Query 019000
Match_columns 347
No_of_seqs 223 out of 1505
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 9.2E-71 2E-75 510.6 32.9 306 9-318 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 3E-69 6.4E-74 490.8 32.1 316 7-327 10-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 2.4E-63 5.1E-68 464.2 32.1 298 11-315 1-316 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 9.3E-63 2E-67 464.9 33.8 312 1-318 4-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 9.5E-63 2E-67 465.5 33.2 304 9-317 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 3.1E-63 6.8E-68 443.5 27.4 259 9-321 3-268 (280)
7 PLN02587 L-galactose dehydroge 100.0 2.3E-60 5E-65 443.6 30.9 287 11-318 1-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-58 2.9E-63 426.5 32.0 281 11-315 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 3.1E-58 6.7E-63 424.4 30.3 273 12-318 10-289 (290)
10 KOG1577 Aldo/keto reductase fa 100.0 3E-58 6.5E-63 411.3 25.4 260 11-321 6-289 (300)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.6E-57 5.5E-62 413.5 28.9 247 19-319 1-254 (267)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.6E-57 3.4E-62 419.0 26.3 276 23-316 1-282 (283)
13 PRK14863 bifunctional regulato 100.0 2.5E-56 5.4E-61 411.1 25.1 270 18-316 2-281 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 7.8E-55 1.7E-59 398.5 28.6 255 11-320 6-265 (275)
15 COG4989 Predicted oxidoreducta 100.0 8.2E-54 1.8E-58 367.0 23.6 285 9-318 1-294 (298)
16 COG1453 Predicted oxidoreducta 100.0 2.1E-51 4.5E-56 370.8 24.5 272 9-317 1-285 (391)
17 KOG1576 Predicted oxidoreducta 100.0 8.2E-51 1.8E-55 350.9 23.4 283 7-306 20-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 2E-05 4.3E-10 68.5 6.6 71 141-212 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.0 2.6 5.5E-05 39.3 15.1 154 40-217 134-291 (316)
20 PRK10550 tRNA-dihydrouridine s 87.5 21 0.00045 33.4 13.8 133 40-185 73-224 (312)
21 cd03316 MR_like Mandelate race 87.2 26 0.00057 33.1 14.8 152 40-212 139-298 (357)
22 cd03315 MLE_like Muconate lact 86.1 25 0.00055 31.7 15.5 155 40-217 85-243 (265)
23 PRK07945 hypothetical protein; 86.1 16 0.00034 34.5 12.3 153 42-209 111-288 (335)
24 PRK08392 hypothetical protein; 82.7 25 0.00055 30.7 11.5 153 43-210 15-179 (215)
25 cd03174 DRE_TIM_metallolyase D 82.5 10 0.00023 34.0 9.3 106 105-212 15-135 (265)
26 PF05913 DUF871: Bacterial pro 80.2 3.9 8.4E-05 38.9 5.7 211 40-299 12-235 (357)
27 COG1748 LYS9 Saccharopine dehy 79.9 10 0.00022 36.5 8.5 81 42-138 79-159 (389)
28 PRK13958 N-(5'-phosphoribosyl) 79.9 5.6 0.00012 34.7 6.3 74 107-187 10-84 (207)
29 cd00739 DHPS DHPS subgroup of 79.5 30 0.00065 31.3 11.1 101 106-212 21-127 (257)
30 PRK08609 hypothetical protein; 79.3 23 0.0005 36.0 11.3 149 44-209 351-522 (570)
31 cd00308 enolase_like Enolase-s 79.0 13 0.00028 32.8 8.5 87 127-217 120-208 (229)
32 cd00423 Pterin_binding Pterin 77.9 43 0.00093 30.2 11.6 102 106-213 21-128 (258)
33 TIGR01928 menC_lowGC/arch o-su 77.2 64 0.0014 30.1 14.9 153 40-217 132-286 (324)
34 PRK07535 methyltetrahydrofolat 77.2 57 0.0012 29.6 12.3 136 107-270 23-158 (261)
35 TIGR02370 pyl_corrinoid methyl 76.9 38 0.00083 29.2 10.6 145 40-206 10-164 (197)
36 cd03322 rpsA The starvation se 76.0 13 0.00028 35.4 8.0 84 127-214 189-274 (361)
37 PRK10558 alpha-dehydro-beta-de 75.3 33 0.00072 31.0 10.1 67 147-214 9-78 (256)
38 COG0135 TrpF Phosphoribosylant 73.8 21 0.00045 31.2 8.0 89 107-209 11-102 (208)
39 PRK01222 N-(5'-phosphoribosyl) 73.8 9.2 0.0002 33.4 5.9 74 107-187 12-86 (210)
40 COG1140 NarY Nitrate reductase 73.4 1.8 3.9E-05 40.7 1.4 54 154-207 263-317 (513)
41 TIGR00190 thiC thiamine biosyn 73.1 32 0.00069 33.0 9.5 144 40-209 75-220 (423)
42 cd04740 DHOD_1B_like Dihydroor 72.7 78 0.0017 29.0 13.9 153 40-206 100-286 (296)
43 cd03318 MLE Muconate Lactonizi 71.4 16 0.00035 34.7 7.5 72 144-215 227-300 (365)
44 TIGR01278 DPOR_BchB light-inde 70.7 60 0.0013 32.5 11.7 132 70-215 69-243 (511)
45 PF07021 MetW: Methionine bios 70.3 23 0.00051 30.5 7.4 149 46-217 5-171 (193)
46 TIGR02534 mucon_cyclo muconate 69.6 16 0.00034 34.9 7.0 74 144-217 226-301 (368)
47 PRK04452 acetyl-CoA decarbonyl 69.6 99 0.0021 29.0 12.2 94 118-214 84-184 (319)
48 cd01974 Nitrogenase_MoFe_beta 69.2 1.2E+02 0.0026 29.7 13.3 110 61-183 63-192 (435)
49 PLN02389 biotin synthase 69.2 1.1E+02 0.0023 29.5 12.4 101 39-156 116-227 (379)
50 PRK15072 bifunctional D-altron 69.1 37 0.0008 32.9 9.5 84 127-214 232-317 (404)
51 PRK10128 2-keto-3-deoxy-L-rham 69.0 66 0.0014 29.3 10.5 65 148-213 9-76 (267)
52 PRK13352 thiamine biosynthesis 68.9 45 0.00097 32.2 9.5 143 40-209 75-223 (431)
53 cd03323 D-glucarate_dehydratas 68.3 1.2E+02 0.0026 29.3 15.0 148 40-214 168-321 (395)
54 cd02070 corrinoid_protein_B12- 67.6 81 0.0017 27.2 11.9 145 40-206 9-162 (201)
55 TIGR01502 B_methylAsp_ase meth 67.3 35 0.00076 33.1 8.8 86 128-214 265-357 (408)
56 cd03325 D-galactonate_dehydrat 67.0 34 0.00074 32.4 8.7 82 127-212 202-285 (352)
57 cd01965 Nitrogenase_MoFe_beta_ 66.8 1.3E+02 0.0028 29.3 13.5 105 63-184 61-188 (428)
58 PRK07379 coproporphyrinogen II 66.5 25 0.00055 34.0 7.8 59 107-167 180-255 (400)
59 TIGR00735 hisF imidazoleglycer 65.9 82 0.0018 28.2 10.5 88 118-208 163-253 (254)
60 PRK14017 galactonate dehydrata 65.6 33 0.00072 32.9 8.4 84 127-214 203-288 (382)
61 TIGR03239 GarL 2-dehydro-3-deo 64.9 70 0.0015 28.7 9.8 66 148-214 3-71 (249)
62 cd03317 NAAAR N-acylamino acid 64.6 1.3E+02 0.0028 28.4 14.7 149 42-215 139-289 (354)
63 PRK09613 thiH thiamine biosynt 64.6 99 0.0021 30.7 11.5 170 39-210 28-237 (469)
64 PF00682 HMGL-like: HMGL-like 64.4 68 0.0015 28.2 9.7 149 39-203 11-177 (237)
65 PRK06294 coproporphyrinogen II 64.0 32 0.0007 32.8 7.9 60 106-167 167-243 (370)
66 PRK13803 bifunctional phosphor 63.8 53 0.0011 33.8 9.8 76 107-187 12-88 (610)
67 PRK03892 ribonuclease P protei 63.4 1E+02 0.0022 26.9 12.6 169 83-303 27-197 (216)
68 COG0635 HemN Coproporphyrinoge 62.8 44 0.00096 32.5 8.7 109 21-167 148-276 (416)
69 PRK00164 moaA molybdenum cofac 62.7 1.3E+02 0.0029 27.9 14.2 150 39-210 49-228 (331)
70 cd01973 Nitrogenase_VFe_beta_l 62.2 1.7E+02 0.0036 28.9 13.6 115 60-184 63-194 (454)
71 cd03327 MR_like_2 Mandelate ra 62.1 32 0.00069 32.4 7.5 82 127-212 197-280 (341)
72 PRK09427 bifunctional indole-3 62.1 30 0.00065 34.1 7.4 73 107-188 266-339 (454)
73 cd03314 MAL Methylaspartate am 60.9 98 0.0021 29.7 10.4 85 129-213 229-320 (369)
74 PRK00730 rnpA ribonuclease P; 60.7 45 0.00097 27.1 6.9 62 83-154 47-110 (138)
75 PRK02901 O-succinylbenzoate sy 60.5 56 0.0012 30.7 8.6 82 128-217 162-244 (327)
76 PLN02363 phosphoribosylanthran 60.3 44 0.00096 30.2 7.6 75 107-187 56-131 (256)
77 COG2102 Predicted ATPases of P 60.2 30 0.00064 30.5 6.2 100 140-267 74-177 (223)
78 cd04731 HisF The cyclase subun 59.5 1.3E+02 0.0027 26.7 11.1 84 118-204 157-243 (243)
79 PRK13796 GTPase YqeH; Provisio 59.4 1.7E+02 0.0036 28.0 12.6 135 23-170 35-176 (365)
80 cd03321 mandelate_racemase Man 59.2 1.6E+02 0.0035 27.8 13.0 151 40-211 141-294 (355)
81 PRK08446 coproporphyrinogen II 58.2 76 0.0017 30.0 9.3 60 106-167 162-231 (350)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 57.9 91 0.002 28.1 9.4 105 105-211 18-131 (263)
83 PRK05660 HemN family oxidoredu 57.7 62 0.0013 31.0 8.7 60 106-167 171-243 (378)
84 PF11242 DUF2774: Protein of u 57.1 14 0.00031 25.3 2.9 22 254-275 15-36 (63)
85 PF03102 NeuB: NeuB family; I 57.0 44 0.00096 29.9 7.0 111 39-168 53-183 (241)
86 PF13378 MR_MLE_C: Enolase C-t 56.9 18 0.0004 27.7 4.1 54 163-217 3-57 (111)
87 PRK05628 coproporphyrinogen II 55.9 58 0.0013 31.1 8.2 27 106-133 172-198 (375)
88 TIGR01862 N2-ase-Ialpha nitrog 55.8 2.1E+02 0.0046 28.1 12.3 137 62-214 96-271 (443)
89 cd00740 MeTr MeTr subgroup of 55.2 1.6E+02 0.0035 26.5 12.7 103 106-213 23-127 (252)
90 COG4130 Predicted sugar epimer 54.9 85 0.0018 27.6 7.9 81 166-265 50-137 (272)
91 PRK05692 hydroxymethylglutaryl 54.4 73 0.0016 29.3 8.2 103 105-210 22-138 (287)
92 cd07944 DRE_TIM_HOA_like 4-hyd 54.4 1.5E+02 0.0033 26.8 10.2 107 104-211 15-128 (266)
93 PRK13347 coproporphyrinogen II 54.4 44 0.00095 32.9 7.2 112 45-167 152-291 (453)
94 TIGR00126 deoC deoxyribose-pho 54.4 1.2E+02 0.0025 26.6 9.0 72 40-126 130-205 (211)
95 PRK08599 coproporphyrinogen II 54.1 54 0.0012 31.3 7.6 59 106-166 164-239 (377)
96 TIGR00126 deoC deoxyribose-pho 53.7 1.5E+02 0.0033 25.9 10.5 100 39-154 15-114 (211)
97 PF14871 GHL6: Hypothetical gl 53.6 30 0.00066 27.8 4.9 25 191-215 43-67 (132)
98 TIGR02026 BchE magnesium-proto 53.3 1.4E+02 0.0031 29.7 10.7 66 139-206 320-392 (497)
99 PRK06361 hypothetical protein; 53.1 1.5E+02 0.0032 25.5 17.8 186 43-274 11-201 (212)
100 TIGR01927 menC_gamma/gm+ o-suc 52.5 76 0.0016 29.4 8.1 86 127-218 183-270 (307)
101 TIGR03247 glucar-dehydr glucar 51.9 2.4E+02 0.0053 27.7 14.6 86 129-214 252-338 (441)
102 PRK09061 D-glutamate deacylase 51.2 1.5E+02 0.0033 29.6 10.6 107 44-158 171-278 (509)
103 PRK07259 dihydroorotate dehydr 51.1 2E+02 0.0043 26.4 12.4 153 40-206 102-289 (301)
104 PRK15108 biotin synthase; Prov 50.5 2.2E+02 0.0049 26.8 12.3 104 39-158 76-187 (345)
105 PRK02910 light-independent pro 50.4 2.8E+02 0.006 27.9 14.2 131 70-215 69-243 (519)
106 cd02810 DHOD_DHPD_FMN Dihydroo 49.9 2E+02 0.0044 26.1 12.7 131 40-185 109-272 (289)
107 COG1801 Uncharacterized conser 49.8 2E+02 0.0044 26.1 11.4 109 23-139 4-116 (263)
108 cd01966 Nitrogenase_NifN_1 Nit 49.6 2.6E+02 0.0056 27.2 11.7 108 63-183 61-189 (417)
109 PF09989 DUF2229: CoA enzyme a 49.3 1.9E+02 0.004 25.5 10.4 31 181-211 188-218 (221)
110 CHL00076 chlB photochlorophyll 49.0 2.9E+02 0.0063 27.7 14.0 90 126-215 116-248 (513)
111 TIGR02311 HpaI 2,4-dihydroxyhe 48.8 2E+02 0.0043 25.8 10.0 64 148-213 3-70 (249)
112 TIGR01496 DHPS dihydropteroate 48.6 2.1E+02 0.0045 25.8 10.2 99 106-212 20-125 (257)
113 PF00682 HMGL-like: HMGL-like 48.5 1E+02 0.0022 27.1 8.0 97 106-208 11-124 (237)
114 PRK12581 oxaloacetate decarbox 48.5 2.9E+02 0.0062 27.5 14.4 151 40-206 103-263 (468)
115 PRK05799 coproporphyrinogen II 48.0 92 0.002 29.6 8.2 27 106-133 163-189 (374)
116 PRK09058 coproporphyrinogen II 47.9 2E+02 0.0043 28.3 10.6 28 106-134 227-254 (449)
117 cd02801 DUS_like_FMN Dihydrour 47.3 1.9E+02 0.0041 25.1 10.6 132 40-185 65-213 (231)
118 PRK10415 tRNA-dihydrouridine s 47.1 2.4E+02 0.0053 26.3 12.8 135 40-187 75-226 (321)
119 COG0282 ackA Acetate kinase [E 47.1 1.8E+02 0.004 27.9 9.5 120 148-298 163-290 (396)
120 PTZ00413 lipoate synthase; Pro 47.0 2.7E+02 0.006 26.8 12.5 158 39-216 177-373 (398)
121 cd03320 OSBS o-Succinylbenzoat 45.8 83 0.0018 28.3 7.1 85 127-216 153-238 (263)
122 cd00405 PRAI Phosphoribosylant 45.4 2E+02 0.0042 24.7 9.6 41 126-170 73-113 (203)
123 PRK05283 deoxyribose-phosphate 45.1 1.4E+02 0.0031 26.9 8.3 78 40-128 144-227 (257)
124 TIGR02026 BchE magnesium-proto 45.0 2.6E+02 0.0057 27.8 11.1 102 106-211 222-342 (497)
125 COG0422 ThiC Thiamine biosynth 44.9 2.9E+02 0.0063 26.5 10.4 140 39-210 75-222 (432)
126 PRK00507 deoxyribose-phosphate 44.7 1.1E+02 0.0025 26.9 7.5 74 40-125 134-208 (221)
127 PLN02746 hydroxymethylglutaryl 44.5 1.8E+02 0.0038 27.7 9.2 99 106-210 65-180 (347)
128 KOG0259 Tyrosine aminotransfer 44.4 3E+02 0.0065 26.6 14.0 152 39-221 78-248 (447)
129 PRK14461 ribosomal RNA large s 43.4 2.1E+02 0.0045 27.5 9.5 88 130-217 232-353 (371)
130 PF01876 RNase_P_p30: RNase P 43.3 63 0.0014 26.4 5.4 60 156-215 24-85 (150)
131 PRK08195 4-hyroxy-2-oxovalerat 43.1 2.9E+02 0.0063 26.0 10.5 104 104-211 20-134 (337)
132 TIGR00048 radical SAM enzyme, 43.0 86 0.0019 29.8 7.0 87 130-216 219-333 (355)
133 TIGR03217 4OH_2_O_val_ald 4-hy 42.9 2.9E+02 0.0063 26.0 10.8 105 104-211 19-133 (333)
134 PRK08208 coproporphyrinogen II 42.7 1.2E+02 0.0026 29.6 8.2 111 46-167 142-275 (430)
135 PRK14476 nitrogenase molybdenu 42.2 3.5E+02 0.0076 26.7 14.2 109 63-183 72-200 (455)
136 TIGR00538 hemN oxygen-independ 42.1 1E+02 0.0022 30.3 7.6 112 45-167 151-290 (455)
137 cd02930 DCR_FMN 2,4-dienoyl-Co 42.1 3E+02 0.0066 25.9 13.5 97 83-184 202-305 (353)
138 TIGR01228 hutU urocanate hydra 41.8 72 0.0016 31.6 6.1 117 46-176 107-245 (545)
139 PRK09856 fructoselysine 3-epim 41.6 69 0.0015 28.8 6.0 52 195-265 93-144 (275)
140 COG0502 BioB Biotin synthase a 41.5 1.9E+02 0.0042 27.3 8.8 134 39-192 84-234 (335)
141 PRK05414 urocanate hydratase; 41.5 74 0.0016 31.6 6.2 117 46-176 116-254 (556)
142 cd00945 Aldolase_Class_I Class 41.1 2.1E+02 0.0045 23.8 9.3 98 40-154 11-109 (201)
143 COG1751 Uncharacterized conser 40.6 2.1E+02 0.0046 23.7 8.1 86 131-217 3-95 (186)
144 PRK14462 ribosomal RNA large s 40.3 3.2E+02 0.0069 26.1 10.3 86 132-217 226-339 (356)
145 COG2089 SpsE Sialic acid synth 39.9 3.3E+02 0.0071 25.7 11.1 114 39-171 87-220 (347)
146 cd01297 D-aminoacylase D-amino 39.8 3.5E+02 0.0077 26.0 12.0 103 42-156 167-275 (415)
147 TIGR01430 aden_deam adenosine 39.6 3.1E+02 0.0067 25.3 14.3 104 107-215 138-242 (324)
148 COG2987 HutU Urocanate hydrata 39.4 65 0.0014 31.5 5.4 101 68-182 148-261 (561)
149 TIGR00676 fadh2 5,10-methylene 39.3 3E+02 0.0064 25.0 12.1 148 42-208 15-186 (272)
150 COG2069 CdhD CO dehydrogenase/ 38.7 3.3E+02 0.0071 25.3 10.3 94 118-216 159-262 (403)
151 TIGR00381 cdhD CO dehydrogenas 38.3 3.7E+02 0.0081 25.9 12.6 104 109-217 128-252 (389)
152 TIGR03822 AblA_like_2 lysine-2 37.4 3.5E+02 0.0075 25.2 12.2 103 40-156 120-228 (321)
153 PRK06256 biotin synthase; Vali 37.3 3.5E+02 0.0075 25.2 11.6 20 39-58 91-110 (336)
154 COG1751 Uncharacterized conser 37.3 1.2E+02 0.0026 25.1 5.8 73 40-125 12-85 (186)
155 PF14502 HTH_41: Helix-turn-he 37.2 32 0.00069 22.4 2.1 29 252-280 6-36 (48)
156 PRK06582 coproporphyrinogen II 37.0 1.7E+02 0.0037 28.2 8.1 29 105-134 173-201 (390)
157 TIGR00737 nifR3_yhdG putative 36.5 3.5E+02 0.0076 25.0 13.1 138 40-189 73-226 (319)
158 PRK06740 histidinol-phosphatas 36.4 3.7E+02 0.008 25.2 10.7 49 113-162 156-221 (331)
159 PRK02083 imidazole glycerol ph 36.2 3.1E+02 0.0068 24.4 11.2 86 120-208 163-251 (253)
160 TIGR01861 ANFD nitrogenase iro 36.1 4.7E+02 0.01 26.3 12.2 138 62-214 106-282 (513)
161 PRK12928 lipoyl synthase; Prov 36.1 3.5E+02 0.0076 24.9 10.6 161 39-214 87-280 (290)
162 PF07287 DUF1446: Protein of u 36.1 1.1E+02 0.0023 29.3 6.4 18 195-212 61-78 (362)
163 PRK06424 transcription factor; 35.6 83 0.0018 25.7 4.9 81 194-275 22-109 (144)
164 PRK15440 L-rhamnonate dehydrat 35.2 1.2E+02 0.0026 29.3 6.7 68 144-211 247-318 (394)
165 smart00642 Aamy Alpha-amylase 35.2 62 0.0014 27.0 4.2 22 194-215 72-93 (166)
166 PRK01045 ispH 4-hydroxy-3-meth 35.2 1.8E+02 0.0039 27.0 7.5 108 155-297 156-275 (298)
167 cd07943 DRE_TIM_HOA 4-hydroxy- 35.2 3.3E+02 0.0072 24.4 16.2 146 38-204 18-182 (263)
168 COG4943 Predicted signal trans 34.8 4.1E+02 0.009 26.4 10.0 126 71-211 341-477 (524)
169 TIGR02932 vnfK_nitrog V-contai 34.7 4.6E+02 0.01 25.9 13.5 111 61-184 67-198 (457)
170 COG1121 ZnuC ABC-type Mn/Zn tr 34.6 1.8E+02 0.0039 26.3 7.3 66 107-175 113-207 (254)
171 PLN02444 HMP-P synthase 34.3 2.9E+02 0.0064 28.0 9.1 141 40-209 235-378 (642)
172 cd00248 Mth938-like Mth938-lik 34.2 1.2E+02 0.0025 23.5 5.3 52 162-213 36-87 (109)
173 TIGR03597 GTPase_YqeH ribosome 34.2 3.3E+02 0.0072 25.8 9.5 136 22-170 28-170 (360)
174 PF00697 PRAI: N-(5'phosphorib 33.9 42 0.0009 28.9 3.0 67 118-188 14-81 (197)
175 PRK00912 ribonuclease P protei 33.8 3.3E+02 0.0072 23.9 11.7 25 41-65 15-39 (237)
176 PRK07094 biotin synthase; Prov 33.5 3E+02 0.0066 25.4 9.0 22 39-60 70-91 (323)
177 PRK14457 ribosomal RNA large s 33.4 4.2E+02 0.0092 25.1 16.3 106 111-216 196-330 (345)
178 PRK06015 keto-hydroxyglutarate 33.3 1.1E+02 0.0023 26.7 5.4 60 144-210 42-102 (201)
179 PRK09249 coproporphyrinogen II 33.0 2.1E+02 0.0047 28.0 8.3 25 107-132 216-240 (453)
180 COG2355 Zn-dependent dipeptida 32.7 2.9E+02 0.0064 25.8 8.5 106 43-164 150-260 (313)
181 cd02932 OYE_YqiM_FMN Old yello 32.5 4.2E+02 0.0091 24.7 13.5 94 83-184 219-319 (336)
182 COG3215 PilZ Tfp pilus assembl 32.5 2E+02 0.0044 22.0 6.0 79 40-120 18-105 (117)
183 TIGR03822 AblA_like_2 lysine-2 32.5 4.2E+02 0.009 24.7 12.7 92 127-218 137-240 (321)
184 PF13407 Peripla_BP_4: Peripla 32.4 1.7E+02 0.0036 25.5 6.9 52 109-166 14-65 (257)
185 PRK14459 ribosomal RNA large s 32.3 2.8E+02 0.006 26.7 8.5 90 128-217 240-360 (373)
186 TIGR01378 thi_PPkinase thiamin 32.3 1.9E+02 0.0042 24.9 7.0 38 263-300 71-110 (203)
187 TIGR01182 eda Entner-Doudoroff 32.2 1.5E+02 0.0032 25.8 6.1 81 115-210 25-106 (204)
188 cd07939 DRE_TIM_NifV Streptomy 32.1 3.7E+02 0.0081 24.0 11.1 105 104-216 15-134 (259)
189 PRK07328 histidinol-phosphatas 32.0 3.8E+02 0.0082 24.1 14.2 22 43-64 19-40 (269)
190 TIGR00216 ispH_lytB (E)-4-hydr 31.6 2.6E+02 0.0057 25.7 7.9 44 253-297 224-273 (280)
191 PF00072 Response_reg: Respons 31.5 1.4E+02 0.003 22.0 5.4 64 120-186 37-102 (112)
192 cd08590 PI-PLCc_Rv2075c_like C 31.3 2E+02 0.0043 26.2 7.1 17 47-63 46-62 (267)
193 PRK09284 thiamine biosynthesis 31.3 4.2E+02 0.009 26.9 9.5 83 105-209 291-373 (607)
194 PF11020 DUF2610: Domain of un 31.2 1E+02 0.0023 22.3 4.1 27 247-273 49-75 (82)
195 COG4464 CapC Capsular polysacc 31.1 1.9E+02 0.0042 25.5 6.5 29 40-68 18-46 (254)
196 cd03329 MR_like_4 Mandelate ra 31.0 4.6E+02 0.01 24.8 15.1 152 40-212 143-299 (368)
197 PF01402 RHH_1: Ribbon-helix-h 31.0 71 0.0015 19.1 3.0 21 250-270 9-29 (39)
198 cd03326 MR_like_1 Mandelate ra 30.9 2E+02 0.0042 27.7 7.4 78 127-208 231-314 (385)
199 PF10668 Phage_terminase: Phag 30.9 84 0.0018 21.5 3.5 17 254-270 24-40 (60)
200 COG3623 SgaU Putative L-xylulo 30.7 98 0.0021 27.6 4.7 76 16-92 65-155 (287)
201 PLN00191 enolase 30.7 3.6E+02 0.0077 26.7 9.2 96 107-211 296-394 (457)
202 PF01904 DUF72: Protein of unk 30.5 3.8E+02 0.0082 23.6 10.8 129 56-211 19-148 (230)
203 COG0159 TrpA Tryptophan syntha 30.2 3.8E+02 0.0082 24.4 8.5 94 109-206 2-123 (265)
204 cd02069 methionine_synthase_B1 29.9 3.8E+02 0.0081 23.4 10.8 146 40-207 13-169 (213)
205 TIGR02090 LEU1_arch isopropylm 29.8 4.9E+02 0.011 24.7 10.0 24 39-62 19-42 (363)
206 COG1151 6Fe-6S prismane cluste 29.7 3.3E+02 0.0072 27.6 8.6 51 109-162 360-413 (576)
207 PRK11194 ribosomal RNA large s 29.6 5.1E+02 0.011 24.9 9.8 86 131-216 221-337 (372)
208 PRK11815 tRNA-dihydrouridine s 29.4 4.8E+02 0.01 24.4 10.3 133 40-185 75-233 (333)
209 TIGR00742 yjbN tRNA dihydrouri 29.3 4.7E+02 0.01 24.4 11.5 134 40-185 65-223 (318)
210 PRK01313 rnpA ribonuclease P; 28.8 2.8E+02 0.0061 22.2 6.8 61 83-153 48-113 (129)
211 PRK05588 histidinol-phosphatas 28.7 4.2E+02 0.0091 23.5 9.8 78 43-136 17-103 (255)
212 TIGR01060 eno phosphopyruvate 28.6 5.6E+02 0.012 25.0 10.5 95 107-210 263-362 (425)
213 PRK12360 4-hydroxy-3-methylbut 28.5 3.6E+02 0.0078 24.8 8.3 43 254-297 226-274 (281)
214 COG2256 MGS1 ATPase related to 28.4 3.7E+02 0.0081 26.2 8.5 102 46-166 37-142 (436)
215 cd07948 DRE_TIM_HCS Saccharomy 28.4 3.3E+02 0.0071 24.6 8.0 99 105-211 18-131 (262)
216 PF04476 DUF556: Protein of un 28.3 4.3E+02 0.0093 23.6 10.7 150 40-208 9-183 (235)
217 PF01118 Semialdhyde_dh: Semia 28.2 79 0.0017 24.6 3.5 27 40-66 75-101 (121)
218 PF02679 ComA: (2R)-phospho-3- 28.2 77 0.0017 28.4 3.8 98 112-210 24-131 (244)
219 TIGR03693 ocin_ThiF_like putat 28.0 6.7E+02 0.015 25.9 10.6 166 41-222 71-248 (637)
220 PF01207 Dus: Dihydrouridine s 27.9 2.8E+02 0.0061 25.7 7.7 133 40-184 64-212 (309)
221 PF02401 LYTB: LytB protein; 27.8 1.8E+02 0.0039 26.7 6.2 107 155-297 155-274 (281)
222 PRK05904 coproporphyrinogen II 27.7 3.1E+02 0.0067 26.0 8.1 27 106-133 167-193 (353)
223 TIGR02660 nifV_homocitr homoci 27.6 5.4E+02 0.012 24.4 9.8 97 105-209 19-130 (365)
224 PRK14477 bifunctional nitrogen 27.5 8.3E+02 0.018 26.6 13.4 104 63-183 551-676 (917)
225 TIGR00433 bioB biotin syntheta 27.5 4.6E+02 0.01 23.7 12.3 135 39-191 62-211 (296)
226 TIGR03849 arch_ComA phosphosul 27.1 2.1E+02 0.0046 25.6 6.3 97 112-210 11-118 (237)
227 cd01320 ADA Adenosine deaminas 27.1 3.2E+02 0.0069 25.2 8.0 105 106-211 66-192 (325)
228 COG0218 Predicted GTPase [Gene 27.0 4.2E+02 0.0091 23.0 10.4 115 21-153 75-197 (200)
229 TIGR00035 asp_race aspartate r 27.0 3.7E+02 0.008 23.5 8.0 62 107-169 15-88 (229)
230 PRK04390 rnpA ribonuclease P; 26.9 3.1E+02 0.0067 21.5 7.0 48 107-154 60-110 (120)
231 COG2949 SanA Uncharacterized m 26.8 4.4E+02 0.0095 23.2 8.6 97 110-212 77-180 (235)
232 TIGR03217 4OH_2_O_val_ald 4-hy 26.2 5.5E+02 0.012 24.1 16.8 25 38-62 20-44 (333)
233 cd03313 enolase Enolase: Enola 26.2 6.1E+02 0.013 24.6 10.5 96 106-210 261-361 (408)
234 PRK02714 O-succinylbenzoate sy 25.9 5.4E+02 0.012 23.9 15.7 85 127-217 192-277 (320)
235 PRK05406 LamB/YcsF family prot 25.9 2.5E+02 0.0054 25.3 6.5 81 25-122 13-95 (246)
236 PF05368 NmrA: NmrA-like famil 25.7 2.5E+02 0.0054 24.2 6.7 94 113-217 12-106 (233)
237 PRK05458 guanosine 5'-monophos 25.7 5E+02 0.011 24.4 8.9 124 78-210 17-145 (326)
238 TIGR00789 flhB_rel flhB C-term 25.6 93 0.002 22.8 3.2 25 195-219 30-54 (82)
239 cd04742 NPD_FabD 2-Nitropropan 25.6 2.7E+02 0.0058 27.2 7.2 66 146-212 29-102 (418)
240 smart00052 EAL Putative diguan 25.4 4.1E+02 0.009 22.7 8.1 98 110-211 100-209 (241)
241 smart00148 PLCXc Phospholipase 25.3 2.4E+02 0.0052 22.5 5.9 49 45-93 31-97 (135)
242 PF00356 LacI: Bacterial regul 25.3 62 0.0013 20.8 2.0 42 255-302 2-43 (46)
243 COG0820 Predicted Fe-S-cluster 25.3 4.4E+02 0.0096 25.0 8.3 88 130-218 216-332 (349)
244 PRK14457 ribosomal RNA large s 25.2 5.9E+02 0.013 24.1 12.8 135 82-217 99-265 (345)
245 PRK00077 eno enolase; Provisio 24.9 6.5E+02 0.014 24.5 11.1 96 106-210 261-361 (425)
246 PRK13210 putative L-xylulose 5 24.9 4.1E+02 0.0088 23.7 8.2 17 195-211 97-113 (284)
247 COG0761 lytB 4-Hydroxy-3-methy 24.9 2.6E+02 0.0057 25.7 6.5 70 194-298 203-278 (294)
248 PF07994 NAD_binding_5: Myo-in 24.8 3.7E+02 0.0081 24.8 7.7 145 107-293 130-283 (295)
249 PRK08776 cystathionine gamma-s 24.7 6.4E+02 0.014 24.3 10.4 86 128-217 100-187 (405)
250 COG2185 Sbm Methylmalonyl-CoA 24.6 3.9E+02 0.0085 21.8 7.1 76 156-265 16-93 (143)
251 PTZ00081 enolase; Provisional 24.5 6.8E+02 0.015 24.6 10.0 97 106-211 281-382 (439)
252 PLN02428 lipoic acid synthase 24.3 6.2E+02 0.013 24.1 9.7 158 39-216 130-325 (349)
253 TIGR02351 thiH thiazole biosyn 24.2 6.2E+02 0.013 24.0 9.8 101 39-156 103-215 (366)
254 PRK09240 thiH thiamine biosynt 24.1 6.3E+02 0.014 24.0 10.9 100 104-207 102-217 (371)
255 PF01175 Urocanase: Urocanase; 24.0 1.6E+02 0.0034 29.4 5.2 117 46-176 106-244 (546)
256 PRK09856 fructoselysine 3-epim 23.9 3.6E+02 0.0077 24.0 7.5 50 167-216 15-71 (275)
257 PRK03459 rnpA ribonuclease P; 23.8 3.6E+02 0.0079 21.2 6.8 63 82-154 48-114 (122)
258 PRK12569 hypothetical protein; 23.7 3.1E+02 0.0066 24.7 6.7 82 25-123 14-99 (245)
259 PF00809 Pterin_bind: Pterin b 23.7 4.3E+02 0.0093 22.8 7.7 90 119-214 28-125 (210)
260 PRK14465 ribosomal RNA large s 23.4 6.4E+02 0.014 23.9 9.2 87 130-216 216-329 (342)
261 PHA02128 hypothetical protein 23.4 2.3E+02 0.0049 21.9 4.9 69 143-211 61-150 (151)
262 PRK14466 ribosomal RNA large s 23.3 4E+02 0.0087 25.3 7.8 102 83-188 102-215 (345)
263 TIGR01428 HAD_type_II 2-haloal 23.3 1.8E+02 0.0038 24.5 5.1 64 111-176 61-128 (198)
264 COG1168 MalY Bifunctional PLP- 23.3 1.4E+02 0.0031 28.5 4.7 140 40-214 39-203 (388)
265 TIGR02082 metH 5-methyltetrahy 23.0 1.1E+03 0.024 26.5 14.1 89 121-212 379-471 (1178)
266 cd00739 DHPS DHPS subgroup of 23.0 5.6E+02 0.012 23.0 9.3 116 46-166 87-209 (257)
267 PRK06298 type III secretion sy 23.0 75 0.0016 30.3 2.9 26 195-220 293-318 (356)
268 PF03102 NeuB: NeuB family; I 23.0 1.3E+02 0.0027 27.0 4.2 31 270-300 105-135 (241)
269 COG1387 HIS2 Histidinol phosph 23.0 5.3E+02 0.012 22.8 10.4 151 44-209 18-190 (237)
270 cd00408 DHDPS-like Dihydrodipi 22.9 5.6E+02 0.012 23.0 18.2 131 39-188 15-160 (281)
271 PF01081 Aldolase: KDPG and KH 22.8 2.2E+02 0.0047 24.6 5.5 46 158-210 60-106 (196)
272 cd03324 rTSbeta_L-fuconate_deh 22.7 7.1E+02 0.015 24.2 15.1 152 40-212 196-352 (415)
273 COG2159 Predicted metal-depend 22.5 5.6E+02 0.012 23.5 8.6 95 119-215 55-167 (293)
274 PF00388 PI-PLC-X: Phosphatidy 22.5 58 0.0013 26.3 1.8 18 46-63 30-47 (146)
275 COG1832 Predicted CoA-binding 22.3 4.1E+02 0.0088 21.6 6.5 35 40-77 28-62 (140)
276 PRK14453 chloramphenicol/florf 22.3 6.7E+02 0.015 23.7 9.6 93 125-217 203-331 (347)
277 TIGR01290 nifB nitrogenase cof 22.3 7.5E+02 0.016 24.3 13.3 108 105-217 59-199 (442)
278 PRK14470 ribosomal RNA large s 22.3 4.9E+02 0.011 24.6 8.2 87 130-216 208-322 (336)
279 cd08556 GDPD Glycerophosphodie 22.0 4.3E+02 0.0094 21.6 7.3 151 40-213 11-168 (189)
280 PF14606 Lipase_GDSL_3: GDSL-l 21.9 4.6E+02 0.0099 22.3 7.1 109 18-136 33-146 (178)
281 TIGR01284 alt_nitrog_alph nitr 21.8 7.7E+02 0.017 24.2 13.3 137 63-214 104-279 (457)
282 COG0135 TrpF Phosphoribosylant 21.8 1.9E+02 0.0041 25.3 4.9 96 40-165 11-110 (208)
283 cd05560 Xcc1710_like Xcc1710_l 21.8 2.5E+02 0.0055 21.6 5.2 51 162-213 37-87 (109)
284 PF00289 CPSase_L_chain: Carba 21.8 3.8E+02 0.0082 20.6 8.0 92 108-212 10-106 (110)
285 COG2089 SpsE Sialic acid synth 21.7 2.3E+02 0.005 26.6 5.6 22 194-216 92-113 (347)
286 PF13518 HTH_28: Helix-turn-he 21.7 1E+02 0.0022 19.5 2.6 22 254-276 14-35 (52)
287 cd00959 DeoC 2-deoxyribose-5-p 21.6 4.9E+02 0.011 22.3 7.6 75 40-125 129-203 (203)
288 PRK14463 ribosomal RNA large s 21.6 7E+02 0.015 23.6 9.2 70 104-175 129-203 (349)
289 cd08583 PI-PLCc_GDPD_SF_unchar 21.5 5.5E+02 0.012 22.4 9.0 22 40-61 13-34 (237)
290 TIGR03471 HpnJ hopanoid biosyn 21.5 7.8E+02 0.017 24.2 12.2 69 139-207 320-393 (472)
291 COG2055 Malate/L-lactate dehyd 21.1 5.6E+02 0.012 24.4 8.1 88 105-210 5-113 (349)
292 KOG0059 Lipid exporter ABCA1 a 21.0 4.5E+02 0.0097 28.5 8.6 71 105-177 669-768 (885)
293 cd07948 DRE_TIM_HCS Saccharomy 21.0 6.2E+02 0.013 22.8 12.3 105 39-163 19-133 (262)
294 cd01977 Nitrogenase_VFe_alpha 21.0 7.6E+02 0.016 23.8 12.9 140 60-214 64-242 (415)
295 TIGR03471 HpnJ hopanoid biosyn 21.0 8E+02 0.017 24.1 12.7 103 105-212 226-343 (472)
296 PF01476 LysM: LysM domain; I 20.9 97 0.0021 18.9 2.3 18 253-270 7-24 (44)
297 PRK14456 ribosomal RNA large s 20.8 6E+02 0.013 24.3 8.6 87 130-216 238-353 (368)
298 PRK08195 4-hyroxy-2-oxovalerat 20.7 7.1E+02 0.015 23.4 16.9 25 38-62 21-45 (337)
299 PRK01903 rnpA ribonuclease P; 20.7 4.4E+02 0.0096 21.1 6.6 47 107-153 66-128 (133)
300 PRK02842 light-independent pro 20.7 7.2E+02 0.016 24.1 9.4 99 70-182 80-195 (427)
301 PRK13602 putative ribosomal pr 20.7 3.4E+02 0.0073 19.7 5.7 58 148-212 3-60 (82)
302 PRK13109 flhB flagellar biosyn 20.6 87 0.0019 29.9 2.8 26 195-220 301-326 (358)
303 cd00885 cinA Competence-damage 20.6 1.7E+02 0.0036 24.6 4.3 48 44-95 21-69 (170)
304 cd01971 Nitrogenase_VnfN_like 20.5 6.6E+02 0.014 24.4 9.0 105 63-184 66-192 (427)
305 PRK07531 bifunctional 3-hydrox 20.5 6.6E+02 0.014 25.0 9.2 124 125-273 79-217 (495)
306 COG3737 Uncharacterized conser 20.5 2E+02 0.0043 22.7 4.2 50 166-215 56-106 (127)
307 PRK00499 rnpA ribonuclease P; 20.4 4.1E+02 0.0089 20.5 6.7 62 83-154 39-104 (114)
308 PRK12721 secretion system appa 20.3 90 0.0019 29.7 2.8 26 195-220 292-317 (349)
309 PRK05283 deoxyribose-phosphate 20.3 6.5E+02 0.014 22.8 9.8 141 38-211 22-166 (257)
310 TIGR02814 pfaD_fam PfaD family 20.2 3.8E+02 0.0082 26.4 7.1 66 146-212 34-107 (444)
311 PF07476 MAAL_C: Methylasparta 20.2 6.2E+02 0.013 22.5 8.6 81 130-210 107-194 (248)
312 TIGR02931 anfK_nitrog Fe-only 20.2 8.4E+02 0.018 24.0 13.8 110 61-183 70-200 (461)
313 PRK09413 IS2 repressor TnpA; R 20.2 1.5E+02 0.0032 23.2 3.7 40 40-81 14-53 (121)
314 PF10171 DUF2366: Uncharacteri 20.1 2E+02 0.0044 24.3 4.6 39 127-165 78-116 (173)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9.2e-71 Score=510.57 Aligned_cols=306 Identities=43% Similarity=0.686 Sum_probs=274.3
Q ss_pred CCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCC-CCCeE
Q 019000 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLP-RKKIQ 87 (347)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~v~ 87 (347)
|++|+||++|++||+||||||++|+.+. ..+.+++.++|++|+|+||||||||+.||.|.||++||++|+... |++|+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 7899999999999999999999986422 225557788999999999999999999999999999999999854 89999
Q ss_pred EEeeeecccCCCccc-cCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCC
Q 019000 88 LASKFGVVSMAPTSV-IVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEAS 166 (347)
Q Consensus 88 i~tK~~~~~~~~~~~-~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~ 166 (347)
|+||++......... ..+.++++|+++++.||+|||||||||||+||||+..+.++++++|.+|+++||||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999999886532111 2577999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccC-CCCCCCc
Q 019000 167 PDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISH-PRFTGEN 244 (347)
Q Consensus 167 ~~~l~~~~~~-~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~-~~~~~~~ 244 (347)
.+++.++++. .+++++|.+||+++|..+.+++++|+++||++++||||++|+|++++... ..+.+... +.+..+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~~ 236 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQREL 236 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhhh
Confidence 9999999999 59999999999999887778999999999999999999999999994432 22333333 5566667
Q ss_pred cchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019000 245 LGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPI 318 (347)
Q Consensus 245 ~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 318 (347)
.......++.++.+|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|++++++.|++....
T Consensus 237 ~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 237 TERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 77888999999999999999999999999999999999999999999999999999999999999999988654
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3e-69 Score=490.83 Aligned_cols=316 Identities=45% Similarity=0.728 Sum_probs=282.0
Q ss_pred CCCCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCC
Q 019000 7 IQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRK 84 (347)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~ 84 (347)
..|+|+.+|++|++||++|||||.+. .|+...+++++.+++++|+|+|+|+||||++||+|.||.++|++|++. +|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~-~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWT-TFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeee-ccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 45999999999999999999997443 345557999999999999999999999999999999999999999985 799
Q ss_pred CeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCC
Q 019000 85 KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE 164 (347)
Q Consensus 85 ~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~ 164 (347)
+|+|+||++..... ......+...+.+.++.||+|||++||||||+||+|+.++.++++++|.+++++|+||+||+|+
T Consensus 89 ~vviaTK~~~~~~~--~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDYGG--ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccCCC--cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 99999999977622 2235668889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhcCC--cceeeeeccccccch-hhhHHHHHHHhCCcEEecccCccccCCCC-CcCCCCCCCccccc----
Q 019000 165 ASPDTIRRAHAVHP--ITAVQMEWSLLTRDI-EEEIIPLCRELGIGIVPYSPLGRGLLGGK-AVVESLPANSFLIS---- 236 (347)
Q Consensus 165 ~~~~~l~~~~~~~~--~~~vq~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~-~~~~~~~~~~~~~~---- 236 (347)
++++++.+++...+ +.++|++||++.|+. +.++++.|+++||++++||||++|+|+++ ...+..+..+.+..
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~ 246 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGL 246 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccc
Confidence 99999999999987 999999999999984 46699999999999999999999999999 54455555544332
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 019000 237 HPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFV 316 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 316 (347)
.+.+..+ ..++..++++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.+.|+++++..|+++.
T Consensus 247 ~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~ 324 (336)
T KOG1575|consen 247 SPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEII 324 (336)
T ss_pred ccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhh
Confidence 2223222 55788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCC
Q 019000 317 PIEEVAGDRTY 327 (347)
Q Consensus 317 ~~~~~~~~~~~ 327 (347)
+.....++++.
T Consensus 325 ~~~~~~~~~~~ 335 (336)
T KOG1575|consen 325 DKILGFGPRSI 335 (336)
T ss_pred ccccCcCCCCC
Confidence 99888888775
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.4e-63 Score=464.21 Aligned_cols=298 Identities=30% Similarity=0.463 Sum_probs=251.4
Q ss_pred eeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCCCeEE
Q 019000 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQL 88 (347)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~~v~i 88 (347)
||+||++|++||+||||||++ +|...+.+++.++|+.|+++|||+||||+.||.|.||++||++|+.. +|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 23334788999999999999999999999999999999999999853 5999999
Q ss_pred EeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHH
Q 019000 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPD 168 (347)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~ 168 (347)
+||++...... ...+.+++.+++++++||+||||||||+|++|||++..+++++|++|++|+++||||+||+|||+.+
T Consensus 78 aTK~~~~~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 99986421110 1124689999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhc------CCcceeeeeccccccch-hhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCC---
Q 019000 169 TIRRAHAV------HPITAVQMEWSLLTRDI-EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHP--- 238 (347)
Q Consensus 169 ~l~~~~~~------~~~~~vq~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~--- 238 (347)
+++++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++... ++.+ .+...+
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~-~~~~~~~~~ 233 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPY-SRATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCc-ccccccccc
Confidence 98776442 46789999999999873 668999999999999999999999999984322 2221 121111
Q ss_pred CCC----CCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCC--CCCHHHHHHH
Q 019000 239 RFT----GENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMM--KLTKEDMKEI 312 (347)
Q Consensus 239 ~~~----~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~--~L~~~~~~~l 312 (347)
++. .+........++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 111 1222235667789999999999999999999999999999999999999999999999987 9999999999
Q ss_pred Hhh
Q 019000 313 LNF 315 (347)
Q Consensus 313 ~~~ 315 (347)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=9.3e-63 Score=464.92 Aligned_cols=312 Identities=27% Similarity=0.469 Sum_probs=257.6
Q ss_pred CCCC-CCCCCCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCC--CchHHHHHHH
Q 019000 1 MAED-KKIQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGA--HANEVLVGKV 77 (347)
Q Consensus 1 m~~~-~~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~sE~~lG~~ 77 (347)
||.+ ..-.|+||+||+||++||+||||||+. +|...+.+++.++|++|+++|||+||||+.||+ |.||+.||++
T Consensus 4 ~~~~~~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~ 80 (346)
T PRK09912 4 LANPERYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRL 80 (346)
T ss_pred eccCCCCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHH
Confidence 3444 334499999999999999999999973 333336678899999999999999999999995 8999999999
Q ss_pred HhcC---CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019000 78 LKQL---PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE 154 (347)
Q Consensus 78 l~~~---~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (347)
|++. .|+++||+||+|...... ....+.+++.+++++++||+|||+||||+|++|+|++..+.+++|++|++|+++
T Consensus 81 l~~~~~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~ 159 (346)
T PRK09912 81 LREDFAAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQS 159 (346)
T ss_pred HHhcccCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHc
Confidence 9863 599999999998532111 111246899999999999999999999999999999888899999999999999
Q ss_pred CccceEecCCCCHHHHHHHhhc-----CCcceeeeeccccccchh-hhHHHHHHHhCCcEEecccCccccCCCCCcCCCC
Q 019000 155 GKIKYIGLSEASPDTIRRAHAV-----HPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESL 228 (347)
Q Consensus 155 G~Ir~iGvS~~~~~~l~~~~~~-----~~~~~vq~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~ 228 (347)
||||+||||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .
T Consensus 160 GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~ 238 (346)
T PRK09912 160 GKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-I 238 (346)
T ss_pred CCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-C
Confidence 9999999999999988765542 367899999999998654 47999999999999999999999999874221 1
Q ss_pred CCCccccc-----CCCCCCCcc-chhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhcc-C
Q 019000 229 PANSFLIS-----HPRFTGENL-GKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSL-M 301 (347)
Q Consensus 229 ~~~~~~~~-----~~~~~~~~~-~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~-~ 301 (347)
+. +.+.. .+.|.+..+ ...+...+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++ .
T Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~ 317 (346)
T PRK09912 239 PQ-DSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNN 317 (346)
T ss_pred CC-CccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcC
Confidence 21 11100 011222211 2345677899999999999999999999999999999999999999999999998 4
Q ss_pred CCCCHHHHHHHHhhCCC
Q 019000 302 MKLTKEDMKEILNFVPI 318 (347)
Q Consensus 302 ~~L~~~~~~~l~~~~~~ 318 (347)
++|+++++++|+++.++
T Consensus 318 ~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 318 LTFSTEELAQIDQHIAD 334 (346)
T ss_pred CCCCHHHHHHHHHhhCc
Confidence 89999999999998755
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9.5e-63 Score=465.49 Aligned_cols=304 Identities=30% Similarity=0.387 Sum_probs=253.9
Q ss_pred CCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCC-------CCchHHHHHHHHhcC
Q 019000 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYG-------AHANEVLVGKVLKQL 81 (347)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~g~sE~~lG~~l~~~ 81 (347)
|+||+||+||++||+||||||++|. ..+.+++.++|+.|+++|||+||||+.|| .|.||.+||++|++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 23678999999999999999999999998 489999999999853
Q ss_pred -CCCCeEEEeeeecccCCCcc---ccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCC-----------------CCC
Q 019000 82 -PRKKIQLASKFGVVSMAPTS---VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-----------------SVP 140 (347)
Q Consensus 82 -~R~~v~i~tK~~~~~~~~~~---~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~-----------------~~~ 140 (347)
.|++++|+||++........ ...+.+++.+++++++||+|||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 69999999999642211000 012468999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc------CCcceeeeeccccccchhhhHHHHHHHhCCcEEecccC
Q 019000 141 IEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV------HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 141 ~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~------~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 214 (347)
++++|++|++|+++||||+||+|||+.+++++++.. ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776432 35778999999999876678999999999999999999
Q ss_pred ccccCCCCCcCCCCCCCcccc-cCCCCCCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHH
Q 019000 215 GRGLLGGKAVVESLPANSFLI-SHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNL 293 (347)
Q Consensus 215 ~~G~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l 293 (347)
++|+|+++......+. +.+. ..+.|...........++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||
T Consensus 237 ~~G~Ltg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLTGKYLNGAKPA-GARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeeccCCCCCCCCCC-CcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 9999999743222222 1111 0111222122345667889999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHhhCC
Q 019000 294 DENIGSLMMKLTKEDMKEILNFVP 317 (347)
Q Consensus 294 ~enl~a~~~~L~~~~~~~l~~~~~ 317 (347)
++|+++++++|+++++++|+++.+
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999864
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.1e-63 Score=443.54 Aligned_cols=259 Identities=32% Similarity=0.528 Sum_probs=232.4
Q ss_pred CCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCCCe
Q 019000 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKI 86 (347)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~~v 86 (347)
+.+.+| ++|.+||.||||||++++ .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++. +|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 445677 667889999999999752 23389999999999999999999999 999999999984 89999
Q ss_pred EEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC--CCHHHHHHHHHHHHHcCccceEecCC
Q 019000 87 QLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS--VPIEDTIGELKMLVVEGKIKYIGLSE 164 (347)
Q Consensus 87 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~Ir~iGvS~ 164 (347)
||+||++.. +.+++.+.+++++||+|||+||||||+||||.+. ..++++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~---------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPS---------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCc---------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 999999876 4578999999999999999999999999999763 23689999999999999999999999
Q ss_pred CCHHHHHHHhhcC--CcceeeeeccccccchhhhHHHHHHHhCCcEEecccCcccc-CCCCCcCCCCCCCcccccCCCCC
Q 019000 165 ASPDTIRRAHAVH--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL-LGGKAVVESLPANSFLISHPRFT 241 (347)
Q Consensus 165 ~~~~~l~~~~~~~--~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
|+.++|+++++.. .+.++|++||++.+.. +++++|+++||.++|||||++|. +...
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~------------------- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------------- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC-------------------
Confidence 9999999998874 4789999999999954 59999999999999999999753 2211
Q ss_pred CCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCCcc
Q 019000 242 GENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPIEEV 321 (347)
Q Consensus 242 ~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 321 (347)
+.+.+||++||.|++|++|+|+++++ ++|||.+++++|+++|++++++.||+|||+.|+++......
T Consensus 202 -----------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 202 -----------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred -----------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 38999999999999999999999999 89999999999999999999999999999999999887543
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.3e-60 Score=443.63 Aligned_cols=287 Identities=28% Similarity=0.462 Sum_probs=244.9
Q ss_pred eeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCCCeEE
Q 019000 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQL 88 (347)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~~v~i 88 (347)
||+||+||++||+||||||++|+.|+. ++.+++.++|++|+++|||+||||+.||.|.||..+|++|++. +|+++||
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999876664 4788999999999999999999999999999999999999873 6999999
Q ss_pred EeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC---CCHHHHHHHHHHHHHcCccceEecCCC
Q 019000 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS---VPIEDTIGELKMLVVEGKIKYIGLSEA 165 (347)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~Ir~iGvS~~ 165 (347)
+||++..... .+++++.+++++++||+|||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~~-----~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGEG-----FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCCC-----CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 9999843211 24689999999999999999999999999999642 346789999999999999999999999
Q ss_pred CHHHHHHHhhc---CCcce--eeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCC
Q 019000 166 SPDTIRRAHAV---HPITA--VQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRF 240 (347)
Q Consensus 166 ~~~~l~~~~~~---~~~~~--vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (347)
++++++.+... ..+++ +|+.||+.++.. .+++++|+++||++++|+||++|+|+++..+. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~ 220 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------W 220 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------C
Confidence 99888776653 22344 578889877643 58999999999999999999999999863110 1
Q ss_pred CCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccC----CCCCHHHHHHHHhhC
Q 019000 241 TGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLM----MKLTKEDMKEILNFV 316 (347)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~----~~L~~~~~~~l~~~~ 316 (347)
.+ ........++.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++. .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 10 1123456678899999999999999999999999999999999999999999999975 379999999999887
Q ss_pred CC
Q 019000 317 PI 318 (347)
Q Consensus 317 ~~ 318 (347)
..
T Consensus 300 ~~ 301 (314)
T PLN02587 300 AP 301 (314)
T ss_pred cc
Confidence 53
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-58 Score=426.51 Aligned_cols=281 Identities=42% Similarity=0.695 Sum_probs=250.4
Q ss_pred eeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCC-CCCeEEE
Q 019000 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLP-RKKIQLA 89 (347)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~v~i~ 89 (347)
+|+||+||+.||+||||||.++..+ .+.+++.+++++|++.|||+||||+.||.|.||+.+|++|++.. |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 37889999999999999999999999999999999999999864 9999999
Q ss_pred eeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCccceEecCCCCHH
Q 019000 90 SKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTIGELKMLVVEGKIKYIGLSEASPD 168 (347)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~Ir~iGvS~~~~~ 168 (347)
||++...... .+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||+|||+.+
T Consensus 78 tK~~~~~~~~----~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGDG----RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCCC----CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 9998653211 3468999999999999999999999999999987765 8899999999999999999999999999
Q ss_pred HHHHHhhc--CCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccc
Q 019000 169 TIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLG 246 (347)
Q Consensus 169 ~l~~~~~~--~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (347)
.+.++++. .+++++|++||++++....+++++|+++||++++|+||++|.|+++......+
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~----------------- 216 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPP----------------- 216 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCC-----------------
Confidence 99999888 78999999999999976567999999999999999999999988662211100
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 019000 247 KNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNF 315 (347)
Q Consensus 247 ~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 315 (347)
........+..+++++++|++|+||+|++++|.+++||+|+++++||++|+++..++|++++++.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 217 PEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred ChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 001145689999999999999999999999999999999999999999999999999999999999863
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-58 Score=424.42 Aligned_cols=273 Identities=28% Similarity=0.494 Sum_probs=236.7
Q ss_pred eecCCCCccccccccccccccC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEE
Q 019000 12 VKLGTQGLEVSKLGFGCMGLTG--MYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLA 89 (347)
Q Consensus 12 ~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~ 89 (347)
..|+ |++||+||||||++|+ .||...+.+++.++|+.|+++|||+||||+.||+|.+|+.||++++. .|+++||+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~ 86 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIV 86 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEE
Confidence 4463 8999999999999975 36655577889999999999999999999999999999999999975 69999999
Q ss_pred eeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHcCccceEecCC
Q 019000 90 SKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-----SVPIEDTIGELKMLVVEGKIKYIGLSE 164 (347)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~Ir~iGvS~ 164 (347)
||++...........+.+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++||||+||+||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn 166 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSN 166 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecC
Confidence 999764322111223568999999999999999999999999888421 235789999999999999999999999
Q ss_pred CCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCc
Q 019000 165 ASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGEN 244 (347)
Q Consensus 165 ~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (347)
|+.++++++.+..+++++|++||++++. ..+++++|+++||++++|+||+++..
T Consensus 167 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~------------------------- 220 (290)
T PRK10376 167 VTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTP------------------------- 220 (290)
T ss_pred CCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCCh-------------------------
Confidence 9999999999888999999999999976 35799999999999999999973210
Q ss_pred cchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019000 245 LGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPI 318 (347)
Q Consensus 245 ~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 318 (347)
...+.+.++|+++|+|++|+||+|+++++.++++|+|+++++||++|+++++++|++++++.|+++.+.
T Consensus 221 -----~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 221 -----LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 012478999999999999999999999877788999999999999999999999999999999987653
No 10
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3e-58 Score=411.33 Aligned_cols=260 Identities=31% Similarity=0.463 Sum_probs=233.2
Q ss_pred eeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC------CCC
Q 019000 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL------PRK 84 (347)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~------~R~ 84 (347)
+.+| ++|.++|.||||||+. +..++.+.++.|++.||||||||..|| +|..+|++|++. +|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 8999999999999973 678899999999999999999999999 999999999852 899
Q ss_pred CeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC----------------CCHHHHHHHH
Q 019000 85 KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS----------------VPIEDTIGEL 148 (347)
Q Consensus 85 ~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~----------------~~~~~~~~~l 148 (347)
++||+||++.. .+.++.++.++++||++||+||+|||++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~---------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPT---------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCcc---------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 99999999976 3578999999999999999999999999999543 3467899999
Q ss_pred HHHHHcCccceEecCCCCHHHHHHHhhc--CCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCC
Q 019000 149 KMLVVEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVE 226 (347)
Q Consensus 149 ~~l~~~G~Ir~iGvS~~~~~~l~~~~~~--~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~ 226 (347)
+++++.|++|+||||||+..+|+++++. .++.++|++++++.+ +.+++++|+++||.|.|||||+++-- +.
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~---- 217 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS---- 217 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc----
Confidence 9999999999999999999999999987 467899999999887 56899999999999999999997621 00
Q ss_pred CCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCH
Q 019000 227 SLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTK 306 (347)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~ 306 (347)
+ .-.-+.+.+||++||.|++|++|||.++++ ++|||.++|++||+||++.+++.||+
T Consensus 218 -----------~----------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 -----------D----------LLEDPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred -----------c----------cccCHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCCH
Confidence 0 001148999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcc
Q 019000 307 EDMKEILNFVPIEEV 321 (347)
Q Consensus 307 ~~~~~l~~~~~~~~~ 321 (347)
+|++.|+....+.+.
T Consensus 275 ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 275 EDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHhhcccccee
Confidence 999999988877654
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.6e-57 Score=413.51 Aligned_cols=247 Identities=27% Similarity=0.438 Sum_probs=221.5
Q ss_pred ccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCCCeEEEeeeeccc
Q 019000 19 LEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQLASKFGVVS 96 (347)
Q Consensus 19 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~~v~i~tK~~~~~ 96 (347)
++||+||||||++ +.+++.++++.|++.|||+||||+.|| +|..||++|++. +|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 3689999999976 346799999999999999999999999 799999999853 69999999998532
Q ss_pred CCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC--CCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 019000 97 MAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS--VPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAH 174 (347)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~ 174 (347)
..+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 3478999999999999999999999999999764 567899999999999999999999999999998887
Q ss_pred hc---CCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHH
Q 019000 175 AV---HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQI 251 (347)
Q Consensus 175 ~~---~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (347)
+. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~----------------------------- 189 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD----------------------------- 189 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-----------------------------
Confidence 64 3678999999999874 6899999999999999999998854321
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCC
Q 019000 252 YARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPIE 319 (347)
Q Consensus 252 ~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~ 319 (347)
+.+.++|+++|+|++|+||+|+++++ .+||+|+++++||++|+++++++||++++++|+++.++.
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNG 254 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCC
Confidence 26889999999999999999999997 579999999999999999999999999999999997653
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.6e-57 Score=418.96 Aligned_cols=276 Identities=37% Similarity=0.614 Sum_probs=232.7
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhc--CCCCCeEEEeeeecccCCCc
Q 019000 23 KLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQ--LPRKKIQLASKFGVVSMAPT 100 (347)
Q Consensus 23 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~v~i~tK~~~~~~~~~ 100 (347)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+|.||+.||++|++ .+|++++|+||+....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~---- 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG---- 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc----
Confidence 589999998653 4599999999999999999999999999999999999999998 4899999999992211
Q ss_pred cccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCccceEecCCCCHHHHHHH--hhcC
Q 019000 101 SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTIGELKMLVVEGKIKYIGLSEASPDTIRRA--HAVH 177 (347)
Q Consensus 101 ~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~--~~~~ 177 (347)
......+++.+++++++||+|||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 1234679999999999999999999999999999999888 899999999999999999999999999999999 5557
Q ss_pred CcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCC-CCCCCcccccCCCCCCCccchhHHHHHHHH
Q 019000 178 PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVE-SLPANSFLISHPRFTGENLGKNKQIYARVE 256 (347)
Q Consensus 178 ~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (347)
+++++|++||++++....+++++|+++||++++|+||++|+|+++.... ..+... .........+.+.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~ 222 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRA-----------SLRDAQELADALR 222 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTS-----------GSSTHGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCccccc-----------ccchhhhhhhhhh
Confidence 8999999999997777789999999999999999999999999873221 111100 0001345667999
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 019000 257 NLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFV 316 (347)
Q Consensus 257 ~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 316 (347)
++++++|+|++|+||+|+++++.+.+||+|+++++||++|+++++++||++++++|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.5e-56 Score=411.11 Aligned_cols=270 Identities=19% Similarity=0.248 Sum_probs=230.1
Q ss_pred CccccccccccccccCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEe
Q 019000 18 GLEVSKLGFGCMGLTGM-------YNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLAS 90 (347)
Q Consensus 18 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~t 90 (347)
+++||+||||||++|+. |+. ++.+++.++|+.|+++|||+||||+.|| .||..+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 343 5889999999999999999999999997 6999999999753346788999
Q ss_pred eeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC-CCH-HHHHHHHHHHHHcCccceEecCCCCHH
Q 019000 91 KFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPI-EDTIGELKMLVVEGKIKYIGLSEASPD 168 (347)
Q Consensus 91 K~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~-~~~-~~~~~~l~~l~~~G~Ir~iGvS~~~~~ 168 (347)
|.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+||+|||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 2368999999999999999999999999999763 333 678999999999999999999999999
Q ss_pred HHHHHhhcCCcceeeeeccccccchh-hhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccch
Q 019000 169 TIRRAHAVHPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGK 247 (347)
Q Consensus 169 ~l~~~~~~~~~~~vq~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (347)
++.++....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+ ..+..
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~-------------~~~~~ 212 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP-------------AQLKG 212 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc-------------cchhh
Confidence 99888877889999999999998653 469999999999999999999999975310 000 01112
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 019000 248 NKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFV 316 (347)
Q Consensus 248 ~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 316 (347)
....+..+.+++++.++|++|+||+|++++|.|+++|+|+++++||++|+++.+.+++++.+++|..-.
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 234566788888889999999999999999999999999999999999999999999998888876543
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=7.8e-55 Score=398.46 Aligned_cols=255 Identities=29% Similarity=0.418 Sum_probs=225.2
Q ss_pred eeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCCCeEE
Q 019000 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQL 88 (347)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~~v~i 88 (347)
+..| ++|+.||+||||||++ +.+++.++|+.|++.|||+||||+.|| +|+.+|++|+.. +|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 3567 8999999999999975 567899999999999999999999998 799999999863 5899999
Q ss_pred EeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCccceEecCCCCH
Q 019000 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV-PIEDTIGELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
+||++. .+++.+++++++||+|||+||||+|++|+|++.. +..++|++|++|+++|+||+||+|||++
T Consensus 74 ~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 142 (275)
T PRK11565 74 TTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQI 142 (275)
T ss_pred EEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCH
Confidence 999852 1567999999999999999999999999998753 4789999999999999999999999999
Q ss_pred HHHHHHhhcC--CcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCcc
Q 019000 168 DTIRRAHAVH--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENL 245 (347)
Q Consensus 168 ~~l~~~~~~~--~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (347)
+++++++... .+.++|++||++.+. .+++++|+++||++++|+||++|.- + .+.
T Consensus 143 ~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----------------~~~---- 198 (275)
T PRK11565 143 HHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----------------VFD---- 198 (275)
T ss_pred HHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----------------ccc----
Confidence 9999887643 467899999999873 6799999999999999999997620 0 000
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCCc
Q 019000 246 GKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPIEE 320 (347)
Q Consensus 246 ~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 320 (347)
.+.|.++|+++|+|++|+||+|+++++ .+||+|+++++|+++|+++++++|+++++++|+++....+
T Consensus 199 ------~~~l~~ia~~~g~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 199 ------QKVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred ------CHHHHHHHHHhCCCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 147899999999999999999999997 5699999999999999999999999999999999986654
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.2e-54 Score=366.96 Aligned_cols=285 Identities=29% Similarity=0.431 Sum_probs=252.8
Q ss_pred CCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC--CCCCe
Q 019000 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKI 86 (347)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~--~R~~v 86 (347)
|++.+|++.|+++|++.+|+|++.. |+ .+..++...|++|++.||++||-|+.||++++|.++|.+|+-. .|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999853 33 3668999999999999999999999999999999999999864 79999
Q ss_pred EEEeeeecccCCCc---cccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC
Q 019000 87 QLASKFGVVSMAPT---SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS 163 (347)
Q Consensus 87 ~i~tK~~~~~~~~~---~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS 163 (347)
.|.||||...+... -.+++.|.++|.+|+|+||+||+|||+|+++||+||+..+.+|+.+++..|.++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 99999998765431 225788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC--Ccceeeeeccccccc-hhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCC
Q 019000 164 EASPDTIRRAHAVH--PITAVQMEWSLLTRD-IEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRF 240 (347)
Q Consensus 164 ~~~~~~l~~~~~~~--~~~~vq~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (347)
||++.+++-+...- ++.++|+++|+++.. ..++.+++|+++.|.+++||||++|-+....
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 99999987776653 467899999999876 3467999999999999999999988432210
Q ss_pred CCCccchhHHHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019000 241 TGENLGKNKQIYARVENLAKRNK-CTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPI 318 (347)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g-~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 318 (347)
.......+.|..||.++| .|..+++++|++.+|.-..||+|+.|++++++.+++.+..||.++|=+|......
T Consensus 221 -----~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 -----DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred -----cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 122456678999999999 7999999999999999999999999999999999999999999999999887643
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.1e-51 Score=370.84 Aligned_cols=272 Identities=28% Similarity=0.404 Sum_probs=242.9
Q ss_pred CCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEE
Q 019000 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQL 88 (347)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i 88 (347)
|.||++|+||.++|.+|||||++...|+..+|.+.+.++|++|+++|||+||||..|..|.||..+|++|++..|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 88999999999999999999999876666679999999999999999999999999988899999999999989999999
Q ss_pred EeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHH-----HHHHHHHHHHHcCccceEecC
Q 019000 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIE-----DTIGELKMLVVEGKIKYIGLS 163 (347)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~-----~~~~~l~~l~~~G~Ir~iGvS 163 (347)
+||+.... --+++++++-++++|++||+||+|+|+||..+. ..++ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 99997432 237899999999999999999999999999976 3332 368999999999999999999
Q ss_pred CC-CHHHHHHHhhcCCcceeeeeccccccchh--hhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCC
Q 019000 164 EA-SPDTIRRAHAVHPITAVQMEWSLLTRDIE--EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRF 240 (347)
Q Consensus 164 ~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (347)
.| +.+.+.++++..++|++|++||.+++... .+.+++|.++|++|+.++|+.+|-|..+. |
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v-----P----------- 215 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV-----P----------- 215 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC-----C-----------
Confidence 99 57889999999999999999999998644 38999999999999999999998766431 1
Q ss_pred CCCccchhHHHHHHHHHHHHhcC--CCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCC--C-CCHHHHHHHHhh
Q 019000 241 TGENLGKNKQIYARVENLAKRNK--CTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMM--K-LTKEDMKEILNF 315 (347)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g--~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~--~-L~~~~~~~l~~~ 315 (347)
+++.+|.++++ .||+.+|+||+++||.|.++++|+++++|++||++..+. + ||++|+..|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 37888888876 689999999999999999999999999999999998863 3 999998888776
Q ss_pred CC
Q 019000 316 VP 317 (347)
Q Consensus 316 ~~ 317 (347)
.+
T Consensus 284 ~~ 285 (391)
T COG1453 284 EE 285 (391)
T ss_pred HH
Confidence 54
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=8.2e-51 Score=350.89 Aligned_cols=283 Identities=25% Similarity=0.399 Sum_probs=244.0
Q ss_pred CCCCeeecCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCe
Q 019000 7 IQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKI 86 (347)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v 86 (347)
-+|+||.||+||++||+||||+..++..|+.. +.++....|..|+++|||+||||+.||.++||..+|.++++.+|+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhe
Confidence 35999999999999999999999999888874 78888888888999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCccceEec
Q 019000 87 QLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS----VPIEDTIGELKMLVVEGKIKYIGL 162 (347)
Q Consensus 87 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~Ir~iGv 162 (347)
||+||++...-+. ....+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||||+||+
T Consensus 99 yIaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 99 YIATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 9999998653321 22368899999999999999999999999999987644 346799999999999999999999
Q ss_pred CCCCHHHHHHHhhc--CCcceee--eeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCC
Q 019000 163 SEASPDTIRRAHAV--HPITAVQ--MEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHP 238 (347)
Q Consensus 163 S~~~~~~l~~~~~~--~~~~~vq--~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~ 238 (347)
|.++.+.+.++.+. +.++++. ..|++.+.. .-..+++.+..|++|+.-++++.|+|+...++...|.
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa-------- 248 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA-------- 248 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC--------
Confidence 99999999999876 3467776 566665543 2567888889999999999999999998744333322
Q ss_pred CCCCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCCCCH
Q 019000 239 RFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTK 306 (347)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~L~~ 306 (347)
-.+..+...+-.++|++.|+..+.+|+.|.++.++++++++|+++.++|+.|+++....||.
T Consensus 249 ------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 249 ------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred ------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 13455666788899999999999999999999999999999999999999999987667777
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.96 E-value=2e-05 Score=68.47 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCC--cceeeeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 141 IEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHP--ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 141 ~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~--~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
+.+.|+.|++++.+|+|..||+|.|++.+|+++++... +..+|+...-.+.-+ .+|..||..+.|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 45789999999999999999999999999999998754 456777666555433 689999999999998864
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.03 E-value=2.6 Score=39.32 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCC--chHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAH--ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g--~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~ 117 (347)
+.++..+.++.+.+.|++.|+.-- |.. ...+.+- ++++.-. ++-|.-++.. .++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~-~lr~~~g-~~~l~vD~n~----------~~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIR-AIREAAP-DARLRVDANQ----------GWTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHH-HHHHhCC-CCeEEEeCCC----------CcCHHHH-HHHHH
Confidence 567777888899999999998643 211 1122332 3333222 5556555532 2344432 23334
Q ss_pred HHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhh
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEE 195 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~ 195 (347)
.|++++ +.++-.|-+. +-++.+.+|++...|. +.|=+-++.+.+.++++...++++|+..+.+-. ..-.
T Consensus 199 ~l~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 455554 4444555332 2356677788877666 445566789999999998899999998665421 1236
Q ss_pred hHHHHHHHhCCcEEecccCccc
Q 019000 196 EIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 196 ~l~~~~~~~gi~v~a~spl~~G 217 (347)
++..+|+++||.++..+-+..+
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhH
Confidence 8999999999999987555433
No 20
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.46 E-value=21 Score=33.36 Aligned_cols=133 Identities=12% Similarity=-0.005 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEe---Ccc-----CCCCC----chHHHHHHHHhcC---CCCCeEEEeeeecccCCCccccC
Q 019000 40 SEEDGISIIKHAFNKGITFFD---TAD-----VYGAH----ANEVLVGKVLKQL---PRKKIQLASKFGVVSMAPTSVIV 104 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D---TA~-----~Yg~g----~sE~~lG~~l~~~---~R~~v~i~tK~~~~~~~~~~~~~ 104 (347)
+.++..+....+.+.|+..+| -.+ .||.| ..-+.+.+.++.. -..++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 677777788888899999999 222 36655 3345566666542 1124778899865431
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHH--H-HHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcc
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIE--D-TIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPIT 180 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~--~-~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~ 180 (347)
+.+. ...+-+.|+..| +|.+-+|.-....... . -|+...++++.-.|--||.... +++..+++++....|
T Consensus 146 --~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 235555566777 5667788643322111 1 3677888888777888888775 788888888877788
Q ss_pred eeeee
Q 019000 181 AVQME 185 (347)
Q Consensus 181 ~vq~~ 185 (347)
.+++-
T Consensus 220 gVmiG 224 (312)
T PRK10550 220 AVMIG 224 (312)
T ss_pred EEEEc
Confidence 87774
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=87.20 E-value=26 Score=33.08 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCC------CchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGA------HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~------g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (347)
+.++..+.++.+.+.|++.|-.--..+. -...+.+ +++++.-.+++.|...... .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG----------RWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC----------CCCHHHHHH
Confidence 4667778888888999998864322111 0112222 2333322345555554421 235444332
Q ss_pred HHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-
Q 019000 114 CCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR- 191 (347)
Q Consensus 114 ~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~- 191 (347)
-+++|. ..++.+++.|-+. +.++.+..+++.-.|. ..|=|.++.+.+.++++...++++|+.....-.
T Consensus 208 ----~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 208 ----LARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred ----HHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 233332 2345566766443 2456677787775555 444556789999999988888999987665431
Q ss_pred chhhhHHHHHHHhCCcEEecc
Q 019000 192 DIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 192 ~~~~~l~~~~~~~gi~v~a~s 212 (347)
..-.++...|+++|+.++..+
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccC
Confidence 123689999999999987765
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=86.13 E-value=25 Score=31.65 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHH--HHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLV--GKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~l--G~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~ 117 (347)
+.++..+.++.+.+.|++.|-.-- |. ..+..+ =+++++.-.+++.|.-.... .++.+...+-+ +
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~-~~~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~ 150 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GR-DPARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-R 150 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CC-CHHHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-H
Confidence 456677788888999999887532 21 122222 12334322334444333211 23544433332 3
Q ss_pred HHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhh
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEE 195 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~ 195 (347)
.|+.++ +.++..|-+.. .++.+.++++.-.+. +.|=|-++.+.+.++++...++++|+..+..-. ..-.
T Consensus 151 ~l~~~~-----i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~ 221 (265)
T cd03315 151 ALEDLG-----LDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQ 221 (265)
T ss_pred HHHhcC-----CCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHH
Confidence 444444 44556664332 356677777776555 445566788999999988889999998766432 1236
Q ss_pred hHHHHHHHhCCcEEecccCccc
Q 019000 196 EIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 196 ~l~~~~~~~gi~v~a~spl~~G 217 (347)
++...|+++|+.++..+.+.+|
T Consensus 222 ~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 222 RVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHcCCcEEecCccchH
Confidence 8999999999999987666544
No 23
>PRK07945 hypothetical protein; Provisional
Probab=86.07 E-value=16 Score=34.54 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCCC-----CCchHHHHHHHHhcC-----CCCCeEEEeeeecccCCCccccCCCCHHHH
Q 019000 42 EDGISIIKHAFNKGITFFDTADVYG-----AHANEVLVGKVLKQL-----PRKKIQLASKFGVVSMAPTSVIVKGTPEYV 111 (347)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg-----~g~sE~~lG~~l~~~-----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i 111 (347)
....+++..|.+.|+..+=.++|.. .+.+...+-+.++.. .-.+ |--+.|....-. .+.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~--I~Il~GiE~d~~----~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP--FRILTGIEVDIL----DDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEeEeccc----CCCCcchh
Confidence 3467999999999999886665532 122233333333221 1112 333333332100 01122222
Q ss_pred HHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCC---------------CCHHHHHHHhhc
Q 019000 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE---------------ASPDTIRRAHAV 176 (347)
Q Consensus 112 ~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~---------------~~~~~l~~~~~~ 176 (347)
.+ .|+. .||+ +.-+|+... .+.++..+.|.++.+.+.+.-||=-. +..+.+.+++..
T Consensus 185 ~~----~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 PE----LLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred HH----HHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 22 3333 5676 778898643 23456677888888888877777321 111222222222
Q ss_pred CCcceeeeeccccccchhhhHHHHHHHhCCcEE
Q 019000 177 HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIV 209 (347)
Q Consensus 177 ~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~ 209 (347)
.. .++.+.-+.+...+...++..|++.|+.++
T Consensus 257 ~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 257 HG-TAVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred hC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 22 122222233223344578888888887653
No 24
>PRK08392 hypothetical protein; Provisional
Probab=82.69 E-value=25 Score=30.67 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhc---C-CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 43 DGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQ---L-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~---~-~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
...++++.|.+.|++.+=.+++.-.. ....+-..+++ . .+..+ .-..|.... ..++. ....++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i--~il~GiE~~--------~~~~~-~~~~~~~ 82 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEI--VVLAGIEAN--------ITPNG-VDITDDF 82 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCc--eEEEeEEee--------ecCCc-chhHHHH
Confidence 36789999999999999666654210 11112222221 1 11222 223333221 01111 1223334
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCC-------C-CHHHHHHHhhcCCcceeeeeccccc
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE-------A-SPDTIRRAHAVHPITAVQMEWSLLT 190 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~-------~-~~~~l~~~~~~~~~~~vq~~~n~~~ 190 (347)
+++ .||+ +.-+|........++-++.+.++.+.|.+.-+|=-. . ..+.++++++...=.-+.++.|-..
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~~ 159 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSRY 159 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCCC
Confidence 443 4666 677884332233456678888888888766555321 1 1123333332210001223333222
Q ss_pred cchhhhHHHHHHHhCCcEEe
Q 019000 191 RDIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a 210 (347)
+.+...+++.|++.|+.++.
T Consensus 160 ~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 160 RVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred CCCCHHHHHHHHHcCCEEEE
Confidence 22345789999999976543
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.48 E-value=10 Score=33.96 Aligned_cols=106 Identities=21% Similarity=0.162 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-ccceEecCCCCHHHHHHHhhcCCcceee
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~Ir~iGvS~~~~~~l~~~~~~~~~~~vq 183 (347)
.++.+...+-++ .|..+|+++|.+-..-.+......++.++.++.+++.+ .++...++.-..+.++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 456665555444 58889999988876654422111245678888888888 5776677665566676666653 56676
Q ss_pred eeccccc--------cc------hhhhHHHHHHHhCCcEEecc
Q 019000 184 MEWSLLT--------RD------IEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 184 ~~~n~~~--------~~------~~~~l~~~~~~~gi~v~a~s 212 (347)
+.+..-+ +. .-.+.+++++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6665441 11 12568888999998876643
No 26
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=80.16 E-value=3.9 Score=38.92 Aligned_cols=211 Identities=17% Similarity=0.138 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHH---HHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLV---GKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~l---G~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le 116 (347)
+.++..+.|+.|.+.|+..+=|+=+...+..+..+ .+.++......+.|+.=+.+..-. ....+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 57888999999999999999999776543223222 222222133444444443322100 000111111
Q ss_pred HHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCC-cceeeeeccccccch--
Q 019000 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQMEWSLLTRDI-- 193 (347)
Q Consensus 117 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~-~~~vq~~~n~~~~~~-- 193 (347)
..++.||++.|=+ |..... +.+.+|-++|.--.+=.|+.+.+.+..+++... ++-+..-+|.+.+..
T Consensus 83 ~~~~~lGi~~lRl------D~Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDGLRL------DYGFSG----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SEEEE------SSS-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCEEEE------CCCCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 1344555443221 222222 333444445766667778888888888887643 444444445444421
Q ss_pred -----hhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCHHH
Q 019000 194 -----EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQ 268 (347)
Q Consensus 194 -----~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 268 (347)
..+.-.+.++.||.+.|+-|-..+ ..|. -.+.+|. .++|.--+..
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AFI~g~~~-~rGP-l~~GLPT----------------------------lE~hR~~~p~ 202 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAFIPGDEN-KRGP-LYEGLPT----------------------------LEKHRNLPPY 202 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE--SSS--BTT-T-S--BS----------------------------BGGGTTS-HH
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCc-ccCC-ccCCCCc----------------------------cHHHcCCCHH
Confidence 145566778999999998775421 1111 0000110 0122222345
Q ss_pred HHHHHHHhCCCCcEEecCCC--CHHHHHHHHhc
Q 019000 269 LSLAWLLRQGDDIVPIPGTT--KIKNLDENIGS 299 (347)
Q Consensus 269 ~al~w~l~~~~v~~~i~g~~--~~~~l~enl~a 299 (347)
+|...+...+.|.-|++|-. +.+.+++....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 57778888888899999965 55556555554
No 27
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.91 E-value=10 Score=36.45 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhH
Q 019000 42 EDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKR 121 (347)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~r 121 (347)
.....+++.|++.|++++|||.+.- .+..+.+.. .+..+.+..-+|..++ .+--.....+++-.+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dPG--------i~nv~a~~a~~~~~~- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDPG--------ITNVLAAYAAKELFD- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCcc--------hHHHHHHHHHHHhhc-
Confidence 3455899999999999999998665 333333332 3455666666665432 222222222222222
Q ss_pred hCCCcccEEEecCCCCC
Q 019000 122 LGVDYIDLYYQHRVDPS 138 (347)
Q Consensus 122 L~~d~iDl~~lH~~~~~ 138 (347)
.+++||+|..+-|+..
T Consensus 144 -~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 -EIESIDIYVGGLGEHG 159 (389)
T ss_pred -cccEEEEEEecCCCCC
Confidence 5899999999998665
No 28
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=79.91 E-value=5.6 Score=34.74 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhhcCCcceeeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~~ 185 (347)
+.+.++. +..+|.||+-+.+........+.+.+ ..+.+.. .+.++.+||. |-+++.+.++++...++++|++
T Consensus 10 ~~eda~~-----~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 10 TIKDVTA-----ASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 4555544 45699999999754433333444333 3333322 3568889996 7789999999998999999997
Q ss_pred cc
Q 019000 186 WS 187 (347)
Q Consensus 186 ~n 187 (347)
-+
T Consensus 83 G~ 84 (207)
T PRK13958 83 GT 84 (207)
T ss_pred CC
Confidence 53
No 29
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.54 E-value=30 Score=31.28 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEE-ecCCCCC-CCHHH----HHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCc
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYY-QHRVDPS-VPIED----TIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPI 179 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~-lH~~~~~-~~~~~----~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~ 179 (347)
.+.+.+.+..++.+ +-|-|+||+-. -.+|... .+.++ +...++.+++.-.+- |.+-+++++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 35555555544443 55889999853 3344432 23333 333456666653343 7888999999999998752
Q ss_pred ceeeeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 180 TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 180 ~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
+ +-+..+....+ .++++.++++|..++.+.
T Consensus 98 ~-iINdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 98 D-IINDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred C-EEEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 3 22334444321 578999999999999953
No 30
>PRK08609 hypothetical protein; Provisional
Probab=79.29 E-value=23 Score=36.03 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCeEeCccCCC-----CCchHHHHHHHHhc------CCCC-CeEEEeeeecccCCCccccCCCCHHHH
Q 019000 44 GISIIKHAFNKGITFFDTADVYG-----AHANEVLVGKVLKQ------LPRK-KIQLASKFGVVSMAPTSVIVKGTPEYV 111 (347)
Q Consensus 44 ~~~~l~~A~~~Gin~~DTA~~Yg-----~g~sE~~lG~~l~~------~~R~-~v~i~tK~~~~~~~~~~~~~~~~~~~i 111 (347)
..++++.|.+.|+.+|=.++|+. .|.+...+-..++. ...+ +|++..-+.+.. +..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------------~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------------DGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------------Ccc
Confidence 55699999999999998887752 23344333333221 1111 233333333221 111
Q ss_pred HHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCC---------CC--HHHHHHHhhcCCcc
Q 019000 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE---------AS--PDTIRRAHAVHPIT 180 (347)
Q Consensus 112 ~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~---------~~--~~~l~~~~~~~~~~ 180 (347)
..-.+..|+. .||+ +.-+|++. ..+.++.++.+.++.+.|.+--||=-. +. .+.+.+++.... .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2222234444 5776 77888753 335677888899988888877665332 11 122222222122 2
Q ss_pred eeeeeccccccchhhhHHHHHHHhCCcEE
Q 019000 181 AVQMEWSLLTRDIEEEIIPLCRELGIGIV 209 (347)
Q Consensus 181 ~vq~~~n~~~~~~~~~l~~~~~~~gi~v~ 209 (347)
++|+.-+.+.......++..|.+.|+.+.
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 45555554433334678889999988653
No 31
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.99 E-value=13 Score=32.79 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=61.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
.++.++-.|-+.. -++.+.+|.+...+. +.+=|.++.+.+.++++...++++|+..+..-. ..-.++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5666777765433 356677777777665 445556778888888888888999987766432 1126789999999
Q ss_pred CCcEEecccCccc
Q 019000 205 GIGIVPYSPLGRG 217 (347)
Q Consensus 205 gi~v~a~spl~~G 217 (347)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776544
No 32
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=77.93 E-value=43 Score=30.20 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEE-ecCCCCC-CCH----HHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCc
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYY-QHRVDPS-VPI----EDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPI 179 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~-lH~~~~~-~~~----~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~ 179 (347)
.+.+.+.+..++.+ .-|-|.||+-- -.+|+.. .+. +.....++.+++.-.+ -|.+-+++++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 35666666655443 66899999863 3334321 112 2345566666655233 38888999999999998872
Q ss_pred ceeeeeccccccchhhhHHHHHHHhCCcEEeccc
Q 019000 180 TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 180 ~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (347)
.+-+..+....+ .++++.++++|..++.+..
T Consensus 98 -~iINdis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 -DIINDVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -CEEEeCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 233333443321 5789999999999988753
No 33
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=77.18 E-value=64 Score=30.14 Aligned_cols=153 Identities=16% Similarity=0.074 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL 119 (347)
+.++..+.+..+.+.|++.|=.-- +. ..+..+=+++++.- .++ ++..... ..++.+.+. . +
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~----~l~vDaN------~~~~~~~a~-~----~ 192 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQI----PLVIDAN------ESYDLQDFP-R----L 192 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCC----cEEEECC------CCCCHHHHH-H----H
Confidence 556677788888899999874221 11 12222223344321 222 2222111 134555432 1 3
Q ss_pred hHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhH
Q 019000 120 KRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEI 197 (347)
Q Consensus 120 ~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l 197 (347)
++|. ..++.++-.|-. .+.++.+.+++++-.+. +.|=|.++...+..+++...++++|+..+.+-. ..-.++
T Consensus 193 ~~l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 193 KELD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred HHHh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHH
Confidence 3333 235666666643 23457788888876655 667788899999999998889999987665432 123689
Q ss_pred HHHHHHhCCcEEecccCccc
Q 019000 198 IPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G 217 (347)
...|+.+||.++..+.+..|
T Consensus 267 ~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHcCCeEEEcceEccc
Confidence 99999999999987666544
No 34
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=77.18 E-value=57 Score=29.57 Aligned_cols=136 Identities=12% Similarity=0.136 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeec
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEW 186 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~ 186 (347)
+.+.+.+..++. ..-|-|+||+-.= +......+.....++.+++.-.+ -|.+-+++++.++++++..+=..+-+..
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 455555554443 3668999998642 11112233445555555544222 3788899999999999872211223333
Q ss_pred cccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCH
Q 019000 187 SLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTP 266 (347)
Q Consensus 187 n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 266 (347)
|..... ...+++.++++|+.++...--..|. +. .........+.+.+.+.++|+++
T Consensus 99 s~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~------P~-----------------t~~~~~~~l~~~v~~a~~~GI~~ 154 (261)
T PRK07535 99 SAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI------PK-----------------DAEDRLAVAKELVEKADEYGIPP 154 (261)
T ss_pred CCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC------CC-----------------CHHHHHHHHHHHHHHHHHcCCCH
Confidence 332211 3478999999999998764222231 00 01123445556666777888876
Q ss_pred HHHH
Q 019000 267 AQLS 270 (347)
Q Consensus 267 ~q~a 270 (347)
.++.
T Consensus 155 ~~Ii 158 (261)
T PRK07535 155 EDIY 158 (261)
T ss_pred hHEE
Confidence 6643
No 35
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=76.93 E-value=38 Score=29.17 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
|.+++.++++.+++.|++..|.- +..+..++... .+.+++++-= ....+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 78899999999999998766632 23333343321 2333332111 12344555555
Q ss_pred HHHHhHhCCC----cccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhhcCCcceeeeeccccc
Q 019000 116 EASLKRLGVD----YIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLT 190 (347)
Q Consensus 116 e~SL~rL~~d----~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~ 190 (347)
..-...+..+ .---+++-.+..+.+.-...=...-|+..|. +.++|. +.+.+.+.+.+....++++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccccc
Confidence 5554555421 1112333333333322223333334666775 677885 447777888888888898888876554
Q ss_pred cch-hhhHHHHHHHhCC
Q 019000 191 RDI-EEEIIPLCRELGI 206 (347)
Q Consensus 191 ~~~-~~~l~~~~~~~gi 206 (347)
... -.++++.+++.|.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 432 2678888888864
No 36
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=75.97 E-value=13 Score=35.44 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=60.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
+++.++-.|-+. +-++.+.+|++...+. +.|=|-++...+..++....++++|+.....-. ..-.++.+.|+++
T Consensus 189 ~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~ 264 (361)
T cd03322 189 YRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLY 264 (361)
T ss_pred cCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 355555555332 2367788888887765 777788899999999998889999988765431 1236899999999
Q ss_pred CCcEEecccC
Q 019000 205 GIGIVPYSPL 214 (347)
Q Consensus 205 gi~v~a~spl 214 (347)
|+.++.++..
T Consensus 265 gi~~~~h~~~ 274 (361)
T cd03322 265 GVRTGWHGPT 274 (361)
T ss_pred CCeeeccCCC
Confidence 9999876543
No 37
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=75.35 E-value=33 Score=30.97 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=41.6
Q ss_pred HHHHHHHcCccceEec-CCCCHHHHHHHhhcCCcce--eeeeccccccchhhhHHHHHHHhCCcEEecccC
Q 019000 147 ELKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITA--VQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 147 ~l~~l~~~G~Ir~iGv-S~~~~~~l~~~~~~~~~~~--vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 214 (347)
.|++..++|+. -+|+ .......+.+++....+|+ +-.+..+++...-..++..|+..|+..+..-|-
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 35555566874 3554 2232234445455444554 555778877765567888899999988887654
No 38
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=73.84 E-value=21 Score=31.22 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEecC-CCCHHHHHHHhhcCCcceeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLS-EASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~ 184 (347)
+++++.. ...+|.||+-+.+.-......+. +..+++.+.-. ++.+||. |.+.+.+.++++...++.+|+
T Consensus 11 ~~eda~~-----a~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQl 81 (208)
T COG0135 11 RLEDAKA-----AAKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQL 81 (208)
T ss_pred CHHHHHH-----HHHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 4555544 34689999887666532233333 33344444433 8899997 568899999999999999999
Q ss_pred eccccccchhhhHHHHHHHhC-CcEE
Q 019000 185 EWSLLTRDIEEEIIPLCRELG-IGIV 209 (347)
Q Consensus 185 ~~n~~~~~~~~~l~~~~~~~g-i~v~ 209 (347)
+-.. ..+.++..++.. +.|+
T Consensus 82 HG~e-----~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 82 HGDE-----DPEYIDQLKEELGVPVI 102 (208)
T ss_pred CCCC-----CHHHHHHHHhhcCCceE
Confidence 7552 345556666554 5554
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=73.76 E-value=9.2 Score=33.44 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhhcCCcceeeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~~ 185 (347)
+.+.++. +..+|.|++-+.+........+.+. .+.+.... .+.+..+||. +-+++.+.++++...++++|++
T Consensus 12 ~~eda~~-----~~~~Gad~iGfI~~~~S~R~V~~~~-a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 84 (210)
T PRK01222 12 TPEDAEA-----AAELGADAIGFVFYPKSPRYVSPEQ-AAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLH 84 (210)
T ss_pred cHHHHHH-----HHHcCCCEEEEccCCCCCCcCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 4555554 3468999999874333222233333 33332222 3568899997 5689999999999999999997
Q ss_pred cc
Q 019000 186 WS 187 (347)
Q Consensus 186 ~n 187 (347)
-+
T Consensus 85 g~ 86 (210)
T PRK01222 85 GD 86 (210)
T ss_pred CC
Confidence 54
No 40
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=73.43 E-value=1.8 Score=40.70 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=38.9
Q ss_pred cCccceEecCCCCHHHHHHHhhcCC-cceeeeeccccccchhhhHHHHHHHhCCc
Q 019000 154 EGKIKYIGLSEASPDTIRRAHAVHP-ITAVQMEWSLLTRDIEEEIIPLCRELGIG 207 (347)
Q Consensus 154 ~G~Ir~iGvS~~~~~~l~~~~~~~~-~~~vq~~~n~~~~~~~~~l~~~~~~~gi~ 207 (347)
-|+|||+||--++++++.++..... -+..+.+..++....+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 5999999999999999988876532 23444455555444446788888888876
No 41
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=73.07 E-value=32 Score=33.03 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcCCCe-EeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccC-CCccccCCCCHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITF-FDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSM-APTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~-~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~-~~~~~~~~~~~~~i~~~le~ 117 (347)
+.+.-.+=++.|++.|-.. .|-+. .| .-..+.+.+-+. ..+-|-|=-=+... .......+.+.+.+.+.+|+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~~--s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~ 148 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILDA--VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEK 148 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHc--CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 5555566689999999864 45443 33 333344443221 11111111000000 00001235688888888887
Q ss_pred HHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhhH
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEI 197 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l 197 (347)
..+ |-+|.+-+|.- -+.+.++.++++|+ ..|+-+-.-.-+...+... -.=|++... ..++
T Consensus 149 qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------~~ENPlye~-fD~l 208 (423)
T TIGR00190 149 QAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------HKENPLYKN-FDYI 208 (423)
T ss_pred HHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------CCcCchHHH-HHHH
Confidence 765 56889999984 25678889999995 5566555444444433322 123555543 3679
Q ss_pred HHHHHHhCCcEE
Q 019000 198 IPLCRELGIGIV 209 (347)
Q Consensus 198 ~~~~~~~gi~v~ 209 (347)
++.|++++|.+.
T Consensus 209 LeI~~~yDVtlS 220 (423)
T TIGR00190 209 LEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHhCeeee
Confidence 999999998874
No 42
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=72.67 E-value=78 Score=29.01 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---ccCCCC-----CchHHHHHHHHhcCCCC-CeEEEeeeecccCCCccccCCCCHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDT---ADVYGA-----HANEVLVGKVLKQLPRK-KIQLASKFGVVSMAPTSVIVKGTPEY 110 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~-----g~sE~~lG~~l~~~~R~-~v~i~tK~~~~~~~~~~~~~~~~~~~ 110 (347)
+.++..+..+.+.+.|+..||- ++.+.. |.+.+.+-+.++...+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV------------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc------------hh
Confidence 5678888888999999999885 222111 24667777777654222 577888875331 12
Q ss_pred HHHHHHHHHhHhCCCcccEEE------ecCCC--C-----------CCCHHHHHHHHHHHHHcCccceEecCCC-CHHHH
Q 019000 111 VRSCCEASLKRLGVDYIDLYY------QHRVD--P-----------SVPIEDTIGELKMLVVEGKIKYIGLSEA-SPDTI 170 (347)
Q Consensus 111 i~~~le~SL~rL~~d~iDl~~------lH~~~--~-----------~~~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l 170 (347)
+ ..+-+.++..|.|.|++.- +|.-. + .....-.++.+.++++.=.|--||+... +++.+
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 2333457778887776631 12100 0 0001125677777777656888998886 78889
Q ss_pred HHHhhcCCcceeeeeccccc-c----chhhhHHHHHHHhCC
Q 019000 171 RRAHAVHPITAVQMEWSLLT-R----DIEEEIIPLCRELGI 206 (347)
Q Consensus 171 ~~~~~~~~~~~vq~~~n~~~-~----~~~~~l~~~~~~~gi 206 (347)
.+++... .+.+|+-=-++. + ....++.++.+++|.
T Consensus 247 ~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888755 688887433332 1 122566777777764
No 43
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=71.39 E-value=16 Score=34.75 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHhCCcEEecccCc
Q 019000 144 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 144 ~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~ 215 (347)
.++.+.+|+++..|. +.|=|-++.+.+.++++...++++|+.....-. ....++...|+++|+.++..+-+.
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLE 300 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcch
Confidence 467777888776665 566667788899999888888888887655421 123688999999999988654443
No 44
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=70.73 E-value=60 Score=32.53 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=72.3
Q ss_pred hHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCH----
Q 019000 70 NEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI---- 141 (347)
Q Consensus 70 sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~---- 141 (347)
+++.|-+++++. +.+-++|.|-|- ++-|-..++...+.++.+.++++.++.+......
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 677777777653 333355555552 2334444455555566556899999988765432
Q ss_pred HHHHHHHHH-H----------HHcCccceEecCCC------CHHHHHHHhhcCCcceeee-e---------------ccc
Q 019000 142 EDTIGELKM-L----------VVEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQM-E---------------WSL 188 (347)
Q Consensus 142 ~~~~~~l~~-l----------~~~G~Ir~iGvS~~------~~~~l~~~~~~~~~~~vq~-~---------------~n~ 188 (347)
+.+++.+-+ + .+.+.|--||.++. +...++++++...+.++.+ + +|+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NI 214 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNI 214 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEE
Confidence 223332222 1 12456888998762 4566777777665555433 2 222
Q ss_pred cc-cchhhhHHHHH-HHhCCcEEecccCc
Q 019000 189 LT-RDIEEEIIPLC-RELGIGIVPYSPLG 215 (347)
Q Consensus 189 ~~-~~~~~~l~~~~-~~~gi~v~a~spl~ 215 (347)
.. +.....+.++. ++.|+.++...|++
T Consensus 215 v~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 215 CPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred EechHHHHHHHHHHHHHhCCCcccccccC
Confidence 21 11112234444 34499988777775
No 45
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=70.26 E-value=23 Score=30.46 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHH----------
Q 019000 46 SIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC---------- 115 (347)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l---------- 115 (347)
++|..-++-|-+.+|-.-..| .+-+.|++. + ++. =.| ...+++.+.+++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~-k-~v~---g~G----------vEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE-K-QVD---GYG----------VEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHHh-c-CCe---EEE----------EecCHHHHHHHHHcCCCEEECC
Confidence 455666777888888543333 233555541 1 110 011 133555566554
Q ss_pred -HHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHh--hcCCcceeeeeccccccc
Q 019000 116 -EASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAH--AVHPITAVQMEWSLLTRD 192 (347)
Q Consensus 116 -e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~--~~~~~~~vq~~~n~~~~~ 192 (347)
++.|..+.-+..|.+.+..-- .......+.|+++.+-|+-.-|++.||.-+....-+ .-..+..-.++|+.++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 444555555555555554321 112234455777888898888999999766554332 333456678888888753
Q ss_pred -h----hhhHHHHHHHhCCcEEecccCccc
Q 019000 193 -I----EEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 193 -~----~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
. -.+.-++|++.||.|.-..++..+
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 1 278999999999999999888765
No 46
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=69.64 E-value=16 Score=34.86 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHhCCcEEecccCccc
Q 019000 144 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 144 ~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
.++.+.+|++...+. +.|=|-++...+.+++....++++|+.....-. ..-..+...|+.+|+.++..+.+.++
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 366777787776665 677788889899899888888999887665322 11367999999999998876554433
No 47
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=69.61 E-value=99 Score=28.96 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=52.6
Q ss_pred HHhHhCCCcccEEEecC-CCC-CCCHHHHHHHHHHHHHcCccc-eEecCCC---CHHHHHHHhhcCC-cceeeeeccccc
Q 019000 118 SLKRLGVDYIDLYYQHR-VDP-SVPIEDTIGELKMLVVEGKIK-YIGLSEA---SPDTIRRAHAVHP-ITAVQMEWSLLT 190 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~-~~~-~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~---~~~~l~~~~~~~~-~~~vq~~~n~~~ 190 (347)
.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+= .|..|.. +++.++++++... -..+-+..|
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat--- 160 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE--- 160 (319)
T ss_pred HHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC---
Confidence 34588989998754332 221 122333444444443322222 2555532 7888888877633 112222222
Q ss_pred cchhhhHHHHHHHhCCcEEecccC
Q 019000 191 RDIEEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a~spl 214 (347)
..--..+.+.|+++|..|++.+|.
T Consensus 161 ~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 211367999999999999998764
No 48
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=69.22 E-value=1.2e+02 Score=29.69 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=57.1
Q ss_pred CccCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC-CcccEEEecCC
Q 019000 61 TADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV-DYIDLYYQHRV 135 (347)
Q Consensus 61 TA~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~-d~iDl~~lH~~ 135 (347)
..-.|| .|+.|-+++++. +.+=++|.|-+-... --+++..-+++.-++... ..+.++.++.|
T Consensus 63 ~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 63 DAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTP 129 (435)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCC
Confidence 446777 577888888663 334466666654322 112233333322222211 14789999988
Q ss_pred CCCCC----HHHHHHHHHH-HH-------HcCccceEe-cCCC-C-HHHHHHHhhcCCcceee
Q 019000 136 DPSVP----IEDTIGELKM-LV-------VEGKIKYIG-LSEA-S-PDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 136 ~~~~~----~~~~~~~l~~-l~-------~~G~Ir~iG-vS~~-~-~~~l~~~~~~~~~~~vq 183 (347)
..... .+.++++|-+ +. +.+.|-=|| ..+. + .++++++++...+.++.
T Consensus 130 gf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 130 SFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 65433 2334444432 22 233465665 2222 3 67888888876666553
No 49
>PLN02389 biotin synthase
Probab=69.17 E-value=1.1e+02 Score=29.55 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccC-CCC-Cc--hHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADV-YGA-HA--NEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSC 114 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~-Yg~-g~--sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (347)
.+.++..+.++.+.+.|++.|--... .|. +. .-..+-+.++..+...+.|....|.. +.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CHHHH---
Confidence 58889999999999999998743211 111 11 11344455554322234444333321 33333
Q ss_pred HHHHHhHhCCCcccEEEecC-------CCCCCCHHHHHHHHHHHHHcCc
Q 019000 115 CEASLKRLGVDYIDLYYQHR-------VDPSVPIEDTIGELKMLVVEGK 156 (347)
Q Consensus 115 le~SL~rL~~d~iDl~~lH~-------~~~~~~~~~~~~~l~~l~~~G~ 156 (347)
+.|+..|+|++-+- +.. .-....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 23555677664331 111 0112357888999999999984
No 50
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=69.07 E-value=37 Score=32.86 Aligned_cols=84 Identities=8% Similarity=0.052 Sum_probs=60.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
.++.++-.|-+. +.++.+.+|++.-.|. +.|=|-++...++++++...++++|+...-.-. ..-.++...|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 355555555432 2357777888876665 667778899999999998889999987665421 1236899999999
Q ss_pred CCcEEecccC
Q 019000 205 GIGIVPYSPL 214 (347)
Q Consensus 205 gi~v~a~spl 214 (347)
|+.++.++..
T Consensus 308 gi~~~~h~~~ 317 (404)
T PRK15072 308 QVRTGSHGPT 317 (404)
T ss_pred CCceeeccCc
Confidence 9999886543
No 51
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=68.96 E-value=66 Score=29.28 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=39.6
Q ss_pred HHHHHHcCccceEec-CCCCHHHHHHHhhcCCccee--eeeccccccchhhhHHHHHHHhCCcEEeccc
Q 019000 148 LKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITAV--QMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 148 l~~l~~~G~Ir~iGv-S~~~~~~l~~~~~~~~~~~v--q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (347)
|.+..++|+.- +|+ .......+.+++....+|++ -.+.++++...-..++..++..|+..++.-|
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 55555667753 443 23322234444444446654 5678888776556788888888888777655
No 52
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=68.94 E-value=45 Score=32.21 Aligned_cols=143 Identities=14% Similarity=0.113 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCccCCCCCchHHHHHHHH-hcCCCCCeEEEeeeecc----cCCCccccCCCCHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFF-DTADVYGAHANEVLVGKVL-KQLPRKKIQLASKFGVV----SMAPTSVIVKGTPEYVRS 113 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~-DTA~~Yg~g~sE~~lG~~l-~~~~R~~v~i~tK~~~~----~~~~~~~~~~~~~~~i~~ 113 (347)
+.+.-.+=++.|++.|-..+ |-+. .| .-..+.+.+ +. ..+-|-|=-=+. .........+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIEA---SPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHc---CCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 55555666899999998644 5443 23 333344433 32 111111100000 000001123568888888
Q ss_pred HHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccch
Q 019000 114 CCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDI 193 (347)
Q Consensus 114 ~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~ 193 (347)
.+|+-.+ |-||.+-+|.- -+.+.++.++++|+ ..|+-+-.-.-+...+.... .=|++...
T Consensus 148 ~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------~ENPlye~- 207 (431)
T PRK13352 148 VIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------KENPLYEH- 207 (431)
T ss_pred HHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------CcCchHHH-
Confidence 8887766 66899999984 25677888998885 45665554444443332211 23566554
Q ss_pred hhhHHHHHHHhCCcEE
Q 019000 194 EEEIIPLCRELGIGIV 209 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~ 209 (347)
.+++++.|++++|.+-
T Consensus 208 fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 208 FDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHhCeeee
Confidence 3689999999999874
No 53
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=68.26 E-value=1.2e+02 Score=29.32 Aligned_cols=148 Identities=12% Similarity=0.040 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCccCCCCCc---hHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 40 SEEDGISIIKHAFN-KGITFFDTADVYGAHA---NEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~---sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
+.++..+.++.+.+ .|++.|=.-. |... ..+.+. ++++.- .++.|..=.. ..++++...+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v~-avRea~-~~~~l~vDaN----------~~w~~~~A~~-- 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAVK-ALAEAF-PGARLRLDPN----------GAWSLETAIR-- 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHHH-HHHHhC-CCCcEEEeCC----------CCcCHHHHHH--
Confidence 55666666777765 6999875432 2111 112222 333321 1333332221 1235544333
Q ss_pred HHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-ch
Q 019000 116 EASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DI 193 (347)
Q Consensus 116 e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~ 193 (347)
-+++|. . ++.++-.|-+ -++.+.+|++...+- +.|-|.++.+++.++++...++++|......-. ..
T Consensus 232 --~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~ 300 (395)
T cd03323 232 --LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRG 300 (395)
T ss_pred --HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHH
Confidence 334443 2 6767777653 467788888877665 667677888899999998889999887664321 12
Q ss_pred hhhHHHHHHHhCCcEEecccC
Q 019000 194 EEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~spl 214 (347)
-.++...|+++||.+..++..
T Consensus 301 ~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 301 SVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHHcCCeEEEecCc
Confidence 368999999999999887754
No 54
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.58 E-value=81 Score=27.17 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
|.+.+.+++..+++.|+...|. | +..+..+++.. .+++++++-= ....+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~-----~~~l~p~m~~vG~~w~~~~i~va~e-------------~~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I-----EEGLAPGMDIVGDKYEEGEIFVPEL-------------LMAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----HHHHHHHHHHHHHHHccCCeeHHHH-------------HHHHHHHHHHH
Confidence 7889999999999999765542 2 22333333321 2333333211 12233444444
Q ss_pred HHHHhHhCCCc---ccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhhcCCcceeeeecccccc
Q 019000 116 EASLKRLGVDY---IDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR 191 (347)
Q Consensus 116 e~SL~rL~~d~---iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~ 191 (347)
..-...+.... ---+++-.+..+.+.-...=.-.-|+..|. +.++| .+.+.+.+.+.+....++++-+.++.-..
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 44444443322 113444444333332222222334667886 46678 56678888888777788888877755443
Q ss_pred c-hhhhHHHHHHHhCC
Q 019000 192 D-IEEEIIPLCRELGI 206 (347)
Q Consensus 192 ~-~~~~l~~~~~~~gi 206 (347)
. .-.++++.+++.+.
T Consensus 147 ~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 147 MGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 2 22678888888754
No 55
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=67.29 E-value=35 Score=33.14 Aligned_cols=86 Identities=12% Similarity=-0.026 Sum_probs=62.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHc------CccceEecCCCCHHHHHHHhhcCCcceeeeeccccccc-hhhhHHHH
Q 019000 128 DLYYQHRVDPSVPIEDTIGELKMLVVE------GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRD-IEEEIIPL 200 (347)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~l~~l~~~------G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~-~~~~l~~~ 200 (347)
++ ++-.|-+..+.++.++.+.+|+++ ..=-..+=|.++.+.+.++++....+++|+..+-+-.- .-.++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777776544434567778887766 33335555677899999999988889999987754221 13689999
Q ss_pred HHHhCCcEEecccC
Q 019000 201 CRELGIGIVPYSPL 214 (347)
Q Consensus 201 ~~~~gi~v~a~spl 214 (347)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987654
No 56
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.98 E-value=34 Score=32.39 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=58.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
.++.++-.|-+. +.++.+.+|+++.-+. +.|=|.++.+.+..+++...++++|+.....-. ..-.++.+.|+++
T Consensus 202 ~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~ 277 (352)
T cd03325 202 YRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAY 277 (352)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 345555555432 2467788888776555 556677899999998887788999988654421 1236899999999
Q ss_pred CCcEEecc
Q 019000 205 GIGIVPYS 212 (347)
Q Consensus 205 gi~v~a~s 212 (347)
||.++..+
T Consensus 278 gi~~~~h~ 285 (352)
T cd03325 278 DVALAPHC 285 (352)
T ss_pred CCcEeccC
Confidence 99998654
No 57
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=66.81 E-value=1.3e+02 Score=29.27 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=59.2
Q ss_pred cCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC-----CcccEEEec
Q 019000 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV-----DYIDLYYQH 133 (347)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~-----d~iDl~~lH 133 (347)
..|| .|..|-+++++. +.+=++|.|-+.... +-..++...++++. ..+.++.+|
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l--------------iGdDi~~v~~~~~~~~~~~~~~~vi~v~ 123 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET--------------IGDDVAGFIKEFRAEGPEPADFPVVYAS 123 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh--------------cCCCHHHHHHHHHhhccCCCCCeEEEee
Confidence 4566 577777888664 333466766664332 22333444444432 236678888
Q ss_pred CCCCCCC----HHHHHHHHHHH-------HHcCccceEecCCC---CHHHHHHHhhcCCcceeee
Q 019000 134 RVDPSVP----IEDTIGELKML-------VVEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 134 ~~~~~~~----~~~~~~~l~~l-------~~~G~Ir~iGvS~~---~~~~l~~~~~~~~~~~vq~ 184 (347)
.|..... .+.++++|-+. ++.++|--||-++. +.+.+.++++...+.++.+
T Consensus 124 tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 124 TPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 8765532 22344444332 23466888876654 4678888888766665543
No 58
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=66.51 E-value=25 Score=33.96 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCC-------------CCHHH---HH-HHHHHHHHcCccceEecCCCCH
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-------------VPIED---TI-GELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~-------------~~~~~---~~-~~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
+.+.+++.++..+ +|+.++|.+|.+.--... .+.++ .+ .+.+.|.+.|.. ++++|||..
T Consensus 180 t~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 180 TLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 5666666666544 477778877766522110 01111 22 244557777864 588888853
No 59
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=65.87 E-value=82 Score=28.25 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=53.0
Q ss_pred HHhHhCCCcccEEEecCCCCCCCH-HHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeeeccccccc-hh
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPI-EDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRD-IE 194 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~-~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~-~~ 194 (347)
-|+.+| +|.+.+|..+..... .--++.+.++++.-.+.-|..... +.+.+.++++...++.+.+---+.... ..
T Consensus 163 ~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~ 239 (254)
T TIGR00735 163 EVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITI 239 (254)
T ss_pred HHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCH
Confidence 345566 566667765443111 112455666666656666666654 688898888877677665532222222 13
Q ss_pred hhHHHHHHHhCCcE
Q 019000 195 EEIIPLCRELGIGI 208 (347)
Q Consensus 195 ~~l~~~~~~~gi~v 208 (347)
.++.+.|+++||.+
T Consensus 240 ~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 240 GEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHCCCcc
Confidence 67899999999874
No 60
>PRK14017 galactonate dehydratase; Provisional
Probab=65.64 E-value=33 Score=32.88 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=60.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
+++.++-.|-+.. .++.+.+|+++..+. +.|=|.++...+..+++...++++|+..+.+-. ..-.++.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 4555566554322 246788888877665 667778899999999998888999987665421 1236899999999
Q ss_pred CCcEEecccC
Q 019000 205 GIGIVPYSPL 214 (347)
Q Consensus 205 gi~v~a~spl 214 (347)
||.++.++..
T Consensus 279 gi~~~~h~~~ 288 (382)
T PRK14017 279 DVALAPHCPL 288 (382)
T ss_pred CCeEeecCCC
Confidence 9999887543
No 61
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=64.92 E-value=70 Score=28.74 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=39.0
Q ss_pred HHHHHHcCccceEec-CCCCHHHHHHHhhcCCcce--eeeeccccccchhhhHHHHHHHhCCcEEecccC
Q 019000 148 LKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITA--VQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 148 l~~l~~~G~Ir~iGv-S~~~~~~l~~~~~~~~~~~--vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 214 (347)
|++..++|+. .+|+ .+.....+.+++....+|+ +-++..+++...-..++..++..|+..+..-|-
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3444455664 3443 2332233444455444554 455778877654467888888888888877654
No 62
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.61 E-value=1.3e+02 Score=28.39 Aligned_cols=149 Identities=16% Similarity=0.061 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhH
Q 019000 42 EDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKR 121 (347)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~r 121 (347)
++..+.+..+.+.|++.|=.=- +.....+.+- ++++.-. ++ ++..... ..++.+... + +++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l~-~vr~~~g-~~----~l~lDaN------~~~~~~~a~--~---~~~ 199 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPLK-AVRERFP-DI----PLMADAN------SAYTLADIP--L---LKR 199 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHHH-HHHHHCC-CC----eEEEECC------CCCCHHHHH--H---HHH
Confidence 6677888888999998874321 2212334442 3333211 22 2222211 134555432 2 344
Q ss_pred hCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCcc-ceEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHH
Q 019000 122 LGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKI-KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIP 199 (347)
Q Consensus 122 L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~I-r~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~ 199 (347)
|. ..++.++-.|-.. +-++.+.+++++-.+ -+.|=|.++.+.+..+++...++++|+..+.+-. ..-.++..
T Consensus 200 l~--~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~ 273 (354)
T cd03317 200 LD--EYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHD 273 (354)
T ss_pred hh--cCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHH
Confidence 42 3466677766432 235667777665432 3667777899999999988888999987665432 12367999
Q ss_pred HHHHhCCcEEecccCc
Q 019000 200 LCRELGIGIVPYSPLG 215 (347)
Q Consensus 200 ~~~~~gi~v~a~spl~ 215 (347)
.|+.+||.++..+.+.
T Consensus 274 ~A~~~gi~~~~g~~~e 289 (354)
T cd03317 274 LCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHcCCcEEecCccc
Confidence 9999999997755443
No 63
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=64.58 E-value=99 Score=30.68 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCccCCCCCc--hHHHHHHHHhcC----CCCCeEEEeeeecc------------cCCC
Q 019000 39 VSEEDGISIIKHAFNK-GITFFDTADVYGAHA--NEVLVGKVLKQL----PRKKIQLASKFGVV------------SMAP 99 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~--sE~~lG~~l~~~----~R~~v~i~tK~~~~------------~~~~ 99 (347)
.+.++..++++.+++. +++.=|.+..+.... .-..|.++-+.. ..+.|++.+=+... ....
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 3666688888888873 566556655554211 112233332221 22334433322110 0000
Q ss_pred c-cccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHH----cCccceEecC--CCCHHHHHH
Q 019000 100 T-SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV----EGKIKYIGLS--EASPDTIRR 172 (347)
Q Consensus 100 ~-~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~----~G~Ir~iGvS--~~~~~~l~~ 172 (347)
. ......+.+.|.+.++. +.++|...+-|+-=..| +..+++-+.+.++.+++ .|.++.|+++ ..+.+++++
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 0 01134688999999985 57899877766422222 33456666667777665 5777777775 357888888
Q ss_pred HhhcC--Ccceeeeeccc-----ccc-----ch--hhhHHHHHHHhCCcEEe
Q 019000 173 AHAVH--PITAVQMEWSL-----LTR-----DI--EEEIIPLCRELGIGIVP 210 (347)
Q Consensus 173 ~~~~~--~~~~vq~~~n~-----~~~-----~~--~~~l~~~~~~~gi~v~a 210 (347)
+.+.+ .+...|-.||. +++ +. .-+.++.+++.||.-+.
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 87754 33344544442 111 11 24688889999987443
No 64
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=64.40 E-value=68 Score=28.20 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-cCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTA-DVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~ 117 (347)
.+.++..++++...+.||..|+.. +..+. ...+.+.+..+..+. ..+.+-+. ...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~--~~~~~~~~------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPN--ARLQALCR------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHS--SEEEEEEE------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcc--cccceeee------------ehHHHHHHHHHh
Confidence 478899999999999999999999 33331 123345444433222 22222221 245566666653
Q ss_pred HHhHhCCCcccEEEecCCC-----CCCC----HHHHHHHHHHHHHcCccceEecCC---CCHHHHHHHhhc---CCccee
Q 019000 118 SLKRLGVDYIDLYYQHRVD-----PSVP----IEDTIGELKMLVVEGKIKYIGLSE---ASPDTIRRAHAV---HPITAV 182 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~-----~~~~----~~~~~~~l~~l~~~G~Ir~iGvS~---~~~~~l~~~~~~---~~~~~v 182 (347)
. ...|.+.+.++.-=++. .... .+.+.+..+.+++.|....+++.. ++++.+.++.+. ..++.+
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 3 46777777765422210 0011 344556667777888888888743 455555444332 234444
Q ss_pred eee--ccccccchhhhHHHHHHH
Q 019000 183 QME--WSLLTRDIEEEIIPLCRE 203 (347)
Q Consensus 183 q~~--~n~~~~~~~~~l~~~~~~ 203 (347)
.+. +..+.+..-.+++...++
T Consensus 155 ~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 155 YLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp EEEETTS-S-HHHHHHHHHHHHH
T ss_pred EeeCccCCcCHHHHHHHHHHHHH
Confidence 332 223333222455555554
No 65
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=64.02 E-value=32 Score=32.83 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCC------------CCCH-H---HHH-HHHHHHHHcCccceEecCCCCH
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP------------SVPI-E---DTI-GELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~------------~~~~-~---~~~-~~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
.+.+.+.+.++..+ .|+.++|.+|.+.--.. ..+. + +.+ .+.+.|.+.|. .++++|||..
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 37778888887766 48899999988773211 0111 1 122 23445666776 4578888754
No 66
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=63.77 E-value=53 Score=33.78 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhhcCCcceeeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~~ 185 (347)
+.+.++.. ..+|.|++-+.+........+.+.+...+.+....-.++.+||- |-+++.+.++.+...++++|++
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555554 45899999998656444444555423333333333357789995 7789999999988999999997
Q ss_pred cc
Q 019000 186 WS 187 (347)
Q Consensus 186 ~n 187 (347)
-+
T Consensus 87 G~ 88 (610)
T PRK13803 87 GA 88 (610)
T ss_pred CC
Confidence 54
No 67
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=63.35 E-value=1e+02 Score=26.90 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=99.6
Q ss_pred CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEec
Q 019000 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGL 162 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGv 162 (347)
-++++++-|+-....+ +.+..++.+++.-+..|.+ -+.|-..++ .++-+..... +.--|.|
T Consensus 27 ~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~yg~~---gv~i~~~np----~~l~~~V~k~----~~~vv~V 87 (216)
T PRK03892 27 FDEVVFTKKLVLEDSP--------DFGSLKEELKELKKEYGKV---AILLVTPKP----SLIREVKQRF----LNYLIYV 87 (216)
T ss_pred hhheEEEEEEeccCCC--------ChhhhHHHHHHHHHhcCcc---eEEEecCCH----HHHHHHHHhc----cceEEEE
Confidence 3678888888654321 4456778888888888855 444444433 2222222222 4556666
Q ss_pred CCCCHHHHHHHhhcCCcceeeeec-cccccchhhhHHHHHHHhCCcE-EecccCccccCCCCCcCCCCCCCcccccCCCC
Q 019000 163 SEASPDTIRRAHAVHPITAVQMEW-SLLTRDIEEEIIPLCRELGIGI-VPYSPLGRGLLGGKAVVESLPANSFLISHPRF 240 (347)
Q Consensus 163 S~~~~~~l~~~~~~~~~~~vq~~~-n~~~~~~~~~l~~~~~~~gi~v-~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (347)
-.-+...-..+++. .+|++-.++ +--+...+.-+...+.++||++ +..+|+-...
T Consensus 88 ~GGd~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~---------------------- 144 (216)
T PRK03892 88 QGGDLRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRAN---------------------- 144 (216)
T ss_pred ECCcHHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhC----------------------
Confidence 65555555555665 667654332 2222234567889999999998 5677775320
Q ss_pred CCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCCC
Q 019000 241 TGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMK 303 (347)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~~ 303 (347)
+..-.+.+..+..+..++++|+.+. +++.. ..-+.+.++|.+|......+++.
T Consensus 145 -G~~Rar~L~~~r~~l~L~rKYd~P~-------VISS~--A~s~~~lRsPRdl~aL~~~iGme 197 (216)
T PRK03892 145 -PYERANILRFMMKAWQLVNKYKVPR-------FITSS--AESKWEVRGPRDLMSLGINIGME 197 (216)
T ss_pred -chhHHHHHHHHHHHHHHHHHcCCCE-------EEecC--cchhccCCCHHHHHHHHHHhCCC
Confidence 0011234556667777888887642 23333 34456777888888877777654
No 68
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=62.82 E-value=44 Score=32.53 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=69.1
Q ss_pred ccccccccccccC----CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeeccc
Q 019000 21 VSKLGFGCMGLTG----MYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVS 96 (347)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~ 96 (347)
|.+|.+|..+|.. ..|+.-+.+++.+.+..+-+.|+.-+---=.||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 4488888877753 1233346677888888888888876655556661
Q ss_pred CCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCC-----------CCC-HH---HHHHHHH-HHHHcCccceE
Q 019000 97 MAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-----------SVP-IE---DTIGELK-MLVVEGKIKYI 160 (347)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~-----------~~~-~~---~~~~~l~-~l~~~G~Ir~i 160 (347)
+.-+.+.+.+.+++.+ .|+.|+|.+|.+-.... ..+ .+ +.++... .|.+.|. +.|
T Consensus 199 -------P~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 199 -------PGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred -------CCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 1225666777776655 46789999988754311 011 12 3444433 4566777 999
Q ss_pred ecCCCCH
Q 019000 161 GLSEASP 167 (347)
Q Consensus 161 GvS~~~~ 167 (347)
|+|||..
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999976
No 69
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=62.71 E-value=1.3e+02 Score=27.94 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCCCch--HHHHHHHH---hcC-CCCCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGAHAN--EVLVGKVL---KQL-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s--E~~lG~~l---~~~-~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
.+.++..++++.+.+.|++.+.-. | |.. ..-+-+.+ ++. .-.++.|+|-... +.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~i~~~~~~~~i~itTNG~l----------------l~ 108 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAALAALPGIRDLALTTNGYL----------------LA 108 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHHHHhcCCCceEEEEcCchh----------------HH
Confidence 578899999999999999887632 3 211 01122233 321 1234555555311 11
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCC--------CCCHHHHHHHHHHHHHcCc----cceEecCCCCHHHHHHHhh---cC
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDP--------SVPIEDTIGELKMLVVEGK----IKYIGLSEASPDTIRRAHA---VH 177 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~--------~~~~~~~~~~l~~l~~~G~----Ir~iGvS~~~~~~l~~~~~---~~ 177 (347)
+. -+.|...|++.|- +-||..++ ...++.++++++.+++.|. |..+.+...+.+++.++++ ..
T Consensus 109 ~~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~ 186 (331)
T PRK00164 109 RR-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDR 186 (331)
T ss_pred HH-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhC
Confidence 11 2335555655443 33444432 2357889999999999885 3344444455555555443 34
Q ss_pred Ccceeeeeccccccc---------hhhhHHHHHHHhCCcEEe
Q 019000 178 PITAVQMEWSLLTRD---------IEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 178 ~~~~vq~~~n~~~~~---------~~~~l~~~~~~~gi~v~a 210 (347)
++.+.-++|.++... ...++++..+++|+.+..
T Consensus 187 gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 187 GIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 455555555554321 114677888887765443
No 70
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=62.16 E-value=1.7e+02 Score=28.91 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=60.7
Q ss_pred eCccCCCCCchHHHHHHHHhcC----CC-CCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHh-HhCCCcccEEEec
Q 019000 60 DTADVYGAHANEVLVGKVLKQL----PR-KKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLK-RLGVDYIDLYYQH 133 (347)
Q Consensus 60 DTA~~Yg~g~sE~~lG~~l~~~----~R-~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~-rL~~d~iDl~~lH 133 (347)
+..-.|| .|+.|-++|++. +. +=++|.|-+....-+ -+.+.+-+.+++-++ ...--.+.++.+|
T Consensus 63 E~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIG-------DDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 63 EDSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIG-------DDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhc-------cCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 3446788 677777888663 22 336777776433211 133333333333221 1110147889999
Q ss_pred CCCCCCCH----HHHHHHHHH-HHH----cCccceEecCC--CCHHHHHHHhhcCCcceeee
Q 019000 134 RVDPSVPI----EDTIGELKM-LVV----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 134 ~~~~~~~~----~~~~~~l~~-l~~----~G~Ir~iGvS~--~~~~~l~~~~~~~~~~~vq~ 184 (347)
.|+..... +.+++++-+ +.. +++|--||-.+ .+.+.++++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 88766432 233333322 222 46688886433 24567777777766666644
No 71
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=62.15 E-value=32 Score=32.41 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=59.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
.++.++-.|-+. +.++.+.+|+++..|. +.|=|.++...+.++++...++++|+..+..-. ..-.++...|+++
T Consensus 197 ~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~ 272 (341)
T cd03327 197 YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAY 272 (341)
T ss_pred cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 355556655432 2466777888887766 666677899999999998889999987665421 1236899999999
Q ss_pred CCcEEecc
Q 019000 205 GIGIVPYS 212 (347)
Q Consensus 205 gi~v~a~s 212 (347)
|+.++.++
T Consensus 273 g~~~~~h~ 280 (341)
T cd03327 273 GVPVVPHA 280 (341)
T ss_pred CCeecccc
Confidence 99987653
No 72
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=62.08 E-value=30 Score=34.10 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhhcCCcceeeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~~ 185 (347)
+++.++.+. .+|.|++-+.+........+.+.+-+....+. ++.+||- |-+++.+.++++...++++|++
T Consensus 266 ~~eda~~a~-----~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH 336 (454)
T PRK09427 266 RPQDAKAAY-----DAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLH 336 (454)
T ss_pred CHHHHHHHH-----hCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC
Confidence 455555544 48999999875443223344433332222222 8889997 6789999999988999999998
Q ss_pred ccc
Q 019000 186 WSL 188 (347)
Q Consensus 186 ~n~ 188 (347)
-+-
T Consensus 337 G~e 339 (454)
T PRK09427 337 GDE 339 (454)
T ss_pred CCC
Confidence 653
No 73
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.86 E-value=98 Score=29.66 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=59.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHc------CccceEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHH
Q 019000 129 LYYQHRVDPSVPIEDTIGELKMLVVE------GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLC 201 (347)
Q Consensus 129 l~~lH~~~~~~~~~~~~~~l~~l~~~------G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~ 201 (347)
++++-.|-+..+.++-++.+.++.+. +.=-..|=|.++.+.+.++++....+++|+..+-.-. ..-.++..+|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34666665433322346777777766 3434566677889999999988888999998775432 1236899999
Q ss_pred HHhCCcEEeccc
Q 019000 202 RELGIGIVPYSP 213 (347)
Q Consensus 202 ~~~gi~v~a~sp 213 (347)
+.+||.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 74
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=60.67 E-value=45 Score=27.10 Aligned_cols=62 Identities=8% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhC--CCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019000 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG--VDYIDLYYQHRVDPSVPIEDTIGELKMLVVE 154 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~--~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (347)
|=-+.|+-|+|.- ..+..|++.+.++++.+. ....|++++.......++.++...|..+.++
T Consensus 47 RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 4446677776642 367788888888888764 4578999999987767777777777766654
No 75
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=60.51 E-value=56 Score=30.71 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=56.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCC
Q 019000 128 DLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGI 206 (347)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi 206 (347)
++.++-.|-.. ++.|.+++++-.|. +.|=|-++.+.+.+++.....+++|+..+.+-. -.++++.|+++||
T Consensus 162 ~l~~iEqP~~~------~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi 233 (327)
T PRK02901 162 PLEYVEQPCAT------VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGL 233 (327)
T ss_pred CceEEecCCCC------HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCC
Confidence 55555555321 46666666653333 455566788888888888888999988776543 2567889999999
Q ss_pred cEEecccCccc
Q 019000 207 GIVPYSPLGRG 217 (347)
Q Consensus 207 ~v~a~spl~~G 217 (347)
.++..|.+.++
T Consensus 234 ~v~v~s~~es~ 244 (327)
T PRK02901 234 PVVVSSALDTS 244 (327)
T ss_pred cEEEeCCcccH
Confidence 99988777654
No 76
>PLN02363 phosphoribosylanthranilate isomerase
Probab=60.26 E-value=44 Score=30.19 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhhcCCcceeeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~~ 185 (347)
+.+.++... ++|.|+|-+++..........+ ..+.+.+......++.+||. |-+++.+.++++...++++|++
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 566666544 5899999997544322223333 33333333333246679995 7789999999998999999997
Q ss_pred cc
Q 019000 186 WS 187 (347)
Q Consensus 186 ~n 187 (347)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 53
No 77
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=60.24 E-value=30 Score=30.47 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcCccceEec----CCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCc
Q 019000 140 PIEDTIGELKMLVVEGKIKYIGL----SEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 140 ~~~~~~~~l~~l~~~G~Ir~iGv----S~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 215 (347)
..++..++|..++ +.+|.. |.+....++++++...+. .|.++-+....+++...-+.|..++.-+.-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~----~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK----VYAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE----EeecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 3556677777776 444544 445555666666654443 3455544445678888888888887777777
Q ss_pred cccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCHH
Q 019000 216 RGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPA 267 (347)
Q Consensus 216 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 267 (347)
.|+-.. |-...+ ..+.++.+..+.++||+.|+
T Consensus 146 ~gL~~~------------------~lGr~i--~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDES------------------WLGRRI--DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCChH------------------HhCCcc--CHHHHHHHHHHHHhcCCCcc
Confidence 765210 000001 12456789999999998764
No 78
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=59.45 E-value=1.3e+02 Score=26.66 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHhHhCCCcccEEEecCCCCCCCH-HHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeeeccccccch-h
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPI-EDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDI-E 194 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~-~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~~-~ 194 (347)
.++.+| +|.+.+|..+..... .--++.++++++.-.+.-|..... +++.++++++...++.+.+---++.... .
T Consensus 157 ~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~ 233 (243)
T cd04731 157 EVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTI 233 (243)
T ss_pred HHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCH
Confidence 345556 555666665432111 113555666666556666666554 6778888877666666666433333221 2
Q ss_pred hhHHHHHHHh
Q 019000 195 EEIIPLCREL 204 (347)
Q Consensus 195 ~~l~~~~~~~ 204 (347)
.++..+|++|
T Consensus 234 ~~~~~~~~~~ 243 (243)
T cd04731 234 AELKEYLAER 243 (243)
T ss_pred HHHHHHHhhC
Confidence 4566666653
No 79
>PRK13796 GTPase YqeH; Provisional
Probab=59.37 E-value=1.7e+02 Score=27.96 Aligned_cols=135 Identities=13% Similarity=0.210 Sum_probs=86.1
Q ss_pred ccccccccccCCCC----CCCCHHHHHHHHHHHHHcC---CCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecc
Q 019000 23 KLGFGCMGLTGMYN----SPVSEEDGISIIKHAFNKG---ITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVV 95 (347)
Q Consensus 23 ~lglG~~~~~~~~~----~~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~ 95 (347)
.+|-=|..+-. |+ ...+.++..++++..-+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|+-..
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl 109 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLL 109 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhC
Confidence 45655655532 22 2246667777887777655 45678665443 22334444433 45668899998654
Q ss_pred cCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHH
Q 019000 96 SMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTI 170 (347)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l 170 (347)
.. ....+.+.+-++.-.+.+|....|++++..-. ...++++++.+.++.+.+.+--+|.+|..-..|
T Consensus 110 ~~-------~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 110 PK-------SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CC-------ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 21 22455666666666777786555777766543 345788888888887788899999999976554
No 80
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.21 E-value=1.6e+02 Score=27.79 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCC-CchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGA-HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
+.++..+.+..+.+.|++.|=.=-.... ....+.+ +++++.-.+++.|..-.. ..++.+...+-+ +.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v-~air~~~g~~~~l~vDaN----------~~~~~~~A~~~~-~~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVV-RSIRQAVGDGVGLMVDYN----------QSLTVPEAIERG-QA 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHH-HHHHHhhCCCCEEEEeCC----------CCcCHHHHHHHH-HH
Confidence 3455566667777888876532111110 0122233 244443233444443221 134555433322 23
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhh
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEE 196 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~ 196 (347)
|+.+ ++.++..|-... -++.+.+|++.--|. +.|=|.++...+.++++...++++|+..+..-. ..-.+
T Consensus 209 l~~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQH----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred HHcC-----CCCEEECCCCCc----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHH
Confidence 3433 556666664332 356677777764433 456667899999999988888999887665432 12367
Q ss_pred HHHHHHHhCCcEEec
Q 019000 197 IIPLCRELGIGIVPY 211 (347)
Q Consensus 197 l~~~~~~~gi~v~a~ 211 (347)
+...|+.+|+.++.+
T Consensus 280 ia~~A~~~gi~~~~h 294 (355)
T cd03321 280 ASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHcCCeeccc
Confidence 999999999998643
No 81
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=58.22 E-value=76 Score=29.99 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCC-CCC--------CCHHHHHH-HHHHHHHcCccceEecCCCCH
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRV-DPS--------VPIEDTIG-ELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~-~~~--------~~~~~~~~-~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
.+.+.+++.++..+ +|+.++|.+|.+.-- ... .+.++.+. +.+.|.+.|- ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 36777777776544 588888888876632 110 11223333 3455666785 5688888764
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=57.92 E-value=91 Score=28.08 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHc-CccceEecC---CCCHHHHHHHhh
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-----SVPIEDTIGELKMLVVE-GKIKYIGLS---EASPDTIRRAHA 175 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~-G~Ir~iGvS---~~~~~~l~~~~~ 175 (347)
.++.+...+ +-+.|.++|+++|.+-+...... ..+....++.++.+++. +..+...++ ......++++.+
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 455565544 44559999999999976532110 00112245555555433 346655554 224566766665
Q ss_pred cCCcceeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 176 VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 176 ~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
. .++.+.+.++.-+...-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4566655444333222367899999999876553
No 83
>PRK05660 HemN family oxidoreductase; Provisional
Probab=57.69 E-value=62 Score=31.00 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecC-CCC-------C-CCHHHHHH----HHHHHHHcCccceEecCCCCH
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDP-------S-VPIEDTIG----ELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~-~~~-------~-~~~~~~~~----~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
.+.+.+.+.++..++ |+.++|.+|.+-- |.. . .+.++.++ +.+.|.+.|. ..+++|||..
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 367777777776544 8888888887752 211 0 11222333 2334666776 4578888754
No 84
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=57.08 E-value=14 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH
Q 019000 254 RVENLAKRNKCTPAQLSLAWLL 275 (347)
Q Consensus 254 ~l~~ia~~~g~s~~q~al~w~l 275 (347)
.+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999985
No 85
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=56.95 E-value=44 Score=29.91 Aligned_cols=111 Identities=23% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCC--------------C----chHHHHHHHHhcCCCCCeEEEeeeecccCCCc
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGA--------------H----ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPT 100 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--------------g----~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~ 100 (347)
.+.++..++.+.|-+.||.||=|.-.-.. + .+-.+|-..-+ ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~s------- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGMS------- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCCC-------
Confidence 47888999999999999999976643210 0 01122221111 345566666443
Q ss_pred cccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC-CCHH-HHHHHHHHHHHcCccceEecCCCCHH
Q 019000 101 SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIE-DTIGELKMLVVEGKIKYIGLSEASPD 168 (347)
Q Consensus 101 ~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~-~~~~-~~~~~l~~l~~~G~Ir~iGvS~~~~~ 168 (347)
+-+.|.++++.-.++- .-++.++|+...- .+.+ --++.|..|++.=- --||+|.|+..
T Consensus 124 ------tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 124 ------TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ------CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 4556666665543333 4689999987432 2333 34666666665433 56899998753
No 86
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=56.88 E-value=18 Score=27.66 Aligned_cols=54 Identities=24% Similarity=0.209 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHhCCcEEecccCccc
Q 019000 163 SEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 163 S~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
|.++...+.++++...++++|+.....-. ..-..+.++|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 56788899999998888999987554321 1236899999999999999886 543
No 87
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=55.92 E-value=58 Score=31.06 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEec
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQH 133 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH 133 (347)
.+.+.+++.++..+ +|+.++|.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 46777877777544 5899999888876
No 88
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=55.81 E-value=2.1e+02 Score=28.06 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=72.6
Q ss_pred ccCCCCCchHHHHHHHHhcC----CC-CCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCC
Q 019000 62 ADVYGAHANEVLVGKVLKQL----PR-KKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVD 136 (347)
Q Consensus 62 A~~Yg~g~sE~~lG~~l~~~----~R-~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~ 136 (347)
.-.|| .|..|-++|++. ++ +=++|.|-+.... --+++..-+++.-++++ +.++.+|.++
T Consensus 96 d~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----------iGdDi~~v~~~~~~~~~---~pvi~v~t~g 159 (443)
T TIGR01862 96 DIVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL----------IGDDIEAVAKEVSKEIG---KDVVAVNCPG 159 (443)
T ss_pred ceeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHHH----------hccCHHHHHHHHHHhcC---CCEEEEecCC
Confidence 34677 577777777653 33 4566777664332 11223333333333443 7899999886
Q ss_pred CCCC-----HHHHHHH-HHHHH--------HcCccceEecCCC--CHHHHHHHhhcCCcceee-e---------------
Q 019000 137 PSVP-----IEDTIGE-LKMLV--------VEGKIKYIGLSEA--SPDTIRRAHAVHPITAVQ-M--------------- 184 (347)
Q Consensus 137 ~~~~-----~~~~~~~-l~~l~--------~~G~Ir~iGvS~~--~~~~l~~~~~~~~~~~vq-~--------------- 184 (347)
.... +..+.++ ++.+. +.++|--||-.++ +.+++.++++...+.++- +
T Consensus 160 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A 239 (443)
T TIGR01862 160 FAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKA 239 (443)
T ss_pred ccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccC
Confidence 5431 2233333 33343 2467888886554 456777777765554432 1
Q ss_pred eccccc-cchhhhHHHHHH-HhCCcEEecccC
Q 019000 185 EWSLLT-RDIEEEIIPLCR-ELGIGIVPYSPL 214 (347)
Q Consensus 185 ~~n~~~-~~~~~~l~~~~~-~~gi~v~a~spl 214 (347)
.+|+.. +.......++.+ +.|+.++...|+
T Consensus 240 ~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 240 KLNLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred CEEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 233321 111122334444 559999887664
No 89
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.24 E-value=1.6e+02 Score=26.50 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHH-HHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeee
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTI-GELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~-~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~ 184 (347)
.+++.+.+..++.++ -|.|+||+-. .|. ..+.++.+ +.+..+++.-. .-|.+-+++++.++++++.+.=..+-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 466777777777765 4999999865 233 22333333 33222332212 237888899999999998621122333
Q ss_pred ecccccc-chhhhHHHHHHHhCCcEEeccc
Q 019000 185 EWSLLTR-DIEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 185 ~~n~~~~-~~~~~l~~~~~~~gi~v~a~sp 213 (347)
..+.... .....+++.++++|..++.+.-
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 4444331 1135688999999999988743
No 90
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=54.86 E-value=85 Score=27.62 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=50.8
Q ss_pred CHHHHHHHhhcCCcceee----eeccccccch---hhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCC
Q 019000 166 SPDTIRRAHAVHPITAVQ----MEWSLLTRDI---EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHP 238 (347)
Q Consensus 166 ~~~~l~~~~~~~~~~~vq----~~~n~~~~~~---~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~ 238 (347)
++++++.+.+...+.++- .+||.++... ...+.++++.-|-.-+.+.|+..|-..+. .
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~----~----------- 114 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT----A----------- 114 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----c-----------
Confidence 455666665555544332 2566665432 26899999999999999999987522111 0
Q ss_pred CCCCCccchhHHHHHHHHHHHHhcCCC
Q 019000 239 RFTGENLGKNKQIYARVENLAKRNKCT 265 (347)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~ia~~~g~s 265 (347)
.........+++|+.|-+++|++
T Consensus 115 ----vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 115 ----VRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ----cchHHHHHHHHHhhHHHHHhCcc
Confidence 01123456677888888888863
No 91
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.43 E-value=73 Score=29.29 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeee
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~ 184 (347)
.++.+. +..+-+.|.++|+++|.+-.++.|.......+.++.+..+.+...++...+. .+...++++++.. ++.+.+
T Consensus 22 ~~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i 98 (287)
T PRK05692 22 FIPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAV 98 (287)
T ss_pred CcCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEE
Confidence 345554 3445566999999999987555553221122335555555544445555554 4677788887753 333333
Q ss_pred eccccc--------cch------hhhHHHHHHHhCCcEEe
Q 019000 185 EWSLLT--------RDI------EEEIIPLCRELGIGIVP 210 (347)
Q Consensus 185 ~~n~~~--------~~~------~~~l~~~~~~~gi~v~a 210 (347)
-.+.-+ ... -.+.+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 322211 111 14789999999998864
No 92
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.43 E-value=1.5e+02 Score=26.83 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCH------HHHHHHHHHHHH-cCccceEecCCCCHHHHHHHhhc
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI------EDTIGELKMLVV-EGKIKYIGLSEASPDTIRRAHAV 176 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~------~~~~~~l~~l~~-~G~Ir~iGvS~~~~~~l~~~~~~ 176 (347)
..++.+...+-++. |.++|+|+|++-+.......... .+.++.+..+.+ .-++..+.-........-+....
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhc
Q ss_pred CCcceeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 177 HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 177 ~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
..++.+.+.+..-.-..-.+.+++++++|+.|...
T Consensus 94 ~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
No 93
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=54.38 E-value=44 Score=32.90 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCeEeCcc---------CCCCCchHHHHHHHHhcCC---CCCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 45 ISIIKHAFNKGITFFDTAD---------VYGAHANEVLVGKVLKQLP---RKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 45 ~~~l~~A~~~Gin~~DTA~---------~Yg~g~sE~~lG~~l~~~~---R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
.+.++...+.|+|.+.-+- ..+.+.+...+-++++... -+.+-+--=+|.. ..+.+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP---------gqt~e~~~ 222 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP---------HQTVESFR 222 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC---------CCCHHHHH
Confidence 3566666667888774331 2232334334444554321 1222222222322 33777788
Q ss_pred HHHHHHHhHhCCCcccEEEe-cCCCC----------CC-CHHHHH----HHHHHHHHcCccceEecCCCCH
Q 019000 113 SCCEASLKRLGVDYIDLYYQ-HRVDP----------SV-PIEDTI----GELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~l-H~~~~----------~~-~~~~~~----~~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
+.++..+ +|+.++|.+|.+ |.|.. .. +.++.+ .+.+.|.+.|. ..+|+++|..
T Consensus 223 ~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 223 ETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred HHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 8777665 688899988866 33320 01 122222 34556778886 4599999864
No 94
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=54.37 E-value=1.2e+02 Score=26.63 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCC-CCchH---HHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYG-AHANE---VLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~sE---~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
+.++...+.+.|.++|..|+=|+..|+ .|.+. +.+.+.++ .+ +-.|..... + +.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi--------r-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV--------R-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC--------C-CHHHHHHHH
Confidence 667788999999999999999999886 34433 33444443 22 344443221 2 778889999
Q ss_pred HHHHhHhCCCc
Q 019000 116 EASLKRLGVDY 126 (347)
Q Consensus 116 e~SL~rL~~d~ 126 (347)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999864
No 95
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=54.09 E-value=54 Score=31.31 Aligned_cols=59 Identities=10% Similarity=-0.064 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecC-CCCC------------CCHHH---H-HHHHHHHHHcCccceEecCCCC
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPS------------VPIED---T-IGELKMLVVEGKIKYIGLSEAS 166 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~-~~~~------------~~~~~---~-~~~l~~l~~~G~Ir~iGvS~~~ 166 (347)
.+.+.+.+.++. +.+|+.++|.+|.+.- |... .+.+. . -.+.+.|.+.|- ..+++|+|.
T Consensus 164 qt~~~~~~~l~~-~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 164 QTIEDFKESLAK-ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCHHHHHHHHHH-HHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 367778887775 4668989888876542 2100 01111 1 234556666775 457888875
No 96
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=53.69 E-value=1.5e+02 Score=25.86 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
.+.++..++.+.|.+.|+.-+=..+.| =....+.|+ ...+-|+|=++++.+. ...+.-...+++.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~~A 79 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETKEA 79 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHHHH
Confidence 478899999999999988776554443 233344443 3478888888877643 2444445555555
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE 154 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (347)
++ +|.|-||+++-...-...+++...+.+.+.++.
T Consensus 80 v~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 80 IK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 54 799999998776543344566677777776653
No 97
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=53.59 E-value=30 Score=27.81 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.3
Q ss_pred cchhhhHHHHHHHhCCcEEecccCc
Q 019000 191 RDIEEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a~spl~ 215 (347)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4555899999999999999987765
No 98
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=53.32 E-value=1.4e+02 Score=29.67 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCccce----EecCCCCHHHHHHHhhc---CCcceeeeeccccccchhhhHHHHHHHhCC
Q 019000 139 VPIEDTIGELKMLVVEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQMEWSLLTRDIEEEIIPLCRELGI 206 (347)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~Ir~----iGvS~~~~~~l~~~~~~---~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi 206 (347)
...++..++++.+++.|..-. +|+-+.+.+.+++.++. ..++ ++.++.+.+-+...+.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 456778899999999986332 56667777777665443 2333 444566666556778888887654
No 99
>PRK06361 hypothetical protein; Provisional
Probab=53.10 E-value=1.5e+02 Score=25.53 Aligned_cols=186 Identities=14% Similarity=0.101 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCeEeCccCCCCCchHHHHH---HHHhcC-CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 43 DGISIIKHAFNKGITFFDTADVYGAHANEVLVG---KVLKQL-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG---~~l~~~-~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
...++++.|.+.|+..|=-+++.....-...+- +..++. ...++.| ..|.... ...++.+ ..+.+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~GiE~~-------~~~~~~~-~~~~~~ 80 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEV--IPGVELT-------HVPPKLI-PKLAKK 80 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEE--EEEEEEc-------ccCchhh-chHHHH
Confidence 467899999999999987666654211111111 111111 1112322 2232211 0122222 333455
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeeeccccccchhhhH
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDIEEEI 197 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l 197 (347)
+.+++ .|+..+|......+.. ...-.++.+.|.+.-+|=-.. ..+.++.+.+ ..+ ++.+......+.....+
T Consensus 81 ~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~-~~~-~lEin~~~~~~~~~~~~ 153 (212)
T PRK06361 81 ARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAE-NGV-FLEITARKGHSLTNGHV 153 (212)
T ss_pred HHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHH-cCe-EEEEECCCCcccchHHH
Confidence 66665 5666899543222211 111145667787655543322 2233333332 221 22222211122234679
Q ss_pred HHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 019000 198 IPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWL 274 (347)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~ 274 (347)
++.+++.|+.++.-|.... + ......+.+..++++.|.+..++--.+.
T Consensus 154 l~~a~~~gi~vv~~SDaH~--------~---------------------~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 154 ARIAREAGAPLVINTDTHA--------P---------------------SDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHhCCcEEEECCCCC--------H---------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999877655431 0 1112356788889999999888765554
No 100
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=52.45 E-value=76 Score=29.43 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=57.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCcc-ceEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHh
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKI-KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 204 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~I-r~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~ 204 (347)
.++.++-.|-+.. +.+..+.++-.+ -+.|=|-++.+.+.++++...++++|+.....-. ..-.++.+.|+.+
T Consensus 183 ~~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 4556666654221 455566555332 2555667788888888888778888887665422 1236899999999
Q ss_pred CCcEEecccCcccc
Q 019000 205 GIGIVPYSPLGRGL 218 (347)
Q Consensus 205 gi~v~a~spl~~G~ 218 (347)
||.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999887666553
No 101
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=51.92 E-value=2.4e+02 Score=27.66 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=57.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCc
Q 019000 129 LYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIG 207 (347)
Q Consensus 129 l~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~ 207 (347)
+.++-.|-+..+..+-++.+.+|++...|- +.|=|.++.+.+..+++...++++|......--....++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 456776654332112367777887765544 4455667889999999888888888875321111136899999999999
Q ss_pred EEecccC
Q 019000 208 IVPYSPL 214 (347)
Q Consensus 208 v~a~spl 214 (347)
+..++.+
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8876543
No 102
>PRK09061 D-glutamate deacylase; Validated
Probab=51.20 E-value=1.5e+02 Score=29.60 Aligned_cols=107 Identities=8% Similarity=0.047 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhC
Q 019000 44 GISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG 123 (347)
Q Consensus 44 ~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~ 123 (347)
..++++.|++.|+..|=+...|-.+.+...+-+.++...+....|.+.+..... .++.....++++.++...
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHHH
Confidence 677888999999999987666755556666666665444456666666542210 012222334444444333
Q ss_pred CCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCccc
Q 019000 124 VDYIDLYYQHRVDPS-VPIEDTIGELKMLVVEGKIK 158 (347)
Q Consensus 124 ~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~Ir 158 (347)
..-.-+.+.|-.... .+..+.++.+++++++|.--
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~V 278 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDV 278 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcE
Confidence 222346777764322 34577889999999998433
No 103
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=51.07 E-value=2e+02 Score=26.39 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---ccC-----CCCCchHHHHHHHHhcCC-CCCeEEEeeeecccCCCccccCCCCHH
Q 019000 40 SEEDGISIIKHAFNKG-ITFFDT---ADV-----YGAHANEVLVGKVLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPE 109 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~G-in~~DT---A~~-----Yg~g~sE~~lG~~l~~~~-R~~v~i~tK~~~~~~~~~~~~~~~~~~ 109 (347)
+.++..+..+.+.+.| +..|+- +++ |..+.+.+.+-+.++... .-++-|..|+.... +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 6778888888888998 888875 221 122346677777776531 12577888886421 1
Q ss_pred HHHHHHHHHHhHhCCCcccEEE-ecCC--CCC--C------------C--HHHHHHHHHHHHHcCccceEecCCC-CHHH
Q 019000 110 YVRSCCEASLKRLGVDYIDLYY-QHRV--DPS--V------------P--IEDTIGELKMLVVEGKIKYIGLSEA-SPDT 169 (347)
Q Consensus 110 ~i~~~le~SL~rL~~d~iDl~~-lH~~--~~~--~------------~--~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~ 169 (347)
.+. .+-+.|+..|.|.|++.- ++.. +.. . + ..-.++.+.++++.=.|-=||+... +.+.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 233457778887776531 1111 000 0 0 0114566667766656888999886 7888
Q ss_pred HHHHhhcCCcceeeeeccccc-cc----hhhhHHHHHHHhCC
Q 019000 170 IRRAHAVHPITAVQMEWSLLT-RD----IEEEIIPLCRELGI 206 (347)
Q Consensus 170 l~~~~~~~~~~~vq~~~n~~~-~~----~~~~l~~~~~~~gi 206 (347)
..+++... .+.+|+-=-++. +. ...++-.++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88888754 688887433332 11 12566667777664
No 104
>PRK15108 biotin synthase; Provisional
Probab=50.54 E-value=2.2e+02 Score=26.84 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCC-CC-CchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVY-GA-HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y-g~-g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le 116 (347)
++.++..+..+.+.+.|++-|--.... +. ...-+.+-+.++..+...+.++.-.| ..+.+.++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G-----------~ls~e~l~---- 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLG-----------TLSESQAQ---- 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCC-----------cCCHHHHH----
Confidence 578888888888889999988432211 11 11224555555543222232222222 12333333
Q ss_pred HHHhHhCCCcccEEEecC------CCCCCCHHHHHHHHHHHHHcCccc
Q 019000 117 ASLKRLGVDYIDLYYQHR------VDPSVPIEDTIGELKMLVVEGKIK 158 (347)
Q Consensus 117 ~SL~rL~~d~iDl~~lH~------~~~~~~~~~~~~~l~~l~~~G~Ir 158 (347)
-|+..|+|++.+.+=-. ......+++.++.++.+++.|.--
T Consensus 141 -~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 141 -RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred -HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 36666777543321111 111235788999999999999633
No 105
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=50.43 E-value=2.8e+02 Score=27.88 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=67.9
Q ss_pred hHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCC----H
Q 019000 70 NEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP----I 141 (347)
Q Consensus 70 sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~----~ 141 (347)
+|+.|-+++++. +.+=++|.|-|. ++-|-..++...++++. .++++.++.+..... .
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC~--------------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~ 133 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSCT--------------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAA 133 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCcH--------------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHH
Confidence 555666676553 233346666553 23333444444445554 367999998865533 2
Q ss_pred HHHHHHHHH-HH-----------HcCccceEecCC------CCHHHHHHHhhcCCcceeee----------------ecc
Q 019000 142 EDTIGELKM-LV-----------VEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQM----------------EWS 187 (347)
Q Consensus 142 ~~~~~~l~~-l~-----------~~G~Ir~iGvS~------~~~~~l~~~~~~~~~~~vq~----------------~~n 187 (347)
+.++..+-+ +. +.+.|--||.++ .+..+++++++...+.++.+ .+|
T Consensus 134 ~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~n 213 (519)
T PRK02910 134 DETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFN 213 (519)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEE
Confidence 233333322 21 234588888764 23466777777655555443 223
Q ss_pred cccc-chhhhHHHHHH-HhCCcEEecccCc
Q 019000 188 LLTR-DIEEEIIPLCR-ELGIGIVPYSPLG 215 (347)
Q Consensus 188 ~~~~-~~~~~l~~~~~-~~gi~v~a~spl~ 215 (347)
+... .....+-++.+ +.|+.++...|++
T Consensus 214 ivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 214 VVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred EEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 2211 11123334333 5578887766764
No 106
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=49.90 E-value=2e+02 Score=26.09 Aligned_cols=131 Identities=19% Similarity=0.189 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---ccCCCC----CchHHHHHHHHhcCCC-CCeEEEeeeecccCCCccccCCCCHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDT---ADVYGA----HANEVLVGKVLKQLPR-KKIQLASKFGVVSMAPTSVIVKGTPEYV 111 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~----g~sE~~lG~~l~~~~R-~~v~i~tK~~~~~~~~~~~~~~~~~~~i 111 (347)
+.++..+..+.+.+.|+..|+. ++.... +...+.+.+.++...+ -++-|+.|++... +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 6678888999999999999984 333322 1245566666655311 1566888887532 44444
Q ss_pred HHHHHHHHhHhCCCcccEEEecCCCCC-------------C--------CH-HHHHHHHHHHHHcC--ccceEecCCC-C
Q 019000 112 RSCCEASLKRLGVDYIDLYYQHRVDPS-------------V--------PI-EDTIGELKMLVVEG--KIKYIGLSEA-S 166 (347)
Q Consensus 112 ~~~le~SL~rL~~d~iDl~~lH~~~~~-------------~--------~~-~~~~~~l~~l~~~G--~Ir~iGvS~~-~ 166 (347)
.+-++ .|+..|.|.| .+|.-... . .. .-.++.+.++++.= .|--||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i---~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGL---TAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEE---EEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44333 4667775554 44432100 0 00 12456666666653 5777777765 4
Q ss_pred HHHHHHHhhcCCcceeeee
Q 019000 167 PDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 167 ~~~l~~~~~~~~~~~vq~~ 185 (347)
.+.+.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 67777777643 5666654
No 107
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=49.84 E-value=2e+02 Score=26.09 Aligned_cols=109 Identities=7% Similarity=-0.040 Sum_probs=64.4
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCc-cCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCcc
Q 019000 23 KLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTA-DVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTS 101 (347)
Q Consensus 23 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~ 101 (347)
.||.+.|+....-|...+.....+-....+....|.+.-- ..|.. .+++.+-+|.++ ..+++..+.|+.......
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~-- 79 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITHQ-- 79 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccch--
Confidence 4666666654322222222222232334455557776533 35543 578888889886 789999999996543221
Q ss_pred ccCCCCH---HHHHHHHHHHHhHhCCCcccEEEecCCCCCC
Q 019000 102 VIVKGTP---EYVRSCCEASLKRLGVDYIDLYYQHRVDPSV 139 (347)
Q Consensus 102 ~~~~~~~---~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~ 139 (347)
+... ..+.+.+.+-++.|| +.+..+++--|....
T Consensus 80 ---~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 80 ---RRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred ---hhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 1122 345555555566777 689999999886543
No 108
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.55 E-value=2.6e+02 Score=27.22 Aligned_cols=108 Identities=10% Similarity=0.055 Sum_probs=55.6
Q ss_pred cCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhC-CCcccEEEecCCCC
Q 019000 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG-VDYIDLYYQHRVDP 137 (347)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~-~d~iDl~~lH~~~~ 137 (347)
-.|| .|+.|-+++++. +.+=++|.|-+....- -+++..-+++.-++.. ...+.++.+|.|+.
T Consensus 61 ~VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiI----------GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf 127 (417)
T cd01966 61 TILG---GGENLEEALDTLAERAKPKVIGLLSTGLTETR----------GEDIAGALKQFRAEHPELADVPVVYVSTPDF 127 (417)
T ss_pred EEEC---CHHHHHHHHHHHHHhcCCCEEEEECCCccccc----------ccCHHHHHHHHHhhccccCCCeEEEecCCCC
Confidence 4677 566666676553 3444667776643321 1123333322222210 01477889999876
Q ss_pred CCC----HHHHHHHHHH-H--------HHcCccceEecCCC---CHHHHHHHhhcCCcceee
Q 019000 138 SVP----IEDTIGELKM-L--------VVEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 138 ~~~----~~~~~~~l~~-l--------~~~G~Ir~iGvS~~---~~~~l~~~~~~~~~~~vq 183 (347)
... ++.++++|.+ + +..++|--||-++. +.++++++++...+.++.
T Consensus 128 ~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 128 EGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 532 2233444332 2 23556888875544 345666666665555443
No 109
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=49.27 E-value=1.9e+02 Score=25.50 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=25.7
Q ss_pred eeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 181 AVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 181 ~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
++==+||++++....++.+..++.|+.|+..
T Consensus 188 l~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 188 LLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 3334899999888889999999999999864
No 110
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=49.04 E-value=2.9e+02 Score=27.72 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=49.2
Q ss_pred cccEEEecCCCCCCC-H---HHHHHHHHH-H--------------HHcCccceEecCC------CCHHHHHHHhhcCCcc
Q 019000 126 YIDLYYQHRVDPSVP-I---EDTIGELKM-L--------------VVEGKIKYIGLSE------ASPDTIRRAHAVHPIT 180 (347)
Q Consensus 126 ~iDl~~lH~~~~~~~-~---~~~~~~l~~-l--------------~~~G~Ir~iGvS~------~~~~~l~~~~~~~~~~ 180 (347)
-++++.+|.|..... . +.+++.+-+ + ...++|--||.++ .+...++++++...+.
T Consensus 116 ~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~ 195 (513)
T CHL00076 116 DSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE 195 (513)
T ss_pred CCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCe
Confidence 368999999865532 1 222332222 1 1235688888774 3556777777765555
Q ss_pred eeee----------------eccccc-cchhhhHHHHHH-HhCCcEEecccCc
Q 019000 181 AVQM----------------EWSLLT-RDIEEEIIPLCR-ELGIGIVPYSPLG 215 (347)
Q Consensus 181 ~vq~----------------~~n~~~-~~~~~~l~~~~~-~~gi~v~a~spl~ 215 (347)
++.+ .+|+.. +.....+.++.+ +.|+.++...|++
T Consensus 196 vn~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 196 INQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 5422 233322 111133444444 4588887767764
No 111
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=48.79 E-value=2e+02 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHHHHcCccceEec--CCCCHHHHHHHhhcCCcce--eeeeccccccchhhhHHHHHHHhCCcEEeccc
Q 019000 148 LKMLVVEGKIKYIGL--SEASPDTIRRAHAVHPITA--VQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 148 l~~l~~~G~Ir~iGv--S~~~~~~l~~~~~~~~~~~--vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (347)
|++..++|+. .+|+ +..++..++.+.. ..+|+ +-++.++++...-..++..++..|+.++..-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~-~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAG-AGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHh-cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4455566775 3443 3335555544443 34554 45577776544334567777777777766543
No 112
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=48.55 E-value=2.1e+02 Score=25.84 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEE-EecCCCCC-CCHH-H---HHHHHHHHHHc-CccceEecCCCCHHHHHHHhhcCC
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLY-YQHRVDPS-VPIE-D---TIGELKMLVVE-GKIKYIGLSEASPDTIRRAHAVHP 178 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~-~lH~~~~~-~~~~-~---~~~~l~~l~~~-G~Ir~iGvS~~~~~~l~~~~~~~~ 178 (347)
.+++.+.+..++.+ .=|.++||+- .-.+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35666666655543 5688999993 22234322 2223 2 44555556555 43 37888999999999998753
Q ss_pred cceeeeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 179 ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 179 ~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
+. -+..+... ..++++.++++|..++.+.
T Consensus 97 -~i-INsis~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 -DI-INDVSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred -CE-EEECCCCC---CchhHHHHHHcCCcEEEEe
Confidence 32 22333332 3578999999999999853
No 113
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=48.53 E-value=1e+02 Score=27.12 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhh---cCCccee
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHA---VHPITAV 182 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~---~~~~~~v 182 (347)
++.+.. ..+-+.|.++|+++|.+- .|.......+.++.+.+.... .+-.+++......++..++ ...++.+
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 455544 445556999999999987 332222233455555555555 3344555555655655443 3445555
Q ss_pred eeeccccc--------------cchhhhHHHHHHHhCCcE
Q 019000 183 QMEWSLLT--------------RDIEEEIIPLCRELGIGI 208 (347)
Q Consensus 183 q~~~n~~~--------------~~~~~~l~~~~~~~gi~v 208 (347)
.+..+.-+ ...-.+.+.+++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 54443332 111257899999999998
No 114
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=48.50 E-value=2.9e+02 Score=27.46 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCch-HHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHAN-EVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s-E~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
+++-....++.|.++||..|=..+.-..-++ +..+. +.++. .-.+..+.+.-.. +.++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~--G~~~~~~i~yt~s-------p~~t~~y~~~~a~~- 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKT--GKEAQLCIAYTTS-------PVHTLNYYLSLVKE- 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHc--CCEEEEEEEEEeC-------CcCcHHHHHHHHHH-
Confidence 4566778899999999988876665553222 33333 33331 1122222222111 13456666666655
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHH-----HHHHHhhcCCcceeeeeccccccc-
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPD-----TIRRAHAVHPITAVQMEWSLLTRD- 192 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~-----~l~~~~~~~~~~~vq~~~n~~~~~- 192 (347)
+..+|. |.+.|-.........++.+.+..+++...+ -||+-.|+.. ....+++. ..+.+....+.+-..
T Consensus 172 l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieA-Gad~vD~ai~g~g~ga 246 (468)
T PRK12581 172 LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEA-GADRIDTALSPFSEGT 246 (468)
T ss_pred HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHc-CCCEEEeeccccCCCc
Confidence 556785 444554443334455666666666665443 4788666422 22233332 345555555544332
Q ss_pred ---hhhhHHHHHHHhCC
Q 019000 193 ---IEEEIIPLCRELGI 206 (347)
Q Consensus 193 ---~~~~l~~~~~~~gi 206 (347)
....++..++..|+
T Consensus 247 gN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 247 SQPATESMYLALKEAGY 263 (468)
T ss_pred CChhHHHHHHHHHhcCC
Confidence 11445555555544
No 115
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=48.04 E-value=92 Score=29.65 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEec
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQH 133 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH 133 (347)
.+.+.+.+.++..+ +|+.++|.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 36777777777664 4788888887765
No 116
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.86 E-value=2e+02 Score=28.27 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecC
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHR 134 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~ 134 (347)
.+.+.+++.++..+ .|+.++|++|.+.-
T Consensus 227 qT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 36777888877655 48999999998774
No 117
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.28 E-value=1.9e+02 Score=25.07 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCCCCC--chHHHHHHHHhcCCCCC--eEEEeeeecccCCCccccCC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTA----------DVYGAH--ANEVLVGKVLKQLPRKK--IQLASKFGVVSMAPTSVIVK 105 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~g--~sE~~lG~~l~~~~R~~--v~i~tK~~~~~~~~~~~~~~ 105 (347)
+.++..+..+.+.++|+..+|-- ..||.. ..-+.+-+.++.. |+. +-|+.|+...+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~~~~v~vk~r~~~~-------- 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAVPIPVTVKIRLGWD-------- 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhcCCCEEEEEeeccC--------
Confidence 67788888899999999998742 345531 1334455555442 221 456667643321
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCC--CHHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCccee
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV--PIEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~--~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~v 182 (347)
.. +...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++..+. +.+.+.++++....+.+
T Consensus 136 ~~-~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 136 DE-EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred Cc-hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 01 12222 2234555674 555667653211 01124566666666666666665554 56777777666556666
Q ss_pred eee
Q 019000 183 QME 185 (347)
Q Consensus 183 q~~ 185 (347)
++-
T Consensus 211 ~ig 213 (231)
T cd02801 211 MIG 213 (231)
T ss_pred EEc
Confidence 554
No 118
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=47.09 E-value=2.4e+02 Score=26.27 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCCCC--CchHHHHHHHHhcCCCC--CeEEEeeeecccCCCccccCC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTA----------DVYGA--HANEVLVGKVLKQLPRK--KIQLASKFGVVSMAPTSVIVK 105 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~--g~sE~~lG~~l~~~~R~--~v~i~tK~~~~~~~~~~~~~~ 105 (347)
+.++..+..+.+.+.|+..||.- ..+|. ..+-+.+.+.++.. |+ ++-|+.|+...+..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av-~~a~d~pv~vKiR~G~~~------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEV-VNAVDVPVTLKIRTGWAP------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHH-HHhcCCceEEEEEccccC-------
Confidence 67777777888888999999932 12221 12234455555442 22 34577777543211
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCC--HHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCccee
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP--IEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~--~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~v 182 (347)
+.... ..+-+-++..| +|.+.+|.-..... -..-|+.+.++++.=.|--||.... +++.++++++....+.+
T Consensus 147 -~~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 147 -EHRNC-VEIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred -CcchH-HHHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 11111 12233356667 46667786542211 1124777788888767888888775 78888888887778888
Q ss_pred eeecc
Q 019000 183 QMEWS 187 (347)
Q Consensus 183 q~~~n 187 (347)
|+-=-
T Consensus 222 miGR~ 226 (321)
T PRK10415 222 MIGRA 226 (321)
T ss_pred EEChH
Confidence 87533
No 119
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=47.08 E-value=1.8e+02 Score=27.91 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=70.8
Q ss_pred HHHHHHcCccceEecCCCC----HHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcE---EecccCccccCC
Q 019000 148 LKMLVVEGKIKYIGLSEAS----PDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGI---VPYSPLGRGLLG 220 (347)
Q Consensus 148 l~~l~~~G~Ir~iGvS~~~----~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v---~a~spl~~G~L~ 220 (347)
=.++.++=.||.+|+-..+ ...+.+.+...--+...+.+++-+.. -=.|-++|..| |.++||. |+.-
T Consensus 163 P~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA-----SicAiknGkSvDTSMGfTPLe-Gl~M 236 (396)
T COG0282 163 PYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA-----SICAIKNGKSVDTSMGFTPLE-GLMM 236 (396)
T ss_pred CHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch-----hhhhhhCCeeeccCCCCCccc-ceec
Confidence 3467888899999997654 33455555544336777788876652 11244677665 6688887 5555
Q ss_pred CCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCC-HHHHHHHHh
Q 019000 221 GKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTK-IKNLDENIG 298 (347)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~-~~~l~enl~ 298 (347)
|.++.+ +. + ..+--++++.|+|..|+.- .|.+..-..=|.|.++ ...++++.+
T Consensus 237 GTRsGd-iD-----------------P-----~ii~~l~~~~~~s~~~i~~--~LNkkSGllGlSg~ssD~R~l~~~~~ 290 (396)
T COG0282 237 GTRSGD-ID-----------------P-----GIILYLMEQEGMSAEEIDT--LLNKKSGLLGLSGLSSDMRDLEEAAA 290 (396)
T ss_pred cCCCCC-CC-----------------h-----HHHHHHHHhcCCCHHHHHH--HHhhhccccccccccchHHHHHHHhc
Confidence 443221 11 0 2567778888999998654 3444322344556333 555555554
No 120
>PTZ00413 lipoate synthase; Provisional
Probab=47.03 E-value=2.7e+02 Score=26.84 Aligned_cols=158 Identities=15% Similarity=0.230 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCC----CCchHHHHHHHHhcCC--CCCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYG----AHANEVLVGKVLKQLP--RKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----~g~sE~~lG~~l~~~~--R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
+|.++..++-+.+.+.|++|+=.+..-+ +|..+. +-+.++..+ ..++.|..=++-.. .+.+
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf~---------g~~e--- 243 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDFH---------GDLK--- 243 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCccc---------cCHH---
Confidence 5888888899999999998764333322 122333 334554421 22455554443221 1333
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCC-----------CCCHHHHHHHHHHHHHc--Cccc-----eEecCCCCHHHHHHHh
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDP-----------SVPIEDTIGELKMLVVE--GKIK-----YIGLSEASPDTIRRAH 174 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~-----------~~~~~~~~~~l~~l~~~--G~Ir-----~iGvS~~~~~~l~~~~ 174 (347)
+|++|.---+|.| -|+... ...+++.++.|+..++. |.|. -+|+..-..+.++-+.
T Consensus 244 -----~l~~L~eAG~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 244 -----SVEKLANSPLSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred -----HHHHHHhcCCCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 3333333334433 355421 23578889999988874 3332 2565554444333332
Q ss_pred hc--CCcceeeeeccccc-------------cchhhhHHHHHHHhCCcEEecccCcc
Q 019000 175 AV--HPITAVQMEWSLLT-------------RDIEEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 175 ~~--~~~~~vq~~~n~~~-------------~~~~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
+. ..++++.+. |++. +.....+-+.+.+.|...++.+||-+
T Consensus 318 dLrelGVDivtIG-QYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLG-QYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeec-cccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 22 333433320 1111 12225677888888999999888864
No 121
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=45.78 E-value=83 Score=28.30 Aligned_cols=85 Identities=24% Similarity=0.161 Sum_probs=56.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHhC
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELG 205 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~g 205 (347)
.++.++-.|-+ .+-++.+.++. .+.=-+.|=|-++.+.+.++++...++++|+.....-. ..-..+...|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 35555555543 23455666665 33333566666777788888888888999888665322 12368999999999
Q ss_pred CcEEecccCcc
Q 019000 206 IGIVPYSPLGR 216 (347)
Q Consensus 206 i~v~a~spl~~ 216 (347)
+.++..+-+..
T Consensus 228 i~~~~~~~~es 238 (263)
T cd03320 228 IPAVVSSALES 238 (263)
T ss_pred CCEEEEcchhh
Confidence 99988654443
No 122
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=45.40 E-value=2e+02 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=25.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHH
Q 019000 126 YIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTI 170 (347)
Q Consensus 126 ~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l 170 (347)
.+|.++||..++ .+..+.+.+......|+.+|++.+....+
T Consensus 73 ~~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378899998642 12334444333356899999998765443
No 123
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=45.06 E-value=1.4e+02 Score=26.95 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=52.9
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCccCCCC-CchH---HHHHHHHhcC-CCCCeEEEeeeecccCCCccccCCCCHHHHHH
Q 019000 40 SEE-DGISIIKHAFNKGITFFDTADVYGA-HANE---VLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (347)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE---~~lG~~l~~~-~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (347)
+.+ +..++.+.|.+.|..|+=|+..|+. |.+. ++|-+.+++. ...+ +--|.... =.+.+...+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG---------Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG---------VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC---------CCCHHHHHH
Confidence 445 5888999999999999999999974 4443 3444444321 0122 33344211 127888999
Q ss_pred HHHHHHhHhCCCccc
Q 019000 114 CCEASLKRLGVDYID 128 (347)
Q Consensus 114 ~le~SL~rL~~d~iD 128 (347)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 999999999988876
No 124
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=44.97 E-value=2.6e+02 Score=27.83 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-ccceEecCC----C--CHHHHHHHhhcCC
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSE----A--SPDTIRRAHAVHP 178 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~Ir~iGvS~----~--~~~~l~~~~~~~~ 178 (347)
.+++.+.+.++...++.|+.++ .+...+...+.+.+.+.++++++.| .--.++++. . +.+.++ ++....
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~-~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILH-LYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHH-HHHHhC
Confidence 4889999999998888886553 3333333344556677788888887 322344332 1 334343 333334
Q ss_pred cceeeeecccccc--------c----hhhhHHHHHHHhCCcEEec
Q 019000 179 ITAVQMEWSLLTR--------D----IEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 179 ~~~vq~~~n~~~~--------~----~~~~l~~~~~~~gi~v~a~ 211 (347)
+..+++..--.++ . ...+.+..|+++||.+.+.
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 4444333222221 1 1257888999999987553
No 125
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=44.93 E-value=2.9e+02 Score=26.54 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-eEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCC-------CccccCCCCHHH
Q 019000 39 VSEEDGISIIKHAFNKGIT-FFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMA-------PTSVIVKGTPEY 110 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin-~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~-------~~~~~~~~~~~~ 110 (347)
.+.++-.+=+..|.+.|.. ..|-+. .| .-..+.+++-+ .+++.....+ ......+.+.+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Gg---dl~eiR~~ii~--------~s~vPvGTVPIYqA~~~~~~~~~~~t~d~ 142 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GG---DLHEIREWIIR--------NSPVPVGTVPIYQALEEVNGKVEDLTEDD 142 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CC---CHHHHHHHHHh--------cCCCCcCCchHHHHHHHHhcchhhCCHHH
Confidence 3666667778899999965 446553 24 44445555432 1222211110 001123567777
Q ss_pred HHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccc
Q 019000 111 VRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLT 190 (347)
Q Consensus 111 i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~ 190 (347)
+...+++..+ +-+|.+-+|.- -..+.+..+++.|++ .|+-+-...-+...+-.. ..=|++.
T Consensus 143 ~~~~v~~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~------~~ENply 203 (432)
T COG0422 143 FFDTVEKQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHN------HKENPLY 203 (432)
T ss_pred HHHHHHHHHH----hCCcEEEeehh-------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHc------CCcCchh
Confidence 7777776665 56888899963 367888889999975 455443333332222111 1224555
Q ss_pred cchhhhHHHHHHHhCCcEEe
Q 019000 191 RDIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a 210 (347)
.. ..++++.|+++.+.+.-
T Consensus 204 ~~-fd~lleI~k~yDvtlSL 222 (432)
T COG0422 204 EH-FDELLEIFKEYDVTLSL 222 (432)
T ss_pred hh-HHHHHHHHHHhCeeeec
Confidence 44 36899999999988743
No 126
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=44.68 E-value=1.1e+02 Score=26.88 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCC-CCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYG-AHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
+.++..++.+.+.+.|..|+=|+..|+ .|.+.+.+....+.. +.++ ..|..... .+.+...+-++.-
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~--~IKasGGI---------rt~~~a~~~i~aG 201 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRV--GVKASGGI---------RTLEDALAMIEAG 201 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCc--eEEeeCCc---------CCHHHHHHHHHcC
Confidence 778889999999999999999999985 456666665544432 2222 22332111 1566677766666
Q ss_pred HhHhCCC
Q 019000 119 LKRLGVD 125 (347)
Q Consensus 119 L~rL~~d 125 (347)
-.|+||.
T Consensus 202 A~riGtS 208 (221)
T PRK00507 202 ATRLGTS 208 (221)
T ss_pred cceEccC
Confidence 6666654
No 127
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.50 E-value=1.8e+02 Score=27.66 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCC---CCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCccee
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP---SVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~---~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~v 182 (347)
++.+ -+..+-+.|.++|+++|++-..-.|.. ..+.+++++.+.. ...++..++. .+...++++++.. .+.+
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g-~~~v 138 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAG-AKEV 138 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcC-cCEE
Confidence 4444 455666679999999999875444421 1233455555543 2234544553 4788888888763 2333
Q ss_pred eeecccc--------ccchh------hhHHHHHHHhCCcEEe
Q 019000 183 QMEWSLL--------TRDIE------EEIIPLCRELGIGIVP 210 (347)
Q Consensus 183 q~~~n~~--------~~~~~------~~l~~~~~~~gi~v~a 210 (347)
.+.++.- +...+ .+++++++++|+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3332211 11111 4789999999998853
No 128
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=44.40 E-value=3e+02 Score=26.56 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCCC----chHHHHHHHHhcC-----CCCCeEEEeeeecccCCCccccCCCCHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGAH----ANEVLVGKVLKQL-----PRKKIQLASKFGVVSMAPTSVIVKGTPE 109 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g----~sE~~lG~~l~~~-----~R~~v~i~tK~~~~~~~~~~~~~~~~~~ 109 (347)
.+..++.+++..|++.| ....|+.+ .+-+.+.+.+.+. ..++||+++-+
T Consensus 78 ~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC----------------- 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC----------------- 135 (447)
T ss_pred cCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc-----------------
Confidence 36678889999999988 34577653 3566777776432 67888888765
Q ss_pred HHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC---CC--CHHHHHHHhhcCCcc-eee
Q 019000 110 YVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS---EA--SPDTIRRAHAVHPIT-AVQ 183 (347)
Q Consensus 110 ~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS---~~--~~~~l~~~~~~~~~~-~vq 183 (347)
.+++|-.+..|-.-.-.+++ -+|. -++.++..... .=.||++-+= +| +...++.+++..-+. ++-
T Consensus 136 --~qAIe~~i~~LA~p~aNILl-PrPG--fp~Y~~~a~~~----~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi 206 (447)
T KOG0259|consen 136 --SQAIELAISSLANPGANILL-PRPG--FPLYDTRAIYS----GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI 206 (447)
T ss_pred --hHHHHHHHHHhcCCCCceec-CCCC--CchHHHhhhhc----CceeEeecccCcccceechHHHHHhhccCeeEEEEe
Confidence 24445455555433344433 2232 23332222111 1134555442 22 344555555543222 222
Q ss_pred eecccc----ccchhhhHHHHHHHhCCcEEecccCccccCCC
Q 019000 184 MEWSLL----TRDIEEEIIPLCRELGIGIVPYSPLGRGLLGG 221 (347)
Q Consensus 184 ~~~n~~----~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 221 (347)
++-|+. ..+..+++.+.|+++||-|++=...+.-.+.+
T Consensus 207 NP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 207 NPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred CCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 333332 11223789999999999999855544433333
No 129
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.40 E-value=2.1e+02 Score=27.46 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=58.1
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCc----cceEecC--CCCHHHHHHH---hhcC------Ccceee
Q 019000 130 YYQHRVDPS-----------VPIEDTIGELKMLVVEGK----IKYIGLS--EASPDTIRRA---HAVH------PITAVQ 183 (347)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~----Ir~iGvS--~~~~~~l~~~---~~~~------~~~~vq 183 (347)
+-||.|++. -+++++++++.+..++.. +-|+=+. |.+.++..++ +... +..++.
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 679998642 357889999988765432 2233333 4556655554 4434 568999
Q ss_pred eeccccccc----h----hhhHHHHHHHhCCcEEecccCccc
Q 019000 184 MEWSLLTRD----I----EEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 184 ~~~n~~~~~----~----~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
++||+.... + -....+..+++||.+......+.-
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 999997531 1 146777788999999998877643
No 130
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=43.27 E-value=63 Score=26.36 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=35.1
Q ss_pred ccceEecCCCCHHHHHHHhhcCCcceeeeecc-ccccchhhhHHHHHHHhCCcE-EecccCc
Q 019000 156 KIKYIGLSEASPDTIRRAHAVHPITAVQMEWS-LLTRDIEEEIIPLCRELGIGI-VPYSPLG 215 (347)
Q Consensus 156 ~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n-~~~~~~~~~l~~~~~~~gi~v-~a~spl~ 215 (347)
+.--|.|.-.+.+.+..++....+|++.+.+. -.........+..|.++|+.+ +.|+|+-
T Consensus 24 ~~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred CceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 34445555566777777787777888887764 122223467899999999998 5688765
No 131
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=43.13 E-value=2.9e+02 Score=26.04 Aligned_cols=104 Identities=24% Similarity=0.246 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCC--------CCCCCHHHHHHHHHHHHHcCccceEecCC---CCHHHHHH
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRV--------DPSVPIEDTIGELKMLVVEGKIKYIGLSE---ASPDTIRR 172 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~--------~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~---~~~~~l~~ 172 (347)
+.++.+.+.+- -+.|.+.|+++|.+-+.-.. ....+..+.++.+.+.. ...+...+.. .+.+.++.
T Consensus 20 ~~f~~~~~~~i-~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRAI-ARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CccCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 35566665554 44599999999998532110 11122233334333222 3344444332 25677777
Q ss_pred HhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 173 AHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 173 ~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
+.+. .++.+-+..+.-.-..-.+.+++++++|..+...
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 7664 4566555544333223467899999999887664
No 132
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=43.05 E-value=86 Score=29.84 Aligned_cols=87 Identities=10% Similarity=0.169 Sum_probs=54.6
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHH-cCc---cceEecCC--CCHHHHHHH---hhcCCcceeeeecccc
Q 019000 130 YYQHRVDPS-----------VPIEDTIGELKMLVV-EGK---IKYIGLSE--ASPDTIRRA---HAVHPITAVQMEWSLL 189 (347)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~-~G~---Ir~iGvS~--~~~~~l~~~---~~~~~~~~vq~~~n~~ 189 (347)
+-||.+++. .+++++++++.++.+ .|+ |+++=+.+ .+.++++++ +...++.++-++||..
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668988642 236788888876544 442 44444443 344555444 4444567888999986
Q ss_pred ccc----hh----hhHHHHHHHhCCcEEecccCcc
Q 019000 190 TRD----IE----EEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 190 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 216 (347)
... +. ..+.++.+++|+.+......+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 531 11 3456677788999998877754
No 133
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=42.86 E-value=2.9e+02 Score=25.96 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEe--------c-CCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHH
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQ--------H-RVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRA 173 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~l--------H-~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~ 173 (347)
+.++.+.+.+ +-+.|.+.|+++|.+-.. . .+. ..+..+.++++.+....-++..+-+. ..+.+.++.+
T Consensus 19 ~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~-~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFS-AHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCC-CCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 3556665554 555699999999998521 1 111 12222333333333333333322222 1256777777
Q ss_pred hhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 174 HAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 174 ~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
.+. .++.+.+..+.-.-+.-.+.+++++++|..+...
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 664 4566665554333223367899999999877643
No 134
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=42.66 E-value=1.2e+02 Score=29.59 Aligned_cols=111 Identities=9% Similarity=0.005 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCeEeCcc---------CCCCCchHHHHHHHHhcCCCCCe---EEEeeeecccCCCccccCCCCHHHHHH
Q 019000 46 SIIKHAFNKGITFFDTAD---------VYGAHANEVLVGKVLKQLPRKKI---QLASKFGVVSMAPTSVIVKGTPEYVRS 113 (347)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~---------~Yg~g~sE~~lG~~l~~~~R~~v---~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (347)
+.++...++|+|.+.-.- ..|.+.+...+-++++......+ -+.-=+|.. ..+.+.+.+
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP---------~qt~e~~~~ 212 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP---------GQTHASWME 212 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC---------CCCHHHHHH
Confidence 555666667888774321 22334444444455543211112 122222322 347788888
Q ss_pred HHHHHHhHhCCCcccEEEecCCCCC------C-CHHH---HH-HHHHHHHHcCccceEecCCCCH
Q 019000 114 CCEASLKRLGVDYIDLYYQHRVDPS------V-PIED---TI-GELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 114 ~le~SL~rL~~d~iDl~~lH~~~~~------~-~~~~---~~-~~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
.++..+ +|+.++|.+|.+.-.... . +.++ .+ .+.+.|.+.|. +.+++|+|..
T Consensus 213 ~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 213 SLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred HHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 888766 589999999887632211 0 1122 22 34455677775 5599999864
No 135
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=42.20 E-value=3.5e+02 Score=26.66 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=56.3
Q ss_pred cCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC
Q 019000 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS 138 (347)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~ 138 (347)
-.|| .|..|-+++++. +.+=++|.|-+-...- .-+.+.+-+.++....+ ...+.++.++.|+..
T Consensus 72 ~VfG---g~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiI-------GDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~ 139 (455)
T PRK14476 72 TILG---GDENVEEAILNICKKAKPKIIGLCTTGLTETR-------GDDVAGALKEIRARHPE--LADTPIVYVSTPDFK 139 (455)
T ss_pred eEeC---CHHHHHHHHHHHHHhhCCCEEEEeCcchHhhh-------hccHHHHHHHHHhhccc--cCCCeEEEecCCCCC
Confidence 5777 677777777663 3344566665532211 01223333332222111 113678889988765
Q ss_pred CCH----HHHHHHHHH-HH--------HcCccceEecCCC---CHHHHHHHhhcCCcceee
Q 019000 139 VPI----EDTIGELKM-LV--------VEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 139 ~~~----~~~~~~l~~-l~--------~~G~Ir~iGvS~~---~~~~l~~~~~~~~~~~vq 183 (347)
... +.+++++.+ +. +.++|--||-+++ +.++++++++...+.++.
T Consensus 140 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 140 GALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPII 200 (455)
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEE
Confidence 332 233444332 22 3456888875443 566777777766665543
No 136
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=42.08 E-value=1e+02 Score=30.34 Aligned_cols=112 Identities=15% Similarity=0.245 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCeEeCc----c-----CCCCCchHHHHHHHHhcCC---CCCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 45 ISIIKHAFNKGITFFDTA----D-----VYGAHANEVLVGKVLKQLP---RKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 45 ~~~l~~A~~~Gin~~DTA----~-----~Yg~g~sE~~lG~~l~~~~---R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
.+.++...++|+|.+--+ . ..+.+.+...+-++++... -+.+-+.--+|.. ..+.+.+.
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP---------gqt~e~~~ 221 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLP---------KQTKESFA 221 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC---------CCCHHHHH
Confidence 355666666788877433 1 2232333333334554321 1122222223322 34788888
Q ss_pred HHHHHHHhHhCCCcccEEEe-cCCC----------CCC-CHHH---HHH-HHHHHHHcCccceEecCCCCH
Q 019000 113 SCCEASLKRLGVDYIDLYYQ-HRVD----------PSV-PIED---TIG-ELKMLVVEGKIKYIGLSEASP 167 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~l-H~~~----------~~~-~~~~---~~~-~l~~l~~~G~Ir~iGvS~~~~ 167 (347)
+.++..++ |+.++|.+|.+ +.|. ... +.++ .+. +.+.|.+.|. ..+++|+|..
T Consensus 222 ~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 222 KTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred HHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 88886554 89999999877 2221 001 1222 222 3444566675 5699999864
No 137
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=42.07 E-value=3e+02 Score=25.94 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=47.9
Q ss_pred CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEE-EecC-CCCC----CCHHHHHHHHHHHHHcCc
Q 019000 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLY-YQHR-VDPS----VPIEDTIGELKMLVVEGK 156 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~-~lH~-~~~~----~~~~~~~~~l~~l~~~G~ 156 (347)
..++.|..|++......+ ..+.+... .+-+-|+.+|+|+|++- ..|. +... .+........+++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 356677777764321110 12444332 33345677787777762 2232 1111 011112333455555545
Q ss_pred cceEecCCC-CHHHHHHHhhcCCcceeee
Q 019000 157 IKYIGLSEA-SPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 157 Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~ 184 (347)
|-=++.... +++.++++++....|.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 555555443 6777777777666666654
No 138
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=41.77 E-value=72 Score=31.57 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCeEe--CccCC---C-----CCchHHHHHHHHhcC---CCCCeEEEeeeecccCCCc---------ccc
Q 019000 46 SIIKHAFNKGITFFD--TADVY---G-----AHANEVLVGKVLKQL---PRKKIQLASKFGVVSMAPT---------SVI 103 (347)
Q Consensus 46 ~~l~~A~~~Gin~~D--TA~~Y---g-----~g~sE~~lG~~l~~~---~R~~v~i~tK~~~~~~~~~---------~~~ 103 (347)
+-.+...+.|+..+- ||-.| | .|.-|.++..+=+.. .+..+|+++-+|.-.+... ...
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 455666777887653 55444 2 144555554433332 4667888887765433211 001
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV 176 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~ 176 (347)
...++..|+ +|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--++.++++.+.
T Consensus 187 vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 187 VEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred EEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 223444444 57888999853 356899999999999999999999998888888888875
No 139
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.58 E-value=69 Score=28.75 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=34.3
Q ss_pred hhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCC
Q 019000 195 EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCT 265 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 265 (347)
...+++|+..|...+...|...|... ...+.+....+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 56889999999999887765433100 00122344556778888888898863
No 140
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=41.47 E-value=1.9e+02 Score=27.25 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCccCCCCCchHHHHHHHHhcCC-CCCeEEEeeeecccCCCccccCCCCHHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKG-ITFFDTADVYGAHANEVLVGKVLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-in~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le 116 (347)
.+.++..+.-+.|-+.| .++...|..+|.|+.=..+-++++... --.+-+..-+| ..+.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-----------~l~~eq~----- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-----------MLTEEQA----- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-----------CCCHHHH-----
Confidence 46777888888888999 888888888863344444445554321 11122222222 1233333
Q ss_pred HHHhHhCCCcccEEEecCCCC----------CCCHHHHHHHHHHHHHcCccce----EecCCCCHHHHHHHhhcCCcc-e
Q 019000 117 ASLKRLGVDYIDLYYQHRVDP----------SVPIEDTIGELKMLVVEGKIKY----IGLSEASPDTIRRAHAVHPIT-A 181 (347)
Q Consensus 117 ~SL~rL~~d~iDl~~lH~~~~----------~~~~~~~~~~l~~l~~~G~Ir~----iGvS~~~~~~l~~~~~~~~~~-~ 181 (347)
+-|+.-|+|+. -|+.+. ...+++-++.++.+++.|.=-. +|+.+-..+.++-+......+ +
T Consensus 148 ~~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 34677787753 465543 3457899999999999886332 344444444444444433333 5
Q ss_pred eeeeccccccc
Q 019000 182 VQMEWSLLTRD 192 (347)
Q Consensus 182 vq~~~n~~~~~ 192 (347)
-.+++|.+++.
T Consensus 224 dsVPIn~l~P~ 234 (335)
T COG0502 224 DSVPINFLNPI 234 (335)
T ss_pred CeeeeeeecCC
Confidence 66788887763
No 141
>PRK05414 urocanate hydratase; Provisional
Probab=41.46 E-value=74 Score=31.62 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCeEe--CccCC---C-----CCchHHHHHHHHhcC---CCCCeEEEeeeecccCCCc---------ccc
Q 019000 46 SIIKHAFNKGITFFD--TADVY---G-----AHANEVLVGKVLKQL---PRKKIQLASKFGVVSMAPT---------SVI 103 (347)
Q Consensus 46 ~~l~~A~~~Gin~~D--TA~~Y---g-----~g~sE~~lG~~l~~~---~R~~v~i~tK~~~~~~~~~---------~~~ 103 (347)
+-.+...+.|+..+- ||-.| | .|.-|.++..+=+.. .+..+|+++=+|.-.+... ...
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 445566677876553 55444 2 144555554433332 4677888888775433211 001
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV 176 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~ 176 (347)
...++..|+ +|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--++.++++++.
T Consensus 196 vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 196 VEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 223444444 58888999853 356899999999999999999999998888888888776
No 142
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=41.12 E-value=2.1e+02 Score=23.79 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCC-CeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRK-KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~-~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
+.+...++++.+.+.|++-+-+.. ..+-.+.+. ..+ ++-|..+++..... ...+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 678899999999999999876553 333333333 234 67777777654211 1134444555444
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE 154 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (347)
.++|.|.+.+..-+........+++.+.++++.+.
T Consensus 75 -~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 45576555543222111111134455555555443
No 143
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=40.64 E-value=2.1e+02 Score=23.72 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=53.8
Q ss_pred EecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcC--Ccceeeeeccccccc-----hhhhHHHHHHH
Q 019000 131 YQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVH--PITAVQMEWSLLTRD-----IEEEIIPLCRE 203 (347)
Q Consensus 131 ~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~--~~~~vq~~~n~~~~~-----~~~~l~~~~~~ 203 (347)
|+..|... .-+++++...+=-+++-|++|-|.+.+.....++++.. .+.++-+.|+.-... .+.++-+..++
T Consensus 3 yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 3 YFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred cccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 44444332 33566666656566777899888766555555555542 245666666654432 34688899999
Q ss_pred hCCcEEecccCccc
Q 019000 204 LGIGIVPYSPLGRG 217 (347)
Q Consensus 204 ~gi~v~a~spl~~G 217 (347)
+|..|..-|-.-+|
T Consensus 82 rGa~v~~~sHalSg 95 (186)
T COG1751 82 RGAKVLTQSHALSG 95 (186)
T ss_pred cCceeeeehhhhhc
Confidence 99999886655444
No 144
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.31 E-value=3.2e+02 Score=26.05 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=56.2
Q ss_pred ecCCCCC-----------CCHHHHHHHHHHHH-HcCc---cceEecCCC--CHHHHHHHhh---cCCcceeeeecccccc
Q 019000 132 QHRVDPS-----------VPIEDTIGELKMLV-VEGK---IKYIGLSEA--SPDTIRRAHA---VHPITAVQMEWSLLTR 191 (347)
Q Consensus 132 lH~~~~~-----------~~~~~~~~~l~~l~-~~G~---Ir~iGvS~~--~~~~l~~~~~---~~~~~~vq~~~n~~~~ 191 (347)
||.+++. .+++++++++..+. +.|+ |+++=+..+ +.++++++.+ ..+..++-++||....
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 8988653 24567888887554 4454 666666644 5666555543 3456889999998753
Q ss_pred c----hh----hhHHHHHHHhCCcEEecccCccc
Q 019000 192 D----IE----EEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 192 ~----~~----~~l~~~~~~~gi~v~a~spl~~G 217 (347)
. +. ....+..+++||.+......+.-
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 1 11 34556677889999888777643
No 145
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=39.90 E-value=3.3e+02 Score=25.66 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCC----------------C--chHHHHHHHHhcCCCCCeEEEeeeecccCCCc
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGA----------------H--ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPT 100 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g--~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~ 100 (347)
++.+.-.++.+.|-+.|+-+|=|--.+.. | ....+|-...+ .-+.++++|=+.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 46777788999999999988865433321 1 12233333333 234677776553
Q ss_pred cccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC-CCHHH-HHHHHHHHHHcCccceEecCCCCHHHHH
Q 019000 101 SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIED-TIGELKMLVVEGKIKYIGLSEASPDTIR 171 (347)
Q Consensus 101 ~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~-~~~~~-~~~~l~~l~~~G~Ir~iGvS~~~~~~l~ 171 (347)
+-+.+.++++.-.+ =|. .|+.+||+...- .+.++ -+..|..|.+.= ---||+|.|+..-+.
T Consensus 158 ------~~~ei~~av~~~r~-~g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a 220 (347)
T COG2089 158 ------TIEEIEEAVAILRE-NGN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILA 220 (347)
T ss_pred ------cHHHHHHHHHHHHh-cCC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhH
Confidence 44566676664433 333 399999987432 44444 355555555543 446999999876443
No 146
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=39.77 E-value=3.5e+02 Score=26.03 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCCCC--CchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHH
Q 019000 42 EDGISIIKHAFNKGITFFDTADVYGA--HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (347)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL 119 (347)
++..++++.|++.|+.-|=+...|.. ..++..+-+.++...+-...|.+.+-... ....+.+.+.++-+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a- 237 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG- 237 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH-
Confidence 34567788889999988866655643 45677777676543333555655543221 11223334433333
Q ss_pred hHhCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCc
Q 019000 120 KRLGVDYIDLYYQHRVDPS----VPIEDTIGELKMLVVEGK 156 (347)
Q Consensus 120 ~rL~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ 156 (347)
++.| .=++..|-.... ....++++.+++++++|.
T Consensus 238 ~~~g---~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 238 RETG---RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred HHhC---CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 2334 335666754332 234566777777777764
No 147
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=39.63 E-value=3.1e+02 Score=25.34 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~ 185 (347)
+++.+++.++..++ .+-+.+--+-++......+.+.....++.+++.|.--.+=++.. +...+..++.....+.+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 56777777777664 33222322334443333345666777778888887655555543 23344444432222211111
Q ss_pred ccccccchhhhHHHHHHHhCCcEEecccCc
Q 019000 186 WSLLTRDIEEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 186 ~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 215 (347)
+++ .. ..+.++..+++||.+.. .|..
T Consensus 217 ~~l-~~--~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 217 VRA-LE--DPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hhh-cc--CHHHHHHHHHcCceEEE-CCcc
Confidence 111 11 24689999999998744 4544
No 148
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=39.41 E-value=65 Score=31.48 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred CchHHHHHHHHhcC---CCCCeEEEeeeecccCCCc-------c--ccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCC
Q 019000 68 HANEVLVGKVLKQL---PRKKIQLASKFGVVSMAPT-------S--VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRV 135 (347)
Q Consensus 68 g~sE~~lG~~l~~~---~R~~v~i~tK~~~~~~~~~-------~--~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~ 135 (347)
|.=|.++..+-+.. .+.++++++-.|.-.+..+ . .....+...|. +||.+.|+|.
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~-------~Rl~t~y~d~------ 214 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRID-------KRLRTGYLDE------ 214 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHH-------HHHhcchhhh------
Confidence 34455554444332 5677888887765432211 0 01122333333 5788899984
Q ss_pred CCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc-CCccee
Q 019000 136 DPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-HPITAV 182 (347)
Q Consensus 136 ~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~-~~~~~v 182 (347)
....++|+++..++..++|+-..||+-.--++.++++++. ..+|++
T Consensus 215 -~a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 215 -IAETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred -hcCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 3456899999999999999999999998888888888876 344544
No 149
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=39.27 E-value=3e+02 Score=24.98 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCCCCCchHHHH--HHHHhcC-CCCCe-EEEeeeecccCCCccccCCCCHHHHHHHHHH
Q 019000 42 EDGISIIKHAFNKGITFFDTADVYGAHANEVLV--GKVLKQL-PRKKI-QLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~l--G~~l~~~-~R~~v-~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~ 117 (347)
+...+.++..-+.|+.+|..++.=|.+..+..+ ...|++. .-+-+ .++.. +.++..+...+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-------------~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-------------GATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-------------CCCHHHHHHHHHH
Confidence 445556666668899999988765533334333 3334321 11111 12221 3366667777664
Q ss_pred HHhHhCCCcccEEEecCCCC-------CCCHHHHHHHHHHHHHcCccceEecCCCC--------H-HHHHHHhhc----C
Q 019000 118 SLKRLGVDYIDLYYQHRVDP-------SVPIEDTIGELKMLVVEGKIKYIGLSEAS--------P-DTIRRAHAV----H 177 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~-------~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~--------~-~~l~~~~~~----~ 177 (347)
. ..+|++. ++.|-...+ ...+..+.+.++.+++..---.||+..++ . +.++++... .
T Consensus 82 ~-~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA 158 (272)
T TIGR00676 82 Y-RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGA 158 (272)
T ss_pred H-HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 7777442 232332211 12233455555555554223477776532 1 233333322 3
Q ss_pred CcceeeeeccccccchhhhHHHHHHHhCCcE
Q 019000 178 PITAVQMEWSLLTRDIEEEIIPLCRELGIGI 208 (347)
Q Consensus 178 ~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v 208 (347)
.+-+-|.-|+. ..-.++++.|++.||.+
T Consensus 159 ~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 159 DYAITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred CeEeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 35555666654 22367889999998775
No 150
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=38.71 E-value=3.3e+02 Score=25.31 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=64.5
Q ss_pred HHhHhCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHcCccc-eEecCCC---CHHHHHHHhhcCCc-ceeeeecc
Q 019000 118 SLKRLGVDYIDLYYQHRVDP-----SVPIEDTIGELKMLVVEGKIK-YIGLSEA---SPDTIRRAHAVHPI-TAVQMEWS 187 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~---~~~~l~~~~~~~~~-~~vq~~~n 187 (347)
..++.| .|++-+|-... +.+..|+.+.|+++.+.=++- -||=|.. +++.|+++.+...= .+.....|
T Consensus 159 ~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSan 235 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASAN 235 (403)
T ss_pred HHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccc
Confidence 345677 57777886543 256789999999988776654 4677754 67888888776432 23333344
Q ss_pred ccccchhhhHHHHHHHhCCcEEecccCcc
Q 019000 188 LLTRDIEEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 188 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
+ +.+ ...+.+.+.++|=.|++|+++.-
T Consensus 236 l-dlD-y~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 236 L-DLD-YERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred c-ccC-HHHHHHHHHhcCceEEEeeccCh
Confidence 3 222 26799999999999999998863
No 151
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=38.32 E-value=3.7e+02 Score=25.88 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-----------hHhCCCcccEEEecCCCCC-----CCHHHHHHHHHHHHH-cCccceEecC---CCCHH
Q 019000 109 EYVRSCCEASL-----------KRLGVDYIDLYYQHRVDPS-----VPIEDTIGELKMLVV-EGKIKYIGLS---EASPD 168 (347)
Q Consensus 109 ~~i~~~le~SL-----------~rL~~d~iDl~~lH~~~~~-----~~~~~~~~~l~~l~~-~G~Ir~iGvS---~~~~~ 168 (347)
+.+++.++... +.++ +|++.||....+ .+.++..+..++..+ .+.=--|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666654 4555 788888875432 234456666666533 2222223323 45788
Q ss_pred HHHHHhhcCCc-ceeeeeccccccchhhhHHHHHHHhCCcEEecccCccc
Q 019000 169 TIRRAHAVHPI-TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 169 ~l~~~~~~~~~-~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
.++++++...= ..+-..-|.=+ -...+.+.|+++|..+++++|..-|
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 89888776321 22322223221 1368999999999999999987644
No 152
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=37.39 E-value=3.5e+02 Score=25.23 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHc-CCCeEe-CccCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHH
Q 019000 40 SEEDGISIIKHAFNK-GITFFD-TADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~D-TA~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (347)
+.++..++++...+. ||+.+- |.-.-- -.+...+-+.++.. ..+.+-|.|+.... .+..+..
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl-~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit~ 187 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPL-VLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVTP 187 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcc-cCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcCH
Confidence 556777777776654 777542 110000 01223333333321 12334566654322 2333444
Q ss_pred HHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCc
Q 019000 114 CCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK 156 (347)
Q Consensus 114 ~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ 156 (347)
.+-+.|++.|.. ..+-+|...+..-.+++.++++.|++.|.
T Consensus 188 ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 188 ALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 555566666632 34677765443334678888888888884
No 153
>PRK06256 biotin synthase; Validated
Probab=37.29 E-value=3.5e+02 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHcCCCe
Q 019000 39 VSEEDGISIIKHAFNKGITF 58 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~ 58 (347)
.+.++..+.++.+.+.|+..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~ 110 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGT 110 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCE
Confidence 47888999999999999853
No 154
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=1.2e+02 Score=25.15 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeee-ecccCCCccccCCCCHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKF-GVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~-~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
+++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =++++.|-- |.... +...+.+.+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHHH
Confidence 5555677788999999999999999983 43333333332 1 235555543 33221 233456677788
Q ss_pred HhHhCCC
Q 019000 119 LKRLGVD 125 (347)
Q Consensus 119 L~rL~~d 125 (347)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 8888843
No 155
>PF14502 HTH_41: Helix-turn-helix domain
Probab=37.17 E-value=32 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHhCCCC
Q 019000 252 YARVENLAKRNKCT--PAQLSLAWLLRQGDD 280 (347)
Q Consensus 252 ~~~l~~ia~~~g~s--~~q~al~w~l~~~~v 280 (347)
++.+.++++++++| ..|-||+++-..+.|
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI 36 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAI 36 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcE
Confidence 34788999999988 689999999888854
No 156
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=37.02 E-value=1.7e+02 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecC
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHR 134 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~ 134 (347)
..+.+.+++.++..++ |+.++|.+|.+.-
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i 201 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTI 201 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEE
Confidence 3477889999998886 8999999998873
No 157
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=36.51 E-value=3.5e+02 Score=25.05 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---------cCCCCC---chHHHHHHHHhcC-CCCCeEEEeeeecccCCCccccCCC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTA---------DVYGAH---ANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA---------~~Yg~g---~sE~~lG~~l~~~-~R~~v~i~tK~~~~~~~~~~~~~~~ 106 (347)
+.++..+..+.+.+.|+..||-- ..||+. ...+.+.+.++.. .+-.+-|+.|+...+..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 77888888889999999988852 123211 1235666666552 12235678887543211
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCC--CHHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV--PIEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~--~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq 183 (347)
+...+ ..+-+.|+..|. |.+.+|...... .-...|+.+.++++.=.|--||.... +.+.+.++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11111 234445667775 555567542211 11235777777777766777777764 788888888777788888
Q ss_pred eecccc
Q 019000 184 MEWSLL 189 (347)
Q Consensus 184 ~~~n~~ 189 (347)
+---++
T Consensus 221 igR~~l 226 (319)
T TIGR00737 221 IGRGAL 226 (319)
T ss_pred EChhhh
Confidence 754444
No 158
>PRK06740 histidinol-phosphatase; Validated
Probab=36.39 E-value=3.7e+02 Score=25.24 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=30.6
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCCC-----C--------CH----HHHHHHHHHHHHcCccceEec
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDPS-----V--------PI----EDTIGELKMLVVEGKIKYIGL 162 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~~-----~--------~~----~~~~~~l~~l~~~G~Ir~iGv 162 (347)
..+++.|+....||+ +.-+|..+.. . +. +.-++.+.++.+.|.+..||=
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgH 221 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAH 221 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 345556666778887 7888875421 0 11 123567777888888766663
No 159
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.23 E-value=3.1e+02 Score=24.36 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=48.6
Q ss_pred hHhCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeeeccccccc-hhhh
Q 019000 120 KRLGVDYIDLYYQHRVDPSV-PIEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRD-IEEE 196 (347)
Q Consensus 120 ~rL~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~-~~~~ 196 (347)
..+| +|-+.+|..+... .-.--|+.+.++.+.-.+.-|.-... +.+.+.++.+...++.+.+-=-+.... ...+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 4455 5666777654321 01113566666666555666655543 677888877765565554422222211 1257
Q ss_pred HHHHHHHhCCcE
Q 019000 197 IIPLCRELGIGI 208 (347)
Q Consensus 197 l~~~~~~~gi~v 208 (347)
+.+.|++.||.+
T Consensus 240 ~~~~~~~~~~~~ 251 (253)
T PRK02083 240 LKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHCCCcc
Confidence 889999988864
No 160
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=36.10 E-value=4.7e+02 Score=26.34 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=73.1
Q ss_pred ccCCCCCchHHHHHHHH----hcCC-CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCC
Q 019000 62 ADVYGAHANEVLVGKVL----KQLP-RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVD 136 (347)
Q Consensus 62 A~~Yg~g~sE~~lG~~l----~~~~-R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~ 136 (347)
.-.|| .|+.|-++| +..+ .+-++|.|-+.... --++|..-+++.-++. .-+.++.+|.|+
T Consensus 106 diVfG---Ge~kL~~~I~ea~~~~~~p~~I~V~tTC~t~l----------IGDDi~av~k~~~~~~--~~~pVi~v~tpG 170 (513)
T TIGR01861 106 HVVFG---AEKLLKQNIIEAFKAFPHIKRMTIYQTCATAL----------IGDDIAAIAKEVMEEM--PDVDIFVCNSPG 170 (513)
T ss_pred ceEeC---cHHHHHHHHHHHHHhCCCCCeEEEEccCchhh----------ccCCHHHHHHHHHHhc--CCCcEEEEeCCC
Confidence 35677 566444444 4333 45578888775432 1233444444443333 127899999997
Q ss_pred CCCC-----HHHHHHHH-HHHHH--------cCccceEecCCC--CHHHHHHHhhcCCcceeee----------------
Q 019000 137 PSVP-----IEDTIGEL-KMLVV--------EGKIKYIGLSEA--SPDTIRRAHAVHPITAVQM---------------- 184 (347)
Q Consensus 137 ~~~~-----~~~~~~~l-~~l~~--------~G~Ir~iGvS~~--~~~~l~~~~~~~~~~~vq~---------------- 184 (347)
.... ...+.+++ +.+.. .+.|--||-.|+ +.+.++++++...+.++..
T Consensus 171 F~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A 250 (513)
T TIGR01861 171 FAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRA 250 (513)
T ss_pred ccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccC
Confidence 6531 22233333 23331 256888886664 5677888887655554422
Q ss_pred ecccccc-chhhhHHHHHH-HhCCcEEecccC
Q 019000 185 EWSLLTR-DIEEEIIPLCR-ELGIGIVPYSPL 214 (347)
Q Consensus 185 ~~n~~~~-~~~~~l~~~~~-~~gi~v~a~spl 214 (347)
..|+... .....+.++.+ +.||..+..+|+
T Consensus 251 ~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~ 282 (513)
T TIGR01861 251 HLNVLECARSAEYICNELRKRYGIPRLDIDGF 282 (513)
T ss_pred CEEEEECHHHHHHHHHHHHHHhCCCeEecCcC
Confidence 2233211 11122333334 669998887775
No 161
>PRK12928 lipoyl synthase; Provisional
Probab=36.10 E-value=3.5e+02 Score=24.89 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCC---CCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYG---AHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
.+.++..+.++.+.+.|++.+--..... ....-..+-+.++......-.+-.++. +++.+.+ .
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l-------------tp~~~~~-~ 152 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL-------------TPDFWGG-Q 152 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe-------------ccccccC-C
Q ss_pred HHHHhHhCCCcccEEEe---------cCCCCCCCHHHHHHHHHHHHHcC---ccceE---ecCCCCHHHHHHHhhc---C
Q 019000 116 EASLKRLGVDYIDLYYQ---------HRVDPSVPIEDTIGELKMLVVEG---KIKYI---GLSEASPDTIRRAHAV---H 177 (347)
Q Consensus 116 e~SL~rL~~d~iDl~~l---------H~~~~~~~~~~~~~~l~~l~~~G---~Ir~i---GvS~~~~~~l~~~~~~---~ 177 (347)
++.|++|.-...+++.. ....+....++.++.++.+++.| .++.- |+ +-+.+++.+.++. .
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel 231 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAV 231 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhc
Q ss_pred Ccceeee-eccc-----------cccchhhhHHHHHHHhCCcEEecccC
Q 019000 178 PITAVQM-EWSL-----------LTRDIEEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 178 ~~~~vq~-~~n~-----------~~~~~~~~l~~~~~~~gi~v~a~spl 214 (347)
.++.+.+ +|.. ..+.....+-..+.+.|...++.+||
T Consensus 232 ~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 232 GCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 162
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=36.07 E-value=1.1e+02 Score=29.29 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.4
Q ss_pred hhHHHHHHHhCCcEEecc
Q 019000 195 EEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~s 212 (347)
..+++.|+++||.|+.-+
T Consensus 61 ~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHhCCCCEEEeC
Confidence 678999999999998863
No 163
>PRK06424 transcription factor; Provisional
Probab=35.64 E-value=83 Score=25.74 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=40.0
Q ss_pred hhhHHHHHHHhCCcEEec---ccCccc--cCCCCCc--CCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCCCH
Q 019000 194 EEEIIPLCRELGIGIVPY---SPLGRG--LLGGKAV--VESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTP 266 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~---spl~~G--~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 266 (347)
+..+=+-|.+.|..|..+ +|...- .-+.... ........ ........++...-.....+.|+.+-++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAY-KKYKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCC-CCccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 356777899999999998 555421 1000000 00000000 000011111111112344567777888899999
Q ss_pred HHHHHHHHH
Q 019000 267 AQLSLAWLL 275 (347)
Q Consensus 267 ~q~al~w~l 275 (347)
.++|-+--+
T Consensus 101 ~eLA~~iGv 109 (144)
T PRK06424 101 ADLAAKIFE 109 (144)
T ss_pred HHHHHHhCC
Confidence 888865443
No 164
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=35.24 E-value=1.2e+02 Score=29.32 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCcc--c-eEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhhHHHHHHHhCCcEEec
Q 019000 144 TIGELKMLVVEGKI--K-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 144 ~~~~l~~l~~~G~I--r-~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 211 (347)
-++.+.+|++.-.+ . .-|-+.++...+..+++...++++|....-.-. ..-.++...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46677778776542 2 337778889999999998889999987665421 12368999999999998664
No 165
>smart00642 Aamy Alpha-amylase domain.
Probab=35.22 E-value=62 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.2
Q ss_pred hhhHHHHHHHhCCcEEecccCc
Q 019000 194 EEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~spl~ 215 (347)
.+.+++.|+++||.|+.=-++.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 4789999999999999755554
No 166
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=35.18 E-value=1.8e+02 Score=26.96 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=63.7
Q ss_pred CccceEecCCCCHHHHHHHhhcC--C-cceeeeecccccc---chhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCC
Q 019000 155 GKIKYIGLSEASPDTIRRAHAVH--P-ITAVQMEWSLLTR---DIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESL 228 (347)
Q Consensus 155 G~Ir~iGvS~~~~~~l~~~~~~~--~-~~~vq~~~n~~~~---~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~ 228 (347)
.++..+--++++.+.++++.+.- . +.+.-..+|=++. ..+..+.+++++.++-++.-++=. ++
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----sN------ 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS-----SN------ 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-----cc------
Confidence 45555555667777665554431 1 1111111222222 123568888887776665532211 10
Q ss_pred CCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCC------CHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHH
Q 019000 229 PANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 297 (347)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl 297 (347)
-.+|.++|++++. ++.++-..|+.... .+.+..|+|+|+.+-+.+
T Consensus 225 -----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 -----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 0378889988874 68999999986543 478899999999775544
No 167
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.17 E-value=3.3e+02 Score=24.39 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccC-----------CCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCC
Q 019000 38 PVSEEDGISIIKHAFNKGITFFDTADV-----------YGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKG 106 (347)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA~~-----------Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~ 106 (347)
..+.++..++++...+.||..++.... |-.-..++.+.+..+..+..++.+..- +. ..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~~---------~~ 86 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLL--PG---------IG 86 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEec--CC---------cc
Confidence 347889999999999999999998721 211124555655544323333322210 00 11
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC---CCCHHHHHHHhhc---CCcc
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS---EASPDTIRRAHAV---HPIT 180 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS---~~~~~~l~~~~~~---~~~~ 180 (347)
..+. ++.+++ .|+|.+-++. ...+.....+.++.+++.|.--.+.++ .++++.+.++.+. ...+
T Consensus 87 ~~~~----i~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d 156 (263)
T cd07943 87 TVDD----LKMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGAD 156 (263)
T ss_pred CHHH----HHHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCC
Confidence 2333 444433 3655554433 112345667777788888875555542 2455555443332 2333
Q ss_pred eeeee--ccccccchhhhHHHHHHHh
Q 019000 181 AVQME--WSLLTRDIEEEIIPLCREL 204 (347)
Q Consensus 181 ~vq~~--~n~~~~~~~~~l~~~~~~~ 204 (347)
.+.+. +..+.+..-.+++..++++
T Consensus 157 ~i~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 157 CVYVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred EEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 33221 2222332224566666554
No 168
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=34.77 E-value=4.1e+02 Score=26.45 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCC--cccEEEecCCCCCCCHHHHHHHH
Q 019000 71 EVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVD--YIDLYYQHRVDPSVPIEDTIGEL 148 (347)
Q Consensus 71 E~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d--~iDl~~lH~~~~~~~~~~~~~~l 148 (347)
-+-+|.+|+. +.+++|+--+... ++....+..-+.+.+++-++. .|-+=+-. ....+......-+
T Consensus 341 ~~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~pqQI~lElTE--R~f~D~~~~~~iI 407 (524)
T COG4943 341 FRDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVRPQQIALELTE--RTFADPKKMTPII 407 (524)
T ss_pred HHHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcChHHheeehhh--hhhcCchhhhHHH
Confidence 3567777775 5677777777544 334445666666666666542 11110000 0112344567788
Q ss_pred HHHHHcCccceE-----ecCCCCHHHHHHH-hhcCCcc--ee-eeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 149 KMLVVEGKIKYI-----GLSEASPDTIRRA-HAVHPIT--AV-QMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 149 ~~l~~~G~Ir~i-----GvS~~~~~~l~~~-~~~~~~~--~v-q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
.++++.|.=-+| |-|| ..-|..+ ++.-++| ++ -+.++.........+++.|+++|+.+++=
T Consensus 408 ~r~ReaG~~IyIDDFGTGYSn--L~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 408 LRLREAGHEIYIDDFGTGYSN--LHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred HHHHhcCCeEEEccCcCcchh--HHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 899999984433 3333 2222221 1111111 11 12333333334467999999999998873
No 169
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=34.73 E-value=4.6e+02 Score=25.87 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=60.4
Q ss_pred CccCCCCCchHHHHHHHHhcC-C----CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCC----cccEEE
Q 019000 61 TADVYGAHANEVLVGKVLKQL-P----RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVD----YIDLYY 131 (347)
Q Consensus 61 TA~~Yg~g~sE~~lG~~l~~~-~----R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d----~iDl~~ 131 (347)
..-.|| .|+.|-++|++. . .+=++|.|-+....- -++|..-+++.-++|.-+ .+.++.
T Consensus 67 ~dvVfG---G~~kL~~aI~~~~~~~~~p~~I~V~ttC~~eiI----------GDDi~~v~~~~~~~~~~e~~~~~~~vv~ 133 (457)
T TIGR02932 67 ESAVFG---GAKRIEEGVLTLARRYPNLRVIPIITTCSTETI----------GDDIEGSIRKVNRALKKEFPDRKIKLVP 133 (457)
T ss_pred CceEEC---cHHHHHHHHHHHHHhCCCCCEEEEECCchHHhh----------cCCHHHHHHHHHhhhhhhcCCCCCeEEE
Confidence 346788 677788888764 1 223667666643321 123333333332222211 478899
Q ss_pred ecCCCCCCC----HHHHHHHHHHHH------HcCccceEecCCC--CHHHHHHHhhcCCcceeee
Q 019000 132 QHRVDPSVP----IEDTIGELKMLV------VEGKIKYIGLSEA--SPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 132 lH~~~~~~~----~~~~~~~l~~l~------~~G~Ir~iGvS~~--~~~~l~~~~~~~~~~~vq~ 184 (347)
+|.|+.... .+.+++++-+.. .+++|--||-.+. +.+.++++++...+.++.+
T Consensus 134 v~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 134 VHTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred eeCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 999876643 234444444322 2466777764332 4557777777766666553
No 170
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=34.65 E-value=1.8e+02 Score=26.27 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhHhCCC--------------------------cccEEEecCCCCCCCH---HHHHHHHHHHHHcCcc
Q 019000 107 TPEYVRSCCEASLKRLGVD--------------------------YIDLYYQHRVDPSVPI---EDTIGELKMLVVEGKI 157 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d--------------------------~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~I 157 (347)
++++ ++.++++|+++|.. .-|+++|..|....|. .++++.|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 4444 78888889888753 3477888877666554 468999999999986
Q ss_pred ceEecCCCCHHHHHHHhh
Q 019000 158 KYIGLSEASPDTIRRAHA 175 (347)
Q Consensus 158 r~iGvS~~~~~~l~~~~~ 175 (347)
.|=+.+|+...+.+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 67777888777765543
No 171
>PLN02444 HMP-P synthase
Probab=34.35 E-value=2.9e+02 Score=27.97 Aligned_cols=141 Identities=10% Similarity=0.072 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHcCCCe-EeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccC--CCccccCCCCHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITF-FDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSM--APTSVIVKGTPEYVRSCCE 116 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~-~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~--~~~~~~~~~~~~~i~~~le 116 (347)
+.++-.+=+..|.+.|-.. .|-+. .| .-..+.+++-+. ..+-|-|= ..... .......+.+.+.+...|+
T Consensus 235 ~ie~EveK~~~A~~~GADTvMDLST-Gg---di~~iR~~Il~~--spvPVGTV-PIYqA~~~~~~~~~~lt~d~~~d~ie 307 (642)
T PLN02444 235 SIEEEVYKLQWATMWGADTVMDLST-GR---HIHETREWILRN--SPVPVGTV-PIYQALEKVDGIAENLTWEVFRETLI 307 (642)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHc--CCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 4555556678888888753 35442 22 434444444221 11111110 00000 0000123567777777777
Q ss_pred HHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhh
Q 019000 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEE 196 (347)
Q Consensus 117 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~ 196 (347)
+..+ +-+|.+-||.-- +.+.++.++ + |..|+-+-.-.-+...+-... .=|++... .++
T Consensus 308 eQae----qGVDfmTIH~Gv-------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~------kENPlYe~-FD~ 365 (642)
T PLN02444 308 EQAE----QGVDYFTIHAGV-------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH------KENFAYEH-WDD 365 (642)
T ss_pred HHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC------CcCchHHH-HHH
Confidence 6665 457778888741 344455454 3 666765544444433332211 22455443 367
Q ss_pred HHHHHHHhCCcEE
Q 019000 197 IIPLCRELGIGIV 209 (347)
Q Consensus 197 l~~~~~~~gi~v~ 209 (347)
+++.|++++|.+-
T Consensus 366 ileI~k~YDVtlS 378 (642)
T PLN02444 366 ILDICNQYDIALS 378 (642)
T ss_pred HHHHHHHhCeeee
Confidence 9999999998874
No 172
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=34.16 E-value=1.2e+02 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEeccc
Q 019000 162 LSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 162 vS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (347)
.+..+.+.+..++...+++++-+--.--.+....++.++++++||++..+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 4445666666666543355554433332233346789999999999988754
No 173
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=34.15 E-value=3.3e+02 Score=25.80 Aligned_cols=136 Identities=12% Similarity=0.230 Sum_probs=80.7
Q ss_pred cccccccccccCCCC----CCCCHHHHHHHHHHHHHcC---CCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeec
Q 019000 22 SKLGFGCMGLTGMYN----SPVSEEDGISIIKHAFNKG---ITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGV 94 (347)
Q Consensus 22 s~lglG~~~~~~~~~----~~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~ 94 (347)
..+|-=|..+-. |+ ..++.++..+++....+.- +-.+|..+..+.- .+ .+-+.+. ...-++|.+|+-.
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~-~~-~l~~~~~--~~piilV~NK~DL 102 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL-IP-ELKRFVG--GNPVLLVGNKIDL 102 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc-cH-HHHHHhC--CCCEEEEEEchhh
Confidence 345655655421 22 1245666777666655322 2356765444321 12 2223332 4556789999875
Q ss_pred ccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHH
Q 019000 95 VSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTI 170 (347)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l 170 (347)
... ..+.+.+.+-+.+-++.+|....|++.+-. .....++++++.+.++.+.+.|-.+|.+|..-..|
T Consensus 103 l~k-------~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 103 LPK-------SVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCC-------CCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 421 234566666666667777765446665543 33456788999998887777899999999875544
No 174
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=33.92 E-value=42 Score=28.92 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhhcCCcceeeeeccc
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQMEWSL 188 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS-~~~~~~l~~~~~~~~~~~vq~~~n~ 188 (347)
.+..+|.||+-+.+ +|.....+ ..+.+.++.+.-.-+.+||. |.+.+.+.+.++...++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 35679999998864 34322111 23444555544444478886 4578888888888999999987554
No 175
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=33.85 E-value=3.3e+02 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCC
Q 019000 41 EEDGISIIKHAFNKGITFFDTADVY 65 (347)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DTA~~Y 65 (347)
.....+++..|.+.|+..+=.+++.
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~ 39 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHS 39 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCc
Confidence 3467899999999999988666554
No 176
>PRK07094 biotin synthase; Provisional
Probab=33.46 E-value=3e+02 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe
Q 019000 39 VSEEDGISIIKHAFNKGITFFD 60 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~D 60 (347)
.+.++..+.++.+.+.|++.|-
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~ 91 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIV 91 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 3778888899999999998774
No 177
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.40 E-value=4.2e+02 Score=25.06 Aligned_cols=106 Identities=14% Similarity=0.267 Sum_probs=65.6
Q ss_pred HHHHHHHHHhHhC-CCcccEEEecCCCCC-----------CCHHHHHHHHHH-HHHcCc---cceEecCC--CCHHHHHH
Q 019000 111 VRSCCEASLKRLG-VDYIDLYYQHRVDPS-----------VPIEDTIGELKM-LVVEGK---IKYIGLSE--ASPDTIRR 172 (347)
Q Consensus 111 i~~~le~SL~rL~-~d~iDl~~lH~~~~~-----------~~~~~~~~~l~~-l~~~G~---Ir~iGvS~--~~~~~l~~ 172 (347)
+++-.+.-+++|+ .+....+-||.+++. .+++++++++.+ +.+.|+ |+++=+.+ .+.+.+++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4444444444544 344577889998653 246677777766 455563 56666654 45666555
Q ss_pred Hh---hcCCcceeeeeccccccc----hh----hhHHHHHHHhCCcEEecccCcc
Q 019000 173 AH---AVHPITAVQMEWSLLTRD----IE----EEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 173 ~~---~~~~~~~vq~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 216 (347)
+. ...+..++-++||++... +. ..+.+..+++||.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 44 334557888999987431 11 3466677788999988777654
No 178
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.31 E-value=1.1e+02 Score=26.66 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEe
Q 019000 144 TIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 144 ~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (347)
..+.+++++++..=-.||+.+. +.++++++++... +++ .++ ....+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fi---vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFI---VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEE---ECC---CCCHHHHHHHHHcCCCEeC
Confidence 4455556655433346888775 8899998888643 222 222 2246899999999999886
No 179
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=33.03 E-value=2.1e+02 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEe
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQ 132 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~l 132 (347)
+.+.+.+.++..+ .++.++|.+|.+
T Consensus 216 t~e~~~~~l~~~~-~l~~~~i~~y~l 240 (453)
T PRK09249 216 TPESFARTLEKVL-ELRPDRLAVFNY 240 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEccC
Confidence 5566666655544 366777766654
No 180
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=32.71 E-value=2.9e+02 Score=25.78 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHh
Q 019000 43 DGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRL 122 (347)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL 122 (347)
.-.++|+.+-++|| .+|.|.. |++.+=+++.- .+..+|+|......- .++.+.--.++++...++=
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc------cCCCCCCCHHHHHHHHhcC
Confidence 46899999999998 9999865 67777778764 445566666543221 1222222334444444444
Q ss_pred CCCcccEEEecCC-----CCCCCHHHHHHHHHHHHHcCccceEecCC
Q 019000 123 GVDYIDLYYQHRV-----DPSVPIEDTIGELKMLVVEGKIKYIGLSE 164 (347)
Q Consensus 123 ~~d~iDl~~lH~~-----~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~ 164 (347)
|+ |.+.++-.. ....++++..+.+..+++.+=++++|+..
T Consensus 216 Gv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 216 GV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 43 444333322 13457899999999999999999999975
No 181
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.53 E-value=4.2e+02 Score=24.74 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCC--C--CCH--HHHHHHHHHHHHcCc
Q 019000 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP--S--VPI--EDTIGELKMLVVEGK 156 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~--~--~~~--~~~~~~l~~l~~~G~ 156 (347)
.+++.|..|+.......+ ..+.+... .+-+.|+..|+|+|+ +|.... . .+. ...++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~~----g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVEG----GWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCCC----CCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 456778888875321111 22343332 333456667766555 342110 0 011 112455566666656
Q ss_pred cceEecCCC-CHHHHHHHhhcCCcceeee
Q 019000 157 IKYIGLSEA-SPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 157 Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~ 184 (347)
|-=++..+. +++..+++++....|.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 776777665 6777888887766776655
No 182
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.52 E-value=2e+02 Score=22.03 Aligned_cols=79 Identities=23% Similarity=0.122 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCcc-------c--cCCCCHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTS-------V--IVKGTPEY 110 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~-------~--~~~~~~~~ 110 (347)
|..-......-.+++|.-|+-|-..|.-| .|.++---|-+ ..+++++++|+.+..+.... . ..+-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 55556777777889999999999999754 45555433332 45789999999654432110 0 11112346
Q ss_pred HHHHHHHHHh
Q 019000 111 VRSCCEASLK 120 (347)
Q Consensus 111 i~~~le~SL~ 120 (347)
++.+||.-|-
T Consensus 96 vr~~IE~~Lg 105 (117)
T COG3215 96 VRNQIETLLG 105 (117)
T ss_pred HHHHHHHHHH
Confidence 7777777663
No 183
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=32.50 E-value=4.2e+02 Score=24.70 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=52.2
Q ss_pred ccEEEecCCCCCC-CHHHHHHHHHHHHHcCccceEecCC---------CCHHHHHHHhhcCCcceeeeeccccc--cchh
Q 019000 127 IDLYYQHRVDPSV-PIEDTIGELKMLVVEGKIKYIGLSE---------ASPDTIRRAHAVHPITAVQMEWSLLT--RDIE 194 (347)
Q Consensus 127 iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~Ir~iGvS~---------~~~~~l~~~~~~~~~~~vq~~~n~~~--~~~~ 194 (347)
|.-+.|-.-++.. +...+.+.++.+++-|.|+.|.+.+ .+.+.++.+.+......+.++.|-.. ...-
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~ 216 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEA 216 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHH
Confidence 3334455444443 2356777788888888776444432 34444554544442223333433111 0112
Q ss_pred hhHHHHHHHhCCcEEecccCcccc
Q 019000 195 EEIIPLCRELGIGIVPYSPLGRGL 218 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~ 218 (347)
.+.++.+++.||.+...+++..|.
T Consensus 217 ~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 217 RAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHcCCEEEEEeeEeCCC
Confidence 567888889999999999988774
No 184
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.42 E-value=1.7e+02 Score=25.55 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCC
Q 019000 109 EYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEAS 166 (347)
Q Consensus 109 ~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~ 166 (347)
..+.+.+++.++.+|.+. .++ .+...+.+...+.++.+.++| +..|=++..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~---~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV---EIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE---EEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCEE---EEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 457788888999998432 222 333345577788888888887 6666665443
No 185
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.35 E-value=2.8e+02 Score=26.67 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=59.9
Q ss_pred cEEEecCCCCC-----------CCHHHHHHHHHHHH-HcCc---cceEecCC--CCHHHH---HHHhhcC---Ccceeee
Q 019000 128 DLYYQHRVDPS-----------VPIEDTIGELKMLV-VEGK---IKYIGLSE--ASPDTI---RRAHAVH---PITAVQM 184 (347)
Q Consensus 128 Dl~~lH~~~~~-----------~~~~~~~~~l~~l~-~~G~---Ir~iGvS~--~~~~~l---~~~~~~~---~~~~vq~ 184 (347)
=.+-||.+++. .+++++++++.++. +.|+ |+|+=+.+ .+.+++ .+++... ...++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34678988653 34788899988776 4454 55665554 345444 4444444 5678999
Q ss_pred eccccccc----h-h---hhHHHHHHHhCCcEEecccCccc
Q 019000 185 EWSLLTRD----I-E---EEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 185 ~~n~~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~G 217 (347)
+||+.... + . ....+..+++||.+......+..
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 99996531 1 1 45777888999999988777643
No 186
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=32.27 E-value=1.9e+02 Score=24.92 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHhCCCCcEEecCCC--CHHHHHHHHhcc
Q 019000 263 KCTPAQLSLAWLLRQGDDIVPIPGTT--KIKNLDENIGSL 300 (347)
Q Consensus 263 g~s~~q~al~w~l~~~~v~~~i~g~~--~~~~l~enl~a~ 300 (347)
..|-.++||+|++.++.-..+|.|+. ..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 34667899999998876567788865 788888888764
No 187
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.20 E-value=1.5e+02 Score=25.84 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=50.4
Q ss_pred HHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhhcCCcceeeeeccccccch
Q 019000 115 CEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDI 193 (347)
Q Consensus 115 le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~~ 193 (347)
+-+.|-+-|+..+-+=+ -. ...++.+++++++..=-.||..+. +.++++++++... +++ .++ ..
T Consensus 25 ~~~al~~~Gi~~iEit~---~t-----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi---vsP---~~ 89 (204)
T TIGR01182 25 LAKALIEGGLRVLEVTL---RT-----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI---VSP---GL 89 (204)
T ss_pred HHHHHHHcCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---ECC---CC
Confidence 44456666655444322 11 235555666665543356898875 8899998888643 233 122 22
Q ss_pred hhhHHHHHHHhCCcEEe
Q 019000 194 EEEIIPLCRELGIGIVP 210 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a 210 (347)
..+++++|+++||.++.
T Consensus 90 ~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP 106 (204)
T ss_pred CHHHHHHHHHcCCcEEC
Confidence 46899999999998876
No 188
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.05 E-value=3.7e+02 Score=24.00 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHH-cCccceEecCCCCHHHHHHHhhcCCccee
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV-EGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~-~G~Ir~iGvS~~~~~~l~~~~~~~~~~~v 182 (347)
..++.+...+-++. |.++|+++|.+- ....-+.-++.++.+.+ ...++..+++..+.+.++.+.+. .++.+
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i 86 (259)
T cd07939 15 VAFSREEKLAIARA-LDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAV 86 (259)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEE
Q ss_pred eeecccccc--------------chhhhHHHHHHHhCCcEEecccCcc
Q 019000 183 QMEWSLLTR--------------DIEEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 183 q~~~n~~~~--------------~~~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
.+.++.-+. ..-.+.+++|+++|+.+....+...
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 134 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS 134 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC
No 189
>PRK07328 histidinol-phosphatase; Provisional
Probab=32.03 E-value=3.8e+02 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCeEeCccC
Q 019000 43 DGISIIKHAFNKGITFFDTADV 64 (347)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~ 64 (347)
...+++++|.+.|+..+=-+++
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecC
Confidence 3678999999999998755544
No 190
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=31.59 E-value=2.6e+02 Score=25.65 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCC------CHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHH
Q 019000 253 ARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 297 (347)
Q Consensus 253 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl 297 (347)
.+|.++|+++|. ++.++-..|.-... .+.+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHHHHHHH
Confidence 378899998874 68899999986554 478899999999876544
No 191
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=31.55 E-value=1.4e+02 Score=21.97 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=38.6
Q ss_pred hHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-ccceEecCCC-CHHHHHHHhhcCCcceeeeec
Q 019000 120 KRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSEA-SPDTIRRAHAVHPITAVQMEW 186 (347)
Q Consensus 120 ~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~Ir~iGvS~~-~~~~l~~~~~~~~~~~vq~~~ 186 (347)
+.++....|++++-..-+..+..++++.+ ++.+ .++-|.+|+. +.....++++.+-.+++.-++
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~~~~~~~~i---~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGDGLELLEQI---RQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSBHHHHHHHH---HHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred HHhcccCceEEEEEeeecccccccccccc---ccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 33344459999998765555544455444 4444 7777777765 566677777665444444443
No 192
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=31.32 E-value=2e+02 Score=26.17 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=13.2
Q ss_pred HHHHHHHcCCCeEeCcc
Q 019000 47 IIKHAFNKGITFFDTAD 63 (347)
Q Consensus 47 ~l~~A~~~Gin~~DTA~ 63 (347)
-|...|+.|||+||--.
T Consensus 46 sI~~QL~~GvR~LdLdv 62 (267)
T cd08590 46 SITDQLDLGARFLELDV 62 (267)
T ss_pred CHHHHHhhCCcEEEEee
Confidence 46678899999998433
No 193
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=31.32 E-value=4.2e+02 Score=26.87 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeee
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~ 184 (347)
+.+.+.+...|++..+ +-||.+-||.-- ..+.++.++ + |..|+-+-.-.-+...+-...
T Consensus 291 ~lt~e~~~d~ieeQAe----qGVDf~TIHaGv-------~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~------ 349 (607)
T PRK09284 291 DLTWEIFRDTLIEQAE----QGVDYFTIHAGV-------LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH------ 349 (607)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC------
Confidence 5567777777766665 457778888641 344444444 3 667776655444444332221
Q ss_pred eccccccchhhhHHHHHHHhCCcEE
Q 019000 185 EWSLLTRDIEEEIIPLCRELGIGIV 209 (347)
Q Consensus 185 ~~n~~~~~~~~~l~~~~~~~gi~v~ 209 (347)
.=|++... ..++++.|++++|.+-
T Consensus 350 kENplYe~-FD~ileI~k~YDVtlS 373 (607)
T PRK09284 350 KENFLYTH-FEEICEIMAAYDVSFS 373 (607)
T ss_pred CcCcHHHH-HHHHHHHHHHhCeeee
Confidence 22444433 3689999999998874
No 194
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=31.16 E-value=1e+02 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 019000 247 KNKQIYARVENLAKRNKCTPAQLSLAW 273 (347)
Q Consensus 247 ~~~~~~~~l~~ia~~~g~s~~q~al~w 273 (347)
+..+.+.+|.++|++.|++..++|.-.
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 467788899999999999999987543
No 195
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.15 E-value=1.9e+02 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAH 68 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g 68 (347)
+.++..++++.|.+.||+-+=..++|-.|
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 88999999999999999987766666544
No 196
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.02 E-value=4.6e+02 Score=24.79 Aligned_cols=152 Identities=9% Similarity=0.008 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHH--HHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLV--GKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~l--G~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~ 117 (347)
+.++..+.+..+.+.|++.|=.- .++...-++.+ =+++++.--+++.|.-=.. ..++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHHH-HHH
Confidence 56677788888999999988642 22211012111 1233332112333322111 1234443332 222
Q ss_pred HHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCC-HHHHHHHhhcCCcceeeeecccccc-chh
Q 019000 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEAS-PDTIRRAHAVHPITAVQMEWSLLTR-DIE 194 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~-~~~l~~~~~~~~~~~vq~~~n~~~~-~~~ 194 (347)
.|+.+ ++.++-.|-+. +-++.+.+|+++-.|. +.|=|-++ .+++.++++...++++|+..+..-. ..-
T Consensus 211 ~l~~~-----~l~~iEeP~~~----~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEEL-----GFFWYEDPLRE----ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhhc-----CCCeEeCCCCc----hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 33443 44455555322 2346677888875554 23334467 8889999888889999998776422 123
Q ss_pred hhHHHHHHHhCCcEEecc
Q 019000 195 EEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~s 212 (347)
.++...|+++||.++..+
T Consensus 282 ~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 282 MKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 689999999999997653
No 197
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.97 E-value=71 Score=19.15 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 019000 250 QIYARVENLAKRNKCTPAQLS 270 (347)
Q Consensus 250 ~~~~~l~~ia~~~g~s~~q~a 270 (347)
+..+.|.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 456799999999999988754
No 198
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=30.93 E-value=2e+02 Score=27.73 Aligned_cols=78 Identities=10% Similarity=-0.073 Sum_probs=54.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhhcCCc----ceeeeecccccc-chhhhHHHH
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPI----TAVQMEWSLLTR-DIEEEIIPL 200 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir-~iGvS~~~~~~l~~~~~~~~~----~~vq~~~n~~~~-~~~~~l~~~ 200 (347)
+++.++-.|-+. +.++.+.+|+++..|- +.|=|.++...+.++++.... +++|+...-.-. .....+.+.
T Consensus 231 ~~~~~iEeP~~~----~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~l 306 (385)
T cd03326 231 YGLRWYEEPGDP----LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDV 306 (385)
T ss_pred cCCCEEECCCCc----cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHH
Confidence 455666666433 2356677787776554 666677899999999887655 889887664321 123689999
Q ss_pred HHHhCCcE
Q 019000 201 CRELGIGI 208 (347)
Q Consensus 201 ~~~~gi~v 208 (347)
|+.+|+.+
T Consensus 307 A~a~gi~~ 314 (385)
T cd03326 307 LEAHGWSR 314 (385)
T ss_pred HHHcCCCC
Confidence 99999984
No 199
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=30.88 E-value=84 Score=21.55 Aligned_cols=17 Identities=6% Similarity=0.346 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCHHHHH
Q 019000 254 RVENLAKRNKCTPAQLS 270 (347)
Q Consensus 254 ~l~~ia~~~g~s~~q~a 270 (347)
.+.+||+++|+|..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999998865
No 200
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=30.75 E-value=98 Score=27.62 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=45.4
Q ss_pred CCCccccccccccccccCCCCCC--CCHHHHHHH----HHHHHHcCCCeEeCc--cCCCCCchHHHHHHHHhcC------
Q 019000 16 TQGLEVSKLGFGCMGLTGMYNSP--VSEEDGISI----IKHAFNKGITFFDTA--DVYGAHANEVLVGKVLKQL------ 81 (347)
Q Consensus 16 ~tg~~vs~lglG~~~~~~~~~~~--~~~~~~~~~----l~~A~~~Gin~~DTA--~~Yg~g~sE~~lG~~l~~~------ 81 (347)
.+|+.+|.+||.+-+- -.+|+. ...+++.++ +..|.++|||.|--| +.|=.-.+|....+++...
T Consensus 65 etgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 6899999999987431 124443 123345444 555668899999887 3443223555555555431
Q ss_pred -CCCCeEEEeee
Q 019000 82 -PRKKIQLASKF 92 (347)
Q Consensus 82 -~R~~v~i~tK~ 92 (347)
.+-.|.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 56666666655
No 201
>PLN00191 enolase
Probab=30.72 E-value=3.6e+02 Score=26.71 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEec-C-CCCHHHHHHHhhcCCcceeee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGL-S-EASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGv-S-~~~~~~l~~~~~~~~~~~vq~ 184 (347)
+++...+-+...+ +..++.+|-.|-.. +-|+.+.+|.++.+|.-+|= + ..+++.+.++++....+++++
T Consensus 296 s~~e~i~~~~~L~-----~~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 296 SGDELIDLYKEFV-----SDYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred CHHHHHHHHHHHh-----hcCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 5554444444333 33467778777543 34677777888888876662 2 256889999999888899998
Q ss_pred ecccccc-chhhhHHHHHHHhCCcEEec
Q 019000 185 EWSLLTR-DIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 185 ~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 211 (347)
..|-.-. ....++...|+.+|+.++..
T Consensus 367 Kl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 367 KVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 8775432 12367999999999999764
No 202
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=30.53 E-value=3.8e+02 Score=23.58 Aligned_cols=129 Identities=14% Similarity=0.108 Sum_probs=70.6
Q ss_pred CCeEeC-ccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecC
Q 019000 56 ITFFDT-ADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHR 134 (347)
Q Consensus 56 in~~DT-A~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~ 134 (347)
.|.+.. +..|+. -+++.+.+|.++ -.+++..+-|+.......... ....+.+.+.+-+.++-|| +.+..+++--
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~l--~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHERRL--RDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCHC--GSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecccc--cccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 444443 456764 478899999887 568899999997554321110 1235666566666999999 9999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 135 VDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 135 ~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
|.....-.+.++.|..+.+.-. ..-.-++.+.---+. ..+++++++++|+..+.-
T Consensus 94 Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVIA 148 (230)
T ss_dssp -TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEE
T ss_pred CCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEEe
Confidence 8654444556666666555421 011123444322122 357899999999987653
No 203
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.15 E-value=3.8e+02 Score=24.41 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEec---------------------CCCC
Q 019000 109 EYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGL---------------------SEAS 166 (347)
Q Consensus 109 ~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGv---------------------S~~~ 166 (347)
..+...+++--..-+---|-.+.+-+| +.+.+.+.|..|.+.|- |-.+|+ .+++
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP----~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDP----DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCC----CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Q ss_pred HHHHHHHhhcCC------cceeeeeccccccchhhhHHHHHHHhCC
Q 019000 167 PDTIRRAHAVHP------ITAVQMEWSLLTRDIEEEIIPLCRELGI 206 (347)
Q Consensus 167 ~~~l~~~~~~~~------~~~vq~~~n~~~~~~~~~l~~~~~~~gi 206 (347)
.+..-++++... +-+++.-||+..+......+..|++.|+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv 123 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV 123 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC
No 204
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.88 E-value=3.8e+02 Score=23.38 Aligned_cols=146 Identities=11% Similarity=-0.040 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
|.+++.++++.|++.|+...|+- +..+-.++... .+.+++++-= ....+.+++.+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe-------------~~as~~~~~~l 71 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQV-------------LKSARVMKAAV 71 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHH-------------HHHHHHHHHHH
Confidence 78899999999999997655422 22333333321 2344433311 12344455555
Q ss_pred HHHHhHhCCC-----cccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhhcCCcceeeeecccc
Q 019000 116 EASLKRLGVD-----YIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQMEWSLL 189 (347)
Q Consensus 116 e~SL~rL~~d-----~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~ 189 (347)
+....++... .---+++-.+..+.+.-...=.-.-|+..|. +-++|... +++.+.+......++++.+....-
T Consensus 72 ~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~~ 150 (213)
T cd02069 72 AYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLLV 150 (213)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccchh
Confidence 5552323221 1112333333333221111112223566775 77788654 666677776667778887766554
Q ss_pred ccch-hhhHHHHHHHhCCc
Q 019000 190 TRDI-EEEIIPLCRELGIG 207 (347)
Q Consensus 190 ~~~~-~~~l~~~~~~~gi~ 207 (347)
.... -.++++.+++.+..
T Consensus 151 ~~~~~~~~~i~~L~~~~~~ 169 (213)
T cd02069 151 PSLDEMVEVAEEMNRRGIK 169 (213)
T ss_pred ccHHHHHHHHHHHHhcCCC
Confidence 3322 26788888887653
No 205
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.77 E-value=4.9e+02 Score=24.71 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTA 62 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA 62 (347)
.+.++..++++..-+.||..++..
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG 42 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAG 42 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 478888999999999999999965
No 206
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=29.66 E-value=3.3e+02 Score=27.59 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHhCCCcccEEEecCCCCC---CCHHHHHHHHHHHHHcCccceEec
Q 019000 109 EYVRSCCEASLKRLGVDYIDLYYQHRVDPS---VPIEDTIGELKMLVVEGKIKYIGL 162 (347)
Q Consensus 109 ~~i~~~le~SL~rL~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~Ir~iGv 162 (347)
+...+-|+..++...-.+.+ -|-...- ..+.+..+-|.+++++|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 66778889999998877776 2222111 224456777889999999998865
No 207
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.55 E-value=5.1e+02 Score=24.87 Aligned_cols=86 Identities=12% Similarity=0.240 Sum_probs=52.9
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHHHcC-------ccceEecCC--CCHHHHHHHhh---cCCcceeeeecc
Q 019000 131 YQHRVDPS-----------VPIEDTIGELKMLVVEG-------KIKYIGLSE--ASPDTIRRAHA---VHPITAVQMEWS 187 (347)
Q Consensus 131 ~lH~~~~~-----------~~~~~~~~~l~~l~~~G-------~Ir~iGvS~--~~~~~l~~~~~---~~~~~~vq~~~n 187 (347)
.||.+++. .++++.++++.+...+- .||++=+.. .+.+.++++.+ ..+..++-++||
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN 300 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWN 300 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCC
Confidence 38988643 23566776666554432 256666664 45666555543 344678899999
Q ss_pred ccccc----hh----hhHHHHHHHhCCcEEecccCcc
Q 019000 188 LLTRD----IE----EEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 188 ~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 216 (347)
.+... +. ..+.+..+++|+.+......+.
T Consensus 301 ~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 301 PFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 86531 11 3466677788999987655554
No 208
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=29.41 E-value=4.8e+02 Score=24.45 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CccCCCCC--chHHHHHHHHhcCCCC--CeEEEeeeecccCCCccccCC
Q 019000 40 SEEDGISIIKHAFNKGITFFD----------TADVYGAH--ANEVLVGKVLKQLPRK--KIQLASKFGVVSMAPTSVIVK 105 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D----------TA~~Yg~g--~sE~~lG~~l~~~~R~--~v~i~tK~~~~~~~~~~~~~~ 105 (347)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++.. |+ .+-|+.|+...... .
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~av-r~~v~~pVsvKiR~g~~~------~ 147 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAM-KDAVSIPVTVKHRIGIDD------Q 147 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHH-HHHcCCceEEEEEeeeCC------C
Confidence 677878888888899999888 44556631 2334555565553 22 35677776432211 1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC-CCHH---------HHHHHHHHHHHcC-ccceEecCCC-CHHHHHHH
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIE---------DTIGELKMLVVEG-KIKYIGLSEA-SPDTIRRA 173 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~-~~~~---------~~~~~l~~l~~~G-~Ir~iGvS~~-~~~~l~~~ 173 (347)
.+.+. ...+-+.|+..| +|.+.+|.-+.. .... -.|+.+.++++.- .|--||.... +++.++++
T Consensus 148 ~t~~~-~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~ 223 (333)
T PRK11815 148 DSYEF-LCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEH 223 (333)
T ss_pred cCHHH-HHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHH
Confidence 11121 223334455666 567778853210 0000 1256666777653 5666776654 67777777
Q ss_pred hhcCCcceeeee
Q 019000 174 HAVHPITAVQME 185 (347)
Q Consensus 174 ~~~~~~~~vq~~ 185 (347)
++. .+.+++-
T Consensus 224 l~~--aDgVmIG 233 (333)
T PRK11815 224 LQH--VDGVMIG 233 (333)
T ss_pred Hhc--CCEEEEc
Confidence 652 5666654
No 209
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.34 E-value=4.7e+02 Score=24.37 Aligned_cols=134 Identities=14% Similarity=0.107 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CccCCCCC--chHHHHHHHHhcC-CCCCeEEEeeeecccCCCccccCCC
Q 019000 40 SEEDGISIIKHAFNKGITFFD----------TADVYGAH--ANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D----------TA~~Yg~g--~sE~~lG~~l~~~-~R~~v~i~tK~~~~~~~~~~~~~~~ 106 (347)
+.++..+....+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...+.+. .
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~------~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL------D 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc------c
Confidence 778888888888889999999 44455532 2334556665543 112456888886543211 1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCC-CCC--------H-HHHHHHHHHHHHcC-ccceEecCC-CCHHHHHHHh
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-SVP--------I-EDTIGELKMLVVEG-KIKYIGLSE-ASPDTIRRAH 174 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~-~~~--------~-~~~~~~l~~l~~~G-~Ir~iGvS~-~~~~~l~~~~ 174 (347)
+.+.+ ..+-+.|+..| +|.+-+|.-.. ... . .--|+...++++.- .|--||..+ ++.+.+.+.+
T Consensus 139 ~~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 12222 23334455556 77788896532 000 0 01466666777654 577777665 3666666666
Q ss_pred hcCCcceeeee
Q 019000 175 AVHPITAVQME 185 (347)
Q Consensus 175 ~~~~~~~vq~~ 185 (347)
. ..+.+|+-
T Consensus 215 ~--g~dgVMig 223 (318)
T TIGR00742 215 S--HVDGVMVG 223 (318)
T ss_pred h--CCCEEEEC
Confidence 4 45666653
No 210
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=28.80 E-value=2.8e+02 Score=22.16 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC----CcccEEEecCCCCC-CCHHHHHHHHHHHHH
Q 019000 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV----DYIDLYYQHRVDPS-VPIEDTIGELKMLVV 153 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~----d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~ 153 (347)
|=-+.|+-|+|.. ..+..+++.|.++++.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4445666666532 3678888999998887753 56899999988653 456667666666554
No 211
>PRK05588 histidinol-phosphatase; Provisional
Probab=28.70 E-value=4.2e+02 Score=23.53 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCeEeCccCCCCC---------chHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHH
Q 019000 43 DGISIIKHAFNKGITFFDTADVYGAH---------ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (347)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~g---------~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (347)
...+.+++|.+.|+..+ .+++.... .-+..+- .++..+..+|.+..-++. .++ ...
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~-~i~~~~~~~I~~GiE~~~------------~~~-~~~ 81 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFN-KYSKYRNNKLLLGIELGM------------EKD-LIE 81 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHH-HHHHHhcCCcceEEEecc------------cCC-CHH
Confidence 46799999999999998 77663110 0112221 112212234433333332 222 345
Q ss_pred HHHHHHhHhCCCcccEEEecCCC
Q 019000 114 CCEASLKRLGVDYIDLYYQHRVD 136 (347)
Q Consensus 114 ~le~SL~rL~~d~iDl~~lH~~~ 136 (347)
.+++.|++...||+ +.-+|+.+
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeC
Confidence 56778888888887 78889864
No 212
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=28.59 E-value=5.6e+02 Score=24.97 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--ccceEecCC-C-CHHHHHHHhhcCCccee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGLSE-A-SPDTIRRAHAVHPITAV 182 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~Ir~iGvS~-~-~~~~l~~~~~~~~~~~v 182 (347)
+++...+-+++.++. .+++++-.|-+.. -|+.+.+|.+.- .|.-.|=-. . +.+.++++++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444444444433333 4677777775433 356666666653 444333222 2 58999999988888999
Q ss_pred eeecccccc-chhhhHHHHHHHhCCcEEe
Q 019000 183 QMEWSLLTR-DIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 183 q~~~n~~~~-~~~~~l~~~~~~~gi~v~a 210 (347)
|+..|-.-. ....++...|+.+|+.++.
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 988775432 1236789999999999654
No 213
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.49 E-value=3.6e+02 Score=24.76 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.2
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHH
Q 019000 254 RVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 297 (347)
Q Consensus 254 ~l~~ia~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl 297 (347)
+|.++|++.+. ++.++-..|+.... .+.+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 78889988874 68888889987654 467889999999876554
No 214
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.40 E-value=3.7e+02 Score=26.15 Aligned_cols=102 Identities=15% Similarity=0.229 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCeEeCccCCCC-CchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC
Q 019000 46 SIIKHAFNKGITFFDTADVYGA-HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV 124 (347)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~ 124 (347)
.++.++++.| .+-..-.||+ |.--..|.+.+...-.-++.-.+-+ ..+..++++.+|++.++++.
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHhc
Confidence 5788999987 4445557884 6666788888876322222111111 23678899999999888875
Q ss_pred CcccEEEe---cCCCCCCCHHHHHHHHHHHHHcCccceEecCCCC
Q 019000 125 DYIDLYYQ---HRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEAS 166 (347)
Q Consensus 125 d~iDl~~l---H~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~ 166 (347)
..==+++| |+.+.. .=++|--.++.|.|-.||.++-+
T Consensus 103 gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 103 GRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred CCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCCC
Confidence 44445554 555432 33566778899999999998643
No 215
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=28.37 E-value=3.3e+02 Score=24.61 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhhcCCcceee
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGvS~~~~~~l~~~~~~~~~~~vq 183 (347)
.++.+...+- -+.|.++|++.|.+-. |... .+.++..+.+.+.++ .+-.++...+.+.++.+.+. .++.+-
T Consensus 18 ~~s~~~k~~i-~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEI-AKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 4566655444 4459999988888763 4332 333444455544443 34455566678888888775 334443
Q ss_pred eecccc--------ccch------hhhHHHHHHHhCCcEEec
Q 019000 184 MEWSLL--------TRDI------EEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 184 ~~~n~~--------~~~~------~~~l~~~~~~~gi~v~a~ 211 (347)
+.++.- .... -.+++.+++++|+.|...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 332211 1111 146778899999876554
No 216
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=28.35 E-value=4.3e+02 Score=23.56 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc-cCCCC-C-chHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTA-DVYGA-H-ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~-g-~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le 116 (347)
+.+|+. .|++.|...||.= +.-|. | ....++.+.... -....-||..+|-.. +.|..+..+..
T Consensus 9 ~~~EA~----~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEAE----EALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHHH----HHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 555554 5778999999954 22331 2 245555544443 233356777777442 34566665555
Q ss_pred HHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHH-------HHHcCccceEecCCCC------HHHHHHHhhcCCcceee
Q 019000 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKM-------LVVEGKIKYIGLSEAS------PDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 117 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~-------l~~~G~Ir~iGvS~~~------~~~l~~~~~~~~~~~vq 183 (347)
..- .-|+|||=+-+.-..+ .++..+.|+. .-.+.++-+.+.+.+. +..+.++.....++.++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred HHH-hcCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 444 3488888876654332 2333333332 2234567788888763 45555555555677776
Q ss_pred ee------ccccccc---hhhhHHHHHHHhCCcE
Q 019000 184 ME------WSLLTRD---IEEEIIPLCRELGIGI 208 (347)
Q Consensus 184 ~~------~n~~~~~---~~~~l~~~~~~~gi~v 208 (347)
+. -++++.- ...+.++.|+++|+.+
T Consensus 150 lDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 150 LDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 63 2333322 2256888888888653
No 217
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.17 E-value=79 Score=24.58 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYG 66 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg 66 (347)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 667789999999999999999999885
No 218
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.17 E-value=77 Score=28.45 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHH-HHcCccceEecC-------CCCHHHHHHHhhcCCcceee
Q 019000 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKML-VVEGKIKYIGLS-------EASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 112 ~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l-~~~G~Ir~iGvS-------~~~~~~l~~~~~~~~~~~vq 183 (347)
...++..|+-.| +|||++-+-|-......+++++..-++ ++-|.--+.|=+ .-..++..+.++.-.|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 466777888888 999999999876544334444443333 334433333321 11223333334445677777
Q ss_pred eeccccccch--hhhHHHHHHHhCCcEEe
Q 019000 184 MEWSLLTRDI--EEEIIPLCRELGIGIVP 210 (347)
Q Consensus 184 ~~~n~~~~~~--~~~l~~~~~~~gi~v~a 210 (347)
+.=.-+.-.. ..+++..+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 6655444332 24677777777777665
No 219
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=27.96 E-value=6.7e+02 Score=25.92 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC-----------CCCCeEEEeeeecccCCCccccCCCCHH
Q 019000 41 EEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL-----------PRKKIQLASKFGVVSMAPTSVIVKGTPE 109 (347)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~-----------~R~~v~i~tK~~~~~~~~~~~~~~~~~~ 109 (347)
.++..++++.-.+.|+ .-|.+..++++-+...+-++-++. .|-+.+-.+|+... ...
T Consensus 71 ~~~V~Eli~~L~~nGF-VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVl-----------G~G 138 (637)
T TIGR03693 71 QKRVFEIGEILYKNGF-VRDVSQDAPHELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAA-----------GSG 138 (637)
T ss_pred HHHHHHHHHHHHhCCc-eeecccccCCCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEE-----------ecC
Confidence 3456788899999997 677776666555555555554331 45555666777544 233
Q ss_pred HHHHHHHHHHhHhCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccc
Q 019000 110 YVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSL 188 (347)
Q Consensus 110 ~i~~~le~SL~rL~~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~ 188 (347)
.+-.++-.||-++|...|-++-....... ..+.+..+.-++.=..=.|..|.. -+.+.+.+.++ ++|+|..--.-
T Consensus 139 g~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~--~~~~dl~ev~~--~~DiVi~vsDd 214 (637)
T TIGR03693 139 DFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDF--AEDQHLHEAFE--PADWVLYVSDN 214 (637)
T ss_pred chHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccC--CcchhHHHhhc--CCcEEEEECCC
Confidence 46778888999999877644333332100 012233111111111112344443 23445555553 34444332111
Q ss_pred cccchhhhHHHHHHHhCCcEEecccCccccCCCC
Q 019000 189 LTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGK 222 (347)
Q Consensus 189 ~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 222 (347)
.+......+-..|.+.|...+...|.+...+.|.
T Consensus 215 y~~~~Lr~lN~acvkegk~~IPai~~G~~~liGP 248 (637)
T TIGR03693 215 GDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGP 248 (637)
T ss_pred CChHHHHHHHHHHHHcCCCeEEEEEcccceeecc
Confidence 1111236788999999988888777776666665
No 220
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=27.95 E-value=2.8e+02 Score=25.67 Aligned_cols=133 Identities=16% Similarity=0.111 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCCCCC--chHHHHHHHHhcC-CCCCeEEEeeeecccCCCccccCCC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTA----------DVYGAH--ANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~g--~sE~~lG~~l~~~-~R~~v~i~tK~~~~~~~~~~~~~~~ 106 (347)
+.+...+....+.+.|+..||-- ..||.+ .+-..+.+.++.. ..-++-|+.|+...+. .
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~--------~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD--------D 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccc--------c
Confidence 77788888888888899999932 234422 2445666666543 1123566777755432 1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCccceEecCC-CCHHHHHHHhhcCCcceee
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI--EDTIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~Ir~iGvS~-~~~~~l~~~~~~~~~~~vq 183 (347)
+.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 444666667 788999986544322 35678888888776666665554 3677777777665566555
Q ss_pred e
Q 019000 184 M 184 (347)
Q Consensus 184 ~ 184 (347)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 221
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=27.78 E-value=1.8e+02 Score=26.72 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=59.3
Q ss_pred CccceEecCCCCHHHHHHHhhc----CCcceeeeeccccccc---hhhhHHHHHHHhCCcEEecccCccccCCCCCcCCC
Q 019000 155 GKIKYIGLSEASPDTIRRAHAV----HPITAVQMEWSLLTRD---IEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVES 227 (347)
Q Consensus 155 G~Ir~iGvS~~~~~~l~~~~~~----~~~~~vq~~~n~~~~~---~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~ 227 (347)
.++-.+--++++.+...++.+. .+ ...-..+|=++.. .+..+.+++++-++-++.-++-.+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~-~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss----------- 222 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFP-ELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS----------- 222 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHST-CEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H-----------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCc-cccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc-----------
Confidence 4677777778887766655443 22 1111123333321 235677777776655554222110
Q ss_pred CCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCC------CHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHH
Q 019000 228 LPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 297 (347)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl 297 (347)
--.+|.++|++++. ++.++-..|+-... .+.+..|+|+|+.+-+.+
T Consensus 223 -----------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 223 -----------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -----------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred -----------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 11489999999885 68999999987665 478899999999887654
No 222
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=27.71 E-value=3.1e+02 Score=25.99 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEec
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQH 133 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH 133 (347)
.+.+.+++.++. +.+++.+++.+|.+-
T Consensus 167 qt~e~~~~tl~~-~~~l~p~~is~y~L~ 193 (353)
T PRK05904 167 LKLKDLDEVFNF-ILKHKINHISFYSLE 193 (353)
T ss_pred CCHHHHHHHHHH-HHhcCCCEEEEEeeE
Confidence 367777777774 356888888888776
No 223
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.59 E-value=5.4e+02 Score=24.44 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhhcCCcceee
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-Ir~iGvS~~~~~~l~~~~~~~~~~~vq 183 (347)
.++.+... .+-+.|.++|+++|.+- +|... +.-++.++.+.+.+. .+..+++....+.++.+.+.. ++.+.
T Consensus 19 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKL-AIARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 45566544 45556999999999885 33221 333666677766643 677777777788888877652 34443
Q ss_pred eeccccc--------cchh------hhHHHHHHHhCCcEE
Q 019000 184 MEWSLLT--------RDIE------EEIIPLCRELGIGIV 209 (347)
Q Consensus 184 ~~~n~~~--------~~~~------~~l~~~~~~~gi~v~ 209 (347)
+-...-+ ...+ .+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3332211 1111 368899999998765
No 224
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=27.51 E-value=8.3e+02 Score=26.61 Aligned_cols=104 Identities=9% Similarity=0.131 Sum_probs=57.1
Q ss_pred cCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC-----CcccEEEec
Q 019000 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV-----DYIDLYYQH 133 (347)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~-----d~iDl~~lH 133 (347)
..|| .|+.|-++|++. ..+=|+|.|-+.... |-..++..++++.- ..+.++.++
T Consensus 551 ~VfG---G~~~L~~~I~~~~~~~~p~~I~V~tTc~~ei--------------IGDDi~~vi~~~~~~~~~~~~~pvi~v~ 613 (917)
T PRK14477 551 AIFG---GWENLKQGILRVIEKFKPKVIGVMTTGLTET--------------MGDDVRSAIVQFREEHPELDDVPVVWAS 613 (917)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEECCchHhh--------------hhcCHHHHHHHHHhhccccCCCeEEEee
Confidence 4677 566777777652 444567777764332 22222233333321 247899999
Q ss_pred CCCCCCCH----HHHHHHHH-HHH-----HcCccceEecCCC---CHHHHHHHhhcCCcceee
Q 019000 134 RVDPSVPI----EDTIGELK-MLV-----VEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 134 ~~~~~~~~----~~~~~~l~-~l~-----~~G~Ir~iGvS~~---~~~~l~~~~~~~~~~~vq 183 (347)
.|+..... +.+++++- .+. ..++|--||-++. +.++++++++...+.++-
T Consensus 614 tpgF~Gs~~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 614 TPDYCGSLQEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred CCCCccCHHHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 99776432 23333332 222 3567888876654 445666777665555543
No 225
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=27.47 E-value=4.6e+02 Score=23.66 Aligned_cols=135 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeE---eCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFF---DTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~---DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
.+.++..+.++.+.+.|++.| ++....-.-..++.+....+...+-.+.+..-.+.. +++.++.
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~-----------~~e~l~~-- 128 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLL-----------DPEQAKR-- 128 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCC-----------CHHHHHH--
Q ss_pred HHHHhHhCCCcccEEEe------cCCCCCCCHHHHHHHHHHHHHcCccce-----EecCCCCHHHHHHHhhc-CCcceee
Q 019000 116 EASLKRLGVDYIDLYYQ------HRVDPSVPIEDTIGELKMLVVEGKIKY-----IGLSEASPDTIRRAHAV-HPITAVQ 183 (347)
Q Consensus 116 e~SL~rL~~d~iDl~~l------H~~~~~~~~~~~~~~l~~l~~~G~Ir~-----iGvS~~~~~~l~~~~~~-~~~~~vq 183 (347)
|++.|.+.+-+-+= +.......+++.+++++.+++.| |+- +|+ +.+.+.+.+.+.. ....+..
T Consensus 129 ---Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~G-i~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~ 203 (296)
T TIGR00433 129 ---LKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAG-LKVCSGGIFGL-GETVEDRIGLALALANLPPES 203 (296)
T ss_pred ---HHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcC-CEEEEeEEEeC-CCCHHHHHHHHHHHHhCCCCE
Q ss_pred eecccccc
Q 019000 184 MEWSLLTR 191 (347)
Q Consensus 184 ~~~n~~~~ 191 (347)
+.++.+.+
T Consensus 204 i~l~~l~p 211 (296)
T TIGR00433 204 VPINFLVK 211 (296)
T ss_pred EEeeeeEE
No 226
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.14 E-value=2.1e+02 Score=25.55 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHH-HHHcCccceEecCCC-C----HHHHH---HHhhcCCccee
Q 019000 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKM-LVVEGKIKYIGLSEA-S----PDTIR---RAHAVHPITAV 182 (347)
Q Consensus 112 ~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~-l~~~G~Ir~iGvS~~-~----~~~l~---~~~~~~~~~~v 182 (347)
.+.++..|+-+| +|||++=+-|-......++.++..-+ +++-|.--+.| ..+ . ...++ +.++.-.|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 456777888888 99999999987655444445554444 45566655666 211 0 11122 22333457777
Q ss_pred eeeccccccch--hhhHHHHHHHhCCcEEe
Q 019000 183 QMEWSLLTRDI--EEEIIPLCRELGIGIVP 210 (347)
Q Consensus 183 q~~~n~~~~~~--~~~l~~~~~~~gi~v~a 210 (347)
.+.-..+.-.. ..++++.++++|..+.+
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 77655444332 24688888888877664
No 227
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=27.14 E-value=3.2e+02 Score=25.21 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhHh---CCCcccEE------EecCCCCCCCHHHHHHHHHHHHHcCccce----EecCCCCHHHHHH
Q 019000 106 GTPEYVRSCCEASLKRL---GVDYIDLY------YQHRVDPSVPIEDTIGELKMLVVEGKIKY----IGLSEASPDTIRR 172 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL---~~d~iDl~------~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~----iGvS~~~~~~l~~ 172 (347)
.+++.++......++.+ |+.|+|+. .-|..+.....+...+++++.+++-.|+. .+..+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred Hhh---------cCCcceeeeeccccccchhhhHHHHHHHhCCcEEec
Q 019000 173 AHA---------VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 173 ~~~---------~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (347)
.++ ...++..-.+... .......+++.|+++|+.+..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHHHHHHHHHHHHCCCceEEe
No 228
>COG0218 Predicted GTPase [General function prediction only]
Probab=26.99 E-value=4.2e+02 Score=23.00 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=74.1
Q ss_pred ccccccccccccCCCCCCCCHHHHHHHHHHHHH------cCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeec
Q 019000 21 VSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFN------KGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGV 94 (347)
Q Consensus 21 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~------~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~ 94 (347)
|=.-|||-+.... .-.+...+++...++ ..+-.+|.-..-- ..+..+=+++......=+++.||+-
T Consensus 75 VDlPGYGyAkv~k-----~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~D- 146 (200)
T COG0218 75 VDLPGYGYAKVPK-----EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKAD- 146 (200)
T ss_pred EeCCCcccccCCH-----HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEccc-
Confidence 3345777665321 123344566666554 3555677553322 4567788888877778889999985
Q ss_pred ccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccE--EEecCCCCCCCHHHHHHHHHHHHH
Q 019000 95 VSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDL--YYQHRVDPSVPIEDTIGELKMLVV 153 (347)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl--~~lH~~~~~~~~~~~~~~l~~l~~ 153 (347)
........+.+....+.|+.+.-|- +.+........+++++..+.+...
T Consensus 147 ----------Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 147 ----------KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ----------cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 3356677788889999998777765 445544444567888888777654
No 229
>TIGR00035 asp_race aspartate racemase.
Probab=26.99 E-value=3.7e+02 Score=23.50 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCC------------CCHHHHHHHHHHHHHcCccceEecCCCCHHH
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS------------VPIEDTIGELKMLVVEGKIKYIGLSEASPDT 169 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~------------~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~ 169 (347)
+.+.+++-++.+=.+.+-++++++.+++|+.. .....+.+.++.|.+.| +.+|-+...+...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 45666777777777888999999999998531 12234566666776655 7899998776655
No 230
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=26.89 E-value=3.1e+02 Score=21.45 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhHhC--CCcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019000 107 TPEYVRSCCEASLKRLG--VDYIDLYYQHRVDPS-VPIEDTIGELKMLVVE 154 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~--~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (347)
.+..+++.+.++++... ....|++++..+... .+..++.+.|..|.+.
T Consensus 60 ~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 60 ERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred hhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 57788888888886554 245799999988643 4566666666665443
No 231
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=26.81 E-value=4.4e+02 Score=23.16 Aligned_cols=97 Identities=14% Similarity=0.252 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCcc------ceEecCCCC-HHHHHHHhhcCCccee
Q 019000 110 YVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKI------KYIGLSEAS-PDTIRRAHAVHPITAV 182 (347)
Q Consensus 110 ~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~I------r~iGvS~~~-~~~l~~~~~~~~~~~v 182 (347)
.....++..-+--.-..|+-+++-..+......|-+...++|.+.|.- -+-|+++.+ .-+..+......+.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 445566666666777789999999888778888999999999999863 355666542 2233333333444444
Q ss_pred eeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 183 QMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 183 q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
--.|+. +..+=.|+.+||.-+++.
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFA 180 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEec
Confidence 333332 457788999999988764
No 232
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.22 E-value=5.5e+02 Score=24.11 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCc
Q 019000 38 PVSEEDGISIIKHAFNKGITFFDTA 62 (347)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA 62 (347)
..+.++..+++...-+.||..++.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3478888999999999999999984
No 233
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=26.20 E-value=6.1e+02 Score=24.58 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--ccceEec-C-CCCHHHHHHHhhcCCcce
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGL-S-EASPDTIRRAHAVHPITA 181 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~Ir~iGv-S-~~~~~~l~~~~~~~~~~~ 181 (347)
++++...+-+.+-++. .+++++-.|-+..+ |+.+.+|.++- .+.-.|= + .++++.+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 3455554444444443 45778887765444 55566666662 3432222 1 247899999999888899
Q ss_pred eeeecccccc-chhhhHHHHHHHhCCcEEe
Q 019000 182 VQMEWSLLTR-DIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 182 vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a 210 (347)
+|+..|-.-. ....++...|+.+|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 9988775432 1236788999999999865
No 234
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=25.89 E-value=5.4e+02 Score=23.87 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=60.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCcc-ceEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhC
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKI-KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELG 205 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~I-r~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~g 205 (347)
.++.++-.|-+.. .++.+.+|++.-.+ -+.|=|-++...+.++++....+++|+.....-. -.++.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 5777777775433 35666667665433 3667777889999999888788888887765433 246788999999
Q ss_pred CcEEecccCccc
Q 019000 206 IGIVPYSPLGRG 217 (347)
Q Consensus 206 i~v~a~spl~~G 217 (347)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999987665544
No 235
>PRK05406 LamB/YcsF family protein; Provisional
Probab=25.89 E-value=2.5e+02 Score=25.26 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=47.2
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCC-ccc
Q 019000 25 GFGCMGLTGMYNSPVSEEDGISIIKHAF-NKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAP-TSV 102 (347)
Q Consensus 25 glG~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~-~~~ 102 (347)
+||.|.+| ++++.-.+|..|- .+|. +.| ....+-+.++-.....|-|-..-+++...+ +.-
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 67888775 4555666665553 3332 555 566666666543455666666555443221 222
Q ss_pred cCCCCHHHHHHHHHHHHhHh
Q 019000 103 IVKGTPEYVRSCCEASLKRL 122 (347)
Q Consensus 103 ~~~~~~~~i~~~le~SL~rL 122 (347)
..+.+++.++.++...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 34668888888776666655
No 236
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.71 E-value=2.5e+02 Score=24.22 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=54.8
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeecc-cccc
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWS-LLTR 191 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n-~~~~ 191 (347)
+++-+.|.. .-..+..+.+.. .-+...+|.+.|- ..+-++-.+.+.|.++++-....++..... .-..
T Consensus 12 ~~v~~~L~~---~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 12 RSVVRALLS---AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp HHHHHHHHH---TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred HHHHHHHHh---CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 444444444 345677777653 1123455666776 456666668888988887544333322222 1112
Q ss_pred chhhhHHHHHHHhCCcEEecccCccc
Q 019000 192 DIEEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 192 ~~~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
.....+++.|++.||..+.+|-++..
T Consensus 81 ~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhHHHhhhccccceEEEEEeccc
Confidence 23478999999999999999888754
No 237
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.65 E-value=5e+02 Score=24.39 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=66.8
Q ss_pred HhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCcc
Q 019000 78 LKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKI 157 (347)
Q Consensus 78 l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~I 157 (347)
+....|+++=++|+++......+-+.-..+. .+.+.+-+.+++.| -+..+|.. +.++.....++.+..|++
T Consensus 17 lp~~s~~dvdlst~~~~~~l~~P~~inAM~t-~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~l~ 87 (326)
T PRK05458 17 CIVNSRSECDTSVTLGPRTFKLPVVPANMQT-IIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQGLI 87 (326)
T ss_pred CCCCCHHHcccceEECCcEecCcEEEecccc-hhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhccccccE
Confidence 3334788888899886322111000011222 78888888888887 45677873 234444444555556776
Q ss_pred ceEecCC--CCHHHHHHHhhcC-CcceeeeeccccccchhhhHHHHHHHh--CCcEEe
Q 019000 158 KYIGLSE--ASPDTIRRAHAVH-PITAVQMEWSLLTRDIEEEIIPLCREL--GIGIVP 210 (347)
Q Consensus 158 r~iGvS~--~~~~~l~~~~~~~-~~~~vq~~~n~~~~~~~~~l~~~~~~~--gi~v~a 210 (347)
-.++++. ...+++.++++.. ..+++++...--+.....+++...+++ ++.|++
T Consensus 88 v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 88 ASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 6555554 2334455555542 347787754443322234555555544 355555
No 238
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=25.59 E-value=93 Score=22.77 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=22.4
Q ss_pred hhHHHHHHHhCCcEEecccCccccC
Q 019000 195 EEIIPLCRELGIGIVPYSPLGRGLL 219 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~L 219 (347)
..+++.++++||.++-..+|+.-+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 6799999999999999999997664
No 239
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.56 E-value=2.7e+02 Score=27.20 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHHHHHHcCccceEecCCCCHHHHHHHhhc--------CCcceeeeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 146 GELKMLVVEGKIKYIGLSEASPDTIRRAHAV--------HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 146 ~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~--------~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
+....+-+.|-+..+|..+.+++++++.+.. .||-+|.+ .++-+...+.++++.+.++||.++.-+
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEec
Confidence 3344556699999999999999988765443 24444443 222222234678999999999877654
No 240
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.36 E-value=4.1e+02 Score=22.67 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhHhCCC--cccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCC--HHHHHHHhhcCCcceeeee
Q 019000 110 YVRSCCEASLKRLGVD--YIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEAS--PDTIRRAHAVHPITAVQME 185 (347)
Q Consensus 110 ~i~~~le~SL~rL~~d--~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~--~~~l~~~~~~~~~~~vq~~ 185 (347)
.....+.+.+++.+.. .+=+-+ .............+.++.|++.|- .+.+.++. ...+..+.. .+++.+-+.
T Consensus 100 ~~~~~l~~~l~~~~~~~~~lvlei-~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~-l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRLELEI-TESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR-LPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHEEEEE-eChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh-CCCCeEEEC
Confidence 3456667777776654 222222 111112233445688999999996 46666653 233333333 346666555
Q ss_pred cccccc--------chhhhHHHHHHHhCCcEEec
Q 019000 186 WSLLTR--------DIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 186 ~n~~~~--------~~~~~l~~~~~~~gi~v~a~ 211 (347)
.++... ..-..++..|+..|+.+++-
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 444321 12267889999999999884
No 241
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=25.29 E-value=2.4e+02 Score=22.53 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCeEeCccCCCC--------Cc----------hHHHHHHHHhcCCCCCeEEEeeee
Q 019000 45 ISIIKHAFNKGITFFDTADVYGA--------HA----------NEVLVGKVLKQLPRKKIQLASKFG 93 (347)
Q Consensus 45 ~~~l~~A~~~Gin~~DTA~~Yg~--------g~----------sE~~lG~~l~~~~R~~v~i~tK~~ 93 (347)
...+..+++.|+|+||---.++. |. .-..+.+++...+.+-|++.-|-.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~ 97 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENH 97 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhh
Confidence 46888999999999985433321 11 113344445444667777777754
No 242
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=25.28 E-value=62 Score=20.76 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHhccCC
Q 019000 255 VENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMM 302 (347)
Q Consensus 255 l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~enl~a~~~ 302 (347)
|++||+..|+|++.+.- +|+.+ .-++..+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~----~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGP----PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTC----SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHH--HHhCC----CCCCHHHHHHHHHHHHHHCC
Confidence 67899999999988654 44544 23455566777776665554
No 243
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=25.26 E-value=4.4e+02 Score=25.02 Aligned_cols=88 Identities=9% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEecCC-----------CCCCCHHHHHHHHHHHHHcCccceEec----------CCCCHHHHHHHhhcCCcceeeeeccc
Q 019000 130 YYQHRV-----------DPSVPIEDTIGELKMLVVEGKIKYIGL----------SEASPDTIRRAHAVHPITAVQMEWSL 188 (347)
Q Consensus 130 ~~lH~~-----------~~~~~~~~~~~~l~~l~~~G~Ir~iGv----------S~~~~~~l~~~~~~~~~~~vq~~~n~ 188 (347)
+-||.| ....++++.+++.+....... +.|-+ |...+..|.+++...+..++.++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Q ss_pred cccch--------hhhHHHHHHHhCCcEEecccCcccc
Q 019000 189 LTRDI--------EEEIIPLCRELGIGIVPYSPLGRGL 218 (347)
Q Consensus 189 ~~~~~--------~~~l~~~~~~~gi~v~a~spl~~G~ 218 (347)
..... -....+...++||.+....+-+..+
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
No 244
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.19 E-value=5.9e+02 Score=24.09 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCCCeEEEeeeecccCC------CccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecC-CCCCCCHHHHHHHHHHHHHc
Q 019000 82 PRKKIQLASKFGVVSMA------PTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDTIGELKMLVVE 154 (347)
Q Consensus 82 ~R~~v~i~tK~~~~~~~------~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~~ 154 (347)
.|-.++|+|-+|....- ........+++.|..++....+.++. .++-+.+-. =.+....+.+.++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 36667777776654332 11223357899999999988777652 355444433 33444567889999998875
Q ss_pred -Cc-cceEecCCC-CHHHHHHHhhcC------Ccceeeeeccccccchh----------------hhHHHHHHHhCCcEE
Q 019000 155 -GK-IKYIGLSEA-SPDTIRRAHAVH------PITAVQMEWSLLTRDIE----------------EEIIPLCRELGIGIV 209 (347)
Q Consensus 155 -G~-Ir~iGvS~~-~~~~l~~~~~~~------~~~~vq~~~n~~~~~~~----------------~~l~~~~~~~gi~v~ 209 (347)
|. .|.|-+|+. -+..++++.+.. ....+.+.+|..+.... ..+.++..+.|..|.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 33 356667765 344566665433 11234454444443111 234455666677776
Q ss_pred ecccCccc
Q 019000 210 PYSPLGRG 217 (347)
Q Consensus 210 a~spl~~G 217 (347)
.--||-.|
T Consensus 258 iey~LIpG 265 (345)
T PRK14457 258 FEYILLGG 265 (345)
T ss_pred EEEEEECC
Confidence 66666655
No 245
>PRK00077 eno enolase; Provisional
Probab=24.94 E-value=6.5e+02 Score=24.51 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--ccceEecCC--CCHHHHHHHhhcCCcce
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~Ir~iGvS~--~~~~~l~~~~~~~~~~~ 181 (347)
++++...+.+.+.++. .++++|-.|-+.. -|+.+.+|.++- +|.-.|=-. .+++.+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 4566665555555554 4577788775443 355566666653 454333322 36899999999888899
Q ss_pred eeeecccccc-chhhhHHHHHHHhCCcEEe
Q 019000 182 VQMEWSLLTR-DIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 182 vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a 210 (347)
+|+..|-.-. ....++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9998775432 1236789999999998665
No 246
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.93 E-value=4.1e+02 Score=23.73 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.0
Q ss_pred hhHHHHHHHhCCcEEec
Q 019000 195 EEIIPLCRELGIGIVPY 211 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~ 211 (347)
...++.|++.|+.++..
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 67899999999999875
No 247
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.89 E-value=2.6e+02 Score=25.72 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=51.2
Q ss_pred hhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHHHHHhcCC------CHH
Q 019000 194 EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPA 267 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~ 267 (347)
+..+.+.+.+-.+-++.-++=.+. -.+|.++|++.|. ++.
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSN----------------------------------s~rL~eiA~~~g~~aylId~~~ 248 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSN----------------------------------SNRLAEIAKRHGKPAYLIDDAE 248 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCcc----------------------------------HHHHHHHHHHhCCCeEEeCChH
Confidence 466778888877777765443321 0389999999987 578
Q ss_pred HHHHHHHHhCCCCcEEecCCCCHHHHHHHHh
Q 019000 268 QLSLAWLLRQGDDIVPIPGTTKIKNLDENIG 298 (347)
Q Consensus 268 q~al~w~l~~~~v~~~i~g~~~~~~l~enl~ 298 (347)
++=..|+-... .+.+-.|+|+|+-|-+++-
T Consensus 249 ei~~~w~~~~~-~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 249 EIDPEWLKGVK-TVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred hCCHHHhcCcc-EEEEecCCCCCHHHHHHHH
Confidence 88899987744 3677899999998877663
No 248
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=24.77 E-value=3.7e+02 Score=24.84 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCccceEecCCCCHHHHH--HHhhcCCcc
Q 019000 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS----VPIEDTIGELKMLVVEGKIKYIGLSEASPDTIR--RAHAVHPIT 180 (347)
Q Consensus 107 ~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~--~~~~~~~~~ 180 (347)
..+.+++.|.+-+++.|+|++=++.+-.-... .....++++|++..+++.-. + ++..+- .++. ....
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~-~g~~ 202 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALE-AGVP 202 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHH-TTEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHH-CCCC
Confidence 35678899999999999886655554433221 12335788888888876532 2 222221 1122 2222
Q ss_pred eeeeeccccccchhhhHHHHHHHhCCcEEec---ccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHHHHHHHH
Q 019000 181 AVQMEWSLLTRDIEEEIIPLCRELGIGIVPY---SPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVEN 257 (347)
Q Consensus 181 ~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~---spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (347)
++ .+.+-.-.....+.+.++++|+.+..- +|++.| ..--+-++.+
T Consensus 203 fv--N~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAAp------------------------------lvlDLirl~~ 250 (295)
T PF07994_consen 203 FV--NGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAP------------------------------LVLDLIRLAK 250 (295)
T ss_dssp EE--E-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHH------------------------------HHHHHHHHHH
T ss_pred eE--eccCccccCCHHHHHHHHHcCCCeecchHhhhhhhH------------------------------HHHHHHHHHH
Confidence 22 122222111257999999999987652 222222 2333457889
Q ss_pred HHHhcCCCHHHHHHHHHHhCCCCcEEecCCCCHHHH
Q 019000 258 LAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNL 293 (347)
Q Consensus 258 ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l 293 (347)
+|.+.|....+-.++|....|. +=+|......+
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 9999999888889999999884 23555555444
No 249
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=24.67 E-value=6.4e+02 Score=24.30 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=52.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc-CCcceeeeeccccccc-hhhhHHHHHHHhC
Q 019000 128 DLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-HPITAVQMEWSLLTRD-IEEEIIPLCRELG 205 (347)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~-~~~~~vq~~~n~~~~~-~~~~l~~~~~~~g 205 (347)
|-+.+..|. ...++..++.+.+.+.++.+-+...+.+.++++++. ..+.++..+-|+.-+- .-.++.+.|+++|
T Consensus 100 D~Vvv~~p~----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDA----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCC----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 555554432 334555566655555566666665678888877743 2333444455554332 2267999999999
Q ss_pred CcEEecccCccc
Q 019000 206 IGIVPYSPLGRG 217 (347)
Q Consensus 206 i~v~a~spl~~G 217 (347)
+-++.=...+.+
T Consensus 176 i~vIvD~a~a~~ 187 (405)
T PRK08776 176 ALTVVDNTFLSP 187 (405)
T ss_pred CEEEEECCCccc
Confidence 998876655544
No 250
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.58 E-value=3.9e+02 Score=21.84 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred ccceEecCCC--CHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcc
Q 019000 156 KIKYIGLSEA--SPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSF 233 (347)
Q Consensus 156 ~Ir~iGvS~~--~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~ 233 (347)
.+--+|...| ....+.+++....|+++ |.-......+.+..+.++++.++.-|.+.++
T Consensus 16 lvak~GlDgHd~gakvia~~l~d~GfeVi----~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~---------------- 75 (143)
T COG2185 16 LVAKLGLDGHDRGAKVIARALADAGFEVI----NLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG---------------- 75 (143)
T ss_pred EEeccCccccccchHHHHHHHHhCCceEE----ecCCcCCHHHHHHHHHhcCCCEEEEEeccch----------------
Q ss_pred cccCCCCCCCccchhHHHHHHHHHHHHhcCCC
Q 019000 234 LISHPRFTGENLGKNKQIYARVENLAKRNKCT 265 (347)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 265 (347)
.....+.+.+..++.|..
T Consensus 76 --------------h~~l~~~lve~lre~G~~ 93 (143)
T COG2185 76 --------------HLTLVPGLVEALREAGVE 93 (143)
T ss_pred --------------HHHHHHHHHHHHHHhCCc
No 251
>PTZ00081 enolase; Provisional
Probab=24.51 E-value=6.8e+02 Score=24.60 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--ccceEec--CCCCHHHHHHHhhcCCcce
Q 019000 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGL--SEASPDTIRRAHAVHPITA 181 (347)
Q Consensus 106 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~Ir~iGv--S~~~~~~l~~~~~~~~~~~ 181 (347)
.+++.+.+-+.+.++.++ +++|-.|-.. +-|+.+.+|.++- .+.-+|= +..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 466666666666666654 5677766543 3455666666543 5544443 2356899999999888899
Q ss_pred eeeecccccc-chhhhHHHHHHHhCCcEEec
Q 019000 182 VQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 182 vq~~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 211 (347)
+|+..|-.-. ....++...|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 9998885432 12367899999999998773
No 252
>PLN02428 lipoic acid synthase
Probab=24.32 E-value=6.2e+02 Score=24.05 Aligned_cols=158 Identities=12% Similarity=0.195 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-c---CCCCCchHHHHHHHHhcCC-C-CCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTA-D---VYGAHANEVLVGKVLKQLP-R-KKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA-~---~Yg~g~sE~~lG~~l~~~~-R-~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
.+.++..++.+.+.+.|++++=-. . .|-++..+ .+-+.++... + ..+.|..=. +.. ..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L~-pdf--------~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEALV-PDF--------RGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEeC-ccc--------cCC-----
Confidence 356677788888888998866321 1 23322233 3333443321 1 122222210 000 011
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCC-----------CCCHHHHHHHHHHHHHc--Cccc----eEecCCCCHHHHHHHhh
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDP-----------SVPIEDTIGELKMLVVE--GKIK----YIGLSEASPDTIRRAHA 175 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~-----------~~~~~~~~~~l~~l~~~--G~Ir----~iGvS~~~~~~l~~~~~ 175 (347)
++.|++|.-.-+|. +-|+++. ....++.++.++.+++. |..- -+|+ .-+.+++.+.++
T Consensus 195 ---~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 33444443333666 3466643 23467889999999887 7653 2566 446665555433
Q ss_pred c---CCcceeee-ec----------ccccc-chhhhHHHHHHHhCCcEEecccCcc
Q 019000 176 V---HPITAVQM-EW----------SLLTR-DIEEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 176 ~---~~~~~vq~-~~----------n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
. ..++++.+ +| +-+.. .....+-+++.+.|...++.+||-+
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 34444433 22 22211 2236788888899999999888864
No 253
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=24.18 E-value=6.2e+02 Score=24.01 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCCC-chHHHHHHHHhcCCCCCe-EEEeeeecccCCCccccCCCCHHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGAH-ANEVLVGKVLKQLPRKKI-QLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g-~sE~~lG~~l~~~~R~~v-~i~tK~~~~~~~~~~~~~~~~~~~i~~~le 116 (347)
.+.++..+.++.+.+.|++-|=--..-+.- ..-..+-+.++.. ++.+ .+...++ ..+.+.+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~I-k~~~p~i~Iei~-----------~lt~e~~----- 165 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLA-REYFSSLAIEVQ-----------PLNEEEY----- 165 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHH-HHhCCccccccc-----------cCCHHHH-----
Confidence 478999999999999999866422111111 1223455555542 1110 0111111 1245555
Q ss_pred HHHhHhCCCcccEEE----------ecCCCCCCCHHHHHHHHHHHHHcCc
Q 019000 117 ASLKRLGVDYIDLYY----------QHRVDPSVPIEDTIGELKMLVVEGK 156 (347)
Q Consensus 117 ~SL~rL~~d~iDl~~----------lH~~~~~~~~~~~~~~l~~l~~~G~ 156 (347)
+-|+..|++.+-+.+ +|........++.+++++.+++.|.
T Consensus 166 ~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 166 KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 567888877665433 2212233467888999999999885
No 254
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=24.11 E-value=6.3e+02 Score=24.05 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecC--CCCHHHHHHHhhcC--Cc
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS--EASPDTIRRAHAVH--PI 179 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS--~~~~~~l~~~~~~~--~~ 179 (347)
...+++.|.+.++. +.+.|+..+-+.- -.+....+++.+.+.++.+++.- ..++++ ..+.+.+.++.+.+ .+
T Consensus 102 ~~ls~eEI~~~a~~-~~~~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~--p~i~i~~g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 102 KTLDEEEIEREMAA-IKKLGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF--SSVSIEVQPLSEEEYAELVELGLDGV 177 (371)
T ss_pred ccCCHHHHHHHHHH-HHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC--CCceeccCCCCHHHHHHHHHcCCCEE
Confidence 34688888888876 4567887775544 12222246677777777777642 234443 35677777666543 23
Q ss_pred ceeeeecc-----ccc---c--ch--hhhHHHHHHHhCCc
Q 019000 180 TAVQMEWS-----LLT---R--DI--EEEIIPLCRELGIG 207 (347)
Q Consensus 180 ~~vq~~~n-----~~~---~--~~--~~~l~~~~~~~gi~ 207 (347)
...|-.+| -+. + .. ..+.++.+++.|+.
T Consensus 178 ~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred EEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 33333332 121 1 11 14577888888875
No 255
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=23.97 E-value=1.6e+02 Score=29.44 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCeEe--CccCC---CC-----CchHHHHHHHHhcC---CCCCeEEEeeeecccCCCc---------ccc
Q 019000 46 SIIKHAFNKGITFFD--TADVY---GA-----HANEVLVGKVLKQL---PRKKIQLASKFGVVSMAPT---------SVI 103 (347)
Q Consensus 46 ~~l~~A~~~Gin~~D--TA~~Y---g~-----g~sE~~lG~~l~~~---~R~~v~i~tK~~~~~~~~~---------~~~ 103 (347)
+-.+...+.|+..+- ||-.| |. |.-|.++-.+=+.. .+-++||++=+|.-.+... ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 456667788887664 66544 21 33444443332222 6778999988875432110 112
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV 176 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~ 176 (347)
...+++.|+ +|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--++.++++.+.
T Consensus 186 vEvd~~ri~-------kR~~~g~ld~~-------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 186 VEVDPSRIE-------KRLEQGYLDEV-------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp EES-HHHHH-------HHHHTTSSSEE-------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT
T ss_pred EEECHHHHH-------HHHhCCCeeEE-------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc
Confidence 334555554 47778899964 246899999999999999999999988788888888776
No 256
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.91 E-value=3.6e+02 Score=24.03 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCcceeeeeccc-------cccchhhhHHHHHHHhCCcEEecccCcc
Q 019000 167 PDTIRRAHAVHPITAVQMEWSL-------LTRDIEEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 167 ~~~l~~~~~~~~~~~vq~~~n~-------~~~~~~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
.++.-+.+....++.+++..+. +......++.+.++++||.+.++.|...
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 3444444444566666663211 1111236788899999999999887553
No 257
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=23.85 E-value=3.6e+02 Score=21.20 Aligned_cols=63 Identities=6% Similarity=-0.013 Sum_probs=42.6
Q ss_pred CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC---CcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019000 82 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV---DYIDLYYQHRVDPS-VPIEDTIGELKMLVVE 154 (347)
Q Consensus 82 ~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (347)
+|==+.|+-|+|.- ..+..+++.|.++.+.+.. .-.|++++-.+... .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 34446667776643 3577888888888887764 34799999887654 4667777777665543
No 258
>PRK12569 hypothetical protein; Provisional
Probab=23.72 E-value=3.1e+02 Score=24.66 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=49.5
Q ss_pred ccccccccCCCCCCCC--HHHHHHHHHHHH-HcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCC-c
Q 019000 25 GFGCMGLTGMYNSPVS--EEDGISIIKHAF-NKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAP-T 100 (347)
Q Consensus 25 glG~~~~~~~~~~~~~--~~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~-~ 100 (347)
+||.|.+| + +++.-.+|..|- .+|. +.| ....+-+.++-.....|-|-..-+++...+ +
T Consensus 14 sfG~~~~g-------~~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFG 76 (245)
T PRK12569 14 GFGPWRIG-------DGVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFG 76 (245)
T ss_pred CCCCcCCC-------CccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCC
Confidence 67888875 4 566666666653 3343 566 566777777544556666666655543321 2
Q ss_pred cccCCCCHHHHHHHHHHHHhHhC
Q 019000 101 SVIVKGTPEYVRSCCEASLKRLG 123 (347)
Q Consensus 101 ~~~~~~~~~~i~~~le~SL~rL~ 123 (347)
.-....+++.++.++...+..|+
T Consensus 77 Rr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 77 RRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 22345688888887776666663
No 259
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=23.66 E-value=4.3e+02 Score=22.83 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=53.6
Q ss_pred HhHhCCCcccEEEec-CCCC-CCCHHH----HHHHHHHHHH--cCccceEecCCCCHHHHHHHhhcCCcceeeeeccccc
Q 019000 119 LKRLGVDYIDLYYQH-RVDP-SVPIED----TIGELKMLVV--EGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLT 190 (347)
Q Consensus 119 L~rL~~d~iDl~~lH-~~~~-~~~~~~----~~~~l~~l~~--~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~ 190 (347)
+..-|.|+||+---- +|.. ..+.++ +...++.+++ .+. -|.+-++.++.++++++. ..+.+-...+. .
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-E 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-S
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-c
Confidence 344578999985322 2221 122333 3444555554 232 467778899999999987 44443222222 1
Q ss_pred cchhhhHHHHHHHhCCcEEecccC
Q 019000 191 RDIEEEIIPLCRELGIGIVPYSPL 214 (347)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a~spl 214 (347)
. ..++++.++++|..++++.--
T Consensus 104 ~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S--STTHHHHHHHHTSEEEEESES
T ss_pred c--cchhhhhhhcCCCEEEEEecc
Confidence 1 468999999999999987543
No 260
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.42 E-value=6.4e+02 Score=23.88 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEecCC-----------CCCCCHHHHHHHHHHHHHcCccc----eEecCCCCH-----HHHHHHhhcCCcceeeeecccc
Q 019000 130 YYQHRV-----------DPSVPIEDTIGELKMLVVEGKIK----YIGLSEASP-----DTIRRAHAVHPITAVQMEWSLL 189 (347)
Q Consensus 130 ~~lH~~-----------~~~~~~~~~~~~l~~l~~~G~Ir----~iGvS~~~~-----~~l~~~~~~~~~~~vq~~~n~~ 189 (347)
+-||.| ....+++++++++.++.++-+-+ ++=+.+++- +.+.+++...+..++.++||.-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Q ss_pred ccchh-------hhHHHHHHHhCCcEEecccCcc
Q 019000 190 TRDIE-------EEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 190 ~~~~~-------~~l~~~~~~~gi~v~a~spl~~ 216 (347)
..... ....+..+++||.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 261
>PHA02128 hypothetical protein
Probab=23.39 E-value=2.3e+02 Score=21.86 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCccceEecCCCCHHHHHHHh-----------------hcCC-cceeee---eccccccchhhhHHHHH
Q 019000 143 DTIGELKMLVVEGKIKYIGLSEASPDTIRRAH-----------------AVHP-ITAVQM---EWSLLTRDIEEEIIPLC 201 (347)
Q Consensus 143 ~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~-----------------~~~~-~~~vq~---~~n~~~~~~~~~l~~~~ 201 (347)
..+....++..+|-+|-|-+...+..++.... +..| +.+.++ +|.+-.+...+++.+++
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 45666778888999998888765554444332 2222 233333 56666665568999999
Q ss_pred HHhCCcEEec
Q 019000 202 RELGIGIVPY 211 (347)
Q Consensus 202 ~~~gi~v~a~ 211 (347)
-.+|+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999988764
No 262
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.31 E-value=4e+02 Score=25.26 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCCeEEEeeeecccCCC------ccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecC-CCCCCCHHHHHHHHHHHHHcC
Q 019000 83 RKKIQLASKFGVVSMAP------TSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDTIGELKMLVVEG 155 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~------~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~~G 155 (347)
|..+.|||-+|....-. .......+.+.|..++...-+. +.++-+.+-. -.|....++++++++.+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 55566776665543310 1223457889999988866322 2344444433 233345678999999998764
Q ss_pred cc----ceEecCCCCH-HHHHHHhhcCCcceeeeeccc
Q 019000 156 KI----KYIGLSEASP-DTIRRAHAVHPITAVQMEWSL 188 (347)
Q Consensus 156 ~I----r~iGvS~~~~-~~l~~~~~~~~~~~vq~~~n~ 188 (347)
-. |.|-||+-.. ..+.++.+..+ ..+.+.++.
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLha 215 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLHS 215 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcCC
Confidence 44 6788887654 34666555333 233444443
No 263
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=23.29 E-value=1.8e+02 Score=24.50 Aligned_cols=64 Identities=23% Similarity=0.224 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHhCCCc----ccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc
Q 019000 111 VRSCCEASLKRLGVDY----IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV 176 (347)
Q Consensus 111 i~~~le~SL~rL~~d~----iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~ 176 (347)
.++.++..++++|.+. ++.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3456666777777541 11111111 11123456788899999888 55566888887777666554
No 264
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.26 E-value=1.4e+02 Score=28.51 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHH---HHHHHHhcC-----CCCCeEEEeeeecccCCCccccCCCCHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEV---LVGKVLKQL-----PRKKIQLASKFGVVSMAPTSVIVKGTPEYV 111 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~---~lG~~l~~~-----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i 111 (347)
...+..+.|+.++++|+- ...|+ +++ .+-.|.++. +.+.++++.- +
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~---~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-------------------V 92 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYG---SDELYAAIAHWFKQRHQWEIKPEWIVFVPG-------------------V 92 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCC---CHHHHHHHHHHHHHhcCCCCCcceEEEcCc-------------------c
Confidence 445788999999999973 22344 443 344455442 2222222211 3
Q ss_pred HHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHH------HHH-HcCccceEecCCCCHHHHHHHhhcCCcceeee
Q 019000 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELK------MLV-VEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 112 ~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~------~l~-~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~ 184 (347)
...+...++.| |+.=|-+.++.|-.. ++..+.+.-. .|+ +.|+. ..+-++|++++....+ ...+
T Consensus 93 Vpgi~~~I~~~-T~~gd~Vvi~tPvY~-PF~~~i~~n~R~~i~~pL~~~~~~y------~iD~~~LE~~~~~~~v-kl~i 163 (388)
T COG1168 93 VPGISLAIRAL-TKPGDGVVIQTPVYP-PFYNAIKLNGRKVIENPLVEDDGRY------EIDFDALEKAFVDERV-KLFI 163 (388)
T ss_pred hHhHHHHHHHh-CcCCCeeEecCCCch-HHHHHHhhcCcEEEeccccccCCcE------EecHHHHHHHHhcCCc-cEEE
Confidence 33444444444 355577888877432 2211111100 011 12211 1266777777665542 2445
Q ss_pred eccccccc-------hhhhHHHHHHHhCCcEEe---cccC
Q 019000 185 EWSLLTRD-------IEEEIIPLCRELGIGIVP---YSPL 214 (347)
Q Consensus 185 ~~n~~~~~-------~~~~l~~~~~~~gi~v~a---~spl 214 (347)
-+|+.++. ....+.+.|++|||.||+ +.+|
T Consensus 164 LCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDl 203 (388)
T COG1168 164 LCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADL 203 (388)
T ss_pred EeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccc
Confidence 56666552 126799999999999997 4454
No 265
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=23.03 E-value=1.1e+03 Score=26.54 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=55.5
Q ss_pred HhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc-Ccc--ceEecCCCCHHHHHHHhhcCCcceeeeecccccc-chhhh
Q 019000 121 RLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE-GKI--KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEE 196 (347)
Q Consensus 121 rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~-G~I--r~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~~~ 196 (347)
.-|-+.||+-.= ....+.++.++.+..+.++ -.+ --|-+-++.++.++.+++..+=..+-+..|.... ....+
T Consensus 379 e~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~ 455 (1178)
T TIGR02082 379 ENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIE 455 (1178)
T ss_pred HCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHH
Confidence 558899998642 1223445555555544443 222 2366778899999999987322234455555431 11247
Q ss_pred HHHHHHHhCCcEEecc
Q 019000 197 IIPLCRELGIGIVPYS 212 (347)
Q Consensus 197 l~~~~~~~gi~v~a~s 212 (347)
+++.|++.|..++.+.
T Consensus 456 ~~~l~~~yga~vV~m~ 471 (1178)
T TIGR02082 456 TAKLIKEYGAAVVVMA 471 (1178)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 9999999999999974
No 266
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=23.03 E-value=5.6e+02 Score=23.04 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH---HhHh
Q 019000 46 SIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS---LKRL 122 (347)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S---L~rL 122 (347)
++++.|++.|..++-.-..- .+ . ..+-+.+++ ..-.+++...-+..........+..-.+.+.+.+++. +++.
T Consensus 87 ~v~e~al~~G~~iINdisg~-~~-~-~~~~~l~~~-~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 162 (257)
T cd00739 87 EVARAALEAGADIINDVSGG-SD-D-PAMLEVAAE-YGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESA 162 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCC-CC-C-hHHHHHHHH-cCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 45667777776666422211 11 1 233445554 2334555433221110000000011123444555544 4455
Q ss_pred CCC----cccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCC
Q 019000 123 GVD----YIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEAS 166 (347)
Q Consensus 123 ~~d----~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~ 166 (347)
|++ ++|-..- ........-++++.++.+++.|.=-.+|+||-+
T Consensus 163 Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 163 GVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred CCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 665 4454211 111111123568888888888876789999964
No 267
>PRK06298 type III secretion system protein; Validated
Probab=23.02 E-value=75 Score=30.26 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCcEEecccCccccCC
Q 019000 195 EEIIPLCRELGIGIVPYSPLGRGLLG 220 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~L~ 220 (347)
..+.+.|+++||+++..-||++.+..
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~ 318 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLD 318 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 57999999999999999999988753
No 268
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.01 E-value=1.3e+02 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.456 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCcEEecCCCCHHHHHHHHhcc
Q 019000 270 SLAWLLRQGDDIVPIPGTTKIKNLDENIGSL 300 (347)
Q Consensus 270 al~w~l~~~~v~~~i~g~~~~~~l~enl~a~ 300 (347)
.|+.+-+.+--+.+-.|+++.+++++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 4555555544467778999999999998877
No 269
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=22.97 E-value=5.3e+02 Score=22.79 Aligned_cols=151 Identities=17% Similarity=0.222 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCCeEeCccCCCC---CchHHHHHHHHhc---C--CCCCeEEEeeeecccCCCccccCCCCHHHHHHHH
Q 019000 44 GISIIKHAFNKGITFFDTADVYGA---HANEVLVGKVLKQ---L--PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (347)
Q Consensus 44 ~~~~l~~A~~~Gin~~DTA~~Yg~---g~sE~~lG~~l~~---~--~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~l 115 (347)
..+++.+|.+.|+..|=+.++.-. +..++.+-...+. . ..+ +-|.+=+-...-+.+ ..+. .
T Consensus 18 ~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~~G~E~~~~~~~--~~d~--------~ 86 (237)
T COG1387 18 PEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYD-IKILIGIEVDILPDG--SLDF--------L 86 (237)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcC-ceEEEeEEEEecCCC--Cccc--------c
Confidence 456699999999999977766654 4455555444432 1 223 322222211111110 0011 1
Q ss_pred HHHHhHhCCCcccEEEecCCC-CCCCHHHHHHHHHHHHHcCccceEecCCC-------------CHHHHHHHhhcCCcce
Q 019000 116 EASLKRLGVDYIDLYYQHRVD-PSVPIEDTIGELKMLVVEGKIKYIGLSEA-------------SPDTIRRAHAVHPITA 181 (347)
Q Consensus 116 e~SL~rL~~d~iDl~~lH~~~-~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~-------------~~~~l~~~~~~~~~~~ 181 (347)
+.-+..| |+ =+.-+|.+. .........+.+..+...+.|.-||=-+. ..+.+.+++.... .+
T Consensus 87 ~~~~~~l--D~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~a 162 (237)
T COG1387 87 DEILKEL--DY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG-KA 162 (237)
T ss_pred hhhHhhc--CE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-cE
Confidence 1122222 22 245678763 22345667888888899998887776544 1222333333222 23
Q ss_pred eeeeccccccchhhhHHHHHHHhCCcEE
Q 019000 182 VQMEWSLLTRDIEEEIIPLCRELGIGIV 209 (347)
Q Consensus 182 vq~~~n~~~~~~~~~l~~~~~~~gi~v~ 209 (347)
+.+.-+.-.......++..|++.|+.+.
T Consensus 163 leins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 163 LEINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred EeecCCcCccCchHHHHHHHHHhCCeEE
Confidence 3333332233335678889999887764
No 270
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.87 E-value=5.6e+02 Score=23.00 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCCCCC----chH--HHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTADVYGAH----ANE--VLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g----~sE--~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
+|.+...+.++..++.|++-+=..-.-|.+ ..| +++..+.+.. ..++-|..-++.. +.+...
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~-----------~~~~~i 82 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGAN-----------STREAI 82 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCc-----------cHHHHH
Confidence 588899999999999999988654444432 233 3455555442 2344444444322 122111
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCccceEec--------CCCCHHHHHHHhhcCCcceee
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDPSV-PIEDTIGELKMLVVEGKIKYIGL--------SEASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~Ir~iGv--------S~~~~~~l~~~~~~~~~~~vq 183 (347)
+.. +..+.+| +|-+++.-|.... ..+++++.+.++.+.-.+ -|.+ .+.+++.+.++.+. +.++-
T Consensus 83 ~~a-~~a~~~G---ad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~-pi~iYn~P~~tg~~l~~~~~~~L~~~--~~v~g 155 (281)
T cd00408 83 ELA-RHAEEAG---ADGVLVVPPYYNKPSQEGIVAHFKAVADASDL-PVILYNIPGRTGVDLSPETIARLAEH--PNIVG 155 (281)
T ss_pred HHH-HHHHHcC---CCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC-CEEEEECccccCCCCCHHHHHHHhcC--CCEEE
Confidence 111 2235555 4555555553322 345666666666654221 1111 13456666666652 23444
Q ss_pred eeccc
Q 019000 184 MEWSL 188 (347)
Q Consensus 184 ~~~n~ 188 (347)
+.++.
T Consensus 156 iK~s~ 160 (281)
T cd00408 156 IKDSS 160 (281)
T ss_pred EEeCC
Confidence 44444
No 271
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.84 E-value=2.2e+02 Score=24.65 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=31.7
Q ss_pred ceEecCCC-CHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEe
Q 019000 158 KYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 158 r~iGvS~~-~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (347)
-.||+.+. +.++++++++.+. +++. ++ ....+++++|+++||.++.
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA-~Fiv---SP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGA-QFIV---SP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT--SEEE---ES---S--HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCC-CEEE---CC---CCCHHHHHHHHHcCCcccC
Confidence 45888775 8999999888643 2221 22 2247899999999999987
No 272
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.68 E-value=7.1e+02 Score=24.16 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL 119 (347)
+.++..+....+++.|++.|=.--.-......+.+- ++++.-.+++.|..=.. ..++.+...+- +
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~-avRe~vG~~~~L~vDaN----------~~w~~~~A~~~----~ 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCR-LAREVIGPDNKLMIDAN----------QRWDVPEAIEW----V 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH-HHHHhcCCCCeEEEECC----------CCCCHHHHHHH----H
Confidence 445566677777788998875321101001112222 33332222333322211 12355443332 2
Q ss_pred hHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC----ccceEecCCCCHHHHHHHhhcCCcceeeeecccccc-chh
Q 019000 120 KRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG----KIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIE 194 (347)
Q Consensus 120 ~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G----~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~-~~~ 194 (347)
++|. ..++.++-.|-+.. -++.+.+|++.. .=-+.|=|.++.+.+.++++...++++|....-.-. ...
T Consensus 261 ~~L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3332 24566677765433 345566666653 333455567788999999988889999987665432 123
Q ss_pred hhHHHHHHHhCCcEEecc
Q 019000 195 EEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~s 212 (347)
.++...|+.+|+.+..++
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 689999999999987763
No 273
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.53 E-value=5.6e+02 Score=23.50 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=59.1
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHH-----HHHHHHHHHcCccceEecCCCCHH-------HHHHHhhcCCcceeeeec
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDT-----IGELKMLVVEGKIKYIGLSEASPD-------TIRRAHAVHPITAVQMEW 186 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~-----~~~l~~l~~~G~Ir~iGvS~~~~~-------~l~~~~~~~~~~~vq~~~ 186 (347)
++-++-.++|+..+..+.......+. -+.+.++.++--=|++|+.+.++. ++++......+ +++..
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf--~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGF--VGVKL 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCc--eEEEe
Confidence 77788889999998841111111222 246777777777889999877543 34444444444 44444
Q ss_pred cccccc-----h-hhhHHHHHHHhCCcEEecccCc
Q 019000 187 SLLTRD-----I-EEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 187 n~~~~~-----~-~~~l~~~~~~~gi~v~a~spl~ 215 (347)
+...+. . -..+++.|+++|+.|+-+....
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 433332 1 1569999999999998865443
No 274
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=22.45 E-value=58 Score=26.34 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCeEeCcc
Q 019000 46 SIIKHAFNKGITFFDTAD 63 (347)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~ 63 (347)
..+...++.|||+||---
T Consensus 30 ~~i~~QL~~GiR~lDlrv 47 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRV 47 (146)
T ss_dssp HHHHHHHHTT--EEEEEE
T ss_pred HhHHHHHhccCceEEEEE
Confidence 578999999999999543
No 275
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.35 E-value=4.1e+02 Score=21.64 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKV 77 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~ 77 (347)
+...+..+.+.-.++|++.|=.-+.|. .++++|+-
T Consensus 28 P~r~sy~V~kyL~~~GY~ViPVNP~~~---~~eiLG~k 62 (140)
T COG1832 28 PDRPSYRVAKYLQQKGYRVIPVNPKLA---GEEILGEK 62 (140)
T ss_pred CCccHHHHHHHHHHCCCEEEeeCcccc---hHHhcCch
Confidence 556788999999999999998888775 57777753
No 276
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=22.34 E-value=6.7e+02 Score=23.73 Aligned_cols=93 Identities=15% Similarity=0.266 Sum_probs=57.0
Q ss_pred CcccEEE-ecCCCCC-----------CCHHHHHHHHHHHHH-cCc---cceEecC--CCCHHHHHHHhhc---C-----C
Q 019000 125 DYIDLYY-QHRVDPS-----------VPIEDTIGELKMLVV-EGK---IKYIGLS--EASPDTIRRAHAV---H-----P 178 (347)
Q Consensus 125 d~iDl~~-lH~~~~~-----------~~~~~~~~~l~~l~~-~G~---Ir~iGvS--~~~~~~l~~~~~~---~-----~ 178 (347)
.++||.+ ||.+++. .+++++++++.+..+ .|. |+++=+. |.+.+.++++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 4577754 7877432 345677776666555 343 4444443 4455666555443 2 3
Q ss_pred cceeeeeccccccc------h----hhhHHHHHHHhCCcEEecccCccc
Q 019000 179 ITAVQMEWSLLTRD------I----EEEIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 179 ~~~vq~~~n~~~~~------~----~~~l~~~~~~~gi~v~a~spl~~G 217 (347)
..++-++||.+... + -..+.+..+++|+.+......+.-
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 56888899987432 1 145777788889999888777643
No 277
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=22.32 E-value=7.5e+02 Score=24.28 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCC-CCCCHHHHHHHHHHHHHc--CccceEecCCC---CHHHHHHHhhcCC
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVD-PSVPIEDTIGELKMLVVE--GKIKYIGLSEA---SPDTIRRAHAVHP 178 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~-~~~~~~~~~~~l~~l~~~--G~Ir~iGvS~~---~~~~l~~~~~~~~ 178 (347)
..+++.+.+.+++....++ .++.+-|-.+. +....+.+++.+..++++ |. .+.+|+- .++.++++.+. .
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~-g 133 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL-G 133 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-C
Confidence 4688899998888777652 34555566643 333446688889999888 43 4666643 36777777664 3
Q ss_pred cceeeeeccccccchhh---------------------------hHHHHHHHhCCcEEecccCccc
Q 019000 179 ITAVQMEWSLLTRDIEE---------------------------EIIPLCRELGIGIVPYSPLGRG 217 (347)
Q Consensus 179 ~~~vq~~~n~~~~~~~~---------------------------~l~~~~~~~gi~v~a~spl~~G 217 (347)
++.+.+.++-.++.... +-++.+.+.|+.+....++--|
T Consensus 134 vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 134 VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 56677766665542221 2244566778877666666544
No 278
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.28 E-value=4.9e+02 Score=24.56 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=52.8
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCc---cceEecC--CCCHHHHHH---HhhcCCcceeeeeccccc
Q 019000 130 YYQHRVDPS-----------VPIEDTIGELKMLVVEGK---IKYIGLS--EASPDTIRR---AHAVHPITAVQMEWSLLT 190 (347)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~---Ir~iGvS--~~~~~~l~~---~~~~~~~~~vq~~~n~~~ 190 (347)
+-||.+++. .+++++++++..+.+.|+ ++++=+. |.+.+++++ ++...+..++.++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 567876532 357788888888877654 2344333 334555444 444445688999999854
Q ss_pred cc----hh---hhHHHHH--HHhCCcEEecccCcc
Q 019000 191 RD----IE---EEIIPLC--RELGIGIVPYSPLGR 216 (347)
Q Consensus 191 ~~----~~---~~l~~~~--~~~gi~v~a~spl~~ 216 (347)
.. .. ....+.. +++||.+......+.
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 32 12 2344555 356888887776654
No 279
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.04 E-value=4.3e+02 Score=21.62 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCC-CC-----chHHHHHHHHhcCC-CCCeEEEeeeecccCCCccccCCCCHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYG-AH-----ANEVLVGKVLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g-----~sE~~lG~~l~~~~-R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (347)
-++...+.++.|++.|.+.|++--..- +| +.-..+-++|+..+ +-.++|=.|.... .+.+.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~ 78 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLE 78 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHH
Confidence 457788999999999999886443321 11 01122333333322 1224444443211 22344
Q ss_pred HHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccc
Q 019000 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRD 192 (347)
Q Consensus 113 ~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~ 192 (347)
+.+-+.+++.+. .+-+++...+. +.+..+.+...+=++..+--+...............++.+...+..+
T Consensus 79 ~~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 148 (189)
T cd08556 79 AKVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLL--- 148 (189)
T ss_pred HHHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhC---
Confidence 555555555552 23333433321 23333333222211222211111111110112223344555554432
Q ss_pred hhhhHHHHHHHhCCcEEeccc
Q 019000 193 IEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 193 ~~~~l~~~~~~~gi~v~a~sp 213 (347)
...+++.|+++|+.+.+|..
T Consensus 149 -~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 149 -TPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred -CHHHHHHHHHcCCEEEEEcC
Confidence 35789999999999999853
No 280
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.94 E-value=4.6e+02 Score=22.29 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=52.2
Q ss_pred CccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhc---C-CCCCeEEEeeee
Q 019000 18 GLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQ---L-PRKKIQLASKFG 93 (347)
Q Consensus 18 g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~---~-~R~~v~i~tK~~ 93 (347)
|+.+--|||+.... =+.+..++|.. ++.-+-.+|+.++...-.=++.+-.+++. . +.-.|++++-+.
T Consensus 33 ~~~~iNLGfsG~~~--------le~~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 33 GLDVINLGFSGNGK--------LEPEVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp T-EEEEEE-TCCCS----------HHHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred CCCeEeeeecCccc--------cCHHHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 45555556554321 22333444443 36666677776664432223444445543 2 667788888776
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHhHhC-CCcccEEEecCCC
Q 019000 94 VVSMAPTSVIVKGTPEYVRSCCEASLKRLG-VDYIDLYYQHRVD 136 (347)
Q Consensus 94 ~~~~~~~~~~~~~~~~~i~~~le~SL~rL~-~d~iDl~~lH~~~ 136 (347)
.....- ........+..++.+++..+.|. -..=+||+++..+
T Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 104 YPAGYF-DNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -TTTTS---TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred cccccc-CchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 554321 11123456788888888888882 2355788888654
No 281
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.81 E-value=7.7e+02 Score=24.24 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=69.1
Q ss_pred cCCCCCchHHHHHHHHhcC----CCC-CeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCC
Q 019000 63 DVYGAHANEVLVGKVLKQL----PRK-KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP 137 (347)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~~----~R~-~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~ 137 (347)
-.|| .|+.|-+++++. ++- =++|.|-+....- -+++..-+++.-++.+ .+.++.+|.|..
T Consensus 104 iVfG---ge~kL~~aI~e~~~~~p~p~~I~V~stC~~~lI----------GDDi~~v~~e~~~~~~--~~pvv~v~t~gf 168 (457)
T TIGR01284 104 VVFG---GEKKLKRCILEAFREFPEIKRMYTYATCTTALI----------GDDIDAIAREVMEEIP--DVDVFAINAPGF 168 (457)
T ss_pred eEec---HHHHHHHHHHHHHHhCCCCceEEEECCChHHhh----------ccCHHHHHHHHHHhcC--CCeEEEeeCCCc
Confidence 3566 677788887663 322 3667666643221 1223333332222221 267999998875
Q ss_pred CCC--H---HHHHHH-HHHHH--------HcCccceEecCCC--CHHHHHHHhhcCCccee-e---------------ee
Q 019000 138 SVP--I---EDTIGE-LKMLV--------VEGKIKYIGLSEA--SPDTIRRAHAVHPITAV-Q---------------ME 185 (347)
Q Consensus 138 ~~~--~---~~~~~~-l~~l~--------~~G~Ir~iGvS~~--~~~~l~~~~~~~~~~~v-q---------------~~ 185 (347)
... . ..+..+ ++++. ..+.|--||-.+. +.+.++++++...+.++ . -.
T Consensus 169 ~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~ 248 (457)
T TIGR01284 169 AGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAK 248 (457)
T ss_pred CCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccC
Confidence 431 1 122222 23333 2467888886554 34567777766444443 1 12
Q ss_pred cccccc-chhhhHHHHHH-HhCCcEEecccC
Q 019000 186 WSLLTR-DIEEEIIPLCR-ELGIGIVPYSPL 214 (347)
Q Consensus 186 ~n~~~~-~~~~~l~~~~~-~~gi~v~a~spl 214 (347)
.|+... .....+.++.+ +.||.++...|+
T Consensus 249 lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~ 279 (457)
T TIGR01284 249 LNVVRCARSANYIANELEERYGIPRLDIDFF 279 (457)
T ss_pred EEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 333321 11123444444 449999877654
No 282
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=21.80 E-value=1.9e+02 Score=25.31 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNK-GITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~S 118 (347)
+.+++..+.+...+. |+=|...++-|= +-+...+..+..+. .++++-.. +.+.+.+.+ .
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i~~----i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEILE----I 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHHHH----H
Confidence 455555555553443 333444477664 55556655554321 22444432 224444433 3
Q ss_pred HhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHH---cCccceEecCCC
Q 019000 119 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV---EGKIKYIGLSEA 165 (347)
Q Consensus 119 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~---~G~Ir~iGvS~~ 165 (347)
++.+ .+|++|||...+ .+.+++|+. -..+++|.++.-
T Consensus 71 ~~~~---~ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 71 AEEL---GLDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred HHhc---CCCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCc
Confidence 3444 489999999732 233444554 458899999864
No 283
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=21.80 E-value=2.5e+02 Score=21.57 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=30.5
Q ss_pred cCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEeccc
Q 019000 162 LSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 213 (347)
Q Consensus 162 vS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (347)
.+..+.+.+..++... ++++-+-----.+....++.+.++++||++..+..
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 3445666676666543 45544422221112236788999999999988754
No 284
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.75 E-value=3.8e+02 Score=20.62 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEec----CC-CCHHHHHHHhhcCCccee
Q 019000 108 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGL----SE-ASPDTIRRAHAVHPITAV 182 (347)
Q Consensus 108 ~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGv----S~-~~~~~l~~~~~~~~~~~v 182 (347)
+..+...+-++|++||.. .+.++..++.... .....-+.-.++- .+ .+.+.+.++.....++.+
T Consensus 10 rGeia~r~~ra~r~~Gi~---tv~v~s~~d~~s~--------~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i 78 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIE---TVAVNSNPDTVST--------HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAI 78 (110)
T ss_dssp -HHHHHHHHHHHHHTTSE---EEEEEEGGGTTGH--------HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEE
T ss_pred CCHHHHHHHHHHHHhCCc---ceeccCchhcccc--------cccccccceecCcchhhhhhccHHHHhhHhhhhcCccc
Confidence 345667788899999854 4555554332211 2333445555551 22 377888887777777887
Q ss_pred eeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 183 QMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 183 q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
---|..+.- ..++.+.|.+.||.++.-+
T Consensus 79 ~pGyg~lse--~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 79 HPGYGFLSE--NAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp ESTSSTTTT--HHHHHHHHHHTT-EESSS-
T ss_pred ccccchhHH--HHHHHHHHHHCCCEEECcC
Confidence 777777665 4578889999999887643
No 285
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.73 E-value=2.3e+02 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.5
Q ss_pred hhhHHHHHHHhCCcEEecccCcc
Q 019000 194 EEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
+..+.++|++.||.++. |||..
T Consensus 92 ~~~Lke~a~~~Gi~~~S-SPfd~ 113 (347)
T COG2089 92 HAQLKEYARKRGIIFFS-SPFDL 113 (347)
T ss_pred HHHHHHHHHHcCeEEEe-cCCCH
Confidence 46899999999998765 57754
No 286
>PF13518 HTH_28: Helix-turn-helix domain
Probab=21.72 E-value=1e+02 Score=19.48 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Q 019000 254 RVENLAKRNKCTPAQLSLAWLLR 276 (347)
Q Consensus 254 ~l~~ia~~~g~s~~q~al~w~l~ 276 (347)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4677888999988775 777753
No 287
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.63 E-value=4.9e+02 Score=22.27 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHH
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL 119 (347)
+.++...+.+.|.++|..++=|+..|..+.+-.---+.+++.-+..+=|--=.|.. +.+.+.+-++.-.
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGik-----------t~~~~l~~~~~g~ 197 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIR-----------TLEDALAMIEAGA 197 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCC-----------CHHHHHHHHHhCh
Q ss_pred hHhCCC
Q 019000 120 KRLGVD 125 (347)
Q Consensus 120 ~rL~~d 125 (347)
.|+|+.
T Consensus 198 ~riG~s 203 (203)
T cd00959 198 TRIGTS 203 (203)
T ss_pred hhccCC
No 288
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.55 E-value=7e+02 Score=23.62 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHH-cCc---cceEecCCCC-HHHHHHHhh
Q 019000 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV-EGK---IKYIGLSEAS-PDTIRRAHA 175 (347)
Q Consensus 104 ~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~-~G~---Ir~iGvS~~~-~~~l~~~~~ 175 (347)
...+.+.|..++....+..++++| .+.-.-.+....+++.++++.+.+ .|. .+.|-||+-. ...+.++..
T Consensus 129 r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 129 RNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhh
Confidence 456889999888877666554443 333323344566788999998886 564 4677777643 445555544
No 289
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=21.53 E-value=5.5e+02 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC
Q 019000 40 SEEDGISIIKHAFNKGITFFDT 61 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT 61 (347)
-.|.....++.|++.|+..|.+
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3567888999999999998753
No 290
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.51 E-value=7.8e+02 Score=24.17 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCccce----EecCCCCHHHHHHHhhc-CCcceeeeeccccccchhhhHHHHHHHhCCc
Q 019000 139 VPIEDTIGELKMLVVEGKIKY----IGLSEASPDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIPLCRELGIG 207 (347)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~Ir~----iGvS~~~~~~l~~~~~~-~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~ 207 (347)
...++..++++.+++.|.--. +|+-+.+.+.+++.++. .......+.++++.+-+...+.+.++++|+-
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCcHHHHHHHHCCCc
Confidence 345677888888888886332 35566677776665443 1112223345556555567788888887753
No 291
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=21.06 E-value=5.6e+02 Score=24.36 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhc---C----
Q 019000 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV---H---- 177 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~---~---- 177 (347)
..+++.+++-+++.|.+.|++.-| .+.+-+.|-..- .-|+.+|...++...++. .
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~------------A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED------------ARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCCcCC
Confidence 458899999999999999964211 122222222222 357778877776665442 1
Q ss_pred --Cccee-------eeecccc--cc---chhhhHHHHHHHhCCcEEe
Q 019000 178 --PITAV-------QMEWSLL--TR---DIEEEIIPLCRELGIGIVP 210 (347)
Q Consensus 178 --~~~~v-------q~~~n~~--~~---~~~~~l~~~~~~~gi~v~a 210 (347)
.+.++ ++.-+-- +. ..-..+++.|+++||++++
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 12222 2211100 00 1115789999999999876
No 292
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=21.03 E-value=4.5e+02 Score=28.46 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhHhCC-Cc-------------------------ccEEEecCCCCCCC---HHHHHHHHHHHHHcC
Q 019000 105 KGTPEYVRSCCEASLKRLGV-DY-------------------------IDLYYQHRVDPSVP---IEDTIGELKMLVVEG 155 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL~~-d~-------------------------iDl~~lH~~~~~~~---~~~~~~~l~~l~~~G 155 (347)
...+.++++.++..|+.++. +| ..+++|..|....| ....|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 34567889999999998873 33 45667777765544 357999999999999
Q ss_pred ccceEecCCCCHHHHHHHhhcC
Q 019000 156 KIKYIGLSEASPDTIRRAHAVH 177 (347)
Q Consensus 156 ~Ir~iGvS~~~~~~l~~~~~~~ 177 (347)
+ +|=+.+|+-++.+.++...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhh
Confidence 9 8999999999998887763
No 293
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.01 E-value=6.2e+02 Score=22.81 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-cCCCCCchHHHHHHHHhcCCCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHH
Q 019000 39 VSEEDGISIIKHAFNKGITFFDTA-DVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (347)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~sE~~lG~~l~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~ 117 (347)
.+.++..++++...+.||..++.. +.++ ..+...-+.+....+. +++.... ....+.++.+++
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~--~~~~~~~~~l~~~~~~-----~~v~~~~--------r~~~~di~~a~~- 82 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAAS--PQSRADCEAIAKLGLK-----AKILTHI--------RCHMDDARIAVE- 82 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHHHhCCCC-----CcEEEEe--------cCCHHHHHHHHH-
Confidence 478899999999999999999976 3333 2333333334332221 1111000 124455555443
Q ss_pred HHhHhCCCcccEEEecCC-----CCCCCHHH----HHHHHHHHHHcCccceEecC
Q 019000 118 SLKRLGVDYIDLYYQHRV-----DPSVPIED----TIGELKMLVVEGKIKYIGLS 163 (347)
Q Consensus 118 SL~rL~~d~iDl~~lH~~-----~~~~~~~~----~~~~l~~l~~~G~Ir~iGvS 163 (347)
.|++.|.++.--++ ......++ +.+..+.+++.|.--.+++.
T Consensus 83 ----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 83 ----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred ----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 37777776552111 00122333 44555677778865555553
No 294
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=20.98 E-value=7.6e+02 Score=23.82 Aligned_cols=140 Identities=13% Similarity=0.184 Sum_probs=71.9
Q ss_pred eCccCCCCCchHHHHHHHHhcC----CCCC-eEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecC
Q 019000 60 DTADVYGAHANEVLVGKVLKQL----PRKK-IQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHR 134 (347)
Q Consensus 60 DTA~~Yg~g~sE~~lG~~l~~~----~R~~-v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~ 134 (347)
++.-.|| .|..|-+++++. ++-+ ++|.|-+....- -+++..-+++.-++.+ .++++.+|.
T Consensus 64 E~d~VfG---g~~~L~~aI~~~~~~~p~p~~i~V~~tc~~~li----------GdDi~~v~~~~~~~~~--~~~vi~v~t 128 (415)
T cd01977 64 ESHVVFG---GEKKLKKNIIEAFKEFPDIKRMTVYTTCTTALI----------GDDIKAVAKEVMEELP--DVDIFVCNA 128 (415)
T ss_pred ccceeec---cHHHHHHHHHHHHHhCCCCcEEEEECCCchhhh----------cCCHHHHHHHHHHhcC--CCeEEEEeC
Confidence 4446677 567777777653 2323 677777643321 2223333333333332 268999998
Q ss_pred CCCCCC-----HHHHHHH-HHHHH--------HcCccceEecCCC--CHHHHHHHhhcCCccee-ee-------------
Q 019000 135 VDPSVP-----IEDTIGE-LKMLV--------VEGKIKYIGLSEA--SPDTIRRAHAVHPITAV-QM------------- 184 (347)
Q Consensus 135 ~~~~~~-----~~~~~~~-l~~l~--------~~G~Ir~iGvS~~--~~~~l~~~~~~~~~~~v-q~------------- 184 (347)
|+.... ...+..+ ++++. ..+.|--||-.++ +.+.+.++++...+.++ .+
T Consensus 129 pgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~~~ 208 (415)
T cd01977 129 PGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRWMH 208 (415)
T ss_pred CCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc
Confidence 876532 1112222 33333 2467888885444 34567777776544443 11
Q ss_pred --eccccc-cchhhhHHHHHH-HhCCcEEecccC
Q 019000 185 --EWSLLT-RDIEEEIIPLCR-ELGIGIVPYSPL 214 (347)
Q Consensus 185 --~~n~~~-~~~~~~l~~~~~-~~gi~v~a~spl 214 (347)
.+|+.. +.....+.++.+ +.|+..+...|+
T Consensus 209 ~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~ 242 (415)
T cd01977 209 RAKLNVVNCARSAGYIANELKKRYGIPRLDVDGF 242 (415)
T ss_pred cCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccC
Confidence 233331 111123444444 459998876553
No 295
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.96 E-value=8e+02 Score=24.09 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhHh-CCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEec--CCCCHHHHHHHhhcCCcce
Q 019000 105 KGTPEYVRSCCEASLKRL-GVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGL--SEASPDTIRRAHAVHPITA 181 (347)
Q Consensus 105 ~~~~~~i~~~le~SL~rL-~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGv--S~~~~~~l~~~~~~~~~~~ 181 (347)
..+++.+.+.++...++. ++ .-+++.......+.+.+.+.++.+++.| +....- .+.+.+.++.+.+. .+..
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~---~~i~f~Dd~f~~~~~~~~~l~~~l~~~~-i~~~~~~~~~~~~e~l~~l~~a-G~~~ 300 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEV---REFFFDDDTFTDDKPRAEEIARKLGPLG-VTWSCNARANVDYETLKVMKEN-GLRL 300 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHhhcC-ceEEEEecCCCCHHHHHHHHHc-CCCE
Confidence 347889999999888776 43 3334433322233333444445555554 332222 23456555554443 3333
Q ss_pred eeeecccccc--------c----hhhhHHHHHHHhCCcEEecc
Q 019000 182 VQMEWSLLTR--------D----IEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 182 vq~~~n~~~~--------~----~~~~l~~~~~~~gi~v~a~s 212 (347)
+.+..--.++ . .-.+.+..|+++||.+.++-
T Consensus 301 v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~ 343 (472)
T TIGR03471 301 LLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTF 343 (472)
T ss_pred EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 3333222221 1 11467888999999876643
No 296
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.91 E-value=97 Score=18.88 Aligned_cols=18 Identities=22% Similarity=0.208 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCHHHHH
Q 019000 253 ARVENLAKRNKCTPAQLS 270 (347)
Q Consensus 253 ~~l~~ia~~~g~s~~q~a 270 (347)
+.+..||+++|++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 468899999999988854
No 297
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.79 E-value=6e+02 Score=24.29 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred EEecCCCC------------CCCHHHHHHHHHH-HHHcC---ccceEecC--CCCHHHHHHH---hhcCCcceeeeeccc
Q 019000 130 YYQHRVDP------------SVPIEDTIGELKM-LVVEG---KIKYIGLS--EASPDTIRRA---HAVHPITAVQMEWSL 188 (347)
Q Consensus 130 ~~lH~~~~------------~~~~~~~~~~l~~-l~~~G---~Ir~iGvS--~~~~~~l~~~---~~~~~~~~vq~~~n~ 188 (347)
+-||.+++ ..+++++++++.+ +.+.| +|+++=+. |.+.+.++++ +....+.++-++||.
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~ 317 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNS 317 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeecc
Confidence 67887643 2356788888875 45556 34555554 3455444444 444456788889998
Q ss_pred cccch--------hhhHHHHHHHhCCcEEecccCcc
Q 019000 189 LTRDI--------EEEIIPLCRELGIGIVPYSPLGR 216 (347)
Q Consensus 189 ~~~~~--------~~~l~~~~~~~gi~v~a~spl~~ 216 (347)
+.... -..+.+..+++|+.+......+.
T Consensus 318 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 318 IVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 75421 14677778899999999877764
No 298
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.74 E-value=7.1e+02 Score=23.40 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCc
Q 019000 38 PVSEEDGISIIKHAFNKGITFFDTA 62 (347)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA 62 (347)
..+.++..++++..-+.||..|+.+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3478899999999999999999984
No 299
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=20.73 E-value=4.4e+02 Score=21.11 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHhH----hCCC----------cccEEEecCC--CCCCCHHHHHHHHHHHHH
Q 019000 107 TPEYVRSCCEASLKR----LGVD----------YIDLYYQHRV--DPSVPIEDTIGELKMLVV 153 (347)
Q Consensus 107 ~~~~i~~~le~SL~r----L~~d----------~iDl~~lH~~--~~~~~~~~~~~~l~~l~~ 153 (347)
.+..|++.+.++.+. |..+ ++|++++..+ ....+.+++-+.|..|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 566777777777766 3332 4799999987 333456666666665543
No 300
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.73 E-value=7.2e+02 Score=24.12 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=54.8
Q ss_pred hHHHHHHHHhc-C---C-CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCC--cccEEEecCCCCCCC--
Q 019000 70 NEVLVGKVLKQ-L---P-RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVD--YIDLYYQHRVDPSVP-- 140 (347)
Q Consensus 70 sE~~lG~~l~~-~---~-R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d--~iDl~~lH~~~~~~~-- 140 (347)
.|+.|-+++++ . + .+=++|.|-|-.. -|-..++...+.+... -+.++.+|.|.....
T Consensus 80 g~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e--------------~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~ 145 (427)
T PRK02842 80 ANEELDRVVEELIKRRPNISVLFLVGSCPSE--------------VIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFT 145 (427)
T ss_pred cHHHHHHHHHHHHhccCCCCEEEEECCChHH--------------hhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHH
Confidence 67777777766 2 2 3335666665322 2333344444444433 367888888876543
Q ss_pred --HHHHHHHHHHHH-----HcCccceEecCCC-CHHHHHHHhhcCCccee
Q 019000 141 --IEDTIGELKMLV-----VEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (347)
Q Consensus 141 --~~~~~~~l~~l~-----~~G~Ir~iGvS~~-~~~~l~~~~~~~~~~~v 182 (347)
.+.++++|.+.. ..+.|--+|..+. +..+++++++...+.++
T Consensus 146 ~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~ 195 (427)
T PRK02842 146 QGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVV 195 (427)
T ss_pred HHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeE
Confidence 233444443332 2466777886553 34567777776655553
No 301
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.69 E-value=3.4e+02 Score=19.65 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=34.6
Q ss_pred HHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 148 LKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 148 l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
++++++.|++. +| ..+..++++......+-+.=|.-. .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777643 33 345556666555444433333222 234678899999999997764
No 302
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.63 E-value=87 Score=29.86 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCcEEecccCccccCC
Q 019000 195 EEIIPLCRELGIGIVPYSPLGRGLLG 220 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~L~ 220 (347)
..+.+.|++|||+++-.-||++.+..
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy~ 326 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLYD 326 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 57999999999999999999987753
No 303
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.62 E-value=1.7e+02 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC-CCCCeEEEeeeecc
Q 019000 44 GISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL-PRKKIQLASKFGVV 95 (347)
Q Consensus 44 ~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~-~R~~v~i~tK~~~~ 95 (347)
..-+-....+.|++.....-. + .++..|-++|+.. .+.+++|+| .|..
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v-~--Dd~~~I~~~l~~~~~~~dlVItt-GG~G 69 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVV-G--DDEDRIAEALRRASERADLVITT-GGLG 69 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEe-C--CCHHHHHHHHHHHHhCCCEEEEC-CCCC
Confidence 334444455789987664433 2 3677778888654 578899888 4433
No 304
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.54 E-value=6.6e+02 Score=24.39 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=58.4
Q ss_pred cCCCCCchHHHHHHHHhcC----CCCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCCCcccEEEecCCCCC
Q 019000 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS 138 (347)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~~----~R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~ 138 (347)
-.|| .|..|-+++++. +.+-++|.|-+.... --+++..-+++. ++++ ++++.+|.|...
T Consensus 66 ~V~G---g~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~----------IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~ 128 (427)
T cd01971 66 IVFG---GEDRLRELIKSTLSIIDADLFVVLTGCIAEI----------IGDDVGAVVSEF-QEGG---APIVYLETGGFK 128 (427)
T ss_pred eEeC---CHHHHHHHHHHHHHhCCCCEEEEEcCCcHHH----------hhcCHHHHHHHh-hhcC---CCEEEEECCCcC
Confidence 4577 567777777653 344566776664332 122333333333 3443 788999988655
Q ss_pred CC----HHHHHHHHHH-HH------HcCccceEecCC-------CCHHHHHHHhhcCCcceeee
Q 019000 139 VP----IEDTIGELKM-LV------VEGKIKYIGLSE-------ASPDTIRRAHAVHPITAVQM 184 (347)
Q Consensus 139 ~~----~~~~~~~l~~-l~------~~G~Ir~iGvS~-------~~~~~l~~~~~~~~~~~vq~ 184 (347)
.+ .+.++++|-+ +. +.+.|.-||..+ .+.+.+.++++...+.++.+
T Consensus 129 g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 129 GNNYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred cccccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 32 2334444443 22 235688888642 24577888887766555433
No 305
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=20.52 E-value=6.6e+02 Score=24.99 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=68.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeecccccc-------------
Q 019000 125 DYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR------------- 191 (347)
Q Consensus 125 d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~------------- 191 (347)
...|+++.--|+...-...++..+..+...+.|-.-..|..+...+.+.+......++-.++|+...
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 3468888776654322345677777776777665555556667777666544333344445554321
Q ss_pred -chhhhHHHHHHHhCCcEEecccCccccCCCCCcCCCCCCCcccccCCCCCCCccchhHHH-HHHHHHHHHhcCCCHHHH
Q 019000 192 -DIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQI-YARVENLAKRNKCTPAQL 269 (347)
Q Consensus 192 -~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ia~~~g~s~~q~ 269 (347)
.....+.++++..|..++.......|++.++ .+.. +.+...++++.++|+.++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nr-------------------------l~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDR-------------------------LLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHH-------------------------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 1113455666666655555444444433221 1222 345566777888888776
Q ss_pred HHHH
Q 019000 270 SLAW 273 (347)
Q Consensus 270 al~w 273 (347)
--..
T Consensus 214 d~~~ 217 (495)
T PRK07531 214 DDVI 217 (495)
T ss_pred HHHH
Confidence 5444
No 306
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=2e+02 Score=22.75 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=33.1
Q ss_pred CHHHHHHHhhcCC-cceeeeeccccccchhhhHHHHHHHhCCcEEecccCc
Q 019000 166 SPDTIRRAHAVHP-ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 215 (347)
Q Consensus 166 ~~~~l~~~~~~~~-~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 215 (347)
+++.+++.++..+ +.++.+.-..-.+.+...+...|++.||++-.|+.=+
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~A 106 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGA 106 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchh
Confidence 4666766666543 4555554444344445789999999999998887543
No 307
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=20.35 E-value=4.1e+02 Score=20.47 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=41.2
Q ss_pred CCCeEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhCC---CcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019000 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV---DYIDLYYQHRVDPS-VPIEDTIGELKMLVVE 154 (347)
Q Consensus 83 R~~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (347)
|=-+.|+-|+|. ...+..+++.+.+.++.... ...|++++-.+... .+..++.+.|..|.+.
T Consensus 39 R~GisVsKKvgk----------AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN----------AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc----------hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 334556666653 23677888888888876642 45799999988654 4666777777766554
No 308
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.34 E-value=90 Score=29.66 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.0
Q ss_pred hhHHHHHHHhCCcEEecccCccccCC
Q 019000 195 EEIIPLCRELGIGIVPYSPLGRGLLG 220 (347)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~L~ 220 (347)
..+.+.|+++||+++-.-||++.+..
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY~ 317 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALFK 317 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 57999999999999999999987653
No 309
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=20.26 E-value=6.5e+02 Score=22.78 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHH--cCCCeEeCccCCCCCchHHHHHHHHhcCCCC-CeEEEeeeecccCCCccccCCCCHHHHHHH
Q 019000 38 PVSEEDGISIIKHAFN--KGITFFDTADVYGAHANEVLVGKVLKQLPRK-KIQLASKFGVVSMAPTSVIVKGTPEYVRSC 114 (347)
Q Consensus 38 ~~~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~g~sE~~lG~~l~~~~R~-~v~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (347)
..+.++..++++.|.+ .|+.-+=..+.| -....+.|+. ... .+-|+|=++++.+. .+.+.-...
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----v~~a~~~L~~-~~~~~vkv~tVigFP~G~-------~~t~~K~~E 88 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRF-----IPIARKTLRE-QGTPEIRIATVTNFPHGN-------DDIDIALAE 88 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHH-----HHHHHHHhcc-cCCCCCeEEEEecCCCCC-------CcHHHHHHH
Confidence 3478899999999999 476655544443 2334444542 112 58888888877653 255666667
Q ss_pred HHHHHhHhCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCCCHHHHHHHhhcCCcceeeeeccccccch-
Q 019000 115 CEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDI- 193 (347)
Q Consensus 115 le~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~~~~~~vq~~~n~~~~~~- 193 (347)
.+..++. |.|-||+++==..-...+++.+.+.+.+.++. .....+.=+-++-.++....
T Consensus 89 a~~Ai~~-GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~-------------------~~~~~~lKVIlEt~~L~~ee~ 148 (257)
T PRK05283 89 TRAAIAY-GADEVDVVFPYRALMAGNEQVGFELVKACKEA-------------------CAANVLLKVIIETGELKDEAL 148 (257)
T ss_pred HHHHHHc-CCCEEeeeccHHHHhCCcHHHHHHHHHHHHHH-------------------hCCCceEEEEEeccccCCHHH
Confidence 7777774 99999986532222223444555555554431 11001122334555555432
Q ss_pred hhhHHHHHHHhCCcEEec
Q 019000 194 EEEIIPLCRELGIGIVPY 211 (347)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~ 211 (347)
-....+.|.+.|..++--
T Consensus 149 i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 149 IRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHHHHHhCCCEEEc
Confidence 134566677777777654
No 310
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=20.22 E-value=3.8e+02 Score=26.45 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=43.8
Q ss_pred HHHHHHHHcCccceEecCCCCHHHHHHHhhc-------CC-cceeeeeccccccchhhhHHHHHHHhCCcEEecc
Q 019000 146 GELKMLVVEGKIKYIGLSEASPDTIRRAHAV-------HP-ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 212 (347)
Q Consensus 146 ~~l~~l~~~G~Ir~iGvS~~~~~~l~~~~~~-------~~-~~~vq~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (347)
+....+-+.|-...+|....+++++++.+.. .+ |-+|.+ .+.-+...+.++++.|.+++|.++..+
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 3344566699999999999999988776543 13 444433 122122224578999999999987654
No 311
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=20.22 E-value=6.2e+02 Score=22.52 Aligned_cols=81 Identities=21% Similarity=0.108 Sum_probs=47.1
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHH----cCccceEecCCC--CHHHHHHHhhcCCcceeeeeccccccc-hhhhHHHHHH
Q 019000 130 YYQHRVDPSVPIEDTIGELKMLVV----EGKIKYIGLSEA--SPDTIRRAHAVHPITAVQMEWSLLTRD-IEEEIIPLCR 202 (347)
Q Consensus 130 ~~lH~~~~~~~~~~~~~~l~~l~~----~G~Ir~iGvS~~--~~~~l~~~~~~~~~~~vq~~~n~~~~~-~~~~l~~~~~ 202 (347)
+++..|-+....++.+++|.+|++ .|-=-.|=.-.| +.+.++.+.+...-+.+|+.-=-+-.- -.-+.+-+|+
T Consensus 107 L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk 186 (248)
T PF07476_consen 107 LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCK 186 (248)
T ss_dssp EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHH
T ss_pred eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHH
Confidence 456777666666777777776655 443333444455 688899999888889999863211100 0146788999
Q ss_pred HhCCcEEe
Q 019000 203 ELGIGIVP 210 (347)
Q Consensus 203 ~~gi~v~a 210 (347)
++|++...
T Consensus 187 ~~gvgaY~ 194 (248)
T PF07476_consen 187 EHGVGAYL 194 (248)
T ss_dssp HTT-EEEE
T ss_pred hcCCceee
Confidence 99998543
No 312
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=20.18 E-value=8.4e+02 Score=24.03 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=60.2
Q ss_pred CccCCCCCchHHHHHHHHhcC----CCCC-eEEEeeeecccCCCccccCCCCHHHHHHHHHHHHhHhC---C--CcccEE
Q 019000 61 TADVYGAHANEVLVGKVLKQL----PRKK-IQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG---V--DYIDLY 130 (347)
Q Consensus 61 TA~~Yg~g~sE~~lG~~l~~~----~R~~-v~i~tK~~~~~~~~~~~~~~~~~~~i~~~le~SL~rL~---~--d~iDl~ 130 (347)
..-.|| .|..|-+++++. ++-+ ++|.|-+.... --+++..-+++.-++++ . -.+.++
T Consensus 70 ~d~VfG---g~~~L~~ai~~~~~~~~~p~~i~v~ttc~~ei----------iGDDi~~v~~~~~~~~~~~~~p~~~~~ii 136 (461)
T TIGR02931 70 DGAVFG---ALDRVEEAVDVLLTRYPDVKVVPIITTCSTEI----------IGDDVDGLISKLNEELLKEKFPDREVHLI 136 (461)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHHh----------hhcCHHHHHHHHHhhhcccccCCCCCeEE
Confidence 345677 577788888763 2234 45666654322 12234444444333432 1 136789
Q ss_pred EecCCCCCCCH----HHHHHHHHH-HHH----cCccceEecCC--CCHHHHHHHhhcCCcceee
Q 019000 131 YQHRVDPSVPI----EDTIGELKM-LVV----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQ 183 (347)
Q Consensus 131 ~lH~~~~~~~~----~~~~~~l~~-l~~----~G~Ir~iGvS~--~~~~~l~~~~~~~~~~~vq 183 (347)
.+|.|+..... +.+++++-+ +.. .++|--||-.+ -+.+.++++++...+.++.
T Consensus 137 ~v~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~ 200 (461)
T TIGR02931 137 PIHTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANV 200 (461)
T ss_pred EeeCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEE
Confidence 99988765432 233433332 222 46688888543 3556777777776666653
No 313
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.15 E-value=1.5e+02 Score=23.20 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCCCCCchHHHHHHHHhcC
Q 019000 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL 81 (347)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~~l~~~ 81 (347)
+.+.-.+++...++.|.+.-+.|..|| -++..|..|.+..
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~g--Is~~tl~~W~r~y 53 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHG--VAASQLFLWRKQY 53 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 667778899999999999999999999 5999999999874
No 314
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=20.11 E-value=2e+02 Score=24.30 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=28.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCccceEecCCC
Q 019000 127 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEA 165 (347)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~Ir~iGvS~~ 165 (347)
-+|++++.......-.+-+..|..+..+|++|++-+.-+
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~ 116 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLF 116 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeE
Confidence 466777755443345677899999999999998766433
Done!