++|||+||||+.||.|.+|+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999876664 478899999999999999999999999999999999999987 36999999
Q ss_pred EeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC---CCHHHHHHHHHHHHHcCCcceEecCcch
Q 018998 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ---TPIEVTIGELKKLVEEGKIKYIGLSEAS 160 (347)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 160 (347)
+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. ..++++|++|++|+++||||+|||||++
T Consensus 80 ~TK~~~~~~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGRYGE----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred EeccccCCC----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 999974321 135689999999999999999999999999999743 3457899999999999999999999999
Q ss_pred HHHHHHHhcC---C--CeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCC
Q 018998 161 ASTIRRAHAV---H--PITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRF 235 (347)
Q Consensus 161 ~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~ 235 (347)
+++++.+... . .+..+|++||+.++.. .+++++|+++||++++|+||++|+|+ ++..+ .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~~~-------------~~ 220 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENGPP-------------EW 220 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCCCC-------------CC
Confidence 9887766542 2 2344578888877643 48999999999999999999999998 44211 01
Q ss_pred CCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcC----CCCCHHHHHHHHHHh
Q 018998 236 QPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS----VKITPEEMAELEAIA 311 (347)
Q Consensus 236 ~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~----~~Lt~e~~~~i~~l~ 311 (347)
.+ ..+......+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++ .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 10 1245567788899999999999999999999999999999999999999999999975 379999999999988
Q ss_pred c
Q 018998 312 S 312 (347)
Q Consensus 312 ~ 312 (347)
.
T Consensus 300 ~ 300 (314)
T PLN02587 300 A 300 (314)
T ss_pred c
Confidence 5
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6.7e-57 Score=416.29 Aligned_cols=281 Identities=42% Similarity=0.669 Sum_probs=250.0
Q ss_pred ceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCC-CCCeEEE
Q 018998 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELA 84 (347)
Q Consensus 6 ~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~-R~~~~i~ 84 (347)
+|+||+||++||+|||||+.++..| .+.+++.++++.|+++|||+||||+.||.|.+|+.+|++|+... |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5889999999999999999987654 47789999999999999999999999999999999999999865 9999999
Q ss_pred eecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCcchHHH
Q 018998 85 TKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTIGELKKLVEEGKIKYIGLSEASAST 163 (347)
Q Consensus 85 tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 163 (347)
||++..... ..+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+|||||++++.
T Consensus 78 tK~~~~~~~---~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 154 (285)
T cd06660 78 TKVGPRPGD---GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQ 154 (285)
T ss_pred eeecCCCCC---CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHH
Confidence 999865321 14578999999999999999999999999999988766 78999999999999999999999999999
Q ss_pred HHHHhcC--CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchh
Q 018998 164 IRRAHAV--HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLE 241 (347)
Q Consensus 164 l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~ 241 (347)
+.++... .+++++|++||++++..+.+++++|+++||++++|+||++|.++ ++....... +
T Consensus 155 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~-~~~~~~~~~--------~-------- 217 (285)
T cd06660 155 LEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLT-GKYLPGAPP--------P-------- 217 (285)
T ss_pred HHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceec-CCCCCCCCC--------C--------
Confidence 9999887 89999999999999986668999999999999999999999887 331111000 0
Q ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 018998 242 HNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAI 310 (347)
Q Consensus 242 ~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l 310 (347)
.......+..++++++++++|+|++|++++|.++++|+|+++++||++|+++...+||+++++.|+++
T Consensus 218 -~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 218 -EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred -hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 01145689999999999999999999999999999999999999999999999999999999999863
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.6e-56 Score=410.14 Aligned_cols=273 Identities=31% Similarity=0.522 Sum_probs=237.3
Q ss_pred ceeCCCCCcccCcceeccccccc--cCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEE
Q 018998 6 RMKLGSQGLEVSAQGLGCMGMSA--LYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (347)
Q Consensus 6 ~~~Lg~tg~~vs~l~lG~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i 83 (347)
++.|+ |++||+||||||++|+ .||...+++++.++|+.|+++|||+||||+.||.|.+|+.||++|+. .|++++|
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i 85 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTI 85 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEE
Confidence 34563 9999999999999975 36655577899999999999999999999999999999999999975 5999999
Q ss_pred EeecCccccC-CCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCC-----CCCHHHHHHHHHHHHHcCCcceEecC
Q 018998 84 ATKFGIGIVD-GKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----QTPIEVTIGELKKLVEEGKIKYIGLS 157 (347)
Q Consensus 84 ~tK~~~~~~~-~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~~L~~l~~~G~ir~iGvS 157 (347)
+||++....+ .....+.+++.+++++++||++||+||||+|++|+++. ....+++|++|++|+++||||+||||
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvS 165 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLS 165 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEec
Confidence 9999754322 11234568999999999999999999999999888521 23477899999999999999999999
Q ss_pred cchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCC
Q 018998 158 EASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQP 237 (347)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~ 237 (347)
||+.++++++.+..+++++|++||++++.. ++++++|+++||++++|+||+++...
T Consensus 166 n~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~~----------------------- 221 (290)
T PRK10376 166 NVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTPL----------------------- 221 (290)
T ss_pred CCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCChh-----------------------
Confidence 999999999988888999999999998763 57999999999999999999743100
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 018998 238 GNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 313 (347)
Q Consensus 238 ~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~~ 313 (347)
..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.++
T Consensus 222 --------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 222 --------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 02478999999999999999999999877778999999999999999999999999999999998764
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.6e-56 Score=411.04 Aligned_cols=276 Identities=35% Similarity=0.537 Sum_probs=233.7
Q ss_pred cceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc--CCCCCeEEEeecCccccCCC
Q 018998 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGIVDGK 95 (347)
Q Consensus 18 ~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~--~~R~~~~i~tK~~~~~~~~~ 95 (347)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||.|.+|+.||++|+. .+|++++|+||+ .....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~---~~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKV---YGDGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEE---ESSSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccc---ccccc
Confidence 589999999753 4589999999999999999999999999999999999999998 699999999999 11223
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCcchHHHHHHH--hcCCC
Q 018998 96 YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRA--HAVHP 172 (347)
Q Consensus 96 ~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~--~~~~~ 172 (347)
.....+++.+++++++||++||+||||+|+||+|+.... ..++|++|++|+++|+||+||||||+++.++.+ ....+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 345778999999999999999999999999999999988 899999999999999999999999999999999 55578
Q ss_pred eeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCC-CCCCCccccccCCCCCCCchhhhHHHHHHHH
Q 018998 173 ITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLA-ESLSEGDYRKHLPRFQPGNLEHNQKLFECVN 251 (347)
Q Consensus 173 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~ 251 (347)
++++|++||++++...++++++|+++||++++|+|+++|+|+ ++... ...+.... ........+.+.
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~-~~~~~~~~~~~~~~-----------~~~~~~~~~~l~ 222 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLT-GKYKSPPPPPSRAS-----------LRDAQELADALR 222 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGG-TTTTTTTTSTTTSG-----------SSTHGGGHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccc-cccccCCCcccccc-----------cchhhhhhhhhh
Confidence 999999999997777889999999999999999999999998 44221 11111110 001455677999
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 018998 252 EIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIA 311 (347)
Q Consensus 252 ~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~ 311 (347)
++++++|+|++|+||+|+++++.+++||+|+++++|+++|+++++.+||++++++|++++
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999875
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.7e-54 Score=392.70 Aligned_cols=246 Identities=27% Similarity=0.408 Sum_probs=220.2
Q ss_pred cccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc--CCCCCeEEEeecCccc
Q 018998 14 LEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGI 91 (347)
Q Consensus 14 ~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~--~~R~~~~i~tK~~~~~ 91 (347)
++||.||||||++ +.+++.++++.|+++|||+||||+.|| +|+.+|++|++ .+|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 3699999999986 246799999999999999999999999 69999999985 369999999998532
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhc
Q 018998 92 VDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ--TPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA 169 (347)
Q Consensus 92 ~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 169 (347)
..+++.+++++++||++||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.++++++.+
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 3578999999999999999999999999999764 4678999999999999999999999999999988766
Q ss_pred C---CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHH
Q 018998 170 V---HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKL 246 (347)
Q Consensus 170 ~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 246 (347)
. .+++++|++||++++. .+++++|+++||++++|+||++|.+. . .
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~-~---------------~-------------- 189 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVL-K---------------D-------------- 189 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCccc-C---------------C--------------
Confidence 4 3679999999999874 58999999999999999999998654 0 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 018998 247 FECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 313 (347)
Q Consensus 247 ~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~~ 313 (347)
..+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++||++++++|+++.++
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 268899999999999999999999975 6999999999999999999999999999999999754
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.5e-54 Score=387.64 Aligned_cols=259 Identities=29% Similarity=0.436 Sum_probs=231.4
Q ss_pred ceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc------CCCC
Q 018998 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG------GFRE 79 (347)
Q Consensus 6 ~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~------~~R~ 79 (347)
+..| ++|.++|.||||||+. +..+..+.++.|++.||||||||..|+ +|+.+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6789 8999999999999983 568899999999999999999999999 89999999995 3899
Q ss_pred CeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC----------------CCHHHHHHHHH
Q 018998 80 RAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ----------------TPIEVTIGELK 143 (347)
Q Consensus 80 ~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~----------------~~~~~~~~~L~ 143 (347)
++||+||++.. .+.++.++.++++||++||+||+|+|++|||-.. .+..++|++||
T Consensus 74 diFiTSKlw~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 74 DIFITSKLWPT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred hheeeeccCcc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 99999999865 4578899999999999999999999999999553 24568999999
Q ss_pred HHHHcCCcceEecCcchHHHHHHHhcC--CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCC
Q 018998 144 KLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAE 221 (347)
Q Consensus 144 ~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~ 221 (347)
++++.|++|+||||||+..+|+++... .++.++|+++|++.++ ..++++|+++||.|.||+||+.+--.
T Consensus 146 ~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~~------- 216 (300)
T KOG1577|consen 146 KLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGRG------- 216 (300)
T ss_pred HHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCCc-------
Confidence 999999999999999999999999876 6789999999998774 57999999999999999999976210
Q ss_pred CCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCH
Q 018998 222 SLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITP 301 (347)
Q Consensus 222 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~ 301 (347)
+ + ..--+.+.+||++||.|++|++|||+++++. +|||.++|++||.||++.+++.||+
T Consensus 217 ~----------~----------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 217 S----------D----------LLEDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred c----------c----------cccCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 0 0 0011489999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 018998 302 EEMAELEAIASADN 315 (347)
Q Consensus 302 e~~~~i~~l~~~~~ 315 (347)
||++.|+.+..+.+
T Consensus 275 ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 275 EDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHHhhccccce
Confidence 99999998877664
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.8e-54 Score=396.65 Aligned_cols=269 Identities=20% Similarity=0.265 Sum_probs=227.9
Q ss_pred CcccCcceecccccccc-------CCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEe
Q 018998 13 GLEVSAQGLGCMGMSAL-------YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELAT 85 (347)
Q Consensus 13 g~~vs~l~lG~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~t 85 (347)
+++||+||||||++|+. |+. ++++++.++|+.|+++||||||||+.||. ||+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 343 58899999999999999999999999975 999999999863346788888
Q ss_pred ecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC-CCH-HHHHHHHHHHHHcCCcceEecCcchHHH
Q 018998 86 KFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPI-EVTIGELKKLVEEGKIKYIGLSEASAST 163 (347)
Q Consensus 86 K~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~-~~~-~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 163 (347)
|.. +.+++.+++++++||++||+||||+|++|+|+.. .+. +++|++|++|+++||||+|||||+++++
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 148 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDD 148 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHH
Confidence 842 2368899999999999999999999999999763 233 5789999999999999999999999999
Q ss_pred HHHHhcCCCeeEEeeeccccccchh-hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhh
Q 018998 164 IRRAHAVHPITAVQLEWSLWTRDVE-EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEH 242 (347)
Q Consensus 164 l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 242 (347)
+..+....+++++|++||+++++.+ .+++++|+++||++++|+||++|+|+ +.. ... + ..+..
T Consensus 149 ~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~-~~~--~~~---------~----~~~~~ 212 (292)
T PRK14863 149 PVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF-LPP--DRV---------P----AQLKG 212 (292)
T ss_pred HHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc-CCc--ccC---------c----cchhh
Confidence 8888777889999999999998754 46999999999999999999999997 221 000 0 01112
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 018998 243 NQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAI 310 (347)
Q Consensus 243 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l 310 (347)
......++.+++.+++++++|+||+|++++|.|+++|+|+++++|+++|+++.+.+++++.+++|..-
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCC
Confidence 23445677888889999999999999999999999999999999999999999989999887766543
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=7.1e-53 Score=386.76 Aligned_cols=261 Identities=26% Similarity=0.366 Sum_probs=228.9
Q ss_pred CCCCcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcC--CC
Q 018998 1 MATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGG--FR 78 (347)
Q Consensus 1 ~~~m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~--~R 78 (347)
|+..++..| ++|+.||.||||||++ +.+++.+++++|+++|||+||||+.|| +|+.+|++|+.. +|
T Consensus 1 ~~~~~~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R 68 (275)
T PRK11565 1 MANPTVIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAR 68 (275)
T ss_pred CCCCceEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCH
Confidence 565667788 8999999999999975 457899999999999999999999998 799999999863 59
Q ss_pred CCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCC-CHHHHHHHHHHHHHcCCcceEecC
Q 018998 79 ERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT-PIEVTIGELKKLVEEGKIKYIGLS 157 (347)
Q Consensus 79 ~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ir~iGvS 157 (347)
++++|+||++. .+++.+++++++||++||+||||+|++|+|+... ...++|++|++|+++|+||+||||
T Consensus 69 ~~~~i~tK~~~----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 69 EELFITTKLWN----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred HHEEEEEEecC----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 99999999852 1467899999999999999999999999998754 467999999999999999999999
Q ss_pred cchHHHHHHHhcC--CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCC
Q 018998 158 EASASTIRRAHAV--HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRF 235 (347)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~ 235 (347)
|+++++++++... ..++++|++|+++.+. .+++++|+++||++++|+||++|... .+
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~~-------------------~~ 197 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGKG-------------------VF 197 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCcc-------------------cc
Confidence 9999999888754 3468899999998874 57999999999999999999976210 00
Q ss_pred CCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhccCC
Q 018998 236 QPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADN 315 (347)
Q Consensus 236 ~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~~~~ 315 (347)
. .+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++|+++++++|+.+.....
T Consensus 198 ~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 198 D----------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred c----------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 0 1468999999999999999999999986 689999999999999999999999999999999986554
Q ss_pred C
Q 018998 316 V 316 (347)
Q Consensus 316 ~ 316 (347)
+
T Consensus 266 ~ 266 (275)
T PRK11565 266 L 266 (275)
T ss_pred c
Confidence 4
No 15
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5.4e-53 Score=365.99 Aligned_cols=286 Identities=23% Similarity=0.328 Sum_probs=250.8
Q ss_pred CCCCcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCC
Q 018998 1 MATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRER 80 (347)
Q Consensus 1 ~~~m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~ 80 (347)
|..|+||.||+||++||+|+||+..+|..|+.. ++++....+..|+++|||+|||++.||++++|.++|.++++.||+.
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~a 97 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREA 97 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhh
Confidence 357999999999999999999999999999874 6777777777799999999999999999999999999999999999
Q ss_pred eEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC----CCHHHHHHHHHHHHHcCCcceEec
Q 018998 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ----TPIEVTIGELKKLVEEGKIKYIGL 156 (347)
Q Consensus 81 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~----~~~~~~~~~L~~l~~~G~ir~iGv 156 (347)
++|+|||+....+....++++++.++++|++||++|++||+|++++|..+.. ..+.|++.+|++++++||||+|||
T Consensus 98 YyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 98 YYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 9999999976555555689999999999999999999999999999988655 345699999999999999999999
Q ss_pred CcchHHHHHHHhcC--CCeeEEe--eeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccC
Q 018998 157 SEASASTIRRAHAV--HPITAVQ--LEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHL 232 (347)
Q Consensus 157 S~~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~ 232 (347)
+.++.+.+.++.+. +.++++. .+|++.+.. .-..+++.+.+|++|++-++++.|+|+. ..
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~---------------~g 241 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTN---------------QG 241 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhc---------------CC
Confidence 99999999998876 3467765 566665543 2367888889999999999999999982 23
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHH
Q 018998 233 PRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEE 303 (347)
Q Consensus 233 p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~ 303 (347)
|.-+++-.++.++...+..++|++.|++.+.+|+.|+++.++++++++|+++.++++.|+++....||..+
T Consensus 242 p~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~ 312 (342)
T KOG1576|consen 242 PPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKH 312 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchh
Confidence 33344557788999999999999999999999999999999999999999999999999998777888733
No 16
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=5.7e-53 Score=363.35 Aligned_cols=284 Identities=28% Similarity=0.438 Sum_probs=255.4
Q ss_pred CcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc--CCCCCe
Q 018998 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERA 81 (347)
Q Consensus 4 m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~--~~R~~~ 81 (347)
|++..||+.|+.+|+|.+|+|++.. |+ ....+....++.|++.|||+||-|+.||+|+.|.++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999853 33 245789999999999999999999999999999999999986 479999
Q ss_pred EEEeecCccccCC----CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 018998 82 ELATKFGIGIVDG----KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS 157 (347)
Q Consensus 82 ~i~tK~~~~~~~~----~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS 157 (347)
.|.||||...... ...++.+.++|..|||+||++|+|||+|++++|+||+..+.+|+.+|+..|++.||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999764422 235688999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcC--CCeeEEeeeccccccc-hhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCC
Q 018998 158 EASASTIRRAHAV--HPITAVQLEWSLWTRD-VEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPR 234 (347)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~ 234 (347)
||++.+++-+.+. .++.++|++.|+++.. ..++.+++|+.+.|.+++||||++|.+..|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 9999999888776 4579999999998764 3468999999999999999999998665231
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhC-CCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHhcc
Q 018998 235 FQPGNLEHNQKLFECVNEIAANKG-CTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 313 (347)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~ia~~~g-~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~i~~l~~~ 313 (347)
+..+.+..++..+|.++| +|..++|++|++.+|.-..||+|+.+++++++.++++++.||.++|-+|..+...
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 345778889999999999 7999999999999999999999999999999999999999999999999888643
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.6e-50 Score=361.85 Aligned_cols=272 Identities=28% Similarity=0.380 Sum_probs=242.7
Q ss_pred CcceeCCCCCcccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEE
Q 018998 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (347)
Q Consensus 4 m~~~~Lg~tg~~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i 83 (347)
|.||++|+||.++|.||||||++-..|...+|.+.+.+++++|+++|||+||||..|..|.||..+|+||++..|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 89999999999999999999998765666678999999999999999999999999988889999999999988999999
Q ss_pred EeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHH-----HHHHHHHHHHHcCCcceEecCc
Q 018998 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE-----VTIGELKKLVEEGKIKYIGLSE 158 (347)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~-----~~~~~L~~l~~~G~ir~iGvS~ 158 (347)
+||+..+. --+.+.+++-++++|++||+||+|+|++|.... ..++ ..++++++++++|+||++|+|.
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 99997553 347899999999999999999999999999987 4333 3689999999999999999999
Q ss_pred c-hHHHHHHHhcCCCeeEEeeeccccccchh--hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCC
Q 018998 159 A-SASTIRRAHAVHPITAVQLEWSLWTRDVE--EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRF 235 (347)
Q Consensus 159 ~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~ 235 (347)
| +.+.+.+++...++|++|++||.++.... .+.+++|.++|++|+.++|+.+|-|. ...|
T Consensus 153 Hgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~---------------~~vP-- 215 (391)
T COG1453 153 HGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLL---------------YNVP-- 215 (391)
T ss_pred CCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcc---------------cCCC--
Confidence 8 56788999999999999999999987643 38999999999999999999998766 0123
Q ss_pred CCCchhhhHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCC--C-CCHHHHHHHHHH
Q 018998 236 QPGNLEHNQKLFECVNEIAANKG--CTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV--K-ITPEEMAELEAI 310 (347)
Q Consensus 236 ~~~~~~~~~~~~~~l~~ia~~~g--~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~--~-Lt~e~~~~i~~l 310 (347)
+++++|+++++ .||+..|+||++++|.|+++++|+++++|++||++.++. | ||++|.+.|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 47889998886 689999999999999999999999999999999998864 4 999999887777
Q ss_pred hc
Q 018998 311 AS 312 (347)
Q Consensus 311 ~~ 312 (347)
.+
T Consensus 284 ~~ 285 (391)
T COG1453 284 EE 285 (391)
T ss_pred HH
Confidence 64
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.89 E-value=2.6e-05 Score=68.09 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC--CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcc
Q 018998 136 EVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 136 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~ 206 (347)
.+.|..||+++.+|+|..||||.|++.+|+++++. ..+.++|++..-.+.-+ .++..||..+.|++..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 46899999999999999999999999999999987 45677787766655443 589999999999999875
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.28 E-value=3.5 Score=38.50 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCC-chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPH-TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G-~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL 113 (347)
+.++..+.++.+.+.|++.|+.-- |.. ..+.-.=+++++... ++-|.-++... ++.+.. ..+-+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~---------~~~~~A-~~~~~~l 200 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQG---------WTPEEA-VELLREL 200 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCCC---------cCHHHH-HHHHHHH
Confidence 557778888889999999998742 211 111122233333222 56677776432 344332 2233445
Q ss_pred HHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeeccccc-cchhhch
Q 018998 114 KRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWT-RDVEEDI 191 (347)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~l 191 (347)
+.++ +.++-.|-.. +.++.+.+|++...|. ..|=+-++.+.++++++...++++|+..+.+- -..-..+
T Consensus 201 ~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~ 271 (316)
T cd03319 201 AELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRI 271 (316)
T ss_pred HhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHH
Confidence 5554 4444444332 2466778888877775 34555678899999999888999998766542 1123578
Q ss_pred HHHHHHhCCeEEEcccCCC
Q 018998 192 IPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 192 ~~~~~~~gi~via~~pl~~ 210 (347)
..+|+++|+.++..+-+..
T Consensus 272 ~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 272 ADLARAAGLKVMVGCMVES 290 (316)
T ss_pred HHHHHHcCCCEEEECchhh
Confidence 9999999999998765543
No 20
>PRK07945 hypothetical protein; Provisional
Probab=86.78 E-value=12 Score=35.49 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHCCCCeeeCcCCcCC-----CchHHHHHHHhhc------CCCCCeEEEeecCccccCCCCCCCCCHHH
Q 018998 36 EPDMIALIRHAINSGITFLDTSDIYGP-----HTNEILLGKAFKG------GFRERAELATKFGIGIVDGKYGYHGDPAY 104 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----G~sE~~lG~aL~~------~~R~~~~i~tK~~~~~~~~~~~~~~~~~~ 104 (347)
.....+++++|.+.|+..+=.++|.-. +.+...+-..++. .-++ |.-++|.... ...+...+.
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~---I~Il~GiE~d---~~~~g~~~~ 183 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP---FRILTGIEVD---ILDDGSLDQ 183 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEeEec---ccCCCCcch
Confidence 455788999999999998877666421 2122223333222 1122 2223332210 000122222
Q ss_pred HHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEec
Q 018998 105 VRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGL 156 (347)
Q Consensus 105 i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv 156 (347)
.. +.|+. .||+ +.-+|+... .+.++..+.|.++.+.+.+..+|=
T Consensus 184 ~~----~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 184 EP----ELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred hH----HHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEec
Confidence 22 23332 5565 667897643 334566677888788888777763
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=85.91 E-value=28 Score=32.97 Aligned_cols=153 Identities=11% Similarity=0.092 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCc--CCcCCC---chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTS--DIYGPH---TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~G---~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v 109 (347)
+.++..+.++.+.+.|++.|-.- ..|..+ +-...+=+++++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~---------~~~~~~a~--- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG---------RWDLAEAI--- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC---------CCCHHHHH---
Confidence 35677778888889999998753 222100 01111223344323345556555432 23444333
Q ss_pred HHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-ch
Q 018998 110 EASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DV 187 (347)
Q Consensus 110 ~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 187 (347)
+.++.|. ..++.++..|-+. +.++.+.+|++.-.+. ..|=|.++++.+.++++...++++|+.....-. ..
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 3333332 2245566666543 2466778888876554 344456789999999988888999987665431 12
Q ss_pred hhchHHHHHHhCCeEEEcc
Q 018998 188 EEDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 188 ~~~l~~~~~~~gi~via~~ 206 (347)
-..+.+.|+++|+.++..+
T Consensus 280 ~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 280 AKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHcCCeEeccC
Confidence 3589999999999988765
No 22
>PRK08392 hypothetical protein; Provisional
Probab=85.88 E-value=23 Score=30.98 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhc---C-CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHH
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG---G-FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~---~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~s 112 (347)
....++++.|.+.|++.+=.++|.-....+ -+...++. . .+.++ .-..|.... ..+.. ..-.++.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~-~~~~y~~~i~~l~~~~~i--~il~GiE~~-------~~~~~-~~~~~~~ 82 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPS-KFNAYINEIRQWGEESEI--VVLAGIEAN-------ITPNG-VDITDDF 82 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchh-hHHHHHHHHHHHhhccCc--eEEEeEEee-------ecCCc-chhHHHH
Confidence 347789999999999999777665321011 12222211 1 11222 223332210 00010 1222333
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCc----c----hHHHHHH----HhcCC-CeeEEeee
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSE----A----SASTIRR----AHAVH-PITAVQLE 179 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~----~----~~~~l~~----~~~~~-~~~~~q~~ 179 (347)
++ ..||+ +.-+|.+......++..+.+.++.+.+.+.-+|=-. + ..+.+++ +.+.. .+.++
T Consensus 83 ~~--~~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN--- 156 (215)
T PRK08392 83 AK--KLDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS--- 156 (215)
T ss_pred Hh--hCCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe---
Confidence 44 24555 667885433333456678888888888776555321 1 1122222 22222 22222
Q ss_pred ccccccchhhchHHHHHHhCCeEEE
Q 018998 180 WSLWTRDVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 180 ~n~~~~~~~~~l~~~~~~~gi~via 204 (347)
-..+.+...+++.|++.|+.++.
T Consensus 157 --t~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 157 --SRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred --CCCCCCCHHHHHHHHHcCCEEEE
Confidence 22223445789999999976543
No 23
>PRK08609 hypothetical protein; Provisional
Probab=84.72 E-value=11 Score=38.38 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHCCCCeeeCcCCcC-----CCchHHHHHHHh------hc-CCCCCeEEEeecCccccCCCCCCCCCHHHH
Q 018998 38 DMIALIRHAINSGITFLDTSDIYG-----PHTNEILLGKAF------KG-GFRERAELATKFGIGIVDGKYGYHGDPAYV 105 (347)
Q Consensus 38 ~~~~~l~~A~~~Gi~~~DtA~~Yg-----~G~sE~~lG~aL------~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i 105 (347)
...++++.|.+.|++++=.++|+. .|.+...+-..+ ++ +..=++++-.-+.... +...+
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~-------~g~~d-- 420 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP-------DGSLD-- 420 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC-------Ccchh--
Confidence 356699999999999998888762 222333333332 22 1111233333332211 11112
Q ss_pred HHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCc---------c--hHHHHHHHhcCCCee
Q 018998 106 RAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSE---------A--SASTIRRAHAVHPIT 174 (347)
Q Consensus 106 ~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---------~--~~~~l~~~~~~~~~~ 174 (347)
-.+..|+. .||+ +.-+|++.. .+.++.++.+.++.+.|.+--||=-. + +.+.+.+++.... .
T Consensus 421 --~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 421 --YDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred --hcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 12234443 5665 667887533 34567788888888888877665432 1 1123333322122 3
Q ss_pred EEeeeccccccchhhchHHHHHHhCCeEE
Q 018998 175 AVQLEWSLWTRDVEEDIIPTCRELGIGIV 203 (347)
Q Consensus 175 ~~q~~~n~~~~~~~~~l~~~~~~~gi~vi 203 (347)
++|++-+.+.......++..|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 55555554433334678888999988643
No 24
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=84.44 E-value=31 Score=31.17 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHH--HHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEI--LLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~--~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~s 112 (347)
+.++..+.++.+.+.|++.|-.-- |.. .++ ..=+++++.-.+++.|.-.... .++.+...+-+ +.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~-~~~d~~~v~~vr~~~g~~~~l~vDan~---------~~~~~~a~~~~-~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRD-PARDVAVVAALREAVGDDAELRVDANR---------GWTPKQAIRAL-RA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCC-HHHHHHHHHHHHHhcCCCCEEEEeCCC---------CcCHHHHHHHH-HH
Confidence 456677788888999999887532 111 222 2223444433334555444321 23444433322 34
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhc
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEED 190 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 190 (347)
|+.++ +.++..|-.. +.++.+.+|++.-.+. ..|=+-++...+.++++...++++|+..+..-. ..-..
T Consensus 152 l~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 152 LEDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred HHhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHH
Confidence 44444 4445666443 2356677777776554 444456788899998888889999988766432 22357
Q ss_pred hHHHHHHhCCeEEEcccCCCC
Q 018998 191 IIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 191 l~~~~~~~gi~via~~pl~~G 211 (347)
+.+.|+++|+.++..+.+..+
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHcCCcEEecCccchH
Confidence 999999999999987665443
No 25
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=81.29 E-value=27 Score=32.63 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeeC---cC-----CcCCC----chHHHHHHHhhcC---CCCCeEEEeecCccccCCCCCCC
Q 018998 35 PEPDMIALIRHAINSGITFLDT---SD-----IYGPH----TNEILLGKAFKGG---FRERAELATKFGIGIVDGKYGYH 99 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~G----~sE~~lG~aL~~~---~R~~~~i~tK~~~~~~~~~~~~~ 99 (347)
+.++..+....+.+.|+..+|- ++ .||.| ..-+.+.+.++.. -.+++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 5677777788888999999993 22 36655 2345555555442 2225779999765421
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHH---HHHHHHHHHHHcCCcceEecCc-chHHHHHHHhcCCCeeE
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE---VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITA 175 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~---~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~ 175 (347)
+.+.. ..+-+.++..| +|.+.+|.-....... --|+...++++.-.|--||..+ .++++.+++++....|.
T Consensus 146 -~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~Dg 220 (312)
T PRK10550 146 -SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDA 220 (312)
T ss_pred -CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCE
Confidence 11222 34555567767 4677788654322111 1367777777776777777776 47788888877777777
Q ss_pred Eeee
Q 018998 176 VQLE 179 (347)
Q Consensus 176 ~q~~ 179 (347)
+++-
T Consensus 221 VmiG 224 (312)
T PRK10550 221 VMIG 224 (312)
T ss_pred EEEc
Confidence 7763
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=80.82 E-value=16 Score=32.85 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCcchHHHHHHHhcCCCeeEEe
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEG-KIKYIGLSEASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (347)
.++.+...+-+ +.|..+|+++|.+-..-.+.........++.++++.+.+ .++...++......++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 44555555544 457789999998876655433222345688888898888 5776677765566677766654 46666
Q ss_pred eeccccc--------cc------hhhchHHHHHHhCCeEEEcc
Q 018998 178 LEWSLWT--------RD------VEEDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 178 ~~~n~~~--------~~------~~~~l~~~~~~~gi~via~~ 206 (347)
+.+...+ +. .-...++++++.|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6554431 11 11367888999998876644
No 27
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=79.57 E-value=5.7 Score=34.80 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeeec
Q 018998 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 180 (347)
Q Consensus 112 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 180 (347)
.+..+|.||+=+++........+.+.+-+..+.+ .+.++.+||. |.+++.+.++.+...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 4566999999997655444445455443333332 3568889996 77899999999888999999864
No 28
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=78.37 E-value=39 Score=30.62 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEee-ccCCCCC-CHHHHH----HHHHHHHHcCCcceEecCcchHHHHHHHhcCCCe
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQ-HRIDTQT-PIEVTI----GELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 173 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~p~~~~-~~~~~~----~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 173 (347)
.+.+.+.+..++.+ .-|.|+||+=.- -+|+... +.++-+ ..++.+++.-.+- +.+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 34455544444433 448899998532 2454332 233333 3456666553333 7888999999999988753
Q ss_pred eEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHH
Q 018998 174 TAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEI 253 (347)
Q Consensus 174 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~i 253 (347)
+.+ +..+.... ...+++.+++.|..++.+.. .|.-. ..+ ..|.+ ..-.+.....+++..+.
T Consensus 98 ~iI-Ndisg~~~--~~~~~~l~~~~~~~vV~m~~--~g~p~----~~~---------~~~~~-~~~~~~~~~~~~~~i~~ 158 (257)
T cd00739 98 DII-NDVSGGSD--DPAMLEVAAEYGAPLVLMHM--RGTPK----TMQ---------ENPYY-EDVVDEVLSFLEARLEA 158 (257)
T ss_pred CEE-EeCCCCCC--ChHHHHHHHHcCCCEEEECC--CCCCc----ccc---------cCCCc-ccHHHHHHHHHHHHHHH
Confidence 322 23333322 15789999999999999442 22100 000 01111 11234555666777788
Q ss_pred HHHhCCCHHHHH
Q 018998 254 AANKGCTPSQLA 265 (347)
Q Consensus 254 a~~~g~s~~qla 265 (347)
|.++|++..++.
T Consensus 159 ~~~~Gi~~~~Ii 170 (257)
T cd00739 159 AESAGVARNRII 170 (257)
T ss_pred HHHcCCCHHHEE
Confidence 888888655544
No 29
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=74.57 E-value=13 Score=35.84 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHc
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL 116 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L 116 (347)
-....++++|++.|++++|||.+... +.-+.... .+..+.+..-+|..+ ..+--.....+++--.
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a---~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEA---KKAGITAVLGCGFDP-------GITNVLAAYAAKELFD-- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHH---HHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc--
Confidence 44568999999999999999987653 22222222 345566666666543 2232223333333222
Q ss_pred CCCccceEeeccCCCC
Q 018998 117 DVDCIDLYYQHRIDTQ 132 (347)
Q Consensus 117 g~d~iDl~~lH~p~~~ 132 (347)
.+++||+|..+.|+..
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 6889999999998776
No 30
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=74.21 E-value=69 Score=29.11 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEeeec
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEW 180 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 180 (347)
+.+.+.+...+. ..-|.|+||+=.- +......+.....++.+++.-.+ -+-+.+++++.++.+++..+=..+.+..
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 444454444433 3568999999643 22222233444556666544222 3788889999999998862111222333
Q ss_pred cccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCC
Q 018998 181 SLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCT 260 (347)
Q Consensus 181 n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s 260 (347)
+..... .+.+++.+++.|+.++...--..|. | ...+.....++++.+.|.++|++
T Consensus 99 s~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~--------------------P----~t~~~~~~~l~~~v~~a~~~GI~ 153 (261)
T PRK07535 99 SAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI--------------------P----KDAEDRLAVAKELVEKADEYGIP 153 (261)
T ss_pred CCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC--------------------C----CCHHHHHHHHHHHHHHHHHcCCC
Confidence 332211 3478999999999999854332331 1 11233455666777788899987
Q ss_pred HHHHH
Q 018998 261 PSQLA 265 (347)
Q Consensus 261 ~~qla 265 (347)
+.++.
T Consensus 154 ~~~Ii 158 (261)
T PRK07535 154 PEDIY 158 (261)
T ss_pred HhHEE
Confidence 77665
No 31
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=73.67 E-value=73 Score=29.37 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEee
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQL 178 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 178 (347)
.++.+. +..+-+.|.++|+++|.+-.++.|.......+.++.+..+.+...++...+. -....++.+.+... +.+.+
T Consensus 22 ~~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v~i 98 (287)
T PRK05692 22 FIPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEVAV 98 (287)
T ss_pred CcCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEEEE
Confidence 345544 4456677999999999998666564332223346666666554445555554 36677777776522 33333
Q ss_pred ecccc--------ccch------hhchHHHHHHhCCeEEEc
Q 018998 179 EWSLW--------TRDV------EEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 179 ~~n~~--------~~~~------~~~l~~~~~~~gi~via~ 205 (347)
-++.- .+.. -...+++++++|+.+.++
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 22221 1111 136899999999988643
No 32
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.62 E-value=74 Score=29.21 Aligned_cols=152 Identities=11% Similarity=0.141 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCc----------CCcCCCchHHHHHHHhhcCCCC-CeEEEeecCccccCCCCCCCCCHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTS----------DIYGPHTNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPA 103 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~G~sE~~lG~aL~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 103 (347)
+.++..+..+.+.++|+..||.- ..|+. +.+.+-+.++...+. ++-|..|+.+.. +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~--~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-----------~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT--DPEAVAEIVKAVKKATDVPVIVKLTPNV-----------T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC--CHHHHHHHHHHHHhccCCCEEEEeCCCc-----------h
Confidence 56778888888889999999862 22333 566666666653222 577889986431 1
Q ss_pred HHHHHHHHHHHHcCCCccceEe------eccCCCC-------------CCHHHHHHHHHHHHHcCCcceEecCcc-hHHH
Q 018998 104 YVRAACEASLKRLDVDCIDLYY------QHRIDTQ-------------TPIEVTIGELKKLVEEGKIKYIGLSEA-SAST 163 (347)
Q Consensus 104 ~i~~~v~~sL~~Lg~d~iDl~~------lH~p~~~-------------~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~ 163 (347)
.+. .+-+.++..|.|.|++.= +|.-... ....-.++.+.++++.=.+--||+... +++.
T Consensus 167 ~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 222 233457778888776631 1110000 001124567777777656888888875 7888
Q ss_pred HHHHhcCCCeeEEeeeccccc-----cchhhchHHHHHHhCCe
Q 018998 164 IRRAHAVHPITAVQLEWSLWT-----RDVEEDIIPTCRELGIG 201 (347)
Q Consensus 164 l~~~~~~~~~~~~q~~~n~~~-----~~~~~~l~~~~~~~gi~ 201 (347)
+.+++... .+.+|+--.++. +...+++-++..++|..
T Consensus 246 a~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 246 ALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred HHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 88888755 588876433322 11235666777777643
No 33
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.20 E-value=9 Score=33.63 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=46.9
Q ss_pred HHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeeecc
Q 018998 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 181 (347)
Q Consensus 112 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 181 (347)
.+..+|.|++=+++........+.+.+-+....+ .+.+..+||. +.+++.+.++.+...++++|++-+
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3456899999997544433434444433333332 3568899997 568899999998899999998653
No 34
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.90 E-value=85 Score=28.33 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEee-ccCCCC-CCH----HHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCe
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQ-HRIDTQ-TPI----EVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 173 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~p~~~-~~~----~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 173 (347)
.+.+.+.+..++.+ .-|.|+||+=.- -+|+.. .+. +.....++.+++.-.+ -+.+.++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 35556655555443 568999999642 334321 112 2344556666655233 37888999999999998763
Q ss_pred eEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHH
Q 018998 174 TAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEI 253 (347)
Q Consensus 174 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~i 253 (347)
+. -+..+.... ..++++.+++.|..++.+..-..|. . .+ ..|.| +...+.....+++..+.
T Consensus 98 ~i-INdis~~~~--~~~~~~l~~~~~~~vV~m~~~~~~~-----~-~~---------~~~~~-~~~~~~~~~~~~~~i~~ 158 (258)
T cd00423 98 DI-INDVSGGRG--DPEMAPLAAEYGAPVVLMHMDGTPQ-----T-MQ---------NNPYY-ADVVDEVVEFLEERVEA 158 (258)
T ss_pred CE-EEeCCCCCC--ChHHHHHHHHcCCCEEEECcCCCCc-----c-cc---------cCCCc-chHHHHHHHHHHHHHHH
Confidence 22 223333321 2578999999999999865332221 0 00 01111 22234556666667777
Q ss_pred HHHhCCCHHHHH
Q 018998 254 AANKGCTPSQLA 265 (347)
Q Consensus 254 a~~~g~s~~qla 265 (347)
+.+.|+...++.
T Consensus 159 ~~~~Gi~~~~Ii 170 (258)
T cd00423 159 ATEAGIPPEDII 170 (258)
T ss_pred HHHcCCCHHHEE
Confidence 778887554443
No 35
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=68.97 E-value=1.2e+02 Score=29.47 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHH-CCCCeeeCcCCcCCCchHH--HHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAIN-SGITFLDTSDIYGPHTNEI--LLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (347)
Q Consensus 35 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~G~sE~--~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~ 111 (347)
+.++..+.++.+.+ .|++.|=.-- |....+. -.=+++++.- .++.|..-... .++++.. -+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v~avRea~-~~~~l~vDaN~---------~w~~~~A----~~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAVKALAEAF-PGARLRLDPNG---------AWSLETA----IR 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHHHHHHHhC-CCCcEEEeCCC---------CcCHHHH----HH
Confidence 55666667777775 6999874321 1111111 1122333322 13334333221 3344433 33
Q ss_pred HHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhh
Q 018998 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEE 189 (347)
Q Consensus 112 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 189 (347)
.++.|. + ++.++-.|-. .++.+.+|++...+- +.|=|.++..++..+++...++++|......-. ..-.
T Consensus 232 ~~~~l~-~--~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE-G--VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC-c--CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 334444 2 6666766654 477888888887665 667677788899999888889999987765432 1235
Q ss_pred chHHHHHHhCCeEEEcccC
Q 018998 190 DIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 190 ~l~~~~~~~gi~via~~pl 208 (347)
.+.+.|+.+|+.++.++..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 8999999999999887754
No 36
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=68.06 E-value=25 Score=30.84 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCC-cceEecC-cchHHHHHHHhcCCCeeEEeeeccccccchhhc
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGK-IKYIGLS-EASASTIRRAHAVHPITAVQLEWSLWTRDVEED 190 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 190 (347)
...+|.||+=+++.-......+.++ ..++.+.-. +..+||. |.+.+.+.++++...++.+|++-.. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 4568999988876654333343333 333333333 7899997 5688899999999999999986542 335
Q ss_pred hHHHHHHhC-CeEEE
Q 018998 191 IIPTCRELG-IGIVA 204 (347)
Q Consensus 191 l~~~~~~~g-i~via 204 (347)
.++..++.. +.++-
T Consensus 89 ~~~~l~~~~~~~v~k 103 (208)
T COG0135 89 YIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHhhcCCceEE
Confidence 566666554 55543
No 37
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=65.64 E-value=55 Score=28.88 Aligned_cols=162 Identities=13% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCc-CCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHH
Q 018998 34 KPEPDMIALIRHAINSGITFLDTS-DIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~s 112 (347)
.+.++..++++.-.+.||..+++. +..+. ...+.+.+..+..+.. .+.+-+. ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~-----------~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNA--RLQALCR-----------ANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSS--EEEEEEE-----------SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccc--ccceeee-----------ehHHHHHHHHHhh
Confidence 367889999999999999999999 33321 2333444444332332 3333321 2455666666544
Q ss_pred HHHcCCCccceEeeccC-----CCCCC----HHHHHHHHHHHHHcCCcceEecCc---chHHHHHHHhcC---CCeeEEe
Q 018998 113 LKRLDVDCIDLYYQHRI-----DTQTP----IEVTIGELKKLVEEGKIKYIGLSE---ASASTIRRAHAV---HPITAVQ 177 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p-----~~~~~----~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~---~~~~~~q 177 (347)
...|.+.+.++.=-++ ....+ ++...+..+..++.|..-.+++-. ++++.+.++.+. ..++.+.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 4678887776642221 00111 334556667777888888888744 455555544332 2445555
Q ss_pred eeccc--cccchhhchHHHHHHh----CCeEEEcccCCC
Q 018998 178 LEWSL--WTRDVEEDIIPTCREL----GIGIVAYSPLGR 210 (347)
Q Consensus 178 ~~~n~--~~~~~~~~l~~~~~~~----gi~via~~pl~~ 210 (347)
+.=+. +.+..-.+++...+++ .+++.++.-++.
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred eeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 54333 2222224666666664 355666665544
No 38
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=65.17 E-value=16 Score=34.92 Aligned_cols=211 Identities=17% Similarity=0.084 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHH---HHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILL---GKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~l---G~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~ 111 (347)
+.++..+.++.|.++|++.+=|+=+...+..+..+ .+.++......+.|..=+.+..... ...+.+.+ .
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~---lg~~~~dl-----~ 83 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKK---LGISYDDL-----S 83 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT---TT-BTTBT-----H
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH---cCCCHHHH-----H
Confidence 57889999999999999999888766543222222 2222222344455555554321000 00011111 1
Q ss_pred HHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCC-CeeEEeeeccccccchh--
Q 018998 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH-PITAVQLEWSLWTRDVE-- 188 (347)
Q Consensus 112 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~-- 188 (347)
.++.||++.|- .|...+.++ ..+|-+.|.--.+=.|+.+.+.+..+.+.. .++-+..-+|.+.+...
T Consensus 84 ~~~~lGi~~lR------lD~Gf~~~~----ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGL 153 (357)
T PF05913_consen 84 FFKELGIDGLR------LDYGFSGEE----IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGL 153 (357)
T ss_dssp HHHHHT-SEEE------ESSS-SCHH----HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB
T ss_pred HHHHcCCCEEE------ECCCCCHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCC
Confidence 24445544332 133332232 333333366556667887788888888764 35555555666665411
Q ss_pred -----hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHH
Q 018998 189 -----EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQ 263 (347)
Q Consensus 189 -----~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 263 (347)
.+.=++.++.|+.+.|+-|=..+. . |+ ..+.+|.- ++|.--+..
T Consensus 154 s~~~f~~~n~~~k~~gi~~~AFI~g~~~~-r-GP-l~~GLPTl----------------------------E~hR~~~p~ 202 (357)
T PF05913_consen 154 SEEFFIEKNQLLKEYGIKTAAFIPGDENK-R-GP-LYEGLPTL----------------------------EKHRNLPPY 202 (357)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE--SSS--B-TT-T-S--BSB----------------------------GGGTTS-HH
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCcc-c-CC-ccCCCCcc----------------------------HHHcCCCHH
Confidence 245567788999999987665321 1 21 01111111 123334455
Q ss_pred HHHHHHHcCCCCeeeccCCC--cHHHHHHHHhh
Q 018998 264 LALAWVHHQGDDVCPIPGTT--KIANLNENIEA 294 (347)
Q Consensus 264 lal~~~l~~~~v~~~i~g~~--~~~~l~~nl~a 294 (347)
+|...+...+.+.-|++|-. +.+.+++....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 66777788887888999866 44455554443
No 39
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=65.13 E-value=2.8 Score=39.61 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=37.1
Q ss_pred cCCcceEecCcchHHHHHHHhcCCC-eeEEeeeccccccchhhchHHHHHHhCCe
Q 018998 148 EGKIKYIGLSEASASTIRRAHAVHP-ITAVQLEWSLWTRDVEEDIIPTCRELGIG 201 (347)
Q Consensus 148 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 201 (347)
-|+||++||--++++.+.++.+... -+..+.+..++-.-.+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999998876532 23333333443222345788888888876
No 40
>PRK13796 GTPase YqeH; Provisional
Probab=64.79 E-value=1.3e+02 Score=28.68 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHCC---CCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 34 KPEPDMIALIRHAINSG---ITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
.++++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|+-... .....+.+++-++
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~------~~~~~~~i~~~l~ 123 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLP------KSVKKNKVKNWLR 123 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCC------CccCHHHHHHHHH
Confidence 45667777777776655 556787664432 3344554443 456688999986532 1224556666666
Q ss_pred HHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHH
Q 018998 111 ASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIR 165 (347)
Q Consensus 111 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 165 (347)
...+.+|....|++++..-. ...++++.+.+.++.+.+.+-.+|.+|..-..|-
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLi 177 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLI 177 (365)
T ss_pred HHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHH
Confidence 66777776555777765443 3457888888888877788999999998765543
No 41
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=63.98 E-value=1.3e+02 Score=28.45 Aligned_cols=150 Identities=9% Similarity=0.007 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHH
Q 018998 36 EPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKR 115 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~ 115 (347)
.++..+.+....+.|++.|=.--....-..+.-.=+++++.-.+++.|..-... .++.+...+-+ +.|+.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~---------~~~~~~A~~~~-~~l~~ 211 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQ---------SLTVPEAIERG-QALDQ 211 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCC---------CcCHHHHHHHH-HHHHc
Confidence 455566667677888876532110100012222233444433344555443321 34554433322 22333
Q ss_pred cCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHH
Q 018998 116 LDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIP 193 (347)
Q Consensus 116 Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 193 (347)
+ ++.++-.|-.. +.++.+.+|++..-|. +.|=+.++..++.++++...++++|+..+..-. ..-..+.+
T Consensus 212 ~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~ 282 (355)
T cd03321 212 E-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASA 282 (355)
T ss_pred C-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHH
Confidence 3 45556666542 3467777887765543 455566889999999888888999987765432 11247899
Q ss_pred HHHHhCCeEEE
Q 018998 194 TCRELGIGIVA 204 (347)
Q Consensus 194 ~~~~~gi~via 204 (347)
.|+.+|+.++.
T Consensus 283 ~A~~~gi~~~~ 293 (355)
T cd03321 283 LAEQAGIPMSS 293 (355)
T ss_pred HHHHcCCeecc
Confidence 99999999764
No 42
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=62.38 E-value=1.3e+02 Score=27.55 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=20.3
Q ss_pred eeEEeeeccccccchhhchHHHHHHhCCe
Q 018998 173 ITAVQLEWSLWTRDVEEDIIPTCRELGIG 201 (347)
Q Consensus 173 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 201 (347)
+-+++.-||+..+.-.+..++.|++.|+.
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd 124 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVD 124 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCC
Confidence 46777788886655445677788888775
No 43
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=61.46 E-value=65 Score=28.97 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=51.5
Q ss_pred HHHHHcCCCccceEeeccCCCCCCHH-HHHHHHHHHHHcCCcceEecCc-chHHHHHHHhcCCCeeEEeeeccccccc-h
Q 018998 111 ASLKRLDVDCIDLYYQHRIDTQTPIE-VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWTRD-V 187 (347)
Q Consensus 111 ~sL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 187 (347)
+-++.+|. |.+.+|..+...... -.++.+.++++.-.+.-|.... .+++.+.++.....++.+.+---+.... .
T Consensus 162 ~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 34455564 666677655432211 1255566666655566555543 3677888888776566665422222221 2
Q ss_pred hhchHHHHHHhCCeE
Q 018998 188 EEDIIPTCRELGIGI 202 (347)
Q Consensus 188 ~~~l~~~~~~~gi~v 202 (347)
-.++.+.|+++|+.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 357889999999864
No 44
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=60.78 E-value=1.4e+02 Score=27.63 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=87.9
Q ss_pred ceeccccccccCCCCCCHHHHHHHHHHHH-HCCCCeeeCcCCcCCC---chHHHHHHHhhcC--CCCCeEEEeecCcccc
Q 018998 19 QGLGCMGMSALYGPPKPEPDMIALIRHAI-NSGITFLDTSDIYGPH---TNEILLGKAFKGG--FRERAELATKFGIGIV 92 (347)
Q Consensus 19 l~lG~~~~g~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~G---~sE~~lG~aL~~~--~R~~~~i~tK~~~~~~ 92 (347)
|.||.+.-+..-....+.++..+.+...+ ..|+..+|----|+.- .+-..+-++|+.. .+..+.|+.-+....
T Consensus 72 iS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p- 150 (294)
T cd06543 72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP- 150 (294)
T ss_pred EEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC-
Confidence 46676663321112234555555555555 4599999965444321 1224556666652 233555665553221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeccCCC--CCC-HHHHHHHHHHHHHcCCcceEecCcchHHHHHHH
Q 018998 93 DGKYGYHGDPAYVRAACEASLKRLD--VDCIDLYYQHRIDT--QTP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRA 167 (347)
Q Consensus 93 ~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lH~p~~--~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 167 (347)
....++.+ .+-+..+.-| +|+|.+.-...-.. ..+ -+.+..+.+.++.+=+--+=+.|.. ++-..
T Consensus 151 -----~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~s~~---~~~~~ 220 (294)
T cd06543 151 -----TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKLSDA---ELWAM 220 (294)
T ss_pred -----CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCCCHH---HHHHH
Confidence 12232222 2344444555 45666655533222 223 2445566666665433222233332 32223
Q ss_pred hcCCCeeEEeeecc--ccccchhhchHHHHHHhCCeEEEcccCCCC
Q 018998 168 HAVHPITAVQLEWS--LWTRDVEEDIIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 168 ~~~~~~~~~q~~~n--~~~~~~~~~l~~~~~~~gi~via~~pl~~G 211 (347)
+...|. +=+.... ++.....+.+.+|++++||+.++|..+.+-
T Consensus 221 ig~TpM-iG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 221 IGVTPM-IGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred cccccc-ccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 332221 1111110 222223368999999999999999888764
No 45
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=60.71 E-value=76 Score=28.74 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=41.0
Q ss_pred HHHHHHHcCCcceEecC--cchHHHHHHHhcC-CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCC
Q 018998 141 ELKKLVEEGKIKYIGLS--EASASTIRRAHAV-HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLG 209 (347)
Q Consensus 141 ~L~~l~~~G~ir~iGvS--~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~ 209 (347)
.|.+-.++|+. .+|+- ..++...+-+... ..+.++-.++.+++...-..++..|+..|+..+.+-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566774 45542 2234333333322 345555667888877655678888898998888866544
No 46
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.74 E-value=1.6e+02 Score=27.99 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCC---CHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeE
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT---PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITA 175 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~---~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 175 (347)
.++.+ -+..+-+.|.++|+++|++-..-+|.... +.++.++.+. +...++..++. .....++.+.+... +.
T Consensus 64 ~~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~~ 137 (347)
T PLN02746 64 IVPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-KE 137 (347)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-CE
Confidence 44544 45566777999999999997655553322 2234444544 32335555554 36778888877632 23
Q ss_pred Eeeeccc--c------ccchh------hchHHHHHHhCCeEEEcc
Q 018998 176 VQLEWSL--W------TRDVE------EDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 176 ~q~~~n~--~------~~~~~------~~l~~~~~~~gi~via~~ 206 (347)
+.+.++. . .+..+ .+++++++++|+.+.++-
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3232211 1 11111 368999999999886443
No 47
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=59.44 E-value=1.6e+02 Score=27.93 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~ 114 (347)
+.++..+.+..+.+.|++.|=.-- .+.+ +++++.-.+++.|..-.. ..++.+... +.++
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN---------~~w~~~~A~----~~~~ 184 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVH---------HRLTPNQAA----RFGK 184 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECC---------CCCCHHHHH----HHHH
Confidence 445666777777889998774310 1222 233332223444433222 123444322 2233
Q ss_pred HcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchH
Q 018998 115 RLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDII 192 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~ 192 (347)
.|. .+++.++-.|-+. +.++.+.+|++...+. ..|=|.++...++.++....++++|+.....-. ..-..+.
T Consensus 185 ~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia 258 (361)
T cd03322 185 DVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIA 258 (361)
T ss_pred Hhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHH
Confidence 333 2366667766542 3477788888887775 667777899999999988889999988765331 1235799
Q ss_pred HHHHHhCCeEEEcccC
Q 018998 193 PTCRELGIGIVAYSPL 208 (347)
Q Consensus 193 ~~~~~~gi~via~~pl 208 (347)
+.|+++|+.++.++..
T Consensus 259 ~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 259 DLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHcCCeeeccCCC
Confidence 9999999999876443
No 48
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.28 E-value=1.6e+02 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=14.8
Q ss_pred CHHHHHHHHH-------HHHHCCCCeeeCc
Q 018998 35 PEPDMIALIR-------HAINSGITFLDTS 57 (347)
Q Consensus 35 ~~~~~~~~l~-------~A~~~Gi~~~DtA 57 (347)
+.++..++++ .|.++|+..+|..
T Consensus 128 t~~eI~~i~~~f~~aA~~a~~aGfDgVeih 157 (353)
T cd02930 128 SEEEIEQTIEDFARCAALAREAGYDGVEIM 157 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4555544443 4567899999864
No 49
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=59.09 E-value=51 Score=29.00 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=60.6
Q ss_pred cceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHh
Q 018998 121 IDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCREL 198 (347)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 198 (347)
.++.++-.|-+.. .++.+.+|.+...+. ..+=|.++...+.+++....++++|+..+..-. ..-..+.+.|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4666676665433 356677788777665 344555678888788887888999987766432 1125788999999
Q ss_pred CCeEEEcccCCCC
Q 018998 199 GIGIVAYSPLGRG 211 (347)
Q Consensus 199 gi~via~~pl~~G 211 (347)
|+.++.++.+..+
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999987765543
No 50
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=58.25 E-value=43 Score=28.94 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=90.9
Q ss_pred HHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHH-----------HH
Q 018998 41 ALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRA-----------AC 109 (347)
Q Consensus 41 ~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~-----------~v 109 (347)
+++..-++-|-+.+|.....| .+-..|++. ++ +.. .|. ..+.+.+.+ .+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~-k~-v~g---~Gv---------Eid~~~v~~cv~rGv~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE-KQ-VDG---YGV---------EIDPDNVAACVARGVSVIQGDL 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHHh-cC-CeE---EEE---------ecCHHHHHHHHHcCCCEEECCH
Confidence 355667788889999876554 244555541 11 100 011 223333333 45
Q ss_pred HHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhc--CCCeeEEeeecccccc-c
Q 018998 110 EASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA--VHPITAVQLEWSLWTR-D 186 (347)
Q Consensus 110 ~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~-~ 186 (347)
++.|....-+.+|.+.+..--. .+..-...|+|+.+-|+-.-+++.||.-+..+-.+- -.-+..-..+|+-++- +
T Consensus 65 d~gL~~f~d~sFD~VIlsqtLQ--~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTLQ--AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HHhHhhCCCCCccEEehHhHHH--hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 6666667666777776653211 112334568888888998889999998776654333 2223444556554432 1
Q ss_pred ----hhhchHHHHHHhCCeEEEcccCCCCc
Q 018998 187 ----VEEDIIPTCRELGIGIVAYSPLGRGF 212 (347)
Q Consensus 187 ----~~~~l~~~~~~~gi~via~~pl~~G~ 212 (347)
--.+.-++|++.|+.+.-..++.++.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 12588999999999999999988764
No 51
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=57.87 E-value=58 Score=31.75 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=62.5
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHHHHc------CCcceEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHH
Q 018998 122 DLYYQHRIDTQTPIEVTIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPT 194 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~ 194 (347)
++ ++-.|-+..+.++.++.|.+|++. ..=-..+=|.++.+.+.+++...-.+++|+..+-+-. ..-..+.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677776554445668888888766 2223456667889999999988888999988775432 123589999
Q ss_pred HHHhCCeEEEcccC
Q 018998 195 CRELGIGIVAYSPL 208 (347)
Q Consensus 195 ~~~~gi~via~~pl 208 (347)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987665
No 52
>PLN00191 enolase
Probab=56.90 E-value=2.1e+02 Score=28.39 Aligned_cols=96 Identities=9% Similarity=0.045 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC--cchHHHHHHHhcCCCeeEEe
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS--EASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~q 177 (347)
.+++.+.+-+.+.++ ..++.++-.|-.. +.|+.+.+|.++.++.-+|=- ..++..++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 455555444444433 2367777777553 457778888888777766622 24588899999888889998
Q ss_pred eecccccc-chhhchHHHHHHhCCeEEE
Q 018998 178 LEWSLWTR-DVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 178 ~~~n~~~~-~~~~~l~~~~~~~gi~via 204 (347)
+..|-.-. ....++.+.|+.+|+.++.
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 88775332 2235799999999999876
No 53
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=56.71 E-value=40 Score=29.79 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCcceEec----CcchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCC
Q 018998 134 PIEVTIGELKKLVEEGKIKYIGL----SEASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLG 209 (347)
Q Consensus 134 ~~~~~~~~L~~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~ 209 (347)
..++..++|..|+ +..|.. |.+....++.+++...+.+ |.|+=+...++++...-+.|..++.-++-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~----~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV----YAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE----eecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 4566677777776 444443 4566667777777655433 344433334578888888999888888888
Q ss_pred CCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHH
Q 018998 210 RGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPS 262 (347)
Q Consensus 210 ~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 262 (347)
.|+-. ..... .. ..+..+.+..+.++||+.++
T Consensus 146 ~gL~~--~~lGr---------~i----------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDE--SWLGR---------RI----------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCCh--HHhCC---------cc----------CHHHHHHHHHHHHhcCCCcc
Confidence 77632 00000 11 13456788899999998763
No 54
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.10 E-value=1.6e+02 Score=26.64 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCC-----------cCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCH
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDI-----------YGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDP 102 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~-----------Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~ 102 (347)
.+.++..++++.-.+.||..++.... |-.-..++.+....+..+..++.+..- +. ....
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~~--------~~~~ 88 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLL--PG--------IGTV 88 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEec--CC--------ccCH
Confidence 47789999999999999999999721 111124455555544433333322211 11 1122
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC---cchHHHHHHHhcC---CCeeEE
Q 018998 103 AYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS---EASASTIRRAHAV---HPITAV 176 (347)
Q Consensus 103 ~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS---~~~~~~l~~~~~~---~~~~~~ 176 (347)
+.++..++ .|++.+-++. ...+.....+..+..++.|.--.+.++ ..+++.+.++.+. ...+.+
T Consensus 89 ----~~i~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 89 ----DDLKMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred ----HHHHHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 33444443 3666655543 112234567788888888875555542 2455554443332 334444
Q ss_pred eeeccc--cccchhhchHHHHHHh----CCeEEEcccCCC
Q 018998 177 QLEWSL--WTRDVEEDIIPTCREL----GIGIVAYSPLGR 210 (347)
Q Consensus 177 q~~~n~--~~~~~~~~l~~~~~~~----gi~via~~pl~~ 210 (347)
.+.=+. +.+..-.+++..++++ -+++.++.-++.
T Consensus 159 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 159 YVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred EEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence 443222 2222224566666655 244555555544
No 55
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=55.20 E-value=1.5e+02 Score=26.10 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhc---CCCeeEE
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA---VHPITAV 176 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~~ 176 (347)
++.+. +..+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++...+ ...++.+
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 45544 4445567999999999987 332222234455666666666 3444444445555555332 2344444
Q ss_pred eeeccccc--c------------chhhchHHHHHHhCCeE
Q 018998 177 QLEWSLWT--R------------DVEEDIIPTCRELGIGI 202 (347)
Q Consensus 177 q~~~n~~~--~------------~~~~~l~~~~~~~gi~v 202 (347)
.+..+.-+ . ..-...++++++.|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44333322 1 01146899999999998
No 56
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=55.14 E-value=65 Score=26.26 Aligned_cols=63 Identities=8% Similarity=0.158 Sum_probs=44.9
Q ss_pred CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeccCCCCCCHHHHHHHHHHHHHc
Q 018998 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD--VDCIDLYYQHRIDTQTPIEVTIGELKKLVEE 148 (347)
Q Consensus 77 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~ 148 (347)
.|=-+.|+-|++. ...+..|++.+.++.+... ....|++++.......+..+....|..+.++
T Consensus 46 ~RlG~sVSKKvg~---------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK---------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc---------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3555677777663 3467788888888888764 3468999999988776777776666666554
No 57
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=54.97 E-value=40 Score=31.25 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeccCCC----CCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC-CCeeEE
Q 018998 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDT----QTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAV 176 (347)
Q Consensus 102 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~----~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 176 (347)
.+.+++.+.+-+++.|+|++=++.+-.-.. .....+.+++|++..+++.-. .++..+...... ....+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f- 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF- 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE-
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe-
Confidence 456788899999999988543333322221 112235688888888876532 223333222211 33222
Q ss_pred eeeccccccchhhchHHHHHHhCCeEEEc---ccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHH
Q 018998 177 QLEWSLWTRDVEEDIIPTCRELGIGIVAY---SPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEI 253 (347)
Q Consensus 177 q~~~n~~~~~~~~~l~~~~~~~gi~via~---~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~i 253 (347)
+++.+-.-.....+.+.++++|+.++.- ++++.++ .--+-++.++
T Consensus 204 -vN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAApl-------------------------------vlDLirl~~l 251 (295)
T PF07994_consen 204 -VNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAPL-------------------------------VLDLIRLAKL 251 (295)
T ss_dssp -EE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHHH-------------------------------HHHHHHHHHH
T ss_pred -EeccCccccCCHHHHHHHHHcCCCeecchHhhhhhhHH-------------------------------HHHHHHHHHH
Confidence 2333322221358999999999998762 2333222 2233478899
Q ss_pred HHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHH
Q 018998 254 AANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANL 288 (347)
Q Consensus 254 a~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l 288 (347)
|.+.|..-.+-.++|.+..|. +=.|......+
T Consensus 252 a~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 252 ALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 999999888999999999996 22566555555
No 58
>PLN02363 phosphoribosylanthranilate isomerase
Probab=54.91 E-value=35 Score=30.98 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeee
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLE 179 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 179 (347)
+.+.++. ..++|.|++=+++........+.+.+-+.... .....++.+||. |.+++.+.++.+...++++|++
T Consensus 56 ~~eda~~-----a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAM-----AVEAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 4455544 34589999999755443344444444333333 332246679985 7789999999988999999986
Q ss_pred c
Q 018998 180 W 180 (347)
Q Consensus 180 ~ 180 (347)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 59
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.07 E-value=1.7e+02 Score=26.43 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHH-HHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEee
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTI-GELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQL 178 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 178 (347)
.+++.+.+..++.++ -|.|+||+=. .|.. .+.++.+ ..+..+++.-. .-|.|.+++++.++++++...=..+-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 456667766666654 4999999865 2432 2223333 33232332212 237788899999999887621122223
Q ss_pred ecccccc-chhhchHHHHHHhCCeEEEcccCCCC
Q 018998 179 EWSLWTR-DVEEDIIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 179 ~~n~~~~-~~~~~l~~~~~~~gi~via~~pl~~G 211 (347)
..+.... .....+++.+++.|..++.+..-..|
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3343321 11246888999999999987543333
No 60
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=53.82 E-value=1.9e+02 Score=26.99 Aligned_cols=153 Identities=17% Similarity=0.106 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~ 114 (347)
+.++..+.+....+.|++.|=.-- +. ..+.-+=+++++.. .++.|.-=.. ..++.+..+ .-+.|+
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN---------~~~~~~~a~--~~~~l~ 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN---------ESYDLQDFP--RLKELD 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC---------CCCCHHHHH--HHHHHh
Confidence 446677777888899999873211 11 12222333444422 2222222221 123444432 123333
Q ss_pred HcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchH
Q 018998 115 RLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDII 192 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~ 192 (347)
. .++.++-.|-. .+.++.+.+|++...+. +.|=|.++...+..++....++++|+....+-. ..-..+.
T Consensus 197 ~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~ 267 (324)
T TIGR01928 197 R-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAI 267 (324)
T ss_pred h-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHH
Confidence 3 35556665543 34467788888876664 667788899999999998889999987765432 1125799
Q ss_pred HHHHHhCCeEEEcccCCCC
Q 018998 193 PTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 193 ~~~~~~gi~via~~pl~~G 211 (347)
..|+.+|+.++..+.+..|
T Consensus 268 ~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 268 ETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHcCCeEEEcceEccc
Confidence 9999999999887655544
No 61
>smart00642 Aamy Alpha-amylase domain.
Probab=53.48 E-value=17 Score=30.54 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=18.7
Q ss_pred hhchHHHHHHhCCeEEEcccCCC
Q 018998 188 EEDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 188 ~~~l~~~~~~~gi~via~~pl~~ 210 (347)
-+.+++.||++||.|+.=-++..
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
Confidence 36899999999999998655554
No 62
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=53.35 E-value=1.9e+02 Score=28.84 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHC-CCCeeeCcCCcCCCc---hHHHHHHH--hhc-CCCCCeEEEeecCcc-------------ccC
Q 018998 34 KPEPDMIALIRHAINS-GITFLDTSDIYGPHT---NEILLGKA--FKG-GFRERAELATKFGIG-------------IVD 93 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~G~---sE~~lG~a--L~~-~~R~~~~i~tK~~~~-------------~~~ 93 (347)
.+.+...++++++++. +++.=|.+.-+.... -|.+...| ++. ..-+.+++.+=+... ..+
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 3566788888888863 666555554443211 22222222 222 122334443332210 001
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHH----cCCcceEecC--cchHHHHHH
Q 018998 94 G-KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVE----EGKIKYIGLS--EASASTIRR 166 (347)
Q Consensus 94 ~-~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~----~G~ir~iGvS--~~~~~~l~~ 166 (347)
. ...+..+.+.|.+.++. ++..|...+-|+.=..| ...+++.+.+.++.+++ .|.++.++|+ ..+.+++++
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 1 12245678999998875 57788777766422222 33456766777777775 4677776664 467788888
Q ss_pred HhcCC--CeeEEeeeccc-----ccc-----chh--hchHHHHHHhCCeEEEcccC
Q 018998 167 AHAVH--PITAVQLEWSL-----WTR-----DVE--EDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 167 ~~~~~--~~~~~q~~~n~-----~~~-----~~~--~~l~~~~~~~gi~via~~pl 208 (347)
+.+.+ .+..+|-.||. ++. .++ -..++.+++.|+.-++.+.|
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 87763 44555655542 111 111 25888899999985554433
No 63
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=52.44 E-value=1.4e+02 Score=28.17 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHcCCCccceEeecc-CCC-CCCHHHHHHHHHHHHHcCCcce-EecCcc---hHHHHHHHhcCCC-eeEEeeecccccc
Q 018998 113 LKRLDVDCIDLYYQHR-IDT-QTPIEVTIGELKKLVEEGKIKY-IGLSEA---SASTIRRAHAVHP-ITAVQLEWSLWTR 185 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~-p~~-~~~~~~~~~~L~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~-~~~~q~~~n~~~~ 185 (347)
-+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|.. +++.++..++... -..+....+. -
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~--e 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE--D 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH--H
Confidence 3578888888854332 222 2233444455555444333322 555532 7788887766422 1112111121 1
Q ss_pred chhhchHHHHHHhCCeEEEcccCC
Q 018998 186 DVEEDIIPTCRELGIGIVAYSPLG 209 (347)
Q Consensus 186 ~~~~~l~~~~~~~gi~via~~pl~ 209 (347)
+ -+.+.+.|++.|..+++.+|..
T Consensus 163 n-~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 163 N-YKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H-HHHHHHHHHHhCCeEEEEcHHH
Confidence 2 2579999999999999977443
No 64
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.09 E-value=24 Score=28.47 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=20.8
Q ss_pred cchhhchHHHHHHhCCeEEEcccCC
Q 018998 185 RDVEEDIIPTCRELGIGIVAYSPLG 209 (347)
Q Consensus 185 ~~~~~~l~~~~~~~gi~via~~pl~ 209 (347)
+..-.++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3444789999999999999987766
No 65
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=51.94 E-value=1.6e+02 Score=26.86 Aligned_cols=66 Identities=15% Similarity=0.039 Sum_probs=39.1
Q ss_pred HHHHHHHcCCcceEec--CcchHHHHHHHhcC-CCeeEEeeeccccccchhhchHHHHHHhCCeEEEccc
Q 018998 141 ELKKLVEEGKIKYIGL--SEASASTIRRAHAV-HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSP 207 (347)
Q Consensus 141 ~L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~p 207 (347)
.|.+..++|+. .+|+ .-.++...+.+... ..+.++-.++++++......++..++..|+..+.+-|
T Consensus 8 ~lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 8 PFKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 35555566775 3443 22344444433333 3445556678888776556788888888888777554
No 66
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=51.68 E-value=63 Score=33.30 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=48.6
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeeecc
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 181 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 181 (347)
...+|.|++=+++........+.+.....+.+......+..+||- |.+++.+.++.+...++++|++-.
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 356899999998766555555556523333333333357789995 778999999988899999998754
No 67
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=51.17 E-value=1.5e+02 Score=26.66 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCC-----CCCHHHHHHHHHHHHHc-CCcceEecC---cchHHHHHHHhc
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----QTPIEVTIGELKKLVEE-GKIKYIGLS---EASASTIRRAHA 169 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~~L~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 169 (347)
.++.+.. ..+-+.|.++|+++|.+-+...... .......++.++.+++. +.++...+. ......++.+.+
T Consensus 18 ~~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 3455544 4456669999999999976532110 01111245555555443 345655553 224566766665
Q ss_pred CCCeeEEeeeccccccchhhchHHHHHHhCCeEEEc
Q 018998 170 VHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 170 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~ 205 (347)
. .++.+.+-++.-+-..-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4566655444332222357889999999876553
No 68
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=50.97 E-value=1.4e+02 Score=27.46 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHH
Q 018998 248 ECVNEIAANKGC------TPSQLALAWVHHQGDDVCPIPGTTKIANLNENI 292 (347)
Q Consensus 248 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl 292 (347)
.+|.++|+++|. ++.++-..|.-.... ..+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 478899988874 778888899877653 67779999999886654
No 69
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=50.51 E-value=2.3e+02 Score=26.89 Aligned_cols=84 Identities=8% Similarity=0.044 Sum_probs=58.6
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhC
Q 018998 122 DLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELG 199 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 199 (347)
++.++-.|-+. +.++.+.+|+++..+. +.|=+.++...+..+++...++++|+....+-. ..-..+...|+++|
T Consensus 215 ~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 215 GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 44455555432 3467788888876665 566677788999999888888999887665421 12357899999999
Q ss_pred CeEEEcccCC
Q 018998 200 IGIVAYSPLG 209 (347)
Q Consensus 200 i~via~~pl~ 209 (347)
+.++..+-+.
T Consensus 291 i~~~~~~~~~ 300 (365)
T cd03318 291 IALYGGTMLE 300 (365)
T ss_pred CceeecCcch
Confidence 9988654443
No 70
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=50.50 E-value=1.4e+02 Score=25.66 Aligned_cols=145 Identities=12% Similarity=-0.016 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcC----CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGG----FRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
|.+++.++++.+++.|++..|.- +..+..+++.. .+++++++-- ....+.+++.+.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~------------~~a~~~~~~~l~ 69 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV------------MMSADAMLAGIK 69 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH------------HHHHHHHHHHHH
Confidence 77899999999999999776643 23444444431 3333433211 223455666666
Q ss_pred HHHHHcCCC----ccceEeeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCcchHHHHHHHhcCCCeeEEeeecccccc
Q 018998 111 ASLKRLDVD----CIDLYYQHRIDTQTPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR 185 (347)
Q Consensus 111 ~sL~~Lg~d----~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 185 (347)
.....+... .---+++-.+..+...-...=.-.-|+..|. |.++|.. -+.+.+.+.+....++++.+-+.....
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~~ 148 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTTT 148 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEccccccC
Confidence 655555421 1112233333322222222222233455664 5667854 466777777777777777765544332
Q ss_pred c-hhhchHHHHHHhCC
Q 018998 186 D-VEEDIIPTCRELGI 200 (347)
Q Consensus 186 ~-~~~~l~~~~~~~gi 200 (347)
. .-.++++.+++.|.
T Consensus 149 ~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 149 MYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 1 12578888888854
No 71
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=50.19 E-value=1.1e+02 Score=29.96 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeec-cCCC-----------CCCHH---HHHHH-HHHHHHcCCcceEecCcchH
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQH-RIDT-----------QTPIE---VTIGE-LKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH-~p~~-----------~~~~~---~~~~~-L~~l~~~G~ir~iGvS~~~~ 161 (347)
+.+.+++.+++.+ .|+.|+|.+|.|- -|.. ..+.+ +.++. .+.|.+.|- +.+|+|||..
T Consensus 202 T~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 202 TLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 5677777777765 4779999999763 3311 11112 33443 455566677 9999999875
No 72
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=50.04 E-value=1.8e+02 Score=25.96 Aligned_cols=83 Identities=8% Similarity=0.009 Sum_probs=45.4
Q ss_pred ccceEeeccCCCCCCH-HHHHHHHHHHHHcCCcceEecCc-chHHHHHHHhcCCCeeEEeeeccccccc-hhhchHHHHH
Q 018998 120 CIDLYYQHRIDTQTPI-EVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWTRD-VEEDIIPTCR 196 (347)
Q Consensus 120 ~iDl~~lH~p~~~~~~-~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~ 196 (347)
.+|-+.+|..+..... .-.|+.+.++.+.-.+.-|.-.. .+.+++.++.+...++.+.+---+.... .-.++.+.|+
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Confidence 3456677765432111 11366667777655555554443 3667777777654455554422222211 2257888998
Q ss_pred HhCCeE
Q 018998 197 ELGIGI 202 (347)
Q Consensus 197 ~~gi~v 202 (347)
+.|+.+
T Consensus 246 ~~~~~~ 251 (253)
T PRK02083 246 EQGIPV 251 (253)
T ss_pred HCCCcc
Confidence 888764
No 73
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=49.52 E-value=2.7e+02 Score=27.45 Aligned_cols=85 Identities=9% Similarity=0.081 Sum_probs=57.1
Q ss_pred eEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCe
Q 018998 123 LYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIG 201 (347)
Q Consensus 123 l~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 201 (347)
+.++-.|-+..+..+.++.|.+|++...|- ..|=+.++...++.+++...++++|......--..-..+.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 445666654332112377788887776653 4466677888999998888888888876422111135799999999999
Q ss_pred EEEccc
Q 018998 202 IVAYSP 207 (347)
Q Consensus 202 via~~p 207 (347)
+..++.
T Consensus 332 v~~h~~ 337 (441)
T TIGR03247 332 WGSHSN 337 (441)
T ss_pred EEEeCC
Confidence 887654
No 74
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=49.08 E-value=37 Score=33.60 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=45.5
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeeecc
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 181 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 181 (347)
...+|.|++=+++........+.+.+-+....+. ++.+||- |-+++.+.++.+...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4568999988875444334444444433333332 8889997 678999999988899999998764
No 75
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=49.00 E-value=24 Score=27.10 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=39.2
Q ss_pred CcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhCCeEEEccc
Q 018998 157 SEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELGIGIVAYSP 207 (347)
Q Consensus 157 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~via~~p 207 (347)
+.++...++++++...++++|+.....-. ..-..+.+.|+++|+.+..++.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45678889999998888999987655421 1235899999999999999886
No 76
>PRK09061 D-glutamate deacylase; Validated
Probab=48.51 E-value=1.6e+02 Score=29.65 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 018998 38 DMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD 117 (347)
Q Consensus 38 ~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg 117 (347)
++.++++.|++.|+..|=+...|..+.+...+-+.++...+-+..|...+..... .++.....++++.++...
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~-------~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN-------VDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc-------CCchhHHHHHHHHHHHHH
Confidence 4788889999999999987666755556666666665544445667666543210 011222334444444332
Q ss_pred CCccceEeeccCCCC-CCHHHHHHHHHHHHHcCCcc
Q 018998 118 VDCIDLYYQHRIDTQ-TPIEVTIGELKKLVEEGKIK 152 (347)
Q Consensus 118 ~d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~G~ir 152 (347)
.--.-+.+.|-.... ....+.++.+++++++|.--
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~V 278 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDV 278 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcE
Confidence 222346666765422 24567788888888888433
No 77
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=48.00 E-value=1.6e+02 Score=26.47 Aligned_cols=67 Identities=9% Similarity=-0.067 Sum_probs=38.6
Q ss_pred HHHHHHcCCcceEec--CcchHHHHHHHhcC-CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCC
Q 018998 142 LKKLVEEGKIKYIGL--SEASASTIRRAHAV-HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLG 209 (347)
Q Consensus 142 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~ 209 (347)
|.+-.++|+. .+|+ .--++...+.+... ..+.++-.++++++...-..++..++..|+..+.+-|-.
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 3444455664 4454 22344444333332 344555567888776555678888888888877765443
No 78
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=47.64 E-value=83 Score=30.52 Aligned_cols=71 Identities=7% Similarity=-0.057 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhCCeEEEcccC
Q 018998 138 TIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 138 ~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~via~~pl 208 (347)
.++.+.+|++.-.+. +.|=|.++...++++++...++++|+...-.-. ..-..+.+.|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 467788888876665 667777899999999998889999987665321 12357999999999999886543
No 79
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=47.57 E-value=27 Score=24.09 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Q 018998 249 CVNEIAANKGCTPSQLALAWVHH 271 (347)
Q Consensus 249 ~l~~ia~~~g~s~~qlal~~~l~ 271 (347)
...+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999853
No 80
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.66 E-value=1.2e+02 Score=27.20 Aligned_cols=112 Identities=17% Similarity=0.044 Sum_probs=61.2
Q ss_pred cCcceeccccccccCCCCCCHHHHHHHHHHHH-HCCCCeeeCcCC---cCCCchHHHHHHHhhcCCCCCeEEEeecCccc
Q 018998 16 VSAQGLGCMGMSALYGPPKPEPDMIALIRHAI-NSGITFLDTSDI---YGPHTNEILLGKAFKGGFRERAELATKFGIGI 91 (347)
Q Consensus 16 vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~---Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~ 91 (347)
-|+|-+||..+. +.+ ++..|+ .+|-..+=+|=- .+....+..+ +.-.+++++.+--...
T Consensus 8 ~SRL~lGTgky~-------s~~----~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~---~~~i~~~~~~lLPNTa--- 70 (247)
T PF05690_consen 8 RSRLILGTGKYP-------SPE----VMREAIEASGAEVVTVALRRVNLGSKPGGDNI---LDYIDRSGYTLLPNTA--- 70 (247)
T ss_dssp S-SEEEE-STSS-------SHH----HHHHHHHHTT-SEEEEECCGSTTTS-TTCHHC---CCCTTCCTSEEEEE-T---
T ss_pred ecceEEecCCCC-------CHH----HHHHHHHHhCCcEEEEEEecccCCCCCCCccH---HHHhcccCCEECCcCC---
Confidence 378999998862 334 455555 446666544421 1100011222 2223556665554432
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCC-CHHHHHHHHHHHHHcCC
Q 018998 92 VDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT-PIEVTIGELKKLVEEGK 150 (347)
Q Consensus 92 ~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ 150 (347)
...+++.-.+..+-..+-++++.|=+=.+..+.... +..+++++-++|+++|-
T Consensus 71 ------Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF 124 (247)
T PF05690_consen 71 ------GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGF 124 (247)
T ss_dssp ------T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-
T ss_pred ------CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCC
Confidence 134677777888888999999988877666665543 45699999999999985
No 81
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=46.62 E-value=81 Score=27.51 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=56.2
Q ss_pred HHHHHHHHH--HcCCCccceEeec-cCCCC-CCHHHH----HHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEe
Q 018998 106 RAACEASLK--RLDVDCIDLYYQH-RIDTQ-TPIEVT----IGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 106 ~~~v~~sL~--~Lg~d~iDl~~lH-~p~~~-~~~~~~----~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (347)
...+++..+ .-|.|+||+=--- +|... .+.++- ...++.+++..-=--+.+-++.++.++++++. ..+++-
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~in 97 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIIN 97 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEE
Confidence 334444433 4489999995432 23222 222333 44455555411112567778899999998877 434432
Q ss_pred eeccccccchhhchHHHHHHhCCeEEEcccC
Q 018998 178 LEWSLWTRDVEEDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 178 ~~~n~~~~~~~~~l~~~~~~~gi~via~~pl 208 (347)
. .......+++++.+++.|..++++..-
T Consensus 98 d---~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 98 D---ISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp E---TTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred e---cccccccchhhhhhhcCCCEEEEEecc
Confidence 2 222111468999999999999996554
No 82
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=46.48 E-value=95 Score=31.37 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeccCCCC---CCHHHHHHHHHHHHHcCCcceEec----Ccc--hHHHHHHHhcCCCe
Q 018998 103 AYVRAACEASLKRLDVDCIDLYYQHRIDTQ---TPIEVTIGELKKLVEEGKIKYIGL----SEA--SASTIRRAHAVHPI 173 (347)
Q Consensus 103 ~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~---~~~~~~~~~L~~l~~~G~ir~iGv----S~~--~~~~l~~~~~~~~~ 173 (347)
+...+-++..++..+-.+.+ -|-.-.. ..+.+..+-|.+++++|+||.+.+ ++- ....+..+.+..+=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 56788899999999877777 2222111 123456678899999999998744 221 11234444444443
Q ss_pred eEEeeeccccccchhhchHHHHHHhCCeEE
Q 018998 174 TAVQLEWSLWTRDVEEDIIPTCRELGIGIV 203 (347)
Q Consensus 174 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~vi 203 (347)
|++-+ +..+....-..++.|...||+-+
T Consensus 437 D~lVL--t~GCgk~~~~~~~vc~~lGIPpV 464 (576)
T COG1151 437 DILVL--TLGCGKYRFNKADVGDILGIPRV 464 (576)
T ss_pred ceEEE--ecccchhhhhhhccccccCCCcc
Confidence 44432 22222222234478888888733
No 83
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=46.21 E-value=2.7e+02 Score=26.86 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCCC--eeEEeeeccccccc----hhhchHHHHHHhCCeEEEcccCC
Q 018998 160 SASTIRRAHAVHP--ITAVQLEWSLWTRD----VEEDIIPTCRELGIGIVAYSPLG 209 (347)
Q Consensus 160 ~~~~l~~~~~~~~--~~~~q~~~n~~~~~----~~~~l~~~~~~~gi~via~~pl~ 209 (347)
+-+++++...... .-+.=.+.|+.-+- ....+.+.|+++||.||+=-..+
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccc
Confidence 4455555444332 22222345554432 22579999999999999844433
No 84
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.44 E-value=1.9e+02 Score=25.51 Aligned_cols=150 Identities=10% Similarity=-0.009 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccc-------cCCC-CCCCCCHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGI-------VDGK-YGYHGDPAYVR 106 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~-------~~~~-~~~~~~~~~i~ 106 (347)
+.+++.+++ +.|+..+..+...-. +-..+.+..+....+++.++.-+.... .++. .....+..
T Consensus 82 s~~d~~~~l----~~G~~~v~ig~~~~~--~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~--- 152 (243)
T cd04731 82 SLEDARRLL----RAGADKVSINSAAVE--NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAV--- 152 (243)
T ss_pred CHHHHHHHH----HcCCceEEECchhhh--ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHH---
Confidence 445554444 468888877654432 334555555544334455443211000 0000 00011111
Q ss_pred HHHHHHHHHcCCCccceEeeccCCCCCCHH-HHHHHHHHHHHcCCcceEecCc-chHHHHHHHhcCCCeeEEeeeccccc
Q 018998 107 AACEASLKRLDVDCIDLYYQHRIDTQTPIE-VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWT 184 (347)
Q Consensus 107 ~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~ 184 (347)
.+-+.++.+|. |.+.+|..+...... -.++.+.++++.-.+.-|..-. .+++.+.++.+...++.+++---+..
T Consensus 153 -~~~~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 153 -EWAKEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred -HHHHHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 12234455565 556666654422111 1355566666554555554443 35677777776655556555333322
Q ss_pred cc-hhhchHHHHHH
Q 018998 185 RD-VEEDIIPTCRE 197 (347)
Q Consensus 185 ~~-~~~~l~~~~~~ 197 (347)
.. .-+++.++|++
T Consensus 229 ~~~~~~~~~~~~~~ 242 (243)
T cd04731 229 GEYTIAELKEYLAE 242 (243)
T ss_pred CCCCHHHHHHHHhh
Confidence 22 12345555554
No 85
>PRK06424 transcription factor; Provisional
Probab=45.42 E-value=78 Score=26.01 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=40.8
Q ss_pred hhchHHHHHHhCCeEEEc---ccCCC--CcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHH
Q 018998 188 EEDIIPTCRELGIGIVAY---SPLGR--GFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPS 262 (347)
Q Consensus 188 ~~~l~~~~~~~gi~via~---~pl~~--G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 262 (347)
+-.+-+.|.+-|..|..+ +|... -..+++.............+..-.+.....+......+.+..+.++.|+|..
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~ 101 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKASDEDLDIVEDYAELVKNARERLSMSQA 101 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCcccHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 346888899999999998 55543 1111010000000000000000000011112234455677777888899999
Q ss_pred HHHHHHHH
Q 018998 263 QLALAWVH 270 (347)
Q Consensus 263 qlal~~~l 270 (347)
+||-+--.
T Consensus 102 eLA~~iGv 109 (144)
T PRK06424 102 DLAAKIFE 109 (144)
T ss_pred HHHHHhCC
Confidence 99955433
No 86
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.95 E-value=2.2e+02 Score=25.87 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCH------HHHHHHHHHHHH-cCCcceEecCcchHHHHHHHh
Q 018998 96 YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPI------EVTIGELKKLVE-EGKIKYIGLSEASASTIRRAH 168 (347)
Q Consensus 96 ~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~------~~~~~~L~~l~~-~G~ir~iGvS~~~~~~l~~~~ 168 (347)
....++.+...+-++. |.++|+|+|++-+.......... .+.++.+..+.+ .-++..+.-........-...
T Consensus 13 ~~~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 13 NNWDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred cCccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Q ss_pred cCCCeeEEeeeccccccchhhchHHHHHHhCCeEEE
Q 018998 169 AVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 169 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via 204 (347)
....++.+.+.+..-.-..-.+.+++++++|+.+..
T Consensus 92 ~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 92 SGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred hcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
No 87
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=44.84 E-value=2.6e+02 Score=25.98 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHh
Q 018998 248 ECVNEIAANKGC------TPSQLALAWVHHQGDDVCPIPGTTKIANLNENIE 293 (347)
Q Consensus 248 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~ 293 (347)
.+|.++|++++. ++.++-..|+.... ...+..|+|+|+.+-+.+.
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHHH
Confidence 378899988874 77899999996654 4667799999998766543
No 88
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=44.56 E-value=2.4e+02 Score=25.47 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEe-eccCCCC-CCHH-H---HHHHHHHHHHc-CCcceEecCcchHHHHHHHhcCCC
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYY-QHRIDTQ-TPIE-V---TIGELKKLVEE-GKIKYIGLSEASASTIRRAHAVHP 172 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lH~p~~~-~~~~-~---~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 172 (347)
.+++.+.+.+++.+ .-|.++||+=- --+|+.. .+.+ | ....++.+++. +. -+.+-++.++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35555555544443 45899999932 2234332 1223 2 44555556555 43 37888899999999988743
Q ss_pred eeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHH
Q 018998 173 ITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNE 252 (347)
Q Consensus 173 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ 252 (347)
+.+ +..+... .+++++.+++.|..++.+.- .|.-. ..+ ..+.+ ....+.....++...+
T Consensus 97 -~iI-Nsis~~~---~~~~~~l~~~~~~~vV~m~~--~g~p~----~~~---------~~~~~-~~~~~~~~~~~~~~i~ 155 (257)
T TIGR01496 97 -DII-NDVSGGQ---DPAMLEVAAEYGVPLVLMHM--RGTPR----TMQ---------ENPHY-EDVVEEVLRFLEARAE 155 (257)
T ss_pred -CEE-EECCCCC---CchhHHHHHHcCCcEEEEeC--CCCCc----ccc---------cCCCc-ccHHHHHHHHHHHHHH
Confidence 322 2223322 35799999999999999442 23111 000 01111 1113445555666666
Q ss_pred HHHHhCCCHHHH
Q 018998 253 IAANKGCTPSQL 264 (347)
Q Consensus 253 ia~~~g~s~~ql 264 (347)
.+.+.|+...++
T Consensus 156 ~~~~~Gi~~~~i 167 (257)
T TIGR01496 156 ELVAAGVAAERI 167 (257)
T ss_pred HHHHcCCCHHHE
Confidence 778888754444
No 89
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.15 E-value=82 Score=24.20 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCC----------CCCCCCCHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG----------KYGYHGDPAY 104 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~----------~~~~~~~~~~ 104 (347)
|..-....---++++|-=|+-|-..|.-| .|-.+---|-+ ..+++.+++|+.+...-+ .+..+-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 44444555555679999999999999875 45555444433 467899999995432111 1222233356
Q ss_pred HHHHHHHHHHH
Q 018998 105 VRAACEASLKR 115 (347)
Q Consensus 105 i~~~v~~sL~~ 115 (347)
+++++|..|..
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 88888887754
No 90
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=44.09 E-value=47 Score=21.44 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcCC
Q 018998 250 VNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV 297 (347)
Q Consensus 250 l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~~ 297 (347)
+.+||+..|+|++.+. .+|+.+. -+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 6789999999998876 4555542 4555666777766666554
No 91
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.64 E-value=1.9e+02 Score=27.84 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=56.2
Q ss_pred EeeccCCCCCCHHHHHHHHHHHHHc------CCcceEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHH
Q 018998 124 YYQHRIDTQTPIEVTIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCR 196 (347)
Q Consensus 124 ~~lH~p~~~~~~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~ 196 (347)
+++-.|-+..+.++.++.+.+|++. +.=-..|=+.++...+.++++....+++|+..+-.-. ..-..+.+.|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 3455554333322446677777766 2223456667788899999888888999988775432 12357999999
Q ss_pred HhCCeEEEccc
Q 018998 197 ELGIGIVAYSP 207 (347)
Q Consensus 197 ~~gi~via~~p 207 (347)
.+|+.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998654
No 92
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.70 E-value=1.8e+02 Score=26.10 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=34.6
Q ss_pred hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCC
Q 018998 189 EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCT 260 (347)
Q Consensus 189 ~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s 260 (347)
...+++|+..|...+...|...|... ...+.++...+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT--------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC--------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46889999999999877664433110 00112355667778888889999874
No 93
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=42.64 E-value=2.7e+02 Score=25.54 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHCC-CCeeeC---cCCc-----CCCchHHHHHHHhhcCCC-CCeEEEeecCccccCCCCCCCCCHHH
Q 018998 35 PEPDMIALIRHAINSG-ITFLDT---SDIY-----GPHTNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAY 104 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~Y-----g~G~sE~~lG~aL~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~ 104 (347)
+.++..+..+.+-++| +..||. +++. ..+...+.+-+.++...+ -++-|..|+.... +.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-----------~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV-----------TD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc-----------hh
Confidence 5677888888888998 999986 2221 223356666666655321 1577889986431 12
Q ss_pred HHHHHHHHHHHcCCCccceEe-eccC--CCC----------------CCHHHHHHHHHHHHHcCCcceEecCcc-hHHHH
Q 018998 105 VRAACEASLKRLDVDCIDLYY-QHRI--DTQ----------------TPIEVTIGELKKLVEEGKIKYIGLSEA-SASTI 164 (347)
Q Consensus 105 i~~~v~~sL~~Lg~d~iDl~~-lH~p--~~~----------------~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l 164 (347)
+. .+-+.++..|.|.|++.= ++.. +.. ....-.++.+.++++.=.+--||+... +++.+
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 234457778887776531 1111 000 000113566666666556788888875 78888
Q ss_pred HHHhcCCCeeEEeeeccccc-c----chhhchHHHHHHhCCe
Q 018998 165 RRAHAVHPITAVQLEWSLWT-R----DVEEDIIPTCRELGIG 201 (347)
Q Consensus 165 ~~~~~~~~~~~~q~~~n~~~-~----~~~~~l~~~~~~~gi~ 201 (347)
.+++... .+.+|+---++. . ...+++-.+..++|..
T Consensus 250 ~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 250 IEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 8887654 577776433322 1 1224566666666653
No 94
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=42.44 E-value=3.6e+02 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=11.3
Q ss_pred hchHHHHHHhCCeEEEcc
Q 018998 189 EDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 189 ~~l~~~~~~~gi~via~~ 206 (347)
+++++..++.|+..+..+
T Consensus 287 ~ell~~l~~aG~~~v~iG 304 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLG 304 (497)
T ss_pred HHHHHHHHHhCCcEEEEc
Confidence 456777777776655543
No 95
>PRK14017 galactonate dehydratase; Provisional
Probab=41.86 E-value=1.1e+02 Score=29.36 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhCCeEEEccc
Q 018998 139 IGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELGIGIVAYSP 207 (347)
Q Consensus 139 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~via~~p 207 (347)
++.+.+|++...+. ..|=|.++...+..+++...++++|+..+..-. ..-..+.+.|+.+|+.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 57788888877665 566677899999999988888999987665421 2235899999999999888754
No 96
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.60 E-value=37 Score=30.32 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=48.3
Q ss_pred CCCcccCcceeccccccccCCCC--CCHHHHHHHHHHH----HHCCCCeeeCcC--CcCCCchHHHHHHHhhc-------
Q 018998 11 SQGLEVSAQGLGCMGMSALYGPP--KPEPDMIALIRHA----INSGITFLDTSD--IYGPHTNEILLGKAFKG------- 75 (347)
Q Consensus 11 ~tg~~vs~l~lG~~~~g~~~~~~--~~~~~~~~~l~~A----~~~Gi~~~DtA~--~Yg~G~sE~~lG~aL~~------- 75 (347)
.+|+.+|.+||.+=+= -.+|+. .-++++..++..| .+.|||.|-.|. .|=...+|....+++.+
T Consensus 65 etgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 5799999999987551 012333 1245666666665 578999999885 33222355666666554
Q ss_pred CCCCCeEEEeecC
Q 018998 76 GFRERAELATKFG 88 (347)
Q Consensus 76 ~~R~~~~i~tK~~ 88 (347)
..+..+.++..+-
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 1566777776653
No 97
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.31 E-value=2.5e+02 Score=28.09 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcce----EecCcchHHHHHHHhcC---CCeeEEeeeccccccchhhchHHHHHHhCC
Q 018998 130 DTQTPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV---HPITAVQLEWSLWTRDVEEDIIPTCRELGI 200 (347)
Q Consensus 130 ~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 200 (347)
......++..++++.+++.|..-. +|+-+.+.+.+++.++. ..++.+ .++++...+...+.+.+++.+.
T Consensus 317 ~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~--~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 317 RKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQA--NWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCce--EEEEecCCCCcHHHHHHHhhcc
Confidence 334556788899999999986433 57777777776654432 333433 3455555556678888877754
No 98
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.09 E-value=2.7e+02 Score=25.05 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCcceEecCcchHHH-------HHHHhcC---C---CeeEEeeeccccccchhhchHHHHHHhCC
Q 018998 134 PIEVTIGELKKLVEEGKIKYIGLSEASAST-------IRRAHAV---H---PITAVQLEWSLWTRDVEEDIIPTCRELGI 200 (347)
Q Consensus 134 ~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~-------l~~~~~~---~---~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 200 (347)
+.++..+.++..+++ ---++|+.||--.. ++.+++. . .+|..-+.- .-.-..+++-||
T Consensus 104 s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~r~l~flDs~T~a~--------S~a~~iAk~~gV 174 (250)
T COG2861 104 SAEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNEDAMEKLMEALKERGLYFLDSGTIAN--------SLAGKIAKEIGV 174 (250)
T ss_pred CHHHHHHHHHHHHhh-CccceeehhhhhhhhcCcHHHHHHHHHHHHHCCeEEEccccccc--------chhhhhHhhcCC
Confidence 346777777766554 33578999874322 2222211 1 111111111 112234567777
Q ss_pred eEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCC
Q 018998 201 GIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGC 259 (347)
Q Consensus 201 ~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~ 259 (347)
.++....|-.+-.+ -......++++..+|+++|.
T Consensus 175 p~~~rdvfLD~e~~-------------------------~~~V~kql~~~~~~Ark~G~ 208 (250)
T COG2861 175 PVIKRDVFLDDEDT-------------------------EAAVLKQLDAAEKLARKNGS 208 (250)
T ss_pred ceeeeeeeecCcCC-------------------------HHHHHHHHHHHHHHHHhcCc
Confidence 77777766654322 24566777888999998874
No 99
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=40.77 E-value=2.1e+02 Score=28.25 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeecc
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR 128 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~ 128 (347)
-+.+.+++.++..++ |+.++|++|.|.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 356677777666553 8888998887753
No 100
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=40.48 E-value=66 Score=23.46 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 018998 241 EHNQKLFECVNEIAANKGCTPSQLALAW 268 (347)
Q Consensus 241 ~~~~~~~~~l~~ia~~~g~s~~qlal~~ 268 (347)
++..+.+.+|.++|++.|++..++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5678888999999999999999998644
No 101
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.44 E-value=3.1e+02 Score=25.60 Aligned_cols=109 Identities=17% Similarity=0.067 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCCC-CHHHHHHHHHHHHHcCCcceEecCc---------chHHHHHHHhcC
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT-PIEVTIGELKKLVEEGKIKYIGLSE---------ASASTIRRAHAV 170 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 170 (347)
+.+.+.+.++...+..+ |.-+.|-.=++.. +.....+.++++++.|.|+.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34455555544333322 3334454444443 2356777888888888776444432 344455555554
Q ss_pred CCeeEEeeeccccc--cchhhchHHHHHHhCCeEEEcccCCCCc
Q 018998 171 HPITAVQLEWSLWT--RDVEEDIIPTCRELGIGIVAYSPLGRGF 212 (347)
Q Consensus 171 ~~~~~~q~~~n~~~--~~~~~~l~~~~~~~gi~via~~pl~~G~ 212 (347)
.....+.++.|-.. ...-...++.+++.|+.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 42233444443111 0111367788889999999999998874
No 102
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=40.25 E-value=2.9e+02 Score=25.11 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHCCCCeeeC---cCCcCCC----chHHHHHHHhhcCCCC-CeEEEeecCccccCCCCCCCCCHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDT---SDIYGPH----TNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPAYVR 106 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~Dt---A~~Yg~G----~sE~~lG~aL~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (347)
+.++..+..+.+.+.|+..||. +++...+ ...+.+.+.++...+. ++-|..|+... .+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------FDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------CCHHHHH
Confidence 5678888899999999999985 3332221 2345555555542211 56688898753 2344444
Q ss_pred HHHHHHHHHcCCCccceEeeccCCCCC----------------C------HHHHHHHHHHHHHcC--CcceEecCcc-hH
Q 018998 107 AACEASLKRLDVDCIDLYYQHRIDTQT----------------P------IEVTIGELKKLVEEG--KIKYIGLSEA-SA 161 (347)
Q Consensus 107 ~~v~~sL~~Lg~d~iDl~~lH~p~~~~----------------~------~~~~~~~L~~l~~~G--~ir~iGvS~~-~~ 161 (347)
+.++ .++..|.|. +.+|+-.... . ..-.++.+.++++.= .+--||+... ++
T Consensus 180 ~~a~-~l~~~Gad~---i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 180 ELAK-AAERAGADG---LTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHH-HHHHcCCCE---EEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 4333 466677654 4444321100 0 011345555555543 4666666553 45
Q ss_pred HHHHHHhcCCCeeEEee
Q 018998 162 STIRRAHAVHPITAVQL 178 (347)
Q Consensus 162 ~~l~~~~~~~~~~~~q~ 178 (347)
+.+.+++... .+.+|+
T Consensus 256 ~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 256 EDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHcC-ccHheE
Confidence 5666655533 455554
No 103
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=40.07 E-value=2.6e+02 Score=24.64 Aligned_cols=140 Identities=13% Similarity=0.116 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHCCCCeeeCcCCcCCC-chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHH
Q 018998 36 EPDMIALIRHAINSGITFLDTSDIYGPH-TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G-~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~ 114 (347)
.....+++..|.+.|+..+=.++|.... ..+. ....++ ++.|-+-+... ....+.+.. .++
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~~-----~i~Il~GiEi~--------~~~~~~~~~----~~~ 76 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDLL-----GFEIFRGVEIV--------ASNPSKLRG----LVG 76 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHhc-----CCcEEeeEEEe--------cCCHHHHHH----HHH
Confidence 4568899999999999988777664321 0111 111221 23332222211 123344333 333
Q ss_pred HcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-------hHHHHHHHhcCCCeeEEeeeccccccc-
Q 018998 115 RLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEA-------SASTIRRAHAVHPITAVQLEWSLWTRD- 186 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-------~~~~l~~~~~~~~~~~~q~~~n~~~~~- 186 (347)
+.. +.+|++.+| |.. +.+ ...+.+.+.|--||-... ....++.+.+.. ..+.+.++.+.+.
T Consensus 77 ~~~-~~~d~v~v~-~~~----~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g--v~lEIn~s~~~~~~ 145 (237)
T PRK00912 77 KFR-KKVDVLAVH-GGD----EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN--VAIEFNLRDILKSR 145 (237)
T ss_pred hcc-CcccEEEEe-CCC----HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC--eEEEEEchHhhhhc
Confidence 322 357888899 222 222 135677888887776532 222233333322 2344445433211
Q ss_pred ---------hhhchHHHHHHhCCeEEE
Q 018998 187 ---------VEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 187 ---------~~~~l~~~~~~~gi~via 204 (347)
....++..|++.|+.++.
T Consensus 146 ~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 146 GGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 114689999999988765
No 104
>TIGR00035 asp_race aspartate racemase.
Probab=40.06 E-value=1.5e+02 Score=26.14 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCC------------CCHHHHHHHHHHHHHcCCcceEecCcchHHH-HHHH
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ------------TPIEVTIGELKKLVEEGKIKYIGLSEASAST-IRRA 167 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~-l~~~ 167 (347)
+.+.+++-++..-.+.+.++++.+.+++|+.. .....+.+..+.|.+. .+.+|.+.+++... +.++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHHHHH
Confidence 45677888888888899999999999998542 1122455666666665 47999998877655 3344
Q ss_pred hc
Q 018998 168 HA 169 (347)
Q Consensus 168 ~~ 169 (347)
.+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 33
No 105
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=39.38 E-value=1.9e+02 Score=27.96 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCC-------------CCHHH---HH-HHHHHHHHcCCcceEecCcchH
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-------------TPIEV---TI-GELKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~-------------~~~~~---~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (347)
-+.+.+++.++..+ .|+.++|.++.|.--... .+.++ .+ .+.+.|.+.|-. .+++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 36677777777655 488899998877522110 11121 22 355667778874 578888753
No 106
>PRK06361 hypothetical protein; Provisional
Probab=39.19 E-value=2.5e+02 Score=24.15 Aligned_cols=185 Identities=14% Similarity=0.086 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHH---H---HhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLG---K---AFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG---~---aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
....++++.|.+.|+..+=.++|.....-...+- + .++....=+++.-.-+.. .....+ ..+.
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~----------~~~~~~-~~~~ 78 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH----------VPPKLI-PKLA 78 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc----------cCchhh-chHH
Confidence 4577899999999999998777754211111111 1 111111112222222221 112222 2233
Q ss_pred HHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-hHHHHHHHhcCCCeeEEeeeccccccchhh
Q 018998 111 ASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQLEWSLWTRDVEE 189 (347)
Q Consensus 111 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 189 (347)
+.+.+++ +|++.+|......+.. ...-.++.+.|.+.-+|=-.. ....++.+.+... .+.+......+....
T Consensus 79 ~~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~--~lEin~~~~~~~~~~ 151 (212)
T PRK06361 79 KKARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGV--FLEITARKGHSLTNG 151 (212)
T ss_pred HHHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe--EEEEECCCCcccchH
Confidence 4555554 4666899553322211 111144667787765554332 2233333333322 111111111222345
Q ss_pred chHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 018998 190 DIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAWV 269 (347)
Q Consensus 190 ~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~ 269 (347)
.+++.+++.|+.++.-+-... .+.. ...+.+..++++.|.+..++--.+.
T Consensus 152 ~~l~~a~~~gi~vv~~SDaH~-----------------------------~~d~-~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 152 HVARIAREAGAPLVINTDTHA-----------------------------PSDL-ITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHHhCCcEEEECCCCC-----------------------------HHHH-HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 799999999999776443331 0112 2457888999999999888764443
No 107
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=39.01 E-value=61 Score=21.39 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Q 018998 244 QKLFECVNEIAANKGCTPSQLALA 267 (347)
Q Consensus 244 ~~~~~~l~~ia~~~g~s~~qlal~ 267 (347)
..+.+++...|.+.|+|+.|+...
T Consensus 26 ~~Lh~~l~~~A~~~gvSlN~~I~~ 49 (51)
T PF05534_consen 26 PELHRALAEAAAAEGVSLNQWIEE 49 (51)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 456678999999999999987653
No 108
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.97 E-value=3.4e+02 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCc
Q 018998 34 KPEPDMIALIRHAINSGITFLDTS 57 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA 57 (347)
.+.++..++++..-++||..++.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 477899999999999999999985
No 109
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=38.72 E-value=3.2e+02 Score=25.19 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHH
Q 018998 248 ECVNEIAANKGC------TPSQLALAWVHHQGDDVCPIPGTTKIANLNENI 292 (347)
Q Consensus 248 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl 292 (347)
.+|.++|++.+. ++.++--.|..... ...+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 378899998875 77888888998764 456779999999876654
No 110
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.13 E-value=3.3e+02 Score=25.27 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCcCCC----chHHHHHHHhhcC-CCCCeEEEeecCccccCCCCCCCCCHHHHHHH
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIYGPH----TNEILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G----~sE~~lG~aL~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (347)
.+.+++.++++.+.+.|++.+.-.. |-. .-.+++.. +++. .-..+.|+|-.. .+.+.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~---------------ll~~~ 110 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGY---------------LLARR 110 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcCCCceEEEEcCch---------------hHHHH
Confidence 4678899999999999998886432 111 11222222 2321 123455555521 11222
Q ss_pred HHHHHHHcCCCccceEeeccCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCcchHHHH---HHHhcCCCe
Q 018998 109 CEASLKRLDVDCIDLYYQHRIDT--------QTPIEVTIGELKKLVEEGK----IKYIGLSEASASTI---RRAHAVHPI 173 (347)
Q Consensus 109 v~~sL~~Lg~d~iDl~~lH~p~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l---~~~~~~~~~ 173 (347)
+ +.|...|++.|- +-||..++ ...++.++++++.+++.|. |..+.+...+.+++ .++.....+
T Consensus 111 ~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 A-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred H-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2 334555665543 34454432 2357889999999999885 22333333333344 444433445
Q ss_pred eEEeeeccccccc---------hhhchHHHHHHhCCeEEE
Q 018998 174 TAVQLEWSLWTRD---------VEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 174 ~~~q~~~n~~~~~---------~~~~l~~~~~~~gi~via 204 (347)
.+..++|.+.... ...++++..++.|+.+..
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 5555555554321 113577777777665443
No 111
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=38.09 E-value=2.3e+02 Score=27.11 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCC------------CC-HH---HHH-HHHHHHHHcCCcceEecCcchH
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ------------TP-IE---VTI-GELKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~------------~~-~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (347)
-+.+.+++.++..+ .|+.++|.+|.+.--... .+ .+ +.+ .+.+.|.+.|- ..+++|||..
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 47778888887766 489999999987632110 01 11 122 34556666776 4578887753
No 112
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=38.09 E-value=1.9e+02 Score=25.62 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=52.0
Q ss_pred hHHHHHHHhcCCCeeEEee----eccccccc---hhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccC
Q 018998 160 SASTIRRAHAVHPITAVQL----EWSLWTRD---VEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHL 232 (347)
Q Consensus 160 ~~~~l~~~~~~~~~~~~q~----~~n~~~~~---~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~ 232 (347)
++++++.+.+...+.++-+ +||.++.. ..+++.++++.-|-.-+..-|+..|... +.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~-~~--------------- 113 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWP-GT--------------- 113 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCC-Cc---------------
Confidence 4566666665554444322 56666543 1257999999999999999999986422 11
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhCC
Q 018998 233 PRFQPGNLEHNQKLFECVNEIAANKGC 259 (347)
Q Consensus 233 p~~~~~~~~~~~~~~~~l~~ia~~~g~ 259 (347)
..+.+.....+++++.|..++|+
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCc
Confidence 11124556777888899888886
No 113
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=37.93 E-value=1.8e+02 Score=26.41 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCC--------------------------CccceEeeccCCCCCCH---HHHHHHHHHHHHcCCc
Q 018998 101 DPAYVRAACEASLKRLDV--------------------------DCIDLYYQHRIDTQTPI---EVTIGELKKLVEEGKI 151 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~L~~l~~~G~i 151 (347)
+++. ++.++++|+++|. ..-|+++|..|....+. .++++.|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3344 6778888888886 45578888888766654 367899999999977
Q ss_pred ceEecCcchHHHHHHHh
Q 018998 152 KYIGLSEASASTIRRAH 168 (347)
Q Consensus 152 r~iGvS~~~~~~l~~~~ 168 (347)
.|=+.+|+...+....
T Consensus 191 -tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 191 -TVLMVTHDLGLVMAYF 206 (254)
T ss_pred -EEEEEeCCcHHhHhhC
Confidence 6666677776665553
No 114
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.68 E-value=2.3e+02 Score=27.22 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeecc-CCC--------CCCHHHHH----HHHHHHHHcCCcceEecCcchH
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT--------QTPIEVTI----GELKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-p~~--------~~~~~~~~----~~L~~l~~~G~ir~iGvS~~~~ 161 (347)
-+.+.+++.++..++ |+.++|.+|.+-- |+. ..+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 467788888777655 8999999987642 210 01122222 23455666776 4578888753
No 115
>PRK05414 urocanate hydratase; Provisional
Probab=37.56 E-value=98 Score=30.91 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=75.1
Q ss_pred HHHHHHHCCCCeee--CcCCcC--------CCchHHHHHHHhhc---CCCCCeEEEeecCccccCC--------C--CCC
Q 018998 42 LIRHAINSGITFLD--TSDIYG--------PHTNEILLGKAFKG---GFRERAELATKFGIGIVDG--------K--YGY 98 (347)
Q Consensus 42 ~l~~A~~~Gi~~~D--tA~~Yg--------~G~sE~~lG~aL~~---~~R~~~~i~tK~~~~~~~~--------~--~~~ 98 (347)
-++..-+.|+.-+= ||..|- +|.-|.++..+=+. ..+.+++|++=+|.-...- . -..
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 196 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAV 196 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEE
Confidence 35556677877653 555441 14455555444332 2467788888776432210 0 001
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 170 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 170 (347)
..++ .+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++.+.
T Consensus 197 Evd~-------~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 197 EVDE-------SRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EECH-------HHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 1233 344567888999975 356899999999999999999999999888888888775
No 116
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=37.40 E-value=3.1e+02 Score=24.63 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCcchHHHHHHHhcCCCeeEEe
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEG-KIKYIGLSEASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (347)
.++.+. +..+-+.|.++|+++|++-+ |.. -+.-++.++++.+.+ .++..+.+....+.++.+.+.. ++.+.
T Consensus 16 ~~~~~~-k~~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 16 AFSREE-KLAIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC-cCEEE
Confidence 445554 44566669999999999953 221 123356677776643 4667777766777787776642 34444
Q ss_pred eecccccc--------ch------hhchHHHHHHhCCeEE
Q 018998 178 LEWSLWTR--------DV------EEDIIPTCRELGIGIV 203 (347)
Q Consensus 178 ~~~n~~~~--------~~------~~~l~~~~~~~gi~vi 203 (347)
+-++.-+. .. -...+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 43322111 11 1368889999998765
No 117
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=37.27 E-value=21 Score=33.93 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCcccc
Q 018998 41 ALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIV 92 (347)
Q Consensus 41 ~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~ 92 (347)
.++++|+++|-+++|.+.-=.. =|++--++=+...+..++|.+-+|....
T Consensus 100 ~VVkacienG~~~vDISGEP~f--~E~mq~kYhd~A~ekGVYIVsaCGfDSI 149 (423)
T KOG2733|consen 100 PVVKACIENGTHHVDISGEPQF--MERMQLKYHDLAKEKGVYIVSACGFDSI 149 (423)
T ss_pred HHHHHHHHcCCceeccCCCHHH--HHHHHHHHHHHHHhcCeEEEeecccCCC
Confidence 4899999999999998841111 3454444434447888999999987643
No 118
>COG0218 Predicted GTPase [General function prediction only]
Probab=36.80 E-value=2.7e+02 Score=24.21 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=67.5
Q ss_pred HHHHHHHHHHH------HCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 37 PDMIALIRHAI------NSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 37 ~~~~~~l~~A~------~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
+.-.+++..-+ ...|-.+|.-..-- ..++.+=++|......=+++.||.-. .......+.+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK----------i~~~~~~k~l~ 158 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK----------LKKSERNKQLN 158 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc----------CChhHHHHHHH
Confidence 34444554443 33566777654333 25677778888777788899999752 34566778889
Q ss_pred HHHHHcCCCccce--EeeccCCCCCCHHHHHHHHHHHHHc
Q 018998 111 ASLKRLDVDCIDL--YYQHRIDTQTPIEVTIGELKKLVEE 148 (347)
Q Consensus 111 ~sL~~Lg~d~iDl--~~lH~p~~~~~~~~~~~~L~~l~~~ 148 (347)
...+.|+.+..|- +++........+++++..+.+....
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 9999998777765 5555555556688888888776654
No 119
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=36.54 E-value=1e+02 Score=30.72 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=74.5
Q ss_pred HHHHHHHCCCCeee--CcCCcC--------CCchHHHHHHHhhc---CCCCCeEEEeecCccccCC--------C--CCC
Q 018998 42 LIRHAINSGITFLD--TSDIYG--------PHTNEILLGKAFKG---GFRERAELATKFGIGIVDG--------K--YGY 98 (347)
Q Consensus 42 ~l~~A~~~Gi~~~D--tA~~Yg--------~G~sE~~lG~aL~~---~~R~~~~i~tK~~~~~~~~--------~--~~~ 98 (347)
-++...+.|+.-+= ||..|- +|.-|.++..+=+. ..+.++++++=+|.....- . -..
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 187 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAV 187 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEE
Confidence 35556677887663 555441 14455554444332 2466777777776432110 0 001
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 170 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 170 (347)
..++ .+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++.+.
T Consensus 188 Evd~-------~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 188 EVDE-------SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred EECH-------HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 1233 344567888999975 356899999999999999999999999888888888875
No 120
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.51 E-value=2.9e+02 Score=26.56 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=55.7
Q ss_pred eEeeccCCCC-----------CCHHHHHHHHHHHHHcCCcc----eE---ecCcchHHH---HHHHhcCC------CeeE
Q 018998 123 LYYQHRIDTQ-----------TPIEVTIGELKKLVEEGKIK----YI---GLSEASAST---IRRAHAVH------PITA 175 (347)
Q Consensus 123 l~~lH~p~~~-----------~~~~~~~~~L~~l~~~G~ir----~i---GvS~~~~~~---l~~~~~~~------~~~~ 175 (347)
.+.||.|+.. -+++++++++.+..++..=| |+ || |.+.++ |.+++... +.-+
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEE
Confidence 3579999653 35788999998886543311 22 33 444554 44444444 5688
Q ss_pred Eeeeccccccc----hh----hchHHHHHHhCCeEEEcccCCC
Q 018998 176 VQLEWSLWTRD----VE----EDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 176 ~q~~~n~~~~~----~~----~~l~~~~~~~gi~via~~pl~~ 210 (347)
+-++||+.... +. ....+..+++||.+..+...+.
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999996431 11 3566667788999998877653
No 121
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=36.34 E-value=2.7e+02 Score=25.90 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=62.0
Q ss_pred cceEeeccCCC-----CCCHHHHHHHHHHHHHcCCcc-eEecCcc---hHHHHHHHhcCCCe-eEEeeeccccccchhhc
Q 018998 121 IDLYYQHRIDT-----QTPIEVTIGELKKLVEEGKIK-YIGLSEA---SASTIRRAHAVHPI-TAVQLEWSLWTRDVEED 190 (347)
Q Consensus 121 iDl~~lH~p~~-----~~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~~-~~~q~~~n~~~~~~~~~ 190 (347)
.|++.+|-.+. +.+..++...|+++.+.=+|- -||=|.. +++.++++.+...- .+.....|+ +... +.
T Consensus 165 admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanl-dlDy-~~ 242 (403)
T COG2069 165 ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANL-DLDY-ER 242 (403)
T ss_pred CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecccc-ccCH-HH
Confidence 47888886543 245689999999999887774 5677764 77888888765322 333333333 2222 57
Q ss_pred hHHHHHHhCCeEEEcccCCCC
Q 018998 191 IIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 191 l~~~~~~~gi~via~~pl~~G 211 (347)
+.+.+.++|=.|++|+++.-.
T Consensus 243 ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 243 IAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred HHHHHHhcCceEEEeeccChH
Confidence 999999999999999988753
No 122
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.29 E-value=3.8e+02 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeecc-CCC--------CCCHHHHH-HHHHHHHHcCCcceEecCcchH
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT--------QTPIEVTI-GELKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-p~~--------~~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (347)
-+.+.+++.++..+ .++.++|.++.|.- |.. ..+.++.+ .+.+.|.+.|- ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 36677777776644 58899998887653 211 01122333 44566667785 5688888753
No 123
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.13 E-value=3.1e+02 Score=24.34 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCC
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGP 62 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 62 (347)
+.++..++++.|.+.||+-+=..+||-.
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccC
Confidence 7899999999999999998876666654
No 124
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=35.78 E-value=1.2e+02 Score=27.63 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCcceE
Q 018998 137 VTIGELKKLVEEGKIKYI 154 (347)
Q Consensus 137 ~~~~~L~~l~~~G~ir~i 154 (347)
..|-.|+++++.||.--+
T Consensus 150 ~~wpTL~em~~~GkrViv 167 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCCHHHHHhCCCEEEE
Confidence 357889999999986544
No 125
>PRK12928 lipoyl synthase; Provisional
Probab=35.72 E-value=2.9e+02 Score=25.44 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCcC---CCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIYG---PHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
.+.++..+.++.+.+.|++++-...... ....-..+.+.++......-.+..++. +++.+.+ .+
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l------------tp~~~~~-~~ 153 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL------------TPDFWGG-QR 153 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe------------ccccccC-CH
Q ss_pred HHHHHcCCCccceEee---------ccCCCCCCHHHHHHHHHHHHHcC---Ccce---EecCcchHHHHHHHhcC---CC
Q 018998 111 ASLKRLDVDCIDLYYQ---------HRIDTQTPIEVTIGELKKLVEEG---KIKY---IGLSEASASTIRRAHAV---HP 172 (347)
Q Consensus 111 ~sL~~Lg~d~iDl~~l---------H~p~~~~~~~~~~~~L~~l~~~G---~ir~---iGvS~~~~~~l~~~~~~---~~ 172 (347)
+.|+.|.-...+++.. .......+.++.++.++.+++.| .++. +|+ .-+.+++.+.+.. ..
T Consensus 154 e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 154 ERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcC
Q ss_pred eeEEee-eccc-----------cccchhhchHHHHHHhCCeEEEcccC
Q 018998 173 ITAVQL-EWSL-----------WTRDVEEDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 173 ~~~~q~-~~n~-----------~~~~~~~~l~~~~~~~gi~via~~pl 208 (347)
++.+.+ +|.. .....-+.+-+.+.+.|...++.+||
T Consensus 233 ~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 233 CDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 126
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.61 E-value=3.8e+02 Score=25.24 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCc
Q 018998 34 KPEPDMIALIRHAINSGITFLDTS 57 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA 57 (347)
.+.++..++++..-++||..++.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 467889999999999999999985
No 127
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=35.40 E-value=4.5e+02 Score=25.97 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=60.4
Q ss_pred cCCcCCCchHHHHHHHhhc----CC-CCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCC---C-ccceEeec
Q 018998 57 SDIYGPHTNEILLGKAFKG----GF-RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV---D-CIDLYYQH 127 (347)
Q Consensus 57 A~~Yg~G~sE~~lG~aL~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~---d-~iDl~~lH 127 (347)
.-.|| .|+-|-++|++ .+ .+-++|.|-+..... . +.|..-+++.-+.++- + .+.++.+|
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI------G---DDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII------G---DDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh------c---cCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 34778 56666677765 33 344678887754321 1 2233333333332211 1 47899999
Q ss_pred cCCCCCCHH-HHHHHHHHHHH--------cCCcceEecCc--chHHHHHHHhcCCCeeEEee
Q 018998 128 RIDTQTPIE-VTIGELKKLVE--------EGKIKYIGLSE--ASASTIRRAHAVHPITAVQL 178 (347)
Q Consensus 128 ~p~~~~~~~-~~~~~L~~l~~--------~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 178 (347)
.|+...... ....+++.+.+ +++|--||-.+ -+.++++++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 998875432 23333333332 46677776333 35567777777766655544
No 128
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=35.30 E-value=3.5e+02 Score=24.64 Aligned_cols=111 Identities=10% Similarity=-0.035 Sum_probs=62.8
Q ss_pred cceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcC-CcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCC
Q 018998 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSD-IYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKY 96 (347)
Q Consensus 18 ~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~ 96 (347)
.||++.|.....-+....+....+-..+.....+|.++.-. .|.. -+++.+-++.++ ..+++..+.|+.......
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~-- 79 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITHQ-- 79 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccch--
Confidence 45666666532212211222222223345566688777554 4544 367777778775 688999999986443210
Q ss_pred CCCCC-HHHHHHHHHHHHHHcCCCccceEeeccCCCCC
Q 018998 97 GYHGD-PAYVRAACEASLKRLDVDCIDLYYQHRIDTQT 133 (347)
Q Consensus 97 ~~~~~-~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~ 133 (347)
..-.. -..+.+.+.+-++.|| +.+..+++.-|..-.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 80 RRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred hhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 00001 1344555555566777 689999999886653
No 129
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=35.28 E-value=3.3e+02 Score=24.37 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=79.6
Q ss_pred HHHHCCCCeeeCcCC-cCC-C-chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 018998 45 HAINSGITFLDTSDI-YGP-H-TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCI 121 (347)
Q Consensus 45 ~A~~~Gi~~~DtA~~-Yg~-G-~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~i 121 (347)
.|++.|...+|.=+- -|. | ....++.+. ...-..+.-++..+|-. .+.+..+..+....- .-|+|||
T Consensus 15 ~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i-~~~~~~~~pvSAtiGDl--------p~~p~~~~~aa~~~a-~~Gvdyv 84 (235)
T PF04476_consen 15 EALAGGADIIDLKNPAEGALGALFPWVIREI-VAAVPGRKPVSATIGDL--------PMKPGTASLAALGAA-ATGVDYV 84 (235)
T ss_pred HHHhCCCCEEEccCCCCCCCCCCCHHHHHHH-HHHcCCCCceEEEecCC--------CCCchHHHHHHHHHH-hcCCCEE
Confidence 467899999996542 111 2 133444433 33223335677777633 234555555444443 3588888
Q ss_pred ceEeeccCCCCCCHHHHHHHH-------HHHHHcCCcceEecCcch------HHHHHHHhcCCCeeEEeeeccc------
Q 018998 122 DLYYQHRIDTQTPIEVTIGEL-------KKLVEEGKIKYIGLSEAS------ASTIRRAHAVHPITAVQLEWSL------ 182 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L-------~~l~~~G~ir~iGvS~~~------~~~l~~~~~~~~~~~~q~~~n~------ 182 (347)
=+=+.-..+. ++..+.| .++..+.++-+.+++.+. +..+-.......++.+++..-.
T Consensus 85 KvGl~g~~~~----~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L 160 (235)
T PF04476_consen 85 KVGLFGCKDY----DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSL 160 (235)
T ss_pred EEecCCCCCH----HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCch
Confidence 7766533322 3333333 333334567788888763 4555555555667777776432
Q ss_pred cccc---hhhchHHHHHHhCCeE
Q 018998 183 WTRD---VEEDIIPTCRELGIGI 202 (347)
Q Consensus 183 ~~~~---~~~~l~~~~~~~gi~v 202 (347)
++.- .-.+.++.||++|+.+
T Consensus 161 ~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 161 FDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred hhcCCHHHHHHHHHHHHHccchh
Confidence 2211 1246888888888753
No 130
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=35.25 E-value=2.8e+02 Score=26.11 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCC
Q 018998 139 IGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 139 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G 211 (347)
++.|.+|+++-.|. +.|=|-++...+.+++....++++|+..+.+-. -.+.++.|+++|+.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 45566666553332 344455677888888888888999888776543 246778899999999987766544
No 131
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.16 E-value=3.6e+02 Score=28.26 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeCcC--CcCCCchHHHHHHHhhcCCCCCeEEEe--ecCccccCC----CCCCC--CC-
Q 018998 33 PKPEPDMIALIRHAINSGITFLDTSD--IYGPHTNEILLGKAFKGGFRERAELAT--KFGIGIVDG----KYGYH--GD- 101 (347)
Q Consensus 33 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~G~sE~~lG~aL~~~~R~~~~i~t--K~~~~~~~~----~~~~~--~~- 101 (347)
..|.++..+.++...+.|+.-|=.+. +|.+..+|..+++.+++.. .++.|++ ++++..+.- +..-+ ..
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 46889999999999999999887664 7888899999999999855 5666666 776643211 00000 01
Q ss_pred -HHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHH
Q 018998 102 -PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE 136 (347)
Q Consensus 102 -~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~ 136 (347)
-....++++..|+.-|.+ .+++++-+.....+.+
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~~ 248 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSAE 248 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCccccHH
Confidence 134555667777777754 5788877765544443
No 132
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=34.55 E-value=4.1e+02 Score=25.22 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=59.8
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhC
Q 018998 122 DLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELG 199 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 199 (347)
++.++-.|-.. +.++.+.+|++...+. +.|=|.++..++..++....++++|+.....-. ..-..+...|+.+|
T Consensus 214 ~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~g 289 (368)
T TIGR02534 214 GVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAG 289 (368)
T ss_pred ChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcC
Confidence 45556655442 3467777788776665 677778889899998888888999987665321 12257899999999
Q ss_pred CeEEEcccCCC
Q 018998 200 IGIVAYSPLGR 210 (347)
Q Consensus 200 i~via~~pl~~ 210 (347)
+.++..+.+..
T Consensus 290 i~~~~~~~~~s 300 (368)
T TIGR02534 290 IALYGGTMLEG 300 (368)
T ss_pred Cceeeecchhh
Confidence 99877654443
No 133
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.88 E-value=4.1e+02 Score=25.00 Aligned_cols=148 Identities=19% Similarity=0.116 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHc
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL 116 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L 116 (347)
++..+.+..+.+.|++.|=.=- +.....+.+ +++++... ++.|..=.. ..++.+... + ++.|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g-~~~l~lDaN---------~~~~~~~a~--~---~~~l 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP-DIPLMADAN---------SAYTLADIP--L---LKRL 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC-CCeEEEECC---------CCCCHHHHH--H---HHHh
Confidence 6677788888899999873211 111123333 33333211 332222221 133444432 2 3444
Q ss_pred CCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCc-ceEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHH
Q 018998 117 DVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPT 194 (347)
Q Consensus 117 g~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~ 194 (347)
. ..++.++-.|-. .+.++.+.+|++.-.+ -+.|=|.++...+..+++...++++|+..+..-. ..-..+...
T Consensus 201 ~--~~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~ 274 (354)
T cd03317 201 D--EYGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDL 274 (354)
T ss_pred h--cCCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHH
Confidence 3 235666666544 2346677777765443 3566677899999999988888999987765432 123578999
Q ss_pred HHHhCCeEEEcccC
Q 018998 195 CRELGIGIVAYSPL 208 (347)
Q Consensus 195 ~~~~gi~via~~pl 208 (347)
|+.+|+.++..+..
T Consensus 275 A~~~gi~~~~g~~~ 288 (354)
T cd03317 275 CQEHGIPVWCGGML 288 (354)
T ss_pred HHHcCCcEEecCcc
Confidence 99999998765444
No 134
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=33.83 E-value=95 Score=21.39 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCHHHHH
Q 018998 249 CVNEIAANKGCTPSQLA 265 (347)
Q Consensus 249 ~l~~ia~~~g~s~~qla 265 (347)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998886
No 135
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.77 E-value=3.4e+02 Score=24.04 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcC
Q 018998 35 PEPDMIALIRHAINSGITFLDTSD 58 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~ 58 (347)
+.++..++++...+.||..++...
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc
Confidence 678999999999999999999764
No 136
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=33.53 E-value=2.7e+02 Score=26.15 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHc
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL 116 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L 116 (347)
...+++|+.+-+.|| .+|.|.. +++.+=+++.- .+..+|+|....... .++.++--.++++...++=
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al-----~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL-----VDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc-----cCCCCCCCHHHHHHHHhcC
Confidence 357889999999999 8999975 66777777764 455688888655432 2233333444555555554
Q ss_pred CCCccceEeeccC-----CCCCCHHHHHHHHHHHHHcCCcceEecCc
Q 018998 117 DVDCIDLYYQHRI-----DTQTPIEVTIGELKKLVEEGKIKYIGLSE 158 (347)
Q Consensus 117 g~d~iDl~~lH~p-----~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (347)
| -|.+.++-.. ....++++..+.++.+++.+=++++|+..
T Consensus 216 G--vIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 216 G--VIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred C--EEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 4 3444433222 23457899999999999999999999974
No 137
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=33.44 E-value=4.1e+02 Score=24.86 Aligned_cols=134 Identities=11% Similarity=0.067 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCC----------cCC--CchHHHHHHHhhcC-CCCCeEEEeecCccccCCCCCCCCC
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDI----------YGP--HTNEILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGD 101 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~--G~sE~~lG~aL~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 101 (347)
+.++..+..+.+.+.|+..||.--. +|. ...-+.+.+.++.. ..-++-|+.|+...+.+ +
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------~ 147 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------E 147 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-------C
Confidence 5677777777788899999994321 221 11234444444332 11134678887543311 1
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCcc-hHHHHHHHhcCCCeeEEee
Q 018998 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPI--EVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 178 (347)
Q Consensus 102 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 178 (347)
..... .+-+.++..|. |.+.+|.-...... ...|+.+.++++.=.|--||.... ++++++++++....+.+|+
T Consensus 148 ~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 148 HRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 11111 23334666775 66678865432111 134777788887767777777664 7788888887767788877
Q ss_pred e
Q 018998 179 E 179 (347)
Q Consensus 179 ~ 179 (347)
-
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 4
No 138
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.36 E-value=4.3e+02 Score=25.17 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=15.6
Q ss_pred CCHHHHHHHHH-------HHHHCCCCeeeC
Q 018998 34 KPEPDMIALIR-------HAINSGITFLDT 56 (347)
Q Consensus 34 ~~~~~~~~~l~-------~A~~~Gi~~~Dt 56 (347)
.+.++..++++ .|.++|+.-++.
T Consensus 149 mt~~eI~~ii~~f~~AA~rA~~AGfDGVEI 178 (362)
T PRK10605 149 LELEEIPGIVNDFRQAIANAREAGFDLVEL 178 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45666666665 456789998875
No 139
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=33.35 E-value=2.6e+02 Score=24.53 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcC-CCchH---HHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYG-PHTNE---ILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~G~sE---~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
++++.....+.|.++|..|+=|+..|+ .|-+. +.+.+.++. .+-.|.... -.+.+...+-++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~------~v~IKaaGG--------irt~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD------TIGVKASGG--------VRTAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc------CCeEEEeCC--------CCCHHHHHHHHH
Confidence 557788999999999999999998886 33322 344444432 234444222 126788888888
Q ss_pred HHHHHcCCCc
Q 018998 111 ASLKRLDVDC 120 (347)
Q Consensus 111 ~sL~~Lg~d~ 120 (347)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8899999875
No 140
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=32.54 E-value=3.2e+02 Score=24.79 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=52.5
Q ss_pred CHH-HHHHHHHHHHHCCCCeeeCcCCcCC-CchH---HHHHHHhhcCC-CCCeEEEeecCccccCCCCCCCCCHHHHHHH
Q 018998 35 PEP-DMIALIRHAINSGITFLDTSDIYGP-HTNE---ILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (347)
Q Consensus 35 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-G~sE---~~lG~aL~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (347)
+++ +..++.+.|.++|..|+=|+..|+. |.+. +++-+++++.. .. .+--|.... -.+.+....-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~--~vgIKAsGG--------Irt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAK--TVGFKPAGG--------VRTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCC--CeeEEccCC--------CCCHHHHHHH
Confidence 344 5888999999999999999999874 4333 34444443210 11 244454221 2267888888
Q ss_pred HHHHHHHcCCCccc
Q 018998 109 CEASLKRLDVDCID 122 (347)
Q Consensus 109 v~~sL~~Lg~d~iD 122 (347)
++.--+.||.++++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 99999999998876
No 141
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=32.17 E-value=4.8e+02 Score=25.27 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=62.4
Q ss_pred HHHHHHHHHHH-----------HHcCCCccceEeeccCCCC-----CCHHHHHHHHHHHHHcCCcc-eEecC---cchHH
Q 018998 103 AYVRAACEASL-----------KRLDVDCIDLYYQHRIDTQ-----TPIEVTIGELKKLVEEGKIK-YIGLS---EASAS 162 (347)
Q Consensus 103 ~~i~~~v~~sL-----------~~Lg~d~iDl~~lH~p~~~-----~~~~~~~~~L~~l~~~G~ir-~iGvS---~~~~~ 162 (347)
+.+++.++... +.++ +|++.||.-..+ .+.++..+..++..+.=.+= -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666655 4455 578888865432 33456777777764443332 23222 56888
Q ss_pred HHHHHhcCCCe-eEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCc
Q 018998 163 TIRRAHAVHPI-TAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGF 212 (347)
Q Consensus 163 ~l~~~~~~~~~-~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~ 212 (347)
.++..++...- .++...-|.=+ + -+.+...|++.|..+++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88887765321 12222222211 2 2479999999999999999887654
No 142
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=32.16 E-value=3e+02 Score=25.53 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCc-ceEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhCCeEEEcccCCCCc
Q 018998 140 GELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELGIGIVAYSPLGRGF 212 (347)
Q Consensus 140 ~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~via~~pl~~G~ 212 (347)
+.+.+|.+.-.+ -+.|=|.++...+.+++....++++|+.....-. ..-..+.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 455555555333 2445566778888888887778888887665331 123579999999999999877665543
No 143
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=32.10 E-value=1.1e+02 Score=27.23 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEec----Cc--chHHHHHHHhcCCCee
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGL----SE--ASASTIRRAHAVHPIT 174 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv----S~--~~~~~l~~~~~~~~~~ 174 (347)
+.+.+-.-+.+.-+.-. .| + +++..|-...+.++++++|.+|++.=+-+-+.| .. .+.+.++.+.+....+
T Consensus 87 d~~~~adYl~~l~~aA~-P~-~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~d 163 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAA-PF-K-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAAD 163 (248)
T ss_dssp -HHHHHHHHHHHHHHHT-TS---EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SS
T ss_pred CHHHHHHHHHHHHHhcC-CC-e-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcC
Confidence 45544444444333333 11 2 456677666778888888887776433333333 22 3778899999888889
Q ss_pred EEeeecccccc-chhhchHHHHHHhCCeEEE
Q 018998 175 AVQLEWSLWTR-DVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 175 ~~q~~~n~~~~-~~~~~l~~~~~~~gi~via 204 (347)
.+|+..==+-. +-.-+.+-+|+++||+.-.
T Consensus 164 mVQIKtPDLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 164 MVQIKTPDLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp EEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred EEEecCCCccchhhHHHHHHHHHhcCCceee
Confidence 99985421111 0012567799999999554
No 144
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.07 E-value=2.9e+02 Score=22.70 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=40.9
Q ss_pred eEecCcch--HHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccCCCCcCC
Q 018998 153 YIGLSEAS--ASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGRGFFS 214 (347)
Q Consensus 153 ~iGvS~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~ 214 (347)
.+|+..|+ ...+.++.....|+++.. -+.+.+ ++.+..+.++++.++.-|.+.++.++
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~~---g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVINL---GLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEec---CCcCCH-HHHHHHHHhcCCCEEEEEeccchHHH
Confidence 45777774 356777777777777632 233333 57888888999999999988887543
No 145
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=31.63 E-value=1.8e+02 Score=27.73 Aligned_cols=88 Identities=11% Similarity=0.236 Sum_probs=52.5
Q ss_pred eEeeccCCCC-----------CCHHHHHHHHHHHHH-cC-C--cceEecC--cchHHH---HHHHhcCCCeeEEeeeccc
Q 018998 123 LYYQHRIDTQ-----------TPIEVTIGELKKLVE-EG-K--IKYIGLS--EASAST---IRRAHAVHPITAVQLEWSL 182 (347)
Q Consensus 123 l~~lH~p~~~-----------~~~~~~~~~L~~l~~-~G-~--ir~iGvS--~~~~~~---l~~~~~~~~~~~~q~~~n~ 182 (347)
.+-||.+++. .+++++++++.++.+ .| + |+++=+. |.+.++ +.+++...++.++.++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3678988642 236788888877654 33 2 2333222 334444 4444444556777889998
Q ss_pred cccc----hh----hchHHHHHHhCCeEEEcccCCC
Q 018998 183 WTRD----VE----EDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 183 ~~~~----~~----~~l~~~~~~~gi~via~~pl~~ 210 (347)
+... +. +...+..+++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6531 11 2456667778999988776653
No 146
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=31.41 E-value=3.8e+02 Score=23.85 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCcccc-----------C-C------CC
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIV-----------D-G------KY 96 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~-----------~-~------~~ 96 (347)
+.+...+++++|-..|.+|+|.|.+ -+++..+..- ..-.+..+-+.+... + | ..
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad------p~LV~~~~~~--s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~q 96 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD------PELVKLAKSL--SNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQ 96 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC------HHHHHHHHHh--CCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhc
Confidence 7789999999999999999999973 3455544322 111233333322110 0 0 12
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCC
Q 018998 97 GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGK 150 (347)
Q Consensus 97 ~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (347)
...++.+.+..-.++.++.|- |+.+---.....+++++.+--++|++.|-
T Consensus 97 Gr~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 97 GRRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred CCeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhCC
Confidence 345778888888888888885 34444444455667888888888887765
No 147
>PRK05406 LamB/YcsF family protein; Provisional
Probab=31.02 E-value=1.6e+02 Score=26.49 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=48.8
Q ss_pred eeccccccccCCCCCCHHHHHHHHHHH-HHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCC--CC
Q 018998 20 GLGCMGMSALYGPPKPEPDMIALIRHA-INSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG--KY 96 (347)
Q Consensus 20 ~lG~~~~g~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~--~~ 96 (347)
+||.|.+| ++++...++..| +.+|+ |.| ....+-+.++-.....+-|-...+.....+ +.
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 77888875 467788888777 46666 555 455666666544455566666655433222 33
Q ss_pred CCCCCHHHHHHHHHHHHHHc
Q 018998 97 GYHGDPAYVRAACEASLKRL 116 (347)
Q Consensus 97 ~~~~~~~~i~~~v~~sL~~L 116 (347)
..+.+++.++..+..-+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 44677777777665555544
No 148
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=30.99 E-value=2e+02 Score=27.06 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=70.3
Q ss_pred HHhhcCCCCCeEEEeecCccccCCC-CCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcC
Q 018998 71 KAFKGGFRERAELATKFGIGIVDGK-YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEG 149 (347)
Q Consensus 71 ~aL~~~~R~~~~i~tK~~~~~~~~~-~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G 149 (347)
..|....|+++-++|++......-. .....+ ..+.+.+-+..++.| -+..+|.. +.++.....++....|
T Consensus 15 ~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~ 85 (326)
T PRK05458 15 NKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQG 85 (326)
T ss_pred CCCCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhccccc
Confidence 3444457888899998853211100 001112 278888888888887 56678872 3344444445555667
Q ss_pred CcceEecCc--chHHHHHHHhcCC-CeeEEeeeccccccchhhchHHHHHHh--CCeEEE
Q 018998 150 KIKYIGLSE--ASASTIRRAHAVH-PITAVQLEWSLWTRDVEEDIIPTCREL--GIGIVA 204 (347)
Q Consensus 150 ~ir~iGvS~--~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~--gi~via 204 (347)
++-.++++. ...+++.++++.. .++++++....-+.+.-.+++...+++ ++.+++
T Consensus 86 l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 86 LIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred cEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 765555543 3445555555542 357888755544333334566666655 355555
No 149
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=30.92 E-value=3.1e+02 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHCCCCeeeCc
Q 018998 36 EPDMIALIRHAINSGITFLDTS 57 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~DtA 57 (347)
.|.....++.|++.|.+.|++-
T Consensus 12 pent~~a~~~a~~~g~~~iE~D 33 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELD 33 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEE
Confidence 4778889999999999988743
No 150
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=30.77 E-value=50 Score=28.51 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeeeccc
Q 018998 111 ASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWSL 182 (347)
Q Consensus 111 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~ 182 (347)
..+..+|.||+=+.+. |...- .-..+...++.+.-..+.+||- |.+.+.+.+......++++|++-+-
T Consensus 13 ~~~~~~g~d~~Gfi~~--~~S~R--~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIFY--PKSPR--YVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTT--B--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeecC--CCCCC--ccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 3567889999888643 33111 1223445555554444478885 4578888888888999999986554
No 151
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=30.69 E-value=1.6e+02 Score=27.37 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCc----------CCcCCC--chHHHHHHHhhcC-CCCCeEEEeecCccccCCCCCCCCC
Q 018998 35 PEPDMIALIRHAINSGITFLDTS----------DIYGPH--TNEILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGD 101 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~G--~sE~~lG~aL~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 101 (347)
+.+.+.+..+.+.+.|+..||-- ..||.+ ..-..+.+.++.. ..-.+-|+.|+...+ +.+
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~-------~~~ 136 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW-------DDS 136 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC-------T--
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc-------ccc
Confidence 66778788787788899999943 234432 2345555555542 112266788876553 222
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCc-chHHHHHHHhcCCCeeEEee
Q 018998 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPI--EVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 178 (347)
Q Consensus 102 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 178 (347)
.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+++.+..+....+.+++
T Consensus 137 ~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 333333 445667777 689999986554322 45688888888876665555444 46677777766555566655
No 152
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.41 E-value=4.1e+02 Score=24.02 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHH
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL 113 (347)
.+.++..++++.-.++||..++... ...+..+.-.-+.+....+. +++.... ....+.++++ +
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~-----~~v~~~~-------r~~~~di~~a----~ 81 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLK-----AKILTHI-------RCHMDDARIA----V 81 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCC-----CcEEEEe-------cCCHHHHHHH----H
Confidence 3678899999999999999999864 22222332223333332221 1111100 1234444444 4
Q ss_pred HHcCCCccceEeeccC-----CCCCCHHH----HHHHHHHHHHcCCcceEecC
Q 018998 114 KRLDVDCIDLYYQHRI-----DTQTPIEV----TIGELKKLVEEGKIKYIGLS 157 (347)
Q Consensus 114 ~~Lg~d~iDl~~lH~p-----~~~~~~~~----~~~~L~~l~~~G~ir~iGvS 157 (347)
+ .|++.|.+++=-++ ....+.++ +.+..+..++.|.--.+++.
T Consensus 82 ~-~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 82 E-TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred H-cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3 47777776652111 01122333 44555777777866555553
No 153
>PRK00077 eno enolase; Provisional
Probab=30.39 E-value=3.6e+02 Score=26.36 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcC--CcceEecCc--chHHHHHHHhcCCCeeE
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEG--KIKYIGLSE--ASASTIRRAHAVHPITA 175 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 175 (347)
++++...+.+.+.++. .+++++-.|-... .|+.+.+|.++- ++.-.|=-. .++..++.+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 4555555555555544 3577787776533 466666676653 454433322 36889999998888899
Q ss_pred Eeeecccccc-chhhchHHHHHHhCCeEEE
Q 018998 176 VQLEWSLWTR-DVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 176 ~q~~~n~~~~-~~~~~l~~~~~~~gi~via 204 (347)
+|+..+-.-. ..-.++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9987775432 1235789999999998664
No 154
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=30.37 E-value=3.9e+02 Score=26.69 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=71.6
Q ss_pred ccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEeeeccccccc-------------
Q 018998 120 CIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRD------------- 186 (347)
Q Consensus 120 ~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~------------- 186 (347)
..|+++.--|+.......+++.+..+...+.|-.-..|..+...+.+........++-.++|+....
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 4588888777665444566777777666676544444555667776655443333444444443211
Q ss_pred -hhhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHH-HHHHHHHHHHhCCCHHHH
Q 018998 187 -VEEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKL-FECVNEIAANKGCTPSQL 264 (347)
Q Consensus 187 -~~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~l~~ia~~~g~s~~ql 264 (347)
.-+.+.+++...|...+.......|++. ...+.. +.+...++++.++++.++
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~--------------------------nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVG--------------------------DRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhH--------------------------HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 1134556666667666654444444433 223334 477778888999999877
Q ss_pred HHHHH
Q 018998 265 ALAWV 269 (347)
Q Consensus 265 al~~~ 269 (347)
--...
T Consensus 214 d~~~~ 218 (495)
T PRK07531 214 DDVIR 218 (495)
T ss_pred HHHHh
Confidence 64433
No 155
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=30.34 E-value=1.3e+02 Score=29.97 Aligned_cols=115 Identities=20% Similarity=0.138 Sum_probs=66.6
Q ss_pred HHHHHHHCCCCeee--CcCCcCC--------CchHHHHHHHhh---cCCCCCeEEEeecCccccC--------CC--CCC
Q 018998 42 LIRHAINSGITFLD--TSDIYGP--------HTNEILLGKAFK---GGFRERAELATKFGIGIVD--------GK--YGY 98 (347)
Q Consensus 42 ~l~~A~~~Gi~~~D--tA~~Yg~--------G~sE~~lG~aL~---~~~R~~~~i~tK~~~~~~~--------~~--~~~ 98 (347)
-+++..+.|++-+= ||..|-- |.-|.++..+=+ +..+.+++|++=+|.-... +. -..
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~v 186 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIV 186 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEE
Confidence 45666778887764 6654421 333444333322 2367889999888754210 00 011
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 170 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 170 (347)
..++ ++.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.++++.+.
T Consensus 187 Evd~-------~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 187 EVDP-------SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp ES-H-------HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT
T ss_pred EECH-------HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc
Confidence 2233 3445677788999853 56899999999999999999999999888888888776
No 156
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.94 E-value=50 Score=22.69 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHH----HHCCCCeeeC-----cCCcCCCchHHHHH
Q 018998 35 PEPDMIALIRHA----INSGITFLDT-----SDIYGPHTNEILLG 70 (347)
Q Consensus 35 ~~~~~~~~l~~A----~~~Gi~~~Dt-----A~~Yg~G~sE~~lG 70 (347)
++.+|.++++.| ++.|+.|+|- ++.+. -|++||
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~VP~~~---VEeiLG 56 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNNKRLGRVPASA---VEEILG 56 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCCccCcccHHH---HHHHHC
Confidence 457788888876 5789999873 33333 466665
No 157
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=29.93 E-value=5.1e+02 Score=24.96 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCC--CchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHH
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGP--HTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~ 114 (347)
++..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|.+.+.... ....+.+++.++.+.+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-------~~e~~av~~~~~~a~~ 239 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG-------DSILEALDELLRLGRE 239 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc-------ccHHHHHHHHHHHHHH
Confidence 45677788899999987755555533 34666777666553333556666653221 1123344444444432
Q ss_pred HcCCCccceEeeccCCCCC----CHHHHHHHHHHHHHcCC
Q 018998 115 RLDVDCIDLYYQHRIDTQT----PIEVTIGELKKLVEEGK 150 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~~----~~~~~~~~L~~l~~~G~ 150 (347)
.|. -+.+.|-..... ...++++.+++.+++|.
T Consensus 240 -~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 240 -TGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred -hCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 342 356666554322 34455666666666664
No 158
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=29.75 E-value=3.7e+02 Score=23.26 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCc----------CCcCCC--chHHHHHHHhhcCC-CCCeEEEeecCccccCCCCCCCCC
Q 018998 35 PEPDMIALIRHAINSGITFLDTS----------DIYGPH--TNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGD 101 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~G--~sE~~lG~aL~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 101 (347)
+.++..+..+.+.++|+.-+|.- +.||.. ...+.+-+.++... .-.+-|+.|+...+. ..
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~-------~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD-------DE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC-------Cc
Confidence 56778888888899999999853 345532 12344444444421 111456777643321 11
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeccCCCCC--CHHHHHHHHHHHHHcCCcceEecCcc-hHHHHHHHhcCCCeeEEee
Q 018998 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQT--PIEVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 178 (347)
Q Consensus 102 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 178 (347)
+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++.... +.+++.+++.....+.+++
T Consensus 138 -~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 138 -EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred -hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 12222 2234555675 555667653211 01123555566666555555554443 5556666655544555554
No 159
>PRK12569 hypothetical protein; Provisional
Probab=29.63 E-value=1.9e+02 Score=26.07 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=50.7
Q ss_pred eeccccccccCCCCCC--HHHHHHHHHHH-HHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCC--
Q 018998 20 GLGCMGMSALYGPPKP--EPDMIALIRHA-INSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDG-- 94 (347)
Q Consensus 20 ~lG~~~~g~~~~~~~~--~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~-- 94 (347)
+||.|.+| + +++...++..| +.+|+ |.| ....+-+.++-.....+-|-...+.....+
T Consensus 14 sfG~~~~g-------~~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFG 76 (245)
T PRK12569 14 GFGPWRIG-------DGVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFG 76 (245)
T ss_pred CCCCcCCC-------CccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCC
Confidence 67888875 4 67788888877 46676 566 456677776554455566666654433222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC
Q 018998 95 KYGYHGDPAYVRAACEASLKRLD 117 (347)
Q Consensus 95 ~~~~~~~~~~i~~~v~~sL~~Lg 117 (347)
+...+.+++.++..+..-+..|+
T Consensus 77 Rr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 77 RRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 33456777777777665555553
No 160
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=29.35 E-value=1.7e+02 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCc---ceEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhCCeEEEc
Q 018998 137 VTIGELKKLVEEGKI---KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 137 ~~~~~L~~l~~~G~i---r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~via~ 205 (347)
+.++.+.+|++.-.+ -..|=+.++...++.+++...++++|....-.-. ..-..+.+.|+.+|+.++.+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 346778888877542 2337777888999999998889999987765431 12357999999999998765
No 161
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=29.29 E-value=2e+02 Score=23.90 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~ 114 (347)
.++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =++++.|.-.... ..+...+...+++-|+
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~-------e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFE-------EKGTQEMDEEVRKELK 80 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccc-------cCCceecCHHHHHHHH
Confidence 4556667778888999999999999985 44444444433 1 2355555432221 1122345666788888
Q ss_pred HcCCC
Q 018998 115 RLDVD 119 (347)
Q Consensus 115 ~Lg~d 119 (347)
..|.+
T Consensus 81 erGa~ 85 (186)
T COG1751 81 ERGAK 85 (186)
T ss_pred HcCce
Confidence 88854
No 162
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=29.16 E-value=78 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCC
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGP 62 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 62 (347)
+...+.++...+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5678899999999999999999999964
No 163
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.85 E-value=2.8e+02 Score=27.35 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEee-ccCCC-----------CCCHHHH----HHHHHHHHHcCCcceEecCcchH
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQ-HRIDT-----------QTPIEVT----IGELKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~p~~-----------~~~~~~~----~~~L~~l~~~G~ir~iGvS~~~~ 161 (347)
-+.+.+.+.++..+ .|+.++|.+|.+ |.|.. ..+.++. ..+.+.|.+.|- ..+|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 46777888777766 589999999866 33321 0112222 245677788887 4589999854
No 164
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.69 E-value=1.4e+02 Score=23.14 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=33.5
Q ss_pred cCcchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEcccC
Q 018998 156 LSEASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 156 vS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~pl 208 (347)
.+.-+.+++..+....+++++-+-..--.+....++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 34455666666655433556555443333444568999999999999987543
No 165
>PRK10200 putative racemase; Provisional
Probab=28.67 E-value=2.2e+02 Score=25.17 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCC------------CCHHHHHHHHHHHHHcCCcceEecCcchHHHH
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ------------TPIEVTIGELKKLVEEGKIKYIGLSEASASTI 164 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 164 (347)
+.+++++-++..-.+.+.++++.+.+|.++.. .+.....+.++.|.+.| +..|.+.+.++...
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 45678888888888899999999999987432 23345567777777777 78999987765543
No 166
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.56 E-value=5.2e+02 Score=24.59 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=76.4
Q ss_pred cceeCCCCCcccCcceecccccccc--------CCC----CCCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHH
Q 018998 5 RRMKLGSQGLEVSAQGLGCMGMSAL--------YGP----PKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKA 72 (347)
Q Consensus 5 ~~~~Lg~tg~~vs~l~lG~~~~g~~--------~~~----~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~a 72 (347)
.+-..|.-.-.|-.||||..+-|.+ +.. .+|.++ ...+..-+.||+|+-++-.=.+ -..+|+..
T Consensus 5 ~~~vygeitgpIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~N--yk~vL~pl 80 (481)
T COG5310 5 NWPVYGEITGPIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRDN--YKDVLKPL 80 (481)
T ss_pred ccceeeeccCcEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChhh--HHHHHHHH
Confidence 3334444344577788888776532 111 123232 4455556889999976642222 24678888
Q ss_pred hhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCH-----HHHHHHHHHHHH
Q 018998 73 FKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPI-----EVTIGELKKLVE 147 (347)
Q Consensus 73 L~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~-----~~~~~~L~~l~~ 147 (347)
|++..-+-+.|---+.. +.- .+-+.++++++=|||-+.=-|+....+. ..+--+|.+.+.
T Consensus 81 l~~~~gqgf~vnLSvd~-----------~s~----Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~l 145 (481)
T COG5310 81 LKGVGGQGFCVNLSVDT-----------SSL----DLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVL 145 (481)
T ss_pred hhcCCCceEEEEeEecc-----------chh----HHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHH
Confidence 87755555555544422 222 2456788999999999887777554332 233345666666
Q ss_pred cCCcceEe
Q 018998 148 EGKIKYIG 155 (347)
Q Consensus 148 ~G~ir~iG 155 (347)
+.|-|..|
T Consensus 146 rEk~r~pg 153 (481)
T COG5310 146 REKRRNPG 153 (481)
T ss_pred HHhccCCC
Confidence 65655543
No 167
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=28.51 E-value=4.8e+02 Score=25.08 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHCCCC-eeeCcCCcCCCchHHHHHHHhhcC------CCCCeEEEeecCccccCCCCCCCCCHHHHHH
Q 018998 35 PEPDMIALIRHAINSGIT-FLDTSDIYGPHTNEILLGKAFKGG------FRERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~G~sE~~lG~aL~~~------~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (347)
+.+....+.+.+...|++ +++|.-.- +...+-++|+.. .+....+.-.+...+.+......+.++.++.
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t~----~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~ 150 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLITQ----PDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIRE 150 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccCC----CHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhC
Confidence 457788888889999998 66665322 222333333321 1111233333321111111222333444433
Q ss_pred H----HHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC
Q 018998 108 A----CEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 170 (347)
Q Consensus 108 ~----v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 170 (347)
- +++.++.-+ +.+-++.| .|.. +...+..+.|+++|.+-++|=|+-+.+++.++.+.
T Consensus 151 p~~~~~~~~~~~~~-~~i~~vTl-APE~----~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 151 PDVELFKKFLCEAG-GVITKVTL-APEE----DQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred cCHHHHHHHHHhcC-CCEEEEEE-CCCC----CChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 2 222222211 22333222 2322 33568888999999999999999999999888765
No 168
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=28.18 E-value=5.8e+02 Score=25.65 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCc
Q 018998 35 PEPDMIALIRHAINSGITFLDTS 57 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA 57 (347)
..++...+....-+.|+..+++.
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~ 47 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECW 47 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEec
Confidence 66788888888888999999875
No 169
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=28.07 E-value=4.4e+02 Score=25.00 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHCC-CCeeeCcCCcCCCchHHHHHHHhhcCC-CCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSG-ITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~G~sE~~lG~aL~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~s 112 (347)
+.++..+.-+.|-+.| .+|...|..++.|..=..+-++++... --.+-+.--+| ..+.+.. +-
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG----------~l~~eq~-----~~ 149 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG----------MLTEEQA-----EK 149 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC----------CCCHHHH-----HH
Confidence 5667777777788999 889999988874444444445544311 11122222222 2233333 34
Q ss_pred HHHcCCCccceEeeccCC----------CCCCHHHHHHHHHHHHHcCCcce----EecCcchHHHHH---HHhcCCCeeE
Q 018998 113 LKRLDVDCIDLYYQHRID----------TQTPIEVTIGELKKLVEEGKIKY----IGLSEASASTIR---RAHAVHPITA 175 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~----------~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~---~~~~~~~~~~ 175 (347)
|+.-|+|+. -|+.+ ...+.++-++.++.+++.|.=-. +|+..-..+.+. .+.+..+++.
T Consensus 150 L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pds 225 (335)
T COG0502 150 LADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDS 225 (335)
T ss_pred HHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCe
Confidence 667777764 45432 34567899999999999887554 345544444343 3334343333
Q ss_pred Eeeecccccc
Q 018998 176 VQLEWSLWTR 185 (347)
Q Consensus 176 ~q~~~n~~~~ 185 (347)
+++|.+.+
T Consensus 226 --VPIn~l~P 233 (335)
T COG0502 226 --VPINFLNP 233 (335)
T ss_pred --eeeeeecC
Confidence 44454443
No 170
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.99 E-value=4.6e+02 Score=23.81 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCc--C-----CCc-hHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHH-H
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIY--G-----PHT-NEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPA-Y 104 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y--g-----~G~-sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~-~ 104 (347)
.+.++..++.....+.||..+|....- . .+. .++.+...-+..++.++.......... ....-|. .
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~-----~~~~~p~~~ 92 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV-----GYRHYPDDV 92 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc-----CccCCCcHH
Confidence 367888888888889999999987421 0 122 234443333333433343333221100 0111222 2
Q ss_pred HHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEec-----CcchHHHHHHHhcC---CCeeEE
Q 018998 105 VRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGL-----SEASASTIRRAHAV---HPITAV 176 (347)
Q Consensus 105 i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv-----S~~~~~~l~~~~~~---~~~~~~ 176 (347)
.+..++.+. ..|++.|-+ ..+..+++...+..+..++.|+.-..++ +.++++.+.++.+. ..++.+
T Consensus 93 ~~~di~~~~-~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (275)
T cd07937 93 VELFVEKAA-KNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI 166 (275)
T ss_pred HHHHHHHHH-HcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 333344433 345555433 2233346777888899999996543334 34555555444322 334444
Q ss_pred eeeccccccchh--hchHHHHHHh-C--CeEEEcccCCC
Q 018998 177 QLEWSLWTRDVE--EDIIPTCREL-G--IGIVAYSPLGR 210 (347)
Q Consensus 177 q~~~n~~~~~~~--~~l~~~~~~~-g--i~via~~pl~~ 210 (347)
.+.=+.....+. ..++...+++ + +++.++.-++.
T Consensus 167 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~Gl 205 (275)
T cd07937 167 CIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGL 205 (275)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCCh
Confidence 433222222222 4566666654 3 44445544443
No 171
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=27.91 E-value=5e+02 Score=24.21 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHC-CCCeeeCcCCcCCC--chHHHHHHHh---hcC-CCCCeEEEeecCccccCCCCCCCCCHHHHHH
Q 018998 35 PEPDMIALIRHAINS-GITFLDTSDIYGPH--TNEILLGKAF---KGG-FRERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~G--~sE~~lG~aL---~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (347)
+.++..++++...++ ||+.+--+. |.. .+...+.+.+ ++. ....+.+.|+.-.. .+..+..
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~----------~p~rit~ 187 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA----------DPARVTP 187 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc----------ChhhcCH
Confidence 456777788776655 887553211 100 0122333333 322 23345667764321 2223333
Q ss_pred HHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCC
Q 018998 108 ACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGK 150 (347)
Q Consensus 108 ~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (347)
.+-+.|++.|. . ..+.+|........+++.++++.|++.|.
T Consensus 188 ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 188 ALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 44455666663 2 35677776544445778888888888885
No 172
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=27.83 E-value=3.1e+02 Score=29.78 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHcCC--------------------------CccceEeeccCCCCCCH---HHHHHHHHHHHHcCC
Q 018998 100 GDPAYVRAACEASLKRLDV--------------------------DCIDLYYQHRIDTQTPI---EVTIGELKKLVEEGK 150 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~L~~l~~~G~ 150 (347)
..+..+.+.++.+|+.++. ....+++|..|....+. ...|+...++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 3456788888888887774 34466677777665554 478999999999999
Q ss_pred cceEecCcchHHHHHHHhcCCC
Q 018998 151 IKYIGLSEASASTIRRAHAVHP 172 (347)
Q Consensus 151 ir~iGvS~~~~~~l~~~~~~~~ 172 (347)
++=+..|+.++.+.+.....
T Consensus 750 --aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred --EEEEEcCCHHHHHHHhhhhh
Confidence 99999999999998877643
No 173
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.68 E-value=1.5e+02 Score=28.82 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC---CCeeEEeeeccccccchhhchHHHHHHh--CCeEEEcccCCCC
Q 018998 137 VTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV---HPITAVQLEWSLWTRDVEEDIIPTCREL--GIGIVAYSPLGRG 211 (347)
Q Consensus 137 ~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~--gi~via~~pl~~G 211 (347)
.++++..+..++++ ++.+++++.+-..++. ..+|++=++..+ ..+.++..++. =+++++++ +.
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSRG---Gs 189 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSRG---GS 189 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecCC---HH
Confidence 45777777766655 7778888887666554 445665555444 34677777754 35566542 11
Q ss_pred cCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHH
Q 018998 212 FFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNEN 291 (347)
Q Consensus 212 ~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~n 291 (347)
++. + ++- ....=..+.+-++.+.+|+++|.+++ .|..+.....+.-++...|+.|.
T Consensus 190 ~~~-~--------------WM~--~n~~ENPlye~fD~lLeI~~~yDVtl-------SLGDglRPG~i~Da~D~aQi~El 245 (431)
T PRK13352 190 FLA-A--------------WML--HNNKENPLYEHFDYLLEILKEYDVTL-------SLGDGLRPGCIADATDRAQIQEL 245 (431)
T ss_pred HHH-H--------------HHH--HcCCcCchHHHHHHHHHHHHHhCeee-------eccCCcCCCccccCCcHHHHHHH
Confidence 211 0 000 00011134556789999999999872 23333333445666788888875
Q ss_pred H
Q 018998 292 I 292 (347)
Q Consensus 292 l 292 (347)
+
T Consensus 246 ~ 246 (431)
T PRK13352 246 I 246 (431)
T ss_pred H
Confidence 5
No 174
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.63 E-value=6.4e+02 Score=25.35 Aligned_cols=133 Identities=12% Similarity=0.100 Sum_probs=68.4
Q ss_pred hHHHHHHHhhc----CCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHH-HHH
Q 018998 65 NEILLGKAFKG----GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE-VTI 139 (347)
Q Consensus 65 sE~~lG~aL~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~-~~~ 139 (347)
+++.+-++|++ .+.+-++|.|-|..... .-+.+.+-+.++ +.+ -++++.+|.|.....-. ..-
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiI------GDDi~~v~~~~~---~~~---~~pVi~v~t~~f~g~~~~g~~ 136 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSIL------QEDLQNFVDRAS---IES---DSDVILADVNHYRVNELQAAD 136 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhhh------hcCHHHHHHHhh---ccc---CCCEEEeCCCCCcccHHHHHH
Confidence 44444445543 35666677777654321 112333322222 222 36899999997764322 222
Q ss_pred HHHHHHH------------------HcCCcceEecCc------chHHHHHHHhcCCCeeEEee----------------e
Q 018998 140 GELKKLV------------------EEGKIKYIGLSE------ASASTIRRAHAVHPITAVQL----------------E 179 (347)
Q Consensus 140 ~~L~~l~------------------~~G~ir~iGvS~------~~~~~l~~~~~~~~~~~~q~----------------~ 179 (347)
.+++.++ .+++|--||.++ .+..+++++++...+.++.+ .
T Consensus 137 ~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~ 216 (513)
T CHL00076 137 RTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAW 216 (513)
T ss_pred HHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCc
Confidence 2333333 235677888764 35677888877655555422 1
Q ss_pred ccccc-cchhhchHHHHHHh-CCeEEEcccCC
Q 018998 180 WSLWT-RDVEEDIIPTCREL-GIGIVAYSPLG 209 (347)
Q Consensus 180 ~n~~~-~~~~~~l~~~~~~~-gi~via~~pl~ 209 (347)
+|+.. +.....+.++.+++ |+.++...|++
T Consensus 217 ~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 217 FNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 22222 21122344555444 89888766765
No 175
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=27.60 E-value=4.9e+02 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHH
Q 018998 248 ECVNEIAANKGC------TPSQLALAWVHHQGDDVCPIPGTTKIANLNENI 292 (347)
Q Consensus 248 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl 292 (347)
.+|.++|++.|. ++.++.-.|.-... ...+..|+|+|+.+-+.+
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~-~vgitagaStP~~~i~~v 271 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVK-IIGVTAGASTPDWIIEEV 271 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEeccCCCHHHHHHH
Confidence 378889988874 77888888987665 466779999999775543
No 176
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=27.39 E-value=3e+02 Score=21.65 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCC---CccceEeeccCCCC-CCHHHHHHHHHHHHHc
Q 018998 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV---DCIDLYYQHRIDTQ-TPIEVTIGELKKLVEE 148 (347)
Q Consensus 77 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~---d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~ 148 (347)
+|=-+.|+-|++.. ...+..|++.+.+..+.+.. ...|++++-.+... .+..+..+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~--------AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK--------AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc--------hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34445566665433 34677888888888887642 35799999988765 3566777777777665
No 177
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.37 E-value=4.7e+02 Score=23.71 Aligned_cols=150 Identities=12% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHH--HHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHH
Q 018998 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLG--KAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (347)
Q Consensus 37 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG--~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~ 114 (347)
+...+.++.--+.|+.+|..++.=+.+..+..+. ..|+... .+-....+.- .+.++..++..+... .
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~--g~~~i~Hlt~--------r~~n~~~l~~~L~~~-~ 83 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKET--GIPTVPHLTC--------IGATREEIREILREY-R 83 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhc--CCCeeEEeee--------cCCCHHHHHHHHHHH-H
Confidence 4555556665678999999987655433343333 3344211 1111111111 134666677766644 6
Q ss_pred HcCCCccceEeecc-CC------CCCCHHHHHHHHHHHHHcCCcceEecCcch--------H-HHHHHHhcC----CCee
Q 018998 115 RLDVDCIDLYYQHR-ID------TQTPIEVTIGELKKLVEEGKIKYIGLSEAS--------A-STIRRAHAV----HPIT 174 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~-p~------~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~--------~-~~l~~~~~~----~~~~ 174 (347)
.+|++. ++.|-. +. .........+-++.+++..---+||+..++ . .+++.+... ..+-
T Consensus 84 ~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~ 161 (272)
T TIGR00676 84 ELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYA 161 (272)
T ss_pred HCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 777442 333332 21 112223344444445543223577776532 1 234433332 3455
Q ss_pred EEeeeccccccchhhchHHHHHHhCCeE
Q 018998 175 AVQLEWSLWTRDVEEDIIPTCRELGIGI 202 (347)
Q Consensus 175 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v 202 (347)
+-|.-|+. +.-.++++.|++.|+.+
T Consensus 162 iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 162 ITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred eeccccCH---HHHHHHHHHHHHcCCCC
Confidence 55655554 22357888999997764
No 178
>PHA02128 hypothetical protein
Probab=27.28 E-value=2e+02 Score=22.24 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCcceEecCcchHHHHHHHhc-----------------C-CCeeEEee---eccccccchhhchHHH
Q 018998 136 EVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA-----------------V-HPITAVQL---EWSLWTRDVEEDIIPT 194 (347)
Q Consensus 136 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~-----------------~-~~~~~~q~---~~n~~~~~~~~~l~~~ 194 (347)
...++.-.|+..+|-+|-|-+......+...+.. . ..+...++ +|.+..|...+++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 3566777888889988888876554444433322 2 22333333 5666666566799999
Q ss_pred HHHhCCeEEEc
Q 018998 195 CRELGIGIVAY 205 (347)
Q Consensus 195 ~~~~gi~via~ 205 (347)
+--+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998764
No 179
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.02 E-value=3.7e+02 Score=22.31 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCCCC-CeEEEeecCccccCCCCCCCCCHHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL 113 (347)
+.+...++++.+.+.|++-+-+.. .++..+.+. .++ ++-|..+++..... ...+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~------~~~~~~~~~a~~a- 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL------TTTEVKVAEVEEA- 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC------CcHHHHHHHHHHH-
Confidence 678899999999999999887653 333333333 234 57777887654210 1134444444444
Q ss_pred HHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHc
Q 018998 114 KRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEE 148 (347)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~ 148 (347)
.++|.|.+.+..-+........++..+.++++.+.
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 44576555543222111111134555555555443
No 180
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=27.01 E-value=5.1e+02 Score=23.98 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=51.4
Q ss_pred hhchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCC------CH
Q 018998 188 EEDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGC------TP 261 (347)
Q Consensus 188 ~~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~------s~ 261 (347)
++.+.+.+.+-.+-++.-++-... ..+|.++|+++|. ++
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSN-----------------------------------s~rL~eiA~~~g~~aylId~~ 247 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSN-----------------------------------SNRLAEIAKRHGKPAYLIDDA 247 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCcc-----------------------------------HHHHHHHHHHhCCCeEEeCCh
Confidence 356777777777777764444332 1379999999987 67
Q ss_pred HHHHHHHHHcCCCCeeeccCCCcHHHHHHHHh
Q 018998 262 SQLALAWVHHQGDDVCPIPGTTKIANLNENIE 293 (347)
Q Consensus 262 ~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~ 293 (347)
.++=..|.-... ...+-.|+|.|+-|-+++-
T Consensus 248 ~ei~~~w~~~~~-~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 248 EEIDPEWLKGVK-TVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HhCCHHHhcCcc-EEEEecCCCCCHHHHHHHH
Confidence 888888988854 4567799999999887664
No 181
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=26.99 E-value=4.7e+02 Score=23.59 Aligned_cols=104 Identities=14% Similarity=0.006 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEe
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (347)
..+++.-.+-.+-..+-++++.|=|=.+..+... .+..+++++.++|+++|.+-. =+++.++...+++.+... ++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~G~-~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDAGC-AAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcCC-CEeC
Confidence 4567777777888888889999888888877655 356799999999999998543 345556666666665533 4443
Q ss_pred eeccccccc--h-hhchHHHHHHh-CCeEEE
Q 018998 178 LEWSLWTRD--V-EEDIIPTCREL-GIGIVA 204 (347)
Q Consensus 178 ~~~n~~~~~--~-~~~l~~~~~~~-gi~via 204 (347)
-.-++...+ . ..+++...++. ++.|++
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 322222211 1 13555666654 677776
No 182
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=26.94 E-value=5.2e+02 Score=24.04 Aligned_cols=85 Identities=8% Similarity=0.022 Sum_probs=59.3
Q ss_pred cceEeeccCCCCCCHHHHHHHHHHHHHcCCc-ceEecCcchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhC
Q 018998 121 IDLYYQHRIDTQTPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELG 199 (347)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (347)
.++.++-.|-... .++.+.+|.+.-.+ -+.|=|-++...+..++.....+++|+.....-. -..+++.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4666676665432 35667777765444 3566677888899998888788888887765443 236788999999
Q ss_pred CeEEEcccCCCC
Q 018998 200 IGIVAYSPLGRG 211 (347)
Q Consensus 200 i~via~~pl~~G 211 (347)
+.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999987655443
No 183
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=26.92 E-value=5.4e+02 Score=24.71 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCcceEecCcchHHHHHHHhcC
Q 018998 140 GELKKLVEEGKIKYIGLSEASASTIRRAHAV 170 (347)
Q Consensus 140 ~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 170 (347)
+.++.|+++|.+-++|=|+-+.++..++.+.
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 209 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRA 209 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHc
Confidence 8889999999999999999999999888765
No 184
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=26.92 E-value=4.6e+02 Score=23.47 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=35.1
Q ss_pred HHHHHHcCCcceEec--CcchHHHHHHHhcC-CCeeEEeeeccccccchhhchHHHHHHhCCeEEEcc
Q 018998 142 LKKLVEEGKIKYIGL--SEASASTIRRAHAV-HPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 142 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~~ 206 (347)
|.+..++|+. .+|+ .-.++..++.+... ..+.++-.++++.+.+.-..++..++..|+.++.+-
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv 69 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRP 69 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEEC
Confidence 4455566775 3443 33345555544443 344455557777655433456666766677766653
No 185
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=26.91 E-value=4.4e+02 Score=23.21 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=71.9
Q ss_pred CCeeeC-cCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccC
Q 018998 51 ITFLDT-SDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (347)
Q Consensus 51 i~~~Dt-A~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p 129 (347)
++.++. +..|+.. +++.+.++.+. -++++..+.|+.....- ........+.+.+.+-+.++.|| +.+..+++.-|
T Consensus 19 F~~VEvn~TFY~~P-~~~t~~~W~~~-~p~~F~F~vK~~~~iTH-~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~P 94 (230)
T PF01904_consen 19 FNTVEVNSTFYRIP-SPETVARWREQ-TPEGFRFSVKAPQLITH-ERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFP 94 (230)
T ss_dssp -SEEEE-HHCCSSS--HHHHHHHHCT-S-TT-EEEEE--CCCCC-CCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--
T ss_pred CCeEEECcccCCCC-CHHHHHHHHhh-CCCCeEEEEeccHHhee-cccccccHHHHHHHHHHHHHHHh-hcceEEEEEcC
Confidence 555554 3466654 66788888877 45789999998654321 01111235666566666999999 99999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEc
Q 018998 130 DTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 130 ~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~ 205 (347)
..-....+.++.|..+.+.-. ....-.+.++.--+. .+++++.++++|+..+.-
T Consensus 95 psf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 95 PSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVIA 148 (230)
T ss_dssp TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEE
T ss_pred CCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEEe
Confidence 764445666666666655422 111233334333233 357899999999987753
No 186
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=26.61 E-value=96 Score=26.28 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCcceEecC
Q 018998 135 IEVTIGELKKLVEEGKIKYIGLS 157 (347)
Q Consensus 135 ~~~~~~~L~~l~~~G~ir~iGvS 157 (347)
.+++-+++++++++| |+++.||
T Consensus 133 ~~~v~~~~~~l~~~g-v~avAV~ 154 (176)
T PF05378_consen 133 EDEVREALRELKDKG-VEAVAVS 154 (176)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEE
Confidence 456778889998887 8888887
No 187
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.50 E-value=6.1e+02 Score=24.68 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=80.7
Q ss_pred ccCcceeccccccccCCCCCCHHHHHHHHHHHHHCCCCeeeCcCCcCCC----chHHHHHHHhhc-----CCCCCeEEEe
Q 018998 15 EVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPH----TNEILLGKAFKG-----GFRERAELAT 85 (347)
Q Consensus 15 ~vs~l~lG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G----~sE~~lG~aL~~-----~~R~~~~i~t 85 (347)
.|-+++.|-=.. ++.-....++.+.+..|+++|= ...|+.. .+-+.+.++|.+ ...+++++++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 344555543222 2333345678888888888873 4466553 366777777654 2678888887
Q ss_pred ecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCc---c--h
Q 018998 86 KFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSE---A--S 160 (347)
Q Consensus 86 K~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~--~ 160 (347)
=+... |+- +=.+|.+=| --++|-+|... +.++...... =.||++-+=. | +
T Consensus 134 GC~qA--------------Ie~-~i~~LA~p~----aNILlPrPGfp--~Y~~~a~~~~----lEVR~ydlLPe~~weID 188 (447)
T KOG0259|consen 134 GCSQA--------------IEL-AISSLANPG----ANILLPRPGFP--LYDTRAIYSG----LEVRYYDLLPEKDWEID 188 (447)
T ss_pred cchHH--------------HHH-HHHHhcCCC----CceecCCCCCc--hHHHhhhhcC----ceeEeecccCcccceec
Confidence 76321 211 122333333 12233333321 1211111111 1234433321 1 2
Q ss_pred HHHHHHHhcCCCeeEE-eeeccc----cccchhhchHHHHHHhCCeEEEcccCCC
Q 018998 161 ASTIRRAHAVHPITAV-QLEWSL----WTRDVEEDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 161 ~~~l~~~~~~~~~~~~-q~~~n~----~~~~~~~~l~~~~~~~gi~via~~pl~~ 210 (347)
.+.++.+++...+..+ .++.|+ +.....+.+.+.|++.|+-||+--....
T Consensus 189 L~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~ 243 (447)
T KOG0259|consen 189 LDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGH 243 (447)
T ss_pred hHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcce
Confidence 3345555554443333 233433 2333457888999999998887544443
No 188
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.34 E-value=3.9e+02 Score=22.38 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=34.0
Q ss_pred hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCH
Q 018998 189 EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTP 261 (347)
Q Consensus 189 ~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 261 (347)
+.+++.++++|..++..+|....-+..+. ...+......+.++++|+++|+..
T Consensus 97 ~~ii~~~~~~~~~~il~tp~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 97 RRYIAEARAKGATPILVTPVTRRTFDEGG--------------------KVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHCCCeEEEECCccccccCCCC--------------------cccccchhHHHHHHHHHHHhCCCE
Confidence 36888899999998888776532111000 001234556678999999999864
No 189
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=26.31 E-value=1.5e+02 Score=17.68 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Q 018998 244 QKLFECVNEIAANKGCTPSQLALA 267 (347)
Q Consensus 244 ~~~~~~l~~ia~~~g~s~~qlal~ 267 (347)
.+..+.+.++|++.|+|.+++.-.
T Consensus 8 ~~~~~~l~~~a~~~g~s~s~~ir~ 31 (39)
T PF01402_consen 8 DELYERLDELAKELGRSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHH
Confidence 455678999999999999887643
No 190
>PLN02522 ATP citrate (pro-S)-lyase
Probab=26.19 E-value=1.5e+02 Score=30.59 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=46.1
Q ss_pred CchHHHHHHHhhcCCCCCeEEEeecCcccc---CC-CCCCCCC----HHHHHHHHHHHHHHcCCCccceEeeccCCCCCC
Q 018998 63 HTNEILLGKAFKGGFRERAELATKFGIGIV---DG-KYGYHGD----PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP 134 (347)
Q Consensus 63 G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~---~~-~~~~~~~----~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~ 134 (347)
|..|+.+.+++++..+.+.+|+-|.|.... .+ ...+..+ -...-+..+..|++-|+ +.++....
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv--------~vv~s~~E 305 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA--------IVPTSFEA 305 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC--------eEeCCHHH
Confidence 567888888888756888999999987651 11 1111100 01122446677777773 22222111
Q ss_pred H-HHHHHHHHHHHHcCCcce
Q 018998 135 I-EVTIGELKKLVEEGKIKY 153 (347)
Q Consensus 135 ~-~~~~~~L~~l~~~G~ir~ 153 (347)
+ +-+.+.|++|+.+|.|.-
T Consensus 306 l~~~~~~~~~~~~~~~~~~~ 325 (608)
T PLN02522 306 LEAAIKETFEKLVEEGKIIP 325 (608)
T ss_pred HHHHHHHHHHHHHhCCceee
Confidence 2 233456677777666654
No 191
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.08 E-value=2.8e+02 Score=27.02 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=67.6
Q ss_pred HHHHHHHHCCCCeeeCcCCcCC-CchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 018998 41 ALIRHAINSGITFLDTSDIYGP-HTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVD 119 (347)
Q Consensus 41 ~~l~~A~~~Gi~~~DtA~~Yg~-G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d 119 (347)
.++++++++|- +-..=.||. |..-..|++.|+......+.-.+-+ ..+...++..++++.+.++..
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-----------~~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-----------TSGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----------cccHHHHHHHHHHHHHHHhcC
Confidence 36777887763 222224665 5667788888877433333322222 224678999999998888866
Q ss_pred ccceEee---ccCCCCCCHHHHHHHHHHHHHcCCcceEecCcc
Q 018998 120 CIDLYYQ---HRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEA 159 (347)
Q Consensus 120 ~iDl~~l---H~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~ 159 (347)
+=-+++| |+.+- ..-++|.-.++.|.|-.||.++-
T Consensus 104 r~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 104 RRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred CceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCC
Confidence 6566665 44432 45688889999999999999864
No 192
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=25.48 E-value=4.6e+02 Score=22.96 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHCCCCeee
Q 018998 36 EPDMIALIRHAINSGITFLD 55 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~D 55 (347)
.|.....++.|++.|+..|+
T Consensus 14 pENTl~Af~~A~~~G~d~iE 33 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFE 33 (237)
T ss_pred CccHHHHHHHHHHhCCCEEE
Confidence 47788899999999999885
No 193
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=25.41 E-value=4.2e+02 Score=25.87 Aligned_cols=61 Identities=11% Similarity=-0.078 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC-------CCHH---HHH-HHHHHHHHcCCcceEecCcchH
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-------TPIE---VTI-GELKKLVEEGKIKYIGLSEASA 161 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~-------~~~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (347)
.-+.+.+++.++..+ +|+.++|.++.+.-.... ...+ +.+ .+.+.|.+.|- +.+++++|..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 347788888887776 589999999987533221 0112 222 45566677775 5589988764
No 194
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.36 E-value=5.6e+02 Score=23.93 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHCCCCeee----------CcCCcCCC--chHHHHHHHhhcC-CCCCeEEEeecCccccCCCCCCCCC
Q 018998 35 PEPDMIALIRHAINSGITFLD----------TSDIYGPH--TNEILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGD 101 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~G--~sE~~lG~aL~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 101 (347)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...+.+. .+
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~-----~~ 139 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL-----DS 139 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc-----ch
Confidence 667788888888889999999 33345532 2234455555442 112456889986543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeccCCC-CCC---------HHHHHHHHHHHHHcC-CcceEecCc-chHHHHHHHhc
Q 018998 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDT-QTP---------IEVTIGELKKLVEEG-KIKYIGLSE-ASASTIRRAHA 169 (347)
Q Consensus 102 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~-~~~---------~~~~~~~L~~l~~~G-~ir~iGvS~-~~~~~l~~~~~ 169 (347)
.+.. ..+-+.++..| +|.+.+|.-.. ... ..-.|+...++++.- .|--||..+ ++.+++.+.+.
T Consensus 140 ~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~ 215 (318)
T TIGR00742 140 YEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS 215 (318)
T ss_pred HHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh
Confidence 1222 23344555555 67788996542 000 012466666676654 566666654 45666666553
Q ss_pred CCCeeEEee
Q 018998 170 VHPITAVQL 178 (347)
Q Consensus 170 ~~~~~~~q~ 178 (347)
..+.+|+
T Consensus 216 --g~dgVMi 222 (318)
T TIGR00742 216 --HVDGVMV 222 (318)
T ss_pred --CCCEEEE
Confidence 3556655
No 195
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.11 E-value=6.5e+02 Score=24.53 Aligned_cols=81 Identities=9% Similarity=0.070 Sum_probs=55.1
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHHHHcC---Cc-ceEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHH
Q 018998 122 DLYYQHRIDTQTPIEVTIGELKKLVEEG---KI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCR 196 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G---~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~ 196 (347)
++.++-.|-.. +.++.+.+|++.. .| -+.|=+.++...+++++....++++|....-.-. ..-..+.+.|+
T Consensus 267 ~l~~iEEP~~~----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~ 342 (415)
T cd03324 267 KPWWIEEPTSP----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAA 342 (415)
T ss_pred CCCEEECCCCC----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHH
Confidence 55566666543 2456666676654 22 2445466788899999888889999987765432 12357999999
Q ss_pred HhCCeEEEcc
Q 018998 197 ELGIGIVAYS 206 (347)
Q Consensus 197 ~~gi~via~~ 206 (347)
.+|+.++.+.
T Consensus 343 a~gi~~~pH~ 352 (415)
T cd03324 343 KFGVPVCPHA 352 (415)
T ss_pred HcCCeEEEcC
Confidence 9999987763
No 196
>PRK12677 xylose isomerase; Provisional
Probab=25.09 E-value=3.9e+02 Score=25.78 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=28.8
Q ss_pred cceecccccccc----CCCC-CCHHHHHHHHHHHHHCCCCeeeCc
Q 018998 18 AQGLGCMGMSAL----YGPP-KPEPDMIALIRHAINSGITFLDTS 57 (347)
Q Consensus 18 ~l~lG~~~~g~~----~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 57 (347)
+++||.|.+|+. ||.. .+.-...+.++.+-+.|+..+..-
T Consensus 7 ~f~~~~w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh 51 (384)
T PRK12677 7 KFSFGLWTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFH 51 (384)
T ss_pred eeEEEEeeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEec
Confidence 678999988843 4443 233357788999999999987654
No 197
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=25.07 E-value=3.3e+02 Score=25.05 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=13.1
Q ss_pred HHHHHHCCCCeeeCcCCc
Q 018998 43 IRHAINSGITFLDTSDIY 60 (347)
Q Consensus 43 l~~A~~~Gi~~~DtA~~Y 60 (347)
+..=+++|||+||-=..|
T Consensus 36 i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 36 VSTQLALGARYFDFRPGY 53 (281)
T ss_pred HHHHHhcCcEEEEEEeee
Confidence 455678999999974433
No 198
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.04 E-value=6e+02 Score=24.16 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCcchHHHHHHHhcCCCeeEE
Q 018998 98 YHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAV 176 (347)
Q Consensus 98 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 176 (347)
..++.+... .+-+.|.++|+++|.+- .|.. -+.-++.++++.+.+. .+..+++....+.++.+.+.. ++.+
T Consensus 18 ~~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i 89 (365)
T TIGR02660 18 VAFTAAEKL-AIARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAV 89 (365)
T ss_pred CCCCHHHHH-HHHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEE
Confidence 345665544 45666999999999985 2322 1334677777776643 667777767778888777652 2333
Q ss_pred eeeccccc--------cchh------hchHHHHHHhCCeEE
Q 018998 177 QLEWSLWT--------RDVE------EDIIPTCRELGIGIV 203 (347)
Q Consensus 177 q~~~n~~~--------~~~~------~~l~~~~~~~gi~vi 203 (347)
.+-...-+ ...+ .+.+++++++|..+.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33322211 1111 368889999998754
No 199
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.98 E-value=2.4e+02 Score=27.73 Aligned_cols=15 Identities=0% Similarity=-0.028 Sum_probs=9.3
Q ss_pred CeEEEcccCCCCcCC
Q 018998 200 IGIVAYSPLGRGFFS 214 (347)
Q Consensus 200 i~via~~pl~~G~l~ 214 (347)
..+++.++=+.|.+.
T Consensus 317 ~~~iglG~gA~s~~~ 331 (453)
T PRK09249 317 CDLIGLGVSAISRIG 331 (453)
T ss_pred CeEEEECcCcccCCC
Confidence 456666666666554
No 200
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.89 E-value=1.5e+02 Score=22.40 Aligned_cols=30 Identities=27% Similarity=0.182 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 018998 241 EHNQKLFECVNEIAANKGCTPSQLALAWVH 270 (347)
Q Consensus 241 ~~~~~~~~~l~~ia~~~g~s~~qlal~~~l 270 (347)
+.+..+.....+||++.|+++.++.-.+.-
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a~ 73 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAAQ 73 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567788889999999999999998876654
No 201
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=24.69 E-value=94 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.025 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHH
Q 018998 248 ECVNEIAANKGCTPSQLALAW 268 (347)
Q Consensus 248 ~~l~~ia~~~g~s~~qlal~~ 268 (347)
+.+.++.++.|++..++|-..
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 356666677788887777543
No 202
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.68 E-value=4.5e+02 Score=22.53 Aligned_cols=145 Identities=14% Similarity=0.031 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcC----CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGG----FRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~ 110 (347)
|..++.+++..+++.|+...|.- +..+..+++.. .+++++++-- ....+.++..+.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e------------~~as~~~~~~l~ 68 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPEL------------LMAADAMKAGLD 68 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHH------------HHHHHHHHHHHH
Confidence 77899999999999997655432 23444444331 3344443322 223344555555
Q ss_pred HHHHHcCCCcc---ceEeeccCCCCCCHHHHHHHHHHHHHcCCc-ceEecCcchHHHHHHHhcCCCeeEEeeeccccccc
Q 018998 111 ASLKRLDVDCI---DLYYQHRIDTQTPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRD 186 (347)
Q Consensus 111 ~sL~~Lg~d~i---Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 186 (347)
.....+..... --+++-.+..+...-...=.-.-|+..|.= .++| .+.+++.+.+.+....++++-+-.+.....
T Consensus 69 ~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~ 147 (201)
T cd02070 69 LLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTM 147 (201)
T ss_pred HHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccH
Confidence 55555543221 123444443333222222222345567753 5678 556777777777777777776655433221
Q ss_pred -hhhchHHHHHHhCC
Q 018998 187 -VEEDIIPTCRELGI 200 (347)
Q Consensus 187 -~~~~l~~~~~~~gi 200 (347)
.-..+++..++.+.
T Consensus 148 ~~~~~~i~~lr~~~~ 162 (201)
T cd02070 148 GGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHCCC
Confidence 12578888888754
No 203
>PRK05588 histidinol-phosphatase; Provisional
Probab=24.65 E-value=5e+02 Score=23.08 Aligned_cols=80 Identities=9% Similarity=0.191 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCCCeeeCcCCcCCC---------chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHH
Q 018998 36 EPDMIALIRHAINSGITFLDTSDIYGPH---------TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVR 106 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G---------~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (347)
.....+.+++|.+.|+..+ .++|.... .-+..+ +.++..+.-++.+-..++.. ++ ..
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~-----------~~-~~ 80 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME-----------KD-LI 80 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc-----------CC-CH
Confidence 3457889999999999999 88774210 011111 11122222333333333211 11 24
Q ss_pred HHHHHHHHHcCCCccceEeeccCC
Q 018998 107 AACEASLKRLDVDCIDLYYQHRID 130 (347)
Q Consensus 107 ~~v~~sL~~Lg~d~iDl~~lH~p~ 130 (347)
..+++.|++...||+ +.-+|..+
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeC
Confidence 455777887787777 78889854
No 204
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=24.52 E-value=4.8e+02 Score=24.37 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHH-HHHHHHHHHHHcCCcceEecCc--chHHHHHHHhcCCCeeEEe
Q 018998 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE-VTIGELKKLVEEGKIKYIGLSE--ASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 101 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~~L~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q 177 (347)
-...+++.++...++||...+.+-+--..++..-+. .+-+.|++|.++| ++.|=|.. |..++++-+.+
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e-------- 275 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE-------- 275 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC--------
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHH--------
Confidence 356788888888899987766665554444422222 4678899999999 55554321 23333333311
Q ss_pred eeccccccchhhchHHHHHHhCCeEEEcccCCC
Q 018998 178 LEWSLWTRDVEEDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 178 ~~~n~~~~~~~~~l~~~~~~~gi~via~~pl~~ 210 (347)
.+.+..+.+.++|+.-..+-|..+
T Consensus 276 ---------idie~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 276 ---------IDIEYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp ---------CCCHHHHHHHHHTCCEEEE---ST
T ss_pred ---------HHHHHHHHHHHcCCceEEEeCCCC
Confidence 123567889999997777666654
No 205
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=24.48 E-value=5.7e+02 Score=23.64 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCC-------Cc----hHHHHHHHhh---c----CCCCCeEEEeecCccccC---
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGP-------HT----NEILLGKAFK---G----GFRERAELATKFGIGIVD--- 93 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------G~----sE~~lG~aL~---~----~~R~~~~i~tK~~~~~~~--- 93 (347)
+++..+++-+..+++|-..+.|.....+ |. .+++...+++ + ..+.+.+|+.-+++....
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 4455577777778999999999875433 21 2334443332 1 123357888888875321
Q ss_pred C---CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHc--CCcceEecCc---------c
Q 018998 94 G---KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEE--GKIKYIGLSE---------A 159 (347)
Q Consensus 94 ~---~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~---------~ 159 (347)
+ ...+..+.+.+++...+..+.|--.-+|++++--... ++|...+++.+++. ++--.+.++. .
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~---~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~ 200 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPN---LDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGT 200 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCC---HHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCC
Confidence 1 1112357788888888888888556699999875544 45555555555544 4433343332 2
Q ss_pred hHHHHHHHh-cCCCeeEEeeeccccccchhhchHHHHHHh-CCeEEEc
Q 018998 160 SASTIRRAH-AVHPITAVQLEWSLWTRDVEEDIIPTCREL-GIGIVAY 205 (347)
Q Consensus 160 ~~~~l~~~~-~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~-gi~via~ 205 (347)
+.+.....+ +...++.+-+++. ....-..+++...+. +..+++|
T Consensus 201 ~~~~~~~~l~~~~~~~~iGiNC~--~p~~~~~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 201 PLAEAAALLAASPQVVAVGVNCT--APELVTAAIAALRAVTDKPLVVY 246 (304)
T ss_pred CHHHHHHHHhcCCCceEEEecCC--CHHHHHHHHHHHHhccCCcEEEE
Confidence 333333333 3234677776664 222123444444332 4444444
No 206
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=24.43 E-value=5.9e+02 Score=24.88 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=53.4
Q ss_pred cceEeeccCCCCCCHHHHHHHHHHHHHcC--CcceEecCc-c-hHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHH
Q 018998 121 IDLYYQHRIDTQTPIEVTIGELKKLVEEG--KIKYIGLSE-A-SASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTC 195 (347)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~L~~l~~~G--~ir~iGvS~-~-~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~ 195 (347)
.+++++-.|-.. +.++.+.+|.+.- .+.-.|=-. . ++..++.+++....+++|+..+-.-. ..-.++.+.|
T Consensus 278 ~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA 353 (425)
T TIGR01060 278 YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELA 353 (425)
T ss_pred CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHH
Confidence 367777776543 3466777776654 454333322 2 58899999888888999888775431 1235789999
Q ss_pred HHhCCeEEE
Q 018998 196 RELGIGIVA 204 (347)
Q Consensus 196 ~~~gi~via 204 (347)
+.+|+.++.
T Consensus 354 ~~~Gi~~vv 362 (425)
T TIGR01060 354 KKAGYTAVI 362 (425)
T ss_pred HHcCCcEEE
Confidence 999998554
No 207
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.42 E-value=6.1e+02 Score=24.02 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHH--HHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEI--LLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~--~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~s 112 (347)
+.++..+.++.+.+.|++.|=.- .++...-++ ..=+++++.--+++.|..=.. ..++.+...+ +-+.
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan---------~~~~~~~A~~-~~~~ 211 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA---------HWYSRADALR-LGRA 211 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC---------CCcCHHHHHH-HHHH
Confidence 55677788888899999988652 121100111 122233332222333332221 1234443322 2233
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcch-HHHHHHHhcCCCeeEEeeecccccc-chhh
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEAS-ASTIRRAHAVHPITAVQLEWSLWTR-DVEE 189 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 189 (347)
|+.+ ++.++-.|-.. +.++.+.+|+++-.|. ..|=+-++ ..+++.+++...++++|+..+..-. ..-.
T Consensus 212 l~~~-----~l~~iEeP~~~----~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ 282 (368)
T cd03329 212 LEEL-----GFFWYEDPLRE----ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAM 282 (368)
T ss_pred hhhc-----CCCeEeCCCCc----hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHH
Confidence 3443 44455555432 2346777888875554 22334456 8888888888888999988776422 2235
Q ss_pred chHHHHHHhCCeEEEcc
Q 018998 190 DIIPTCRELGIGIVAYS 206 (347)
Q Consensus 190 ~l~~~~~~~gi~via~~ 206 (347)
.+...|+++|+.++.++
T Consensus 283 ~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 283 KTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 89999999999987644
No 208
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=24.35 E-value=3.5e+02 Score=21.22 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCC--CccceEeeccCCCC-CCHHHHHHHHHHHHHc
Q 018998 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV--DCIDLYYQHRIDTQ-TPIEVTIGELKKLVEE 148 (347)
Q Consensus 77 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~--d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~ 148 (347)
+|=-+.|+-|++.. ...+..+++.+.+..+.... .-.|++++..+... .+..++.+.|..|..+
T Consensus 44 ~R~G~~VsKK~~~~--------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR--------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc--------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34445666664432 34577788888888775542 34699999988654 3455666666655543
No 209
>PRK00208 thiG thiazole synthase; Reviewed
Probab=24.29 E-value=5.4e+02 Score=23.29 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEe
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (347)
..+++.-.+-.+-..+-++++.|=|=.+.++... .+..+++++.++|+++|.+-. =+++.++...+++.+..+ ++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~G~-~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEAGC-AAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcCC-CEeC
Confidence 4567777777888888889998888777777654 456799999999999998543 345556666666665533 4443
Q ss_pred eeccccccc--h-hhchHHHHHHh-CCeEEE
Q 018998 178 LEWSLWTRD--V-EEDIIPTCREL-GIGIVA 204 (347)
Q Consensus 178 ~~~n~~~~~--~-~~~l~~~~~~~-gi~via 204 (347)
-.-++.-.+ . ..++++..++. ++.|++
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 211222111 0 13456666664 777776
No 210
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.98 E-value=3.5e+02 Score=24.15 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=30.3
Q ss_pred hHHHHHHHhcCCCeeEEeeeccc-------cccchhhchHHHHHHhCCeEEEcccCCCC
Q 018998 160 SASTIRRAHAVHPITAVQLEWSL-------WTRDVEEDIIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 160 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~l~~~~~~~gi~via~~pl~~G 211 (347)
+..+.-+.++...++.+++..+. +.....+.+.+.+++.|+.+.++.|...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 33444444444556666653211 11112256888999999999998876543
No 211
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=23.95 E-value=2.9e+02 Score=23.47 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=63.1
Q ss_pred HCCCCeeeCcC--------CcCCCchHHHHHHHhhcCCCCCeEEEeecCcccc-CCCCCC--CCCHHHHHHHHHHHHHHc
Q 018998 48 NSGITFLDTSD--------IYGPHTNEILLGKAFKGGFRERAELATKFGIGIV-DGKYGY--HGDPAYVRAACEASLKRL 116 (347)
Q Consensus 48 ~~Gi~~~DtA~--------~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~-~~~~~~--~~~~~~i~~~v~~sL~~L 116 (347)
.++|-++||-. .|. |+.+..+-..|++ .|=++.|.++-...|. +|.... ...+..+.+-+++.|++-
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~ 155 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEEN 155 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHh
Confidence 34999999864 332 3344566677776 4666766666433333 332222 235677888888888888
Q ss_pred CCCccceEeeccCCCCCCHHHHHHHHHHHHHcC
Q 018998 117 DVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEG 149 (347)
Q Consensus 117 g~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G 149 (347)
+..| +.+..+++........++.+++..++
T Consensus 156 ~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 156 NIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 7655 44566777666778888999888776
No 212
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.86 E-value=5.6e+02 Score=23.32 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCC--C-CCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEE
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDT--Q-TPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAV 176 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~--~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 176 (347)
++.+ -+..+-+.|.++|+++|++-..-.|.. . .+.++....+.. ...++..++. .....++.+.+.. ++.+
T Consensus 17 ~s~e-~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i 90 (274)
T cd07938 17 IPTE-DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEV 90 (274)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEE
Confidence 4444 455677779999999999974433331 1 233444444443 2246666665 3556787777653 2333
Q ss_pred eeeccccc--------cc------hhhchHHHHHHhCCeEEE
Q 018998 177 QLEWSLWT--------RD------VEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 177 q~~~n~~~--------~~------~~~~l~~~~~~~gi~via 204 (347)
.+..+.-+ +. .-.+.+++++++|+.+..
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 33322211 11 113578899999998864
No 213
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.85 E-value=6.1e+02 Score=23.77 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=58.6
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeecccccc-chhhchHHHHHHhC
Q 018998 122 DLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DVEEDIIPTCRELG 199 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 199 (347)
++.++-.|-+. +.++.+.+|++...|. +.|=+.++...+.++++...++++|...+..-. ..-..+.+.|+.+|
T Consensus 198 ~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g 273 (341)
T cd03327 198 ELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYG 273 (341)
T ss_pred CCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 55566655442 3466778888887665 566677889999999988889999987665421 12358999999999
Q ss_pred CeEEEcc
Q 018998 200 IGIVAYS 206 (347)
Q Consensus 200 i~via~~ 206 (347)
+.++.++
T Consensus 274 ~~~~~h~ 280 (341)
T cd03327 274 VPVVPHA 280 (341)
T ss_pred Ceecccc
Confidence 9977653
No 214
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.80 E-value=1.9e+02 Score=29.29 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=42.2
Q ss_pred CchHHHHHHHhhc-CCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHc-CCCccceEeeccCCCCCCHH
Q 018998 63 HTNEILLGKAFKG-GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL-DVDCIDLYYQHRIDTQTPIE 136 (347)
Q Consensus 63 G~sE~~lG~aL~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L-g~d~iDl~~lH~p~~~~~~~ 136 (347)
|-+-+.++++|-+ .+|+++.|..-.. .+ +.-+-.||+|| |+-|+.=+.+-|-.+..+.+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY------------ER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P~d 692 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY------------ER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDPPD 692 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe------------hH---HHHHHHHHHHhhCCcccceEEEEeCCCCCChh
Confidence 3477889999976 5899887665432 23 33467899999 79999988888766654444
No 215
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.70 E-value=5.4e+02 Score=23.14 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeCcCCcCCC----ch--HHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHH
Q 018998 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPH----TN--EILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVR 106 (347)
Q Consensus 33 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G----~s--E~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (347)
.+|.+...+.++..++.|++-+=.....|-+ .. ++++..+.+.. .+++-|..-++.. +.+...
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~----------~~~~~i 82 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGAN----------STREAI 82 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCc----------cHHHHH
Confidence 3588999999999999999988655444432 22 34444454442 2445555554432 111111
Q ss_pred HHHHHHHHHcCCCccceEeeccCCCCC-CHHHHHHHHHHHHHc
Q 018998 107 AACEASLKRLDVDCIDLYYQHRIDTQT-PIEVTIGELKKLVEE 148 (347)
Q Consensus 107 ~~v~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~ 148 (347)
+. -+..+.+|. |.+++.-|.... +.+++.+.+.++.+.
T Consensus 83 ~~-a~~a~~~Ga---d~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 83 EL-ARHAEEAGA---DGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred HH-HHHHHHcCC---CEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 11 122344553 556666554433 345566666666654
No 216
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.59 E-value=5.6e+02 Score=24.37 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeec
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQH 127 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH 127 (347)
.-+.+.+++.++..+ .|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 346777877777554 5899999998876
No 217
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=23.55 E-value=6.1e+02 Score=23.69 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=50.0
Q ss_pred ceEeeccCCCCCCHHH-HHHHHHHHHHcCCcceEecCc----chHH-----HHHHHhcCCCeeEE-eeecccccc--chh
Q 018998 122 DLYYQHRIDTQTPIEV-TIGELKKLVEEGKIKYIGLSE----ASAS-----TIRRAHAVHPITAV-QLEWSLWTR--DVE 188 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~-~~~~L~~l~~~G~ir~iGvS~----~~~~-----~l~~~~~~~~~~~~-q~~~n~~~~--~~~ 188 (347)
.-+.+-.=++....+. ..+.++.+..-..++.+|+.+ ..+. .++.+.. ..+..+ ++.+|-..- ...
T Consensus 144 ~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~-~~~~~~~~~h~dh~~Ei~d~~ 222 (321)
T TIGR03821 144 NEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLAN-SRLQTVLVVHINHANEIDAEV 222 (321)
T ss_pred CEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHh-cCCcEEEEeeCCChHhCcHHH
Confidence 3344444344332222 456666777767777777753 3222 2333322 333333 445553211 112
Q ss_pred hchHHHHHHhCCeEEEcccCCCCc
Q 018998 189 EDIIPTCRELGIGIVAYSPLGRGF 212 (347)
Q Consensus 189 ~~l~~~~~~~gi~via~~pl~~G~ 212 (347)
.+.++.+++.|+.+...+++..|.
T Consensus 223 ~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 223 ADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHcCCEEEecceeeCCC
Confidence 467888999999999999998874
No 218
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.54 E-value=4.3e+02 Score=23.68 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHH--------------------hhcCCCCCeEEEeecCccccC
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKA--------------------FKGGFRERAELATKFGIGIVD 93 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~a--------------------L~~~~R~~~~i~tK~~~~~~~ 93 (347)
.+.++-.++.++|-+.||.||=|.-.-. +=..+-+. +++ ...-++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCC------
Confidence 4778899999999999999997764322 21222111 011 12224444432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCC-CCHH-HHHHHHHHHHHcCCcceEecCcchHH
Q 018998 94 GKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIE-VTIGELKKLVEEGKIKYIGLSEASAS 162 (347)
Q Consensus 94 ~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~-~~~~-~~~~~L~~l~~~G~ir~iGvS~~~~~ 162 (347)
.+-+.|+++++-..+.- .-|+.+||+.... .+.+ --+..+..|++.=- --||+|.|+..
T Consensus 123 ------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp --------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 24566766666653333 4589999987543 3333 34667777775422 57799988753
No 219
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=23.35 E-value=2.8e+02 Score=21.55 Aligned_cols=53 Identities=25% Similarity=0.398 Sum_probs=35.1
Q ss_pred hchHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 018998 189 EDIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAW 268 (347)
Q Consensus 189 ~~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~ 268 (347)
+..+++|++.|+. .+.|+. |-|. . +.+ .++.+++...|...|+|+.+.+..-
T Consensus 52 ~~yle~C~~~g~E--P~k~~S-Gkf~-----~----------Ri~----------p~lH~~a~~aAa~qgiSLN~~v~~~ 103 (111)
T COG4226 52 DDYLEFCKERGIE--PRKPYS-GKFN-----L----------RID----------PELHEAAALAAAAQGISLNTWVEEA 103 (111)
T ss_pred HHHHHHHHHcCCC--CccccC-ceee-----E----------ecC----------HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5799999999988 455666 3222 0 111 3344566777788899999887654
Q ss_pred H
Q 018998 269 V 269 (347)
Q Consensus 269 ~ 269 (347)
+
T Consensus 104 L 104 (111)
T COG4226 104 L 104 (111)
T ss_pred H
Confidence 3
No 220
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.31 E-value=3.5e+02 Score=23.64 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHC-----CCCeeeCcCCcCCCchHHHHHHHhhcC-CCCCeEEEeecC
Q 018998 35 PEPDMIALIRHAINS-----GITFLDTSDIYGPHTNEILLGKAFKGG-FRERAELATKFG 88 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~-----Gi~~~DtA~~Yg~G~sE~~lG~aL~~~-~R~~~~i~tK~~ 88 (347)
++++....++.|++. |+|---.+.... ++..+...++.. .|.-+||=++..
T Consensus 72 ~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~---~~~~m~~vl~~l~~~gl~FvDS~T~ 128 (213)
T PF04748_consen 72 SEEEIRKRLEAALARVPGAVGVNNHMGSRFTS---DREAMRWVLEVLKERGLFFVDSRTT 128 (213)
T ss_dssp -HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----HHHHHHHHHHHHHTT-EEEE-S--
T ss_pred CHHHHHHHHHHHHHHCCCcEEEecCCCccccC---CHHHHHHHHHHHHHcCCEEEeCCCC
Confidence 778899999999876 555443333333 666777666553 466677755543
No 221
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.14 E-value=6.4e+02 Score=23.78 Aligned_cols=103 Identities=21% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeec---------cCCCCCCHHHHHHHHHHHHHcCCcceEecCc---chHHHHH
Q 018998 98 YHGDPAYVRAACEASLKRLDVDCIDLYYQH---------RIDTQTPIEVTIGELKKLVEEGKIKYIGLSE---ASASTIR 165 (347)
Q Consensus 98 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH---------~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~ 165 (347)
..++.+.+.+ +-+.|.+.|+++|.+-+.- .+.. .+..+.++.+.+.. ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHH
Confidence 3456665544 5566999999999995321 1111 22233334433222 2344443322 2456777
Q ss_pred HHhcCCCeeEEeeeccccccchhhchHHHHHHhCCeEEEc
Q 018998 166 RAHAVHPITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 166 ~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~ 205 (347)
.+.+. .++.+.+.++.-....-...+++++++|+.+...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 76654 3456555544433333467899999999887764
No 222
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.95 E-value=1.1e+02 Score=24.07 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCcCCCchHHHHHHHhhcCC
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF 77 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~~~ 77 (347)
.+.+.-.+++...++.|.+.-+.|..||- ++..|..|.+.+.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y~ 54 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQYQ 54 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHHh
Confidence 46777888999999999999999999997 9999999998853
No 223
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=22.94 E-value=84 Score=19.24 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 018998 248 ECVNEIAANKGCTPSQLA 265 (347)
Q Consensus 248 ~~l~~ia~~~g~s~~qla 265 (347)
+.+..||++++++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 478899999999998876
No 224
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=22.89 E-value=5.2e+02 Score=22.59 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHCCCCeee
Q 018998 36 EPDMIALIRHAINSGITFLD 55 (347)
Q Consensus 36 ~~~~~~~l~~A~~~Gi~~~D 55 (347)
.|.....++.|++.|+..++
T Consensus 12 pENT~~af~~a~~~g~d~vE 31 (234)
T cd08570 12 PENTLLAFEKAVEAGADAIE 31 (234)
T ss_pred CccHHHHHHHHHHhCCCEEE
Confidence 47788899999999999875
No 225
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=22.54 E-value=1.5e+02 Score=25.55 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=45.7
Q ss_pred chHHHHHHhCCeEEE-cccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 018998 190 DIIPTCRELGIGIVA-YSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAANKGCTPSQLALAW 268 (347)
Q Consensus 190 ~l~~~~~~~gi~via-~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~ 268 (347)
+--+..+++||-++. +..-++|...+.-.-.+..++ +. .++++.....+.++.+.++++++++.+.|+..
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~-~~--------~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEA-RV--------LAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHH-HH--------HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445566788999887 666677776521110010000 00 11234456677778888999999999999887
Q ss_pred HHcC
Q 018998 269 VHHQ 272 (347)
Q Consensus 269 ~l~~ 272 (347)
++.+
T Consensus 194 a~~r 197 (200)
T cd01075 194 AEER 197 (200)
T ss_pred HHHH
Confidence 7653
No 226
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.35 E-value=2.4e+02 Score=27.03 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=15.3
Q ss_pred hhchHHHHHHhCCeEEEc
Q 018998 188 EEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 188 ~~~l~~~~~~~gi~via~ 205 (347)
-+.+++.|+++||.+|.-
T Consensus 60 L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHHhCCCCEEEe
Confidence 357999999999999885
No 227
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=22.34 E-value=1.5e+02 Score=23.81 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCccceEeeccCCCCC-CHHHHHHHHHHHHHcCCcceEec
Q 018998 106 RAACEASLKRLDVDCIDLYYQHRIDTQT-PIEVTIGELKKLVEEGKIKYIGL 156 (347)
Q Consensus 106 ~~~v~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ir~iGv 156 (347)
+..+++.|+.+....+|.++++..+... ...+....++.|.++-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4456777777777889999999887765 34567777888877733444433
No 228
>PLN02389 biotin synthase
Probab=22.22 E-value=7.1e+02 Score=23.96 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcCCc-CC-C--chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHH
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSDIY-GP-H--TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~-G--~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v 109 (347)
.+.++..+.++.+.+.|++.|-....+ +. + ..-..+-+.++......+.|....|. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~----------l~~E~l---- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM----------LEKEQA---- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC----------CCHHHH----
Confidence 478889999999999999988532221 11 1 11234445555432223445433332 233333
Q ss_pred HHHHHHcCCCccceEee------ccCCCCCCHHHHHHHHHHHHHcCC
Q 018998 110 EASLKRLDVDCIDLYYQ------HRIDTQTPIEVTIGELKKLVEEGK 150 (347)
Q Consensus 110 ~~sL~~Lg~d~iDl~~l------H~p~~~~~~~~~~~~L~~l~~~G~ 150 (347)
+.|+..|+|++-+-+= +..-.....++.++.++.+++.|.
T Consensus 182 -~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 -AQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred -HHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 3355567776543221 001112456788899999999885
No 229
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=22.10 E-value=2e+02 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=14.3
Q ss_pred HHHHHHHCCCCeeeCcCCc
Q 018998 42 LIRHAINSGITFLDTSDIY 60 (347)
Q Consensus 42 ~l~~A~~~Gi~~~DtA~~Y 60 (347)
-+...|+.|||+||-=-+|
T Consensus 42 ~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CHHHHHhcCceEEEEEeee
Confidence 4667899999999955444
No 230
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.06 E-value=7.2e+02 Score=23.94 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=38.9
Q ss_pred Ccceecccccccc----CCCC-CCHHHHHHHHHHHHHCCCCeeeCcC----CcCCCchH-----HHHHHHhhc
Q 018998 17 SAQGLGCMGMSAL----YGPP-KPEPDMIALIRHAINSGITFLDTSD----IYGPHTNE-----ILLGKAFKG 75 (347)
Q Consensus 17 s~l~lG~~~~g~~----~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA~----~Yg~G~sE-----~~lG~aL~~ 75 (347)
.+++||.|.+|+. ||.. .+.....+.++.+-+.|+..+...+ -|+....| +.+.++|++
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~ 79 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDE 79 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 3678999988743 4443 2344677889999999999998652 24442222 357777765
No 231
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.02 E-value=4.2e+02 Score=22.93 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 018998 103 AYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS 157 (347)
Q Consensus 103 ~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS 157 (347)
..+.+.+++.++.+|.+. .++ .+...+.+...+.++.+.++| +..|=++
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~ 62 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVS 62 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEec
Confidence 457788888888888532 332 334444577778888888776 5555443
No 232
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.92 E-value=6e+02 Score=22.98 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCcchHHHHHHHhcCCCeeEEe
Q 018998 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (347)
.++.+...+ +-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.+......+.++.+.+.. ++.+-
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCEEE
Confidence 455554444 55569999999988863 4332 334455555554443 333555566777888877753 23333
Q ss_pred eeccc--------cccchh------hchHHHHHHhCCeEEEcc
Q 018998 178 LEWSL--------WTRDVE------EDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 178 ~~~n~--------~~~~~~------~~l~~~~~~~gi~via~~ 206 (347)
+.+.. +.+..+ .+.+.+++++|+.+...-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 32221 111111 357788899998766543
No 233
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.85 E-value=5.8e+02 Score=24.26 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeec-cCCC----------C--CCHH---HH-HHHHHHHHHcCCcceEecCcch
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQH-RIDT----------Q--TPIE---VT-IGELKKLVEEGKIKYIGLSEAS 160 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH-~p~~----------~--~~~~---~~-~~~L~~l~~~G~ir~iGvS~~~ 160 (347)
-+.+.+++.++.. .+|+.+++.++.+. .|+. . .+.+ +. -.+++.|.+.|- ..+++++|.
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 4677787777664 66899999888654 2210 0 0111 12 245667777775 467888875
No 234
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=21.75 E-value=92 Score=27.92 Aligned_cols=50 Identities=8% Similarity=0.158 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHH---HHcCCCCeeeccCCCcHHHHHHHHh
Q 018998 243 NQKLFECVNEIAANKGCTPSQLALAW---VHHQGDDVCPIPGTTKIANLNENIE 293 (347)
Q Consensus 243 ~~~~~~~l~~ia~~~g~s~~qlal~~---~l~~~~v~~~i~g~~~~~~l~~nl~ 293 (347)
-.+.+.++..||+.|++++.+++..| .+++..- ..-+...+.+.+++.+.
T Consensus 8 ~~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~lq 60 (253)
T PF08418_consen 8 DPDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYLQ 60 (253)
T ss_dssp -HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTTS
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHHH
Confidence 36778899999999999999999876 4555432 22355556655555554
No 235
>PTZ00081 enolase; Provisional
Probab=21.73 E-value=6.7e+02 Score=24.71 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcC--CcceEec--CcchHHHHHHHhcCCCeeE
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEG--KIKYIGL--SEASASTIRRAHAVHPITA 175 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 175 (347)
.+++.+.+-+.+.++.+ +++++-.|-. ++.|+.+.+|.++- .+.-+|= +..++..+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~----~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFD----QDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCC----cccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 46666655555666554 4666776654 34466677776653 5544443 2356889999999888899
Q ss_pred Eeeeccccc-cchhhchHHHHHHhCCeEEE
Q 018998 176 VQLEWSLWT-RDVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 176 ~q~~~n~~~-~~~~~~l~~~~~~~gi~via 204 (347)
+|+..|-.- -....++...|+.+|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 998887543 12235799999999999776
No 236
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.68 E-value=4.7e+02 Score=21.84 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=52.6
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCC--CeeEEeeeccccccc-----hhhchHHHHHH
Q 018998 125 YQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH--PITAVQLEWSLWTRD-----VEEDIIPTCRE 197 (347)
Q Consensus 125 ~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~-----~~~~l~~~~~~ 197 (347)
++..|... ..+++++.--+=-++.-|++|-|.+.+-.....+.+.. .+.++-+.|+....+ .+.++-+..++
T Consensus 3 yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 3 YFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred cccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 44455443 34566666666667778899888765544444443332 244555555554432 44678899999
Q ss_pred hCCeEEEcccCCCC
Q 018998 198 LGIGIVAYSPLGRG 211 (347)
Q Consensus 198 ~gi~via~~pl~~G 211 (347)
+|..+..-+-...|
T Consensus 82 rGa~v~~~sHalSg 95 (186)
T COG1751 82 RGAKVLTQSHALSG 95 (186)
T ss_pred cCceeeeehhhhhc
Confidence 99999886655444
No 237
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.62 E-value=63 Score=24.50 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCeeeccCCCcHHHHHHHHhhcC-------CCCCHHHHHHHHHHhc
Q 018998 243 NQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS-------VKITPEEMAELEAIAS 312 (347)
Q Consensus 243 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~~i~g~~~~~~l~~nl~a~~-------~~Lt~e~~~~i~~l~~ 312 (347)
.....+++..+|+..|..+..-...- +.+| -....+|.-+.+.|.+.++..+ -+||+-+.+.|++.+.
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~-~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQK-RRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEec-CCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 34566788899988887654322111 1222 2467789999999999887553 4799999999999984
No 238
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.61 E-value=6.3e+02 Score=24.31 Aligned_cols=88 Identities=9% Similarity=0.127 Sum_probs=56.1
Q ss_pred eEeeccCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--cchHHH---HHHHhcCC---CeeEEeee
Q 018998 123 LYYQHRIDTQ-----------TPIEVTIGELKKLVE-EGK---IKYIGLS--EASAST---IRRAHAVH---PITAVQLE 179 (347)
Q Consensus 123 l~~lH~p~~~-----------~~~~~~~~~L~~l~~-~G~---ir~iGvS--~~~~~~---l~~~~~~~---~~~~~q~~ 179 (347)
.+-||.+++. .+++++++++.++.+ .|+ |+++=+. |.+.++ +.+++... ...++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4678988653 346888998887764 354 3444333 334443 44554444 56788999
Q ss_pred ccccccc----hh----hchHHHHHHhCCeEEEcccCCC
Q 018998 180 WSLWTRD----VE----EDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 180 ~n~~~~~----~~----~~l~~~~~~~gi~via~~pl~~ 210 (347)
||++... +. ....+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9986431 11 3567777889999998776653
No 239
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=21.55 E-value=7.4e+02 Score=23.91 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=52.7
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC-CCeeEEeeeccccccc-hhhchHHHHHHhC
Q 018998 122 DLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAVQLEWSLWTRD-VEEDIIPTCRELG 199 (347)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g 199 (347)
|-+.+..|.. ...+..++.+.+.+.++.+-+...+.+.+++.+.. ..+.++..+.|+.-+- .-+.+.+.|+++|
T Consensus 100 D~Vvv~~p~Y----~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDAY----GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCCc----hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 5555554443 33444555555555566666655577888777643 3445555566664432 2367999999999
Q ss_pred CeEEEcccCCCC
Q 018998 200 IGIVAYSPLGRG 211 (347)
Q Consensus 200 i~via~~pl~~G 211 (347)
+-++.=...+.+
T Consensus 176 i~vIvD~a~a~~ 187 (405)
T PRK08776 176 ALTVVDNTFLSP 187 (405)
T ss_pred CEEEEECCCccc
Confidence 999876665544
No 240
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.54 E-value=2.5e+02 Score=25.18 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHH-HHHHHcCCcceEecCc-ch-------HHHHHHHhcCCCeeEE
Q 018998 106 RAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGEL-KKLVEEGKIKYIGLSE-AS-------ASTIRRAHAVHPITAV 176 (347)
Q Consensus 106 ~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L-~~l~~~G~ir~iGvS~-~~-------~~~l~~~~~~~~~~~~ 176 (347)
.+.++..|+..| +|||++=+-|-......++.++.. +-+++-|.--+.| .+ +. .+++.+.+..-.|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 456788899999 999999998876655555555444 4344555555666 21 11 1122222333456776
Q ss_pred eeeccccccchh--hchHHHHHHhCCeEEE
Q 018998 177 QLEWSLWTRDVE--EDIIPTCRELGIGIVA 204 (347)
Q Consensus 177 q~~~n~~~~~~~--~~l~~~~~~~gi~via 204 (347)
.+.-..+.-..+ ..+++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 655444332212 3688888888887764
No 241
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.49 E-value=78 Score=28.50 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHH-HHcCCcceEecCcc-------hHHHHHHHhcCCCeeEEe
Q 018998 106 RAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKL-VEEGKIKYIGLSEA-------SASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 106 ~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l-~~~G~ir~iGvS~~-------~~~~l~~~~~~~~~~~~q 177 (347)
.+.++..|+..| +|||++-+-|-......++.++..-++ ++-|.--+.|=.-+ ..+++.+.+....|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 456788899999 999999998776554444444333333 33333333332211 123333333345566665
Q ss_pred eeccccccc--hhhchHHHHHHhCCeEEE
Q 018998 178 LEWSLWTRD--VEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 178 ~~~n~~~~~--~~~~l~~~~~~~gi~via 204 (347)
+.-..+... ....++..++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 544433322 123677777777777665
No 242
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=21.46 E-value=1.2e+03 Score=26.35 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=55.3
Q ss_pred HcCCCccceEeeccCCCCCCHHHHHHHHHHHHH-cCCc--ceEecCcchHHHHHHHhcCCCeeEEeeeccccc--cchhh
Q 018998 115 RLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVE-EGKI--KYIGLSEASASTIRRAHAVHPITAVQLEWSLWT--RDVEE 189 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~-~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~--~~~~~ 189 (347)
.-|.+.||+=.= ....+-++.+..+..+.+ +-.+ --|-|.++.++.++.+++..+=..+.+..|... ... .
T Consensus 379 e~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~-~ 454 (1178)
T TIGR02082 379 ENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERF-I 454 (1178)
T ss_pred HCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccH-H
Confidence 558899999642 111233444444433333 3223 236777888999999988732233334555532 122 3
Q ss_pred chHHHHHHhCCeEEEcccCCCC
Q 018998 190 DIIPTCRELGIGIVAYSPLGRG 211 (347)
Q Consensus 190 ~l~~~~~~~gi~via~~pl~~G 211 (347)
.+++.+++.|..+|.+.--..|
T Consensus 455 ~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 455 ETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred HHHHHHHHhCCCEEEEecCCCC
Confidence 7999999999999997633334
No 243
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.39 E-value=5.3e+02 Score=23.74 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHH-----HHHHHHHHcCCcceEecCcchHH-------HHHHHhcCCCeeEEeeec
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTI-----GELKKLVEEGKIKYIGLSEASAS-------TIRRAHAVHPITAVQLEW 180 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~-----~~L~~l~~~G~ir~iGvS~~~~~-------~l~~~~~~~~~~~~q~~~ 180 (347)
++-++-.++|+..+..+.......+.. +.+.++..+--=|++|+.+.++. ++++......+.-+|++-
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 788888899999888522222222222 46777777777789998876443 455555555555555522
Q ss_pred cccc---cch-hhchHHHHHHhCCeEEEcccC
Q 018998 181 SLWT---RDV-EEDIIPTCRELGIGIVAYSPL 208 (347)
Q Consensus 181 n~~~---~~~-~~~l~~~~~~~gi~via~~pl 208 (347)
-... ... -..+++.|.++|+.++-+.-.
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 2111 111 146999999999999985443
No 244
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=21.36 E-value=3.3e+02 Score=24.05 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcC-CCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL 113 (347)
++++..++.+.+.++|..|+=|+..|+ .|.+.+.+....+.. +.+ +.-|.... -.+.+...+-++.--
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~--~~IKasGG--------Irt~~~a~~~i~aGA 202 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPR--VGVKASGG--------IRTLEDALAMIEAGA 202 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCC--ceEEeeCC--------cCCHHHHHHHHHcCc
Confidence 678889999999999999999999885 355555554444332 222 23333211 124566666666655
Q ss_pred HHcCCCc
Q 018998 114 KRLDVDC 120 (347)
Q Consensus 114 ~~Lg~d~ 120 (347)
.++|+.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 6666543
No 245
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=21.18 E-value=1.2e+03 Score=26.39 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=69.0
Q ss_pred HcCCCccceEeeccCCCC-CCHHHHHHHHHHHHHcC-Cc--ceEecCcchHHHHHHHhcCCCeeEEeeeccccccc-hhh
Q 018998 115 RLDVDCIDLYYQHRIDTQ-TPIEVTIGELKKLVEEG-KI--KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRD-VEE 189 (347)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~G-~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 189 (347)
.-|.+.||+= ++.. .+.++.+..+..+++.- .+ --|-|.++.++.++.+++..+=..+.+..|..... .-.
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~ 470 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFI 470 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHH
Confidence 4488999994 4432 23344454444444321 11 23667778899999998873323333455554321 013
Q ss_pred chHHHHHHhCCeEEEcccCCCCcCCCCCCCCCCCCCccccccCCCCCCCchhhhHHHHHHHHHHHH-HhCCCH
Q 018998 190 DIIPTCRELGIGIVAYSPLGRGFFSSGSKLAESLSEGDYRKHLPRFQPGNLEHNQKLFECVNEIAA-NKGCTP 261 (347)
Q Consensus 190 ~l~~~~~~~gi~via~~pl~~G~l~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~-~~g~s~ 261 (347)
.+++.|++.|..+|++.--..|.- ...++-.+..+++.+++. ++|+.+
T Consensus 471 ~~~~l~~kyga~vV~m~~de~G~~------------------------~t~e~r~~ia~r~~~~~~~~~Gi~~ 519 (1229)
T PRK09490 471 EHARLVRRYGAAVVVMAFDEQGQA------------------------DTRERKIEICKRAYDILTEEVGFPP 519 (1229)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCC------------------------CCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 689999999999999764333421 113445556666777665 488743
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=21.04 E-value=1e+03 Score=25.29 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=79.6
Q ss_pred CCHHHHHHHHH-------HHHHCCCCeeeCcC-------------------CcCCCchH---HH---HHHHhhcCCCCCe
Q 018998 34 KPEPDMIALIR-------HAINSGITFLDTSD-------------------IYGPHTNE---IL---LGKAFKGGFRERA 81 (347)
Q Consensus 34 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~-------------------~Yg~G~sE---~~---lG~aL~~~~R~~~ 81 (347)
.+.+++.++++ .|.++|+..+|.-. .||. .-| ++ +=+++++.-.+++
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCCC
Confidence 35555555554 45678999998632 3442 222 11 1222233234567
Q ss_pred EEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCC----CH--HHHHHHHHHHHHcCCcceEe
Q 018998 82 ELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT----PI--EVTIGELKKLVEEGKIKYIG 155 (347)
Q Consensus 82 ~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~----~~--~~~~~~L~~l~~~G~ir~iG 155 (347)
.|..|+...... ....+.+... .+-+-|+..|+|+||+ |...... .. .-.....+++++.=+|--++
T Consensus 620 ~v~~ri~~~~~~---~~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 620 PMSVRISAHDWV---EGGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred eeEEEEcccccc---CCCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 888998753110 1123444433 3445567778766665 4221100 00 00112234455544566666
Q ss_pred cCcc-hHHHHHHHhcCCCeeEEeee-ccccccchhhchHHHHHHhCCe
Q 018998 156 LSEA-SASTIRRAHAVHPITAVQLE-WSLWTRDVEEDIIPTCRELGIG 201 (347)
Q Consensus 156 vS~~-~~~~l~~~~~~~~~~~~q~~-~n~~~~~~~~~l~~~~~~~gi~ 201 (347)
+.+. +++..+++++....|.+.+- --+.+. +=+...+.+.|+.
T Consensus 693 ~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP---~~~~~~~~~~~~~ 737 (765)
T PRK08255 693 VGAISEADHVNSIIAAGRADLCALARPHLADP---AWTLHEAAEIGYR 737 (765)
T ss_pred eCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc---cHHHHHHHHcCCC
Confidence 6664 77788888887777776542 222222 1244556666665
No 247
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.93 E-value=2.4e+02 Score=27.89 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcC-CCeeEE
Q 018998 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAV 176 (347)
Q Consensus 112 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 176 (347)
.-.||.+.|+|.. ..+++|++...++..++|+-.+||+-..-++.+.++.+. ..+|++
T Consensus 203 I~~Rl~t~y~d~~-------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 203 IDKRLRTGYLDEI-------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHHhcchhhhh-------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 3457788999863 356899999999999999999999999888888888776 345554
No 248
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=20.86 E-value=2.2e+02 Score=24.35 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=40.9
Q ss_pred HHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-cchHHHHHHHhcCCCeeEEeeecc
Q 018998 113 LKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 181 (347)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 181 (347)
...+|.|++-+.+-.......+ .+....|.++... .+..+||- |.+.+.+.++.....++.+|++-+
T Consensus 15 a~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 15 AAEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3467877766654332222222 3344444444433 36677874 678888888888788899998654
No 249
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=20.84 E-value=66 Score=26.08 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=12.5
Q ss_pred HHHHHHHCCCCeeeCcCC
Q 018998 42 LIRHAINSGITFLDTSDI 59 (347)
Q Consensus 42 ~l~~A~~~Gi~~~DtA~~ 59 (347)
-+...++.|||+||-=-.
T Consensus 31 ~i~~QL~~GiR~lDlrv~ 48 (146)
T PF00388_consen 31 SIREQLESGIRYLDLRVW 48 (146)
T ss_dssp HHHHHHHTT--EEEEEEE
T ss_pred hHHHHHhccCceEEEEEE
Confidence 578899999999995433
No 250
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=20.78 E-value=7.3e+02 Score=23.58 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeCcC
Q 018998 34 KPEPDMIALIRHAINSGITFLDTSD 58 (347)
Q Consensus 34 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 58 (347)
.+.++..++++.--+.||..++...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3678899999999999999999764
No 251
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.73 E-value=6.6e+02 Score=23.53 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcC----------CcCCC--chHHHHHHHhhcC---CCCCeEEEeecCccccCCCCCCC
Q 018998 35 PEPDMIALIRHAINSGITFLDTSD----------IYGPH--TNEILLGKAFKGG---FRERAELATKFGIGIVDGKYGYH 99 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~----------~Yg~G--~sE~~lG~aL~~~---~R~~~~i~tK~~~~~~~~~~~~~ 99 (347)
+.+...+..+.+-+.|+..||--- .+|.. .+...+.+.++.. -. ++-|+.|+...+.+.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~----- 150 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDD----- 150 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcc-----
Confidence 567888888889999999999543 22211 2456666666542 12 678999987654321
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCC--HHHHHHHHHHHHHcCC-cceEecCc-chHHHHHHHhcCCCeeE
Q 018998 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP--IEVTIGELKKLVEEGK-IKYIGLSE-ASASTIRRAHAVHPITA 175 (347)
Q Consensus 100 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~--~~~~~~~L~~l~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~ 175 (347)
+.....+.+.++.-| +|.+.+|.-..... -..-|+.+.++++.=. |--||=.+ ++++...+.++....|.
T Consensus 151 ---~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~Dg 224 (323)
T COG0042 151 ---DILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADG 224 (323)
T ss_pred ---cccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCE
Confidence 123334555666666 48889997643221 1145788888887655 55555444 57888888887776777
Q ss_pred Eee
Q 018998 176 VQL 178 (347)
Q Consensus 176 ~q~ 178 (347)
+++
T Consensus 225 VMi 227 (323)
T COG0042 225 VMI 227 (323)
T ss_pred EEE
Confidence 765
No 252
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=20.68 E-value=2.1e+02 Score=22.36 Aligned_cols=51 Identities=29% Similarity=0.225 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 018998 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK 152 (347)
Q Consensus 102 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir 152 (347)
...+...+.+.++.-....+-=-.+-.|+.....++..+.|.+|+++||+.
T Consensus 55 ~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 55 RSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred cccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 344566667776666555442123445666666789999999999999985
No 253
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.61 E-value=4.7e+02 Score=23.25 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCC-ccce-----------------EeeccC--------CCCCCH---HHHHHHHHHHHHcC
Q 018998 99 HGDPAYVRAACEASLKRLDVD-CIDL-----------------YYQHRI--------DTQTPI---EVTIGELKKLVEEG 149 (347)
Q Consensus 99 ~~~~~~i~~~v~~sL~~Lg~d-~iDl-----------------~~lH~p--------~~~~~~---~~~~~~L~~l~~~G 149 (347)
+.+...+++.+++.-++|+.+ |+|= -++|.| ....++ ...-+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 455667778888887777752 3331 135555 333332 35678888899998
Q ss_pred CcceEecCcchHHHHHHHhcC
Q 018998 150 KIKYIGLSEASASTIRRAHAV 170 (347)
Q Consensus 150 ~ir~iGvS~~~~~~l~~~~~~ 170 (347)
+ .+=+|+|..++++++++.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 7 788999999999888764
No 254
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.61 E-value=3.6e+02 Score=23.29 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=51.0
Q ss_pred CccceEeeccCCCCCCHHHHHHHHHHHHHcCCcceEecCcchHHHHHHHhcCCCeeEEeeecc-ccccchhhchHHHHHH
Q 018998 119 DCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWS-LWTRDVEEDIIPTCRE 197 (347)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~l~~~~~~ 197 (347)
.-..+..+.+.. .-....+|.+.|- ..+-++-.+.+.|.++.+.....++-+... .........+++.|++
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 335677776655 2233455666666 455666567888888887555433333322 1112233689999999
Q ss_pred hCCeEEEcccCCCC
Q 018998 198 LGIGIVAYSPLGRG 211 (347)
Q Consensus 198 ~gi~via~~pl~~G 211 (347)
.||..+.++.+...
T Consensus 93 agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 93 AGVKHFVPSSFGAD 106 (233)
T ss_dssp HT-SEEEESEESSG
T ss_pred cccceEEEEEeccc
Confidence 99999999888764
No 255
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.57 E-value=7.2e+02 Score=23.39 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHCCCCeeeCcCCcCC-----C---chHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHH
Q 018998 35 PEPDMIALIRHAINSGITFLDTSDIYGP-----H---TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVR 106 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----G---~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (347)
+.++..+.+..+.+.|++.|=.--.... + ..+...=+++++.-.+++.|..=... .++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~---------~~~~~~-- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG---------RVSKPM-- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC---------CCCHHH--
Confidence 3455666677777889988754221100 0 01122223344322233333332221 234333
Q ss_pred HHHHHHHHHcCCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcchHHHHHHHhcCCCeeEEeeeccccc-
Q 018998 107 AACEASLKRLDVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWT- 184 (347)
Q Consensus 107 ~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~- 184 (347)
..+.++.|. .+++.++-.|-... .++.+.+|++..-+. +.|=|.++...+..++....++++|......-
T Consensus 192 --A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GG 263 (352)
T cd03325 192 --AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGG 263 (352)
T ss_pred --HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCC
Confidence 223333443 23555666665422 477788888876554 55666788899999888778899998765432
Q ss_pred cchhhchHHHHHHhCCeEEEcc
Q 018998 185 RDVEEDIIPTCRELGIGIVAYS 206 (347)
Q Consensus 185 ~~~~~~l~~~~~~~gi~via~~ 206 (347)
-..-..+.+.|+++|+.++.++
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 1123589999999999988655
No 256
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.53 E-value=7.2e+02 Score=23.66 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=54.7
Q ss_pred eEeeccCCCC-----------CCHHHHHHHHHHHHHcC--Ccc--eEecC--cchHHH---HHHHhcCCCeeEEeeeccc
Q 018998 123 LYYQHRIDTQ-----------TPIEVTIGELKKLVEEG--KIK--YIGLS--EASAST---IRRAHAVHPITAVQLEWSL 182 (347)
Q Consensus 123 l~~lH~p~~~-----------~~~~~~~~~L~~l~~~G--~ir--~iGvS--~~~~~~---l~~~~~~~~~~~~q~~~n~ 182 (347)
.+-||.|+.. -++++++++++++.++. +|. ++=+. |.+.++ |.+++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5788988542 35688889988876542 322 23222 445544 4455555567888899997
Q ss_pred ccc----chh----hchHHHHHHhCCeEEEcccCCC
Q 018998 183 WTR----DVE----EDIIPTCRELGIGIVAYSPLGR 210 (347)
Q Consensus 183 ~~~----~~~----~~l~~~~~~~gi~via~~pl~~ 210 (347)
... .+. +...+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 532 111 3456667788999888766653
No 257
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.50 E-value=8.3e+02 Score=24.47 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=57.1
Q ss_pred hHHHHHHHhhc----CCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeccCCCCCCHH-HHH
Q 018998 65 NEILLGKAFKG----GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE-VTI 139 (347)
Q Consensus 65 sE~~lG~aL~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p~~~~~~~-~~~ 139 (347)
+++.|-+++++ .+.+-++|.+-+.. +-|-..++...+.++.+.++++.++.|+...... ..-
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~s-------------elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~ 135 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCTS-------------SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAAD 135 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCChH-------------HHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHH
Confidence 56666666654 34455666666532 2333334444455554468999999998765432 222
Q ss_pred HHHHHHH--------------HcCCcceEecCcc------hHHHHHHHhcCCCeeEEe
Q 018998 140 GELKKLV--------------EEGKIKYIGLSEA------SASTIRRAHAVHPITAVQ 177 (347)
Q Consensus 140 ~~L~~l~--------------~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q 177 (347)
.+|+.++ +++.|--||.++. +..+++++++...+.++.
T Consensus 136 ~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 136 RTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3333332 2345777888752 556777777765555543
No 258
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=20.44 E-value=2.3e+02 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=26.7
Q ss_pred eeEEeeeccccccchhhchHHHHHHhCCeEEEc
Q 018998 173 ITAVQLEWSLWTRDVEEDIIPTCRELGIGIVAY 205 (347)
Q Consensus 173 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~via~ 205 (347)
+..+==+||+++.....++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 344444799999888889999999999999864
No 259
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=20.38 E-value=7.3e+02 Score=23.37 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=21.5
Q ss_pred CCHHHHHHHHH-------HHHHCCCCeeeCcCCcCCCchHHHHHHHhhc
Q 018998 34 KPEPDMIALIR-------HAINSGITFLDTSDIYGPHTNEILLGKAFKG 75 (347)
Q Consensus 34 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~~Yg~G~sE~~lG~aL~~ 75 (347)
.+.++..++++ .|.++|+..++.-...| -++.++|..
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahG-----yLl~qFlSp 185 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANG-----YLIDQFLRD 185 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-----hhHHHhcCC
Confidence 35555555554 45678999998643333 145555543
No 260
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=20.29 E-value=3.3e+02 Score=26.38 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcC-CcceEecCcc---hHHHHHHHhcC-CCeeEEeeeccc-cccchhhchHHHHHHhCCeEEE
Q 018998 138 TIGELKKLVEEG-KIKYIGLSEA---SASTIRRAHAV-HPITAVQLEWSL-WTRDVEEDIIPTCRELGIGIVA 204 (347)
Q Consensus 138 ~~~~L~~l~~~G-~ir~iGvS~~---~~~~l~~~~~~-~~~~~~q~~~n~-~~~~~~~~l~~~~~~~gi~via 204 (347)
+++.++.|..+| .|.++.|... +++++++++.. ..+.++|.--|- ..-++-.++-+.|+++|+-+..
T Consensus 104 Vl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 104 VLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 445555554445 4555555442 44555555432 122333222111 1111234555566666555443
No 261
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.24 E-value=7.5e+02 Score=24.36 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC--CCCeee-CcCCcCCCchHHHHHHHhhcCCCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHH
Q 018998 35 PEPDMIALIRHAINS--GITFLD-TSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (347)
Q Consensus 35 ~~~~~~~~l~~A~~~--Gi~~~D-tA~~Yg~G~sE~~lG~aL~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~ 111 (347)
+.+...+-++...+. |++.|- ..+.+.. +.+.+-+.++...+..+....-..... +++.++.--+.
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~~i~~~~~~~~~~---------~~e~l~~l~~a 296 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTD--DKPRAEEIARKLGPLGVTWSCNARANV---------DYETLKVMKEN 296 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC--CHHHHHHHHHHHhhcCceEEEEecCCC---------CHHHHHHHHHc
Q ss_pred HHHHc--CCCccceEeeccCCCCCCHHHHHHHHHHHHHcCCcce----EecCcchHHHHHHHhcC-CCeeEEeeeccccc
Q 018998 112 SLKRL--DVDCIDLYYQHRIDTQTPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV-HPITAVQLEWSLWT 184 (347)
Q Consensus 112 sL~~L--g~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~ 184 (347)
-+..+ |++..|==.|+........++..++++.+++.|.--. +|+-..+.+.+++.++. .......+.++++.
T Consensus 297 G~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~ 376 (472)
T TIGR03471 297 GLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAA 376 (472)
T ss_pred CCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecc
Q ss_pred cchhhchHHHHHHhCC
Q 018998 185 RDVEEDIIPTCRELGI 200 (347)
Q Consensus 185 ~~~~~~l~~~~~~~gi 200 (347)
..+...+.+.++++|.
T Consensus 377 P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 377 PYPGTELYDQAKQNGW 392 (472)
T ss_pred cCCCcHHHHHHHHCCC
No 262
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.15 E-value=1.3e+02 Score=19.11 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 018998 249 CVNEIAANKGCTPSQLALAWVH 270 (347)
Q Consensus 249 ~l~~ia~~~g~s~~qlal~~~l 270 (347)
.+.++|+++|+|..++ .+|+-
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~ 34 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIK 34 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHH
Confidence 4677888888888777 56654
No 263
>PF14502 HTH_41: Helix-turn-helix domain
Probab=20.11 E-value=96 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCH--HHHHHHHHHcCCCCe
Q 018998 249 CVNEIAANKGCTP--SQLALAWVHHQGDDV 276 (347)
Q Consensus 249 ~l~~ia~~~g~s~--~qlal~~~l~~~~v~ 276 (347)
.+.+++++++++. .|-||+++-..+.|.
T Consensus 8 tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 8 TISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 6889999998876 699999999887643
No 264
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=20.07 E-value=4.6e+02 Score=20.98 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=42.5
Q ss_pred CCCCeEEEeecCccccCCCCCCCCCHHHHHHHHHHHHHHcCC----CccceEeeccCCCC-CCHHHHHHHHHHHHH
Q 018998 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV----DCIDLYYQHRIDTQ-TPIEVTIGELKKLVE 147 (347)
Q Consensus 77 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~----d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~ 147 (347)
.|=-+.|+-|++. ...+..|++.+.++.+.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~---------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3445667777653 34678889999998887753 45799999988754 355566666665554
No 265
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=20.05 E-value=1.5e+02 Score=20.86 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Q 018998 244 QKLFECVNEIAANKGCTPSQLALAWVHHQ 272 (347)
Q Consensus 244 ~~~~~~l~~ia~~~g~s~~qlal~~~l~~ 272 (347)
...++.|.+||+..|+++++++-..-..+
T Consensus 20 ~~FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 20 PAFWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 45678999999999999999987664444
Done!