BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019002
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTJ8|RAD50_SCHPO DNA repair protein rad50 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad50 PE=1 SV=3
Length = 1285
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 116/281 (41%), Gaps = 61/281 (21%)
Query: 64 PPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESR 123
P ++ +R + SL Y+ AL Q Q ++ + TL + E+A E R
Sbjct: 167 PANLKKRFDEIF-ESLRYAKALDQIKGLKRDQETQVKVDQATLTHYRSDKERA-EKIELR 224
Query: 124 IQEKIQEADSLRRKLKEMD------------------EMEN------NLASELDKVQTAM 159
+ E ++ +R K++E+D E E +L S+ D + T +
Sbjct: 225 VHESLKRISCIRSKVEELDQEITETARLQDELFKSTEEYEQQMITIRHLESQSDIINTTI 284
Query: 160 NTSKSGKFTESILADKAGVDTDALRSDIAEK----------LEVKKKELSSM----EERV 205
N KS + + D++ D + L S+ AEK LE K+ +L S+ E +
Sbjct: 285 NDLKS----QMTITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELL 340
Query: 206 QELEKKWAQVQNDALK-QPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEI----HLK 260
++L ++Q + + ++ M+N+ +H + + + EG+++E+ L
Sbjct: 341 EKLTGDLGKIQGEIESLEKLKVKKSTMINEIVH----RYNINEINEEGIMTEVSKYASLV 396
Query: 261 EKELETLNG--------LRRRIEGSNVEEDTARNRLRRVTS 293
K E +G +R RIEG E NR+ + S
Sbjct: 397 NKNYEISSGKLKERQVAVRARIEGIKAHEMFLNNRVSEINS 437
>sp|P32985|BPS2_ACIAM Protein bps2 OS=Acidianus ambivalens GN=bps2 PE=4 SV=1
Length = 582
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 130 EADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAE 189
E D L RK KE E++ + D++ +S K + + + LR DI E
Sbjct: 150 EIDDLNRKHKEAIELQTKIKQIEDEIARLEKEKESDKVLNKTTQTISITNENKLR-DIKE 208
Query: 190 KLEVKKKELSSMEERVQELEKKWAQVQN-DALKQPSPAQREKMLNKQLHSLIEQLEVKQT 248
K+EVKK+EL ++ R+ L++ +++N ++L P Q + +++++ ++++ ++
Sbjct: 209 KIEVKKRELEDLQNRIARLDQ---EIKNKESLASPEIRQSYERQLQEINAQLQKITAQRN 265
Query: 249 QAEGLVSEIHLKEKELETL 267
+AE EI L EK L+ +
Sbjct: 266 EAE---IEIRLLEKVLDQI 281
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 20/161 (12%)
Query: 117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKA 176
+ S+++E E LRR+++E+ + ++L S +++++A + K L D+A
Sbjct: 280 LGDVPSKVRELENEEAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEELKDEA 339
Query: 177 GVDTDALRSDIAEKLEVKKKELSSME-----ERVQELEKKWAQVQNDALKQPSPAQREKM 231
GVD + L +E K K + + E R +EL++K +V ++ RE+
Sbjct: 340 GVDPERL-------VEFKDKIVEASERLRDLRREEELKRKLEKVSDEL---SELGDREET 389
Query: 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE-LETLNGLR 271
L + L E+L+ + +G + EI +KEKE LE + LR
Sbjct: 390 LQSEYEELQERLD----EIQGELKEIRVKEKELLERIESLR 426
>sp|P13392|MYSP_DIRIM Paramyosin (Fragment) OS=Dirofilaria immitis PE=2 SV=2
Length = 848
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 113 YEKAISSCES------RIQEKIQEADSL----RRKLKEMDEMEN-NLASELDKVQTAMNT 161
YEKAI E+ ++Q+ + EA RKL E+D +EN LA E+ ++QTA+
Sbjct: 393 YEKAIEQKEALARENKKLQDDLHEAKEALADANRKLHELD-LENARLAGEIRELQTALKE 451
Query: 162 SKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQ 206
S++ + A +A + LR ++ +L+ K++E+ ++ + +Q
Sbjct: 452 SEAARRDAENRAQRALAELQQLRIEMERRLQEKEEEMEALRKNMQ 496
>sp|O29230|RAD50_ARCFU DNA double-strand break repair Rad50 ATPase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rad50 PE=3 SV=1
Length = 886
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 96 REQTQLREVTLQEENAAYEKAISSCE-SRIQEKIQEADSLRRKLKEMDEMENNLASELDK 154
RE+ +L+E QEE +K E RI E+I+ +SLR KL E NL S L +
Sbjct: 170 REKERLKEFLSQEEQIKRQKEEKKAEIERISEEIKSIESLREKL---SEEVRNLESRLKE 226
Query: 155 VQTAMNTSKSGKFTES-ILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWA 213
++ + +S + ES +L + G++ EKL +K+L + ER+++LEKK
Sbjct: 227 LEEHKSRLESLRKQESSVLQEVRGLE---------EKLRELEKQLKEVVERIEDLEKKAK 277
Query: 214 QVQNDALKQPSP-AQREKMLNKQLHSL 239
+V K+ P A+R +L K L +
Sbjct: 278 EV-----KELKPKAERYSILEKLLSEI 299
>sp|Q01202|MYSP_BRUMA Paramyosin OS=Brugia malayi PE=2 SV=2
Length = 880
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 113 YEKAISSCES------RIQEKIQEADSL----RRKLKEMDEMEN-NLASELDKVQTAMNT 161
YEKA+ E+ ++Q+ + EA RKL E+D +EN LA E+ ++QTA+
Sbjct: 420 YEKAVEQKEALARENKKLQDDLHEAKEALADANRKLHELD-LENARLAGEIRELQTALKE 478
Query: 162 SKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQ 206
S++ + A +A + LR ++ +L+ K++E+ ++ + +Q
Sbjct: 479 SEAARRDAENRAQRALAELQQLRIEMERRLQEKEEEMEALRKNMQ 523
>sp|Q02171|MYSP_ONCVO Paramyosin OS=Onchocerca volvulus PE=2 SV=1
Length = 879
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 113 YEKAISSCES------RIQEKIQEADSL----RRKLKEMDEMEN-NLASELDKVQTAMNT 161
YEKA+ E+ ++Q+ + EA RKL E+D +EN LA E+ ++QTA+
Sbjct: 420 YEKAVEQKEALARENKKLQDDLHEAKEALADANRKLHELD-LENARLAGEIRELQTALKE 478
Query: 162 SKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQ 206
S++ + A +A + LR ++ +L+ K++E+ ++ + +Q
Sbjct: 479 SEAARRDAENRAQRALAELQQLRIEMERRLQEKEEEMEALRKNMQ 523
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
Length = 668
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 92 HSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRK--LKE--MDEMENN 147
H++TR + R L+ ENA +++++ + +++ +I + L+++ LKE ++E++ N
Sbjct: 386 HNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRN 445
Query: 148 LASELDKVQT--AMNTSKSGKFTESILADKAGVDTDALR--SDIAEKLEVKKKELSSMEE 203
+ + T ++TS+ KF +L + + TD + D A KLE + +E
Sbjct: 446 TFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLE------ADIEM 499
Query: 204 RVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSE 256
+ELE+ P + E L ++L+ L + L KQ+Q E L SE
Sbjct: 500 MRKELEE--------------PTEVEIELKRRLNQLTDHLIQKQSQVEALSSE 538
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 30/224 (13%)
Query: 71 LPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQE 130
L LH+ SL+ + QL +E+ Q+ E T+QE + I++ ++ + K+ +
Sbjct: 1486 LQKLHSESLSLMENIKSQLQE---AKEKIQVDESTIQE----LDHEITASKNNYEGKLND 1538
Query: 131 ADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILAD----KAGVDTDALR 184
DS+ R L E E NNL +E ++T K + + S LAD K+ V+++ R
Sbjct: 1539 KDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVESELGR 1598
Query: 185 SDI-----AEKLEVKKKELSSMEERVQELEKKWAQVQN--DALKQPSPAQREKMLNKQLH 237
S + E+L++ + E S+ R+ +L+ + + N D+L + R L +
Sbjct: 1599 SKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRS--LEDSVA 1656
Query: 238 SLIEQLEVKQTQAEGL---VSEIHLKEKELE-----TLNGLRRR 273
SL ++ ++K E L ++ + + ELE +++ +RRR
Sbjct: 1657 SLQKECKIKSNTVESLQDVLTSVQARNAELEDEVSRSVDKIRRR 1700
>sp|P10567|MYSP_CAEEL Paramyosin OS=Caenorhabditis elegans GN=unc-15 PE=1 SV=1
Length = 882
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 98 QTQLREVT--LQEENAAYEKAISSCESRIQEKIQEADSL----------RRKLKEMDEME 145
Q +LR V LQ+ YEKA+ E+ +E + D L RKL E+D +E
Sbjct: 414 QRELRAVNAELQKMKHLYEKAVEQKEALARENKKLHDELHEAKEALADANRKLHELD-LE 472
Query: 146 N-NLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEER 204
N LA E+ ++QTA+ + + + A +A + ALR ++ +L+ K++E+ ++ +
Sbjct: 473 NARLAGEIRELQTALKEADAQRRDAENRAQRALAELQALRIEMERRLQEKEEEMEALRKN 532
Query: 205 VQ 206
+Q
Sbjct: 533 LQ 534
>sp|Q8LNW4|FLOT2_ORYSJ Flotillin-like protein 2 OS=Oryza sativa subsp. japonica GN=FLOT2
PE=3 SV=1
Length = 499
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 120 CESRIQEKIQEADSLRRKLK---EMDEMENNLASELDKVQTAMNTSKSGKFTESILADKA 176
E+++ Q+ LR + K E+ EN +E+ Q + K+G +S +A
Sbjct: 229 AETKVVSVRQQGIGLREEAKVKAEVQVYENEREAEIAAAQAGLAMKKAGWEKQSKVAQVE 288
Query: 177 GVDTDALRSDIAE-KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPA---QREKML 232
V A+R AE ++EV++K + E+++ + A VQ + Q S A R+K
Sbjct: 289 AVKAVAIRE--AELQMEVERKNALRLTEKLKAEQLSKATVQYETQVQESNAALYNRQKAA 346
Query: 233 NKQLHSLIEQLEVKQTQAEGLVSE--------IHLKEKELETLNGLRRRIEGSNVEEDTA 284
+ L+ ++ E ++ QA+ + E ++ K+KE E L + + + VE T
Sbjct: 347 DATLYEQVKSAEARKAQADAMFFEQKLAEDARLYAKQKEAEALAMVGK----AKVEYVT- 401
Query: 285 RNRLRRVTSDRGSASTDYLVDDS 307
+ L+ + D G A DYL+ D
Sbjct: 402 -SMLQALGGDYG-ALRDYLMIDG 422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,577,420
Number of Sequences: 539616
Number of extensions: 4688367
Number of successful extensions: 31845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 2343
Number of HSP's that attempted gapping in prelim test: 25841
Number of HSP's gapped (non-prelim): 6238
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)