Query 019002
Match_columns 347
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 99.8 3.6E-20 7.9E-25 183.3 18.7 133 200-340 363-511 (511)
2 KOG4677 Golgi integral membran 99.4 9.2E-12 2E-16 125.3 18.6 111 229-345 426-546 (554)
3 PF08172 CASP_C: CASP C termin 98.4 4.4E-06 9.4E-11 78.3 13.8 184 128-345 5-237 (248)
4 TIGR02168 SMC_prok_B chromosom 96.9 0.34 7.3E-06 50.7 22.7 31 238-268 898-928 (1179)
5 TIGR00606 rad50 rad50. This fa 96.8 0.39 8.5E-06 53.7 24.1 213 42-274 795-1017(1311)
6 TIGR02168 SMC_prok_B chromosom 96.5 1.2 2.5E-05 46.9 23.4 35 234-268 447-481 (1179)
7 KOG0963 Transcription factor/C 96.5 0.055 1.2E-06 57.4 13.7 58 102-167 304-361 (629)
8 TIGR02169 SMC_prok_A chromosom 96.4 0.45 9.7E-06 50.3 20.1 34 239-272 460-493 (1164)
9 COG1196 Smc Chromosome segrega 96.2 1.1 2.3E-05 49.9 22.0 73 88-160 296-368 (1163)
10 PF10168 Nup88: Nuclear pore c 96.0 0.59 1.3E-05 50.2 18.5 156 94-263 558-714 (717)
11 PF00261 Tropomyosin: Tropomyo 95.8 0.74 1.6E-05 42.3 16.2 143 123-271 65-213 (237)
12 PF07888 CALCOCO1: Calcium bin 95.8 1.1 2.4E-05 47.3 19.3 153 105-258 161-314 (546)
13 PHA02562 46 endonuclease subun 95.4 2.1 4.6E-05 42.5 18.8 19 317-335 471-489 (562)
14 PRK11637 AmiB activator; Provi 95.4 3.1 6.6E-05 41.1 24.7 53 103-155 70-122 (428)
15 TIGR00606 rad50 rad50. This fa 95.1 1.7 3.6E-05 48.9 18.7 86 189-274 843-928 (1311)
16 PF09726 Macoilin: Transmembra 95.0 4.8 0.00011 43.4 21.2 195 81-275 440-656 (697)
17 PF12240 Angiomotin_C: Angiomo 94.6 1.8 3.9E-05 40.9 14.9 79 128-212 9-87 (205)
18 PF10174 Cast: RIM-binding pro 94.6 2 4.4E-05 46.9 17.3 165 91-273 426-601 (775)
19 PHA02562 46 endonuclease subun 94.6 5.5 0.00012 39.6 19.8 15 43-57 178-192 (562)
20 PF12128 DUF3584: Protein of u 94.5 5.8 0.00013 44.5 20.8 99 175-274 765-874 (1201)
21 PRK04863 mukB cell division pr 94.4 4.2 9.1E-05 47.3 20.1 47 230-276 438-484 (1486)
22 COG1196 Smc Chromosome segrega 94.4 3.4 7.4E-05 46.1 18.7 19 42-61 179-197 (1163)
23 PF09755 DUF2046: Uncharacteri 94.2 6.7 0.00015 39.1 19.8 175 90-302 16-214 (310)
24 PRK04863 mukB cell division pr 94.1 4.1 8.9E-05 47.4 19.3 59 105-163 283-341 (1486)
25 PF07888 CALCOCO1: Calcium bin 94.0 1.8 3.9E-05 45.7 14.9 40 230-269 258-297 (546)
26 PRK10246 exonuclease subunit S 94.0 13 0.00027 41.5 24.1 105 102-216 683-804 (1047)
27 PRK03918 chromosome segregatio 93.5 12 0.00026 39.5 22.2 20 41-60 407-426 (880)
28 PRK02224 chromosome segregatio 93.4 13 0.00027 39.6 24.6 28 32-59 468-495 (880)
29 KOG0161 Myosin class II heavy 93.0 8 0.00017 46.4 19.2 158 82-274 875-1032(1930)
30 COG2433 Uncharacterized conser 92.9 1.4 3E-05 47.4 12.1 111 93-214 395-513 (652)
31 PF10174 Cast: RIM-binding pro 92.7 8.5 0.00018 42.3 17.9 63 190-269 295-357 (775)
32 PRK11637 AmiB activator; Provi 92.7 11 0.00025 37.2 21.7 46 117-162 77-122 (428)
33 PRK09039 hypothetical protein; 92.7 11 0.00024 37.1 17.8 79 189-277 123-209 (343)
34 PF04136 Sec34: Sec34-like fam 92.5 1.2 2.6E-05 39.2 9.5 87 190-292 15-101 (157)
35 PRK11281 hypothetical protein; 92.4 22 0.00048 40.6 21.0 40 235-274 286-325 (1113)
36 PRK02224 chromosome segregatio 92.2 18 0.00039 38.4 22.0 38 232-269 521-558 (880)
37 PF09726 Macoilin: Transmembra 92.2 3.5 7.6E-05 44.5 14.1 136 120-262 430-580 (697)
38 PF10473 CENP-F_leu_zip: Leuci 92.0 2.1 4.5E-05 38.0 10.3 96 185-280 6-105 (140)
39 PF00261 Tropomyosin: Tropomyo 91.6 6 0.00013 36.4 13.3 171 105-275 5-189 (237)
40 KOG4643 Uncharacterized coiled 91.4 18 0.00039 41.4 18.7 160 105-276 174-350 (1195)
41 PRK11281 hypothetical protein; 91.1 18 0.00039 41.3 18.7 34 185-218 131-164 (1113)
42 PF14992 TMCO5: TMCO5 family 90.8 14 0.00031 36.3 15.5 38 176-217 100-137 (280)
43 PF12128 DUF3584: Protein of u 90.4 36 0.00078 38.5 22.6 84 191-274 773-863 (1201)
44 PF04156 IncA: IncA protein; 90.4 11 0.00025 32.8 15.9 62 189-260 123-184 (191)
45 PF13851 GAS: Growth-arrest sp 90.3 14 0.00031 33.8 16.3 31 228-258 144-174 (201)
46 KOG0612 Rho-associated, coiled 89.9 20 0.00044 41.6 17.7 18 231-248 627-644 (1317)
47 PF05667 DUF812: Protein of un 89.3 34 0.00073 36.6 20.5 161 103-268 421-591 (594)
48 PRK09039 hypothetical protein; 88.6 10 0.00022 37.3 12.8 89 39-140 46-148 (343)
49 KOG0250 DNA repair protein RAD 88.5 25 0.00055 40.2 17.1 26 187-212 363-388 (1074)
50 PF13514 AAA_27: AAA domain 88.3 47 0.001 37.1 26.1 168 39-217 750-931 (1111)
51 KOG0996 Structural maintenance 88.1 23 0.00049 41.1 16.5 88 81-168 332-430 (1293)
52 TIGR01843 type_I_hlyD type I s 87.8 25 0.00054 33.2 20.1 53 108-160 130-182 (423)
53 KOG0996 Structural maintenance 87.4 32 0.0007 40.0 17.1 14 3-16 251-264 (1293)
54 PRK10929 putative mechanosensi 87.1 47 0.001 38.2 18.3 30 106-135 63-92 (1109)
55 PF15619 Lebercilin: Ciliary p 86.9 25 0.00055 32.4 16.8 130 118-271 57-187 (194)
56 PF01920 Prefoldin_2: Prefoldi 86.9 13 0.00028 29.0 11.0 92 125-216 1-96 (106)
57 PF08581 Tup_N: Tup N-terminal 86.8 7.5 0.00016 31.5 9.0 56 105-160 15-70 (79)
58 PF04111 APG6: Autophagy prote 86.7 19 0.00041 35.1 13.3 56 100-156 15-70 (314)
59 KOG0980 Actin-binding protein 86.6 56 0.0012 37.1 18.1 124 42-165 329-460 (980)
60 KOG0161 Myosin class II heavy 86.6 41 0.00088 40.8 18.1 82 81-162 1063-1144(1930)
61 PF04012 PspA_IM30: PspA/IM30 86.4 24 0.00052 31.6 13.5 119 80-220 71-189 (221)
62 PF06785 UPF0242: Uncharacteri 86.1 27 0.00059 35.9 14.4 117 105-251 138-261 (401)
63 PRK15422 septal ring assembly 85.6 16 0.00034 30.3 10.3 68 117-209 6-73 (79)
64 PF08614 ATG16: Autophagy prot 85.3 3.8 8.2E-05 36.7 7.3 49 231-279 127-175 (194)
65 COG3883 Uncharacterized protei 85.1 40 0.00088 33.0 18.5 133 99-246 43-195 (265)
66 PRK09343 prefoldin subunit bet 84.7 23 0.00051 30.0 12.6 94 121-214 6-103 (121)
67 TIGR03007 pepcterm_ChnLen poly 84.7 45 0.00097 33.2 17.8 58 105-162 165-230 (498)
68 PRK10884 SH3 domain-containing 84.4 12 0.00026 34.7 10.4 74 188-261 92-166 (206)
69 KOG0976 Rho/Rac1-interacting s 84.3 32 0.00069 39.1 14.9 75 184-261 332-406 (1265)
70 PF07106 TBPIP: Tat binding pr 84.2 22 0.00048 31.0 11.4 79 186-272 76-162 (169)
71 PF05701 WEMBL: Weak chloropla 84.0 57 0.0012 33.8 17.4 153 97-255 196-358 (522)
72 KOG3385 V-SNARE [Intracellular 83.9 1.5 3.3E-05 38.4 4.0 38 221-258 19-56 (118)
73 PF08614 ATG16: Autophagy prot 82.8 15 0.00032 33.0 10.0 43 97-139 91-133 (194)
74 TIGR02338 gimC_beta prefoldin, 82.8 25 0.00055 28.9 12.1 91 124-214 5-99 (110)
75 PF15070 GOLGA2L5: Putative go 82.8 74 0.0016 34.3 24.6 21 45-65 49-69 (617)
76 PRK09841 cryptic autophosphory 82.2 76 0.0016 34.0 17.7 42 121-165 255-296 (726)
77 KOG0999 Microtubule-associated 82.1 22 0.00047 38.8 12.3 141 130-270 44-216 (772)
78 KOG0804 Cytoplasmic Zn-finger 81.0 20 0.00044 37.8 11.4 52 108-159 339-391 (493)
79 KOG0250 DNA repair protein RAD 80.2 1.2E+02 0.0026 35.1 18.4 39 112-150 292-330 (1074)
80 PF15070 GOLGA2L5: Putative go 80.0 92 0.002 33.6 20.0 147 106-258 9-184 (617)
81 PRK01156 chromosome segregatio 79.9 93 0.002 33.5 19.1 36 240-275 514-549 (895)
82 PF11365 DUF3166: Protein of u 79.4 29 0.00063 29.4 9.9 41 119-159 5-45 (96)
83 KOG1029 Endocytic adaptor prot 79.3 1.2E+02 0.0026 34.7 16.9 142 89-255 435-591 (1118)
84 KOG0946 ER-Golgi vesicle-tethe 79.3 1.2E+02 0.0026 34.5 19.1 148 111-270 667-842 (970)
85 COG4026 Uncharacterized protei 78.9 16 0.00035 35.9 9.4 30 48-77 19-49 (290)
86 PF04111 APG6: Autophagy prote 78.9 29 0.00063 33.8 11.2 32 236-267 101-132 (314)
87 PRK01156 chromosome segregatio 78.5 1E+02 0.0022 33.2 18.2 17 317-333 804-821 (895)
88 PF05622 HOOK: HOOK protein; 78.0 0.7 1.5E-05 48.7 0.0 53 104-156 249-304 (713)
89 PF13801 Metal_resist: Heavy-m 77.9 2.5 5.3E-05 32.5 3.0 33 30-62 39-75 (125)
90 PF04859 DUF641: Plant protein 77.8 7.1 0.00015 34.4 6.1 46 105-150 84-129 (131)
91 PRK10361 DNA recombination pro 77.6 99 0.0022 32.6 18.1 108 135-267 98-213 (475)
92 TIGR03007 pepcterm_ChnLen poly 77.3 81 0.0018 31.4 23.8 125 119-268 251-375 (498)
93 KOG0980 Actin-binding protein 77.2 1.4E+02 0.003 34.3 16.7 26 186-211 491-516 (980)
94 PF00038 Filament: Intermediat 76.2 67 0.0015 29.9 18.6 40 85-124 108-151 (312)
95 KOG0963 Transcription factor/C 76.2 1.1E+02 0.0023 33.6 15.2 68 102-169 190-261 (629)
96 PRK10698 phage shock protein P 74.3 52 0.0011 30.6 11.1 82 80-162 72-153 (222)
97 KOG4674 Uncharacterized conser 74.3 2.2E+02 0.0047 34.9 19.6 144 113-274 796-952 (1822)
98 PRK11519 tyrosine kinase; Prov 74.0 95 0.0021 33.2 14.3 61 141-210 272-332 (719)
99 cd07665 BAR_SNX1 The Bin/Amphi 73.9 84 0.0018 29.9 19.0 204 6-250 4-222 (234)
100 PF14817 HAUS5: HAUS augmin-li 73.8 1.4E+02 0.003 32.5 15.7 179 53-274 240-436 (632)
101 PRK10869 recombination and rep 73.5 1.2E+02 0.0027 31.7 16.3 39 231-270 300-339 (553)
102 KOG0933 Structural maintenance 72.8 1.6E+02 0.0035 34.3 16.1 59 104-162 737-799 (1174)
103 KOG0612 Rho-associated, coiled 72.8 1.5E+02 0.0033 35.0 16.1 46 243-290 676-721 (1317)
104 PF03961 DUF342: Protein of un 72.7 20 0.00043 35.9 8.6 75 188-267 333-408 (451)
105 KOG1937 Uncharacterized conser 72.5 1.4E+02 0.0031 32.0 18.3 166 89-268 250-423 (521)
106 COG4942 Membrane-bound metallo 72.4 41 0.00089 34.9 10.8 92 189-290 38-129 (420)
107 PF15188 CCDC-167: Coiled-coil 72.0 23 0.0005 29.4 7.3 59 196-255 5-64 (85)
108 PRK10246 exonuclease subunit S 71.9 1.8E+02 0.0038 32.8 22.3 21 197-217 778-798 (1047)
109 PF05667 DUF812: Protein of un 71.3 1.5E+02 0.0033 31.8 19.7 92 110-216 330-421 (594)
110 PF08317 Spc7: Spc7 kinetochor 71.0 1.1E+02 0.0023 29.8 16.4 60 189-265 209-268 (325)
111 COG0419 SbcC ATPase involved i 70.4 1.7E+02 0.0037 32.1 19.3 16 199-214 657-672 (908)
112 KOG4674 Uncharacterized conser 70.3 1.9E+02 0.0041 35.4 16.6 59 98-156 934-992 (1822)
113 KOG4643 Uncharacterized coiled 70.2 2.2E+02 0.0048 33.3 16.5 154 107-265 293-453 (1195)
114 KOG0971 Microtubule-associated 70.2 1.5E+02 0.0033 34.4 15.0 77 121-209 395-475 (1243)
115 TIGR00634 recN DNA repair prot 69.9 1.4E+02 0.0031 30.9 15.9 53 105-157 165-223 (563)
116 PF08317 Spc7: Spc7 kinetochor 69.9 1.1E+02 0.0024 29.7 17.4 24 190-213 224-247 (325)
117 PF10212 TTKRSYEDQ: Predicted 69.0 1.7E+02 0.0037 31.4 16.0 59 190-261 456-514 (518)
118 TIGR02977 phageshock_pspA phag 68.7 95 0.0021 28.4 11.7 82 80-162 72-153 (219)
119 KOG0994 Extracellular matrix g 68.1 1.9E+02 0.0041 34.6 15.5 158 93-264 1590-1747(1758)
120 KOG4673 Transcription factor T 68.0 2.2E+02 0.0047 32.3 17.9 51 136-208 446-496 (961)
121 PF04156 IncA: IncA protein; 67.0 87 0.0019 27.3 16.3 30 189-218 130-159 (191)
122 PF10234 Cluap1: Clusterin-ass 67.0 78 0.0017 31.0 10.9 143 40-201 80-237 (267)
123 KOG0964 Structural maintenance 66.9 2.6E+02 0.0056 32.8 18.0 147 105-265 675-823 (1200)
124 PRK08476 F0F1 ATP synthase sub 65.7 84 0.0018 27.1 9.9 29 113-141 32-60 (141)
125 TIGR01843 type_I_hlyD type I s 64.5 1.3E+02 0.0028 28.5 19.2 52 105-156 134-185 (423)
126 PF15066 CAGE1: Cancer-associa 64.4 39 0.00084 36.0 8.8 83 185-288 361-444 (527)
127 PRK10884 SH3 domain-containing 64.2 1.3E+02 0.0027 28.2 12.1 19 134-152 123-141 (206)
128 TIGR03185 DNA_S_dndD DNA sulfu 64.0 2E+02 0.0043 30.4 19.2 26 33-58 153-178 (650)
129 PF07106 TBPIP: Tat binding pr 63.8 47 0.001 29.0 8.0 71 129-230 79-149 (169)
130 TIGR02894 DNA_bind_RsfA transc 63.5 88 0.0019 28.9 10.0 12 113-124 59-70 (161)
131 smart00787 Spc7 Spc7 kinetocho 63.4 1.6E+02 0.0034 29.1 13.1 29 133-161 162-190 (312)
132 PF09311 Rab5-bind: Rabaptin-l 63.1 4.5 9.8E-05 36.2 1.7 74 84-157 12-85 (181)
133 KOG0976 Rho/Rac1-interacting s 62.5 3E+02 0.0065 31.9 16.8 129 111-281 88-216 (1265)
134 PF03962 Mnd1: Mnd1 family; I 62.4 87 0.0019 28.6 9.8 25 182-206 103-127 (188)
135 TIGR03319 YmdA_YtgF conserved 62.4 2.1E+02 0.0045 30.1 17.3 8 260-267 150-157 (514)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.3 98 0.0021 26.3 12.6 25 106-130 8-32 (132)
137 PF13870 DUF4201: Domain of un 62.2 66 0.0014 28.2 8.8 28 187-214 143-170 (177)
138 KOG0977 Nuclear envelope prote 61.8 2.4E+02 0.0051 30.5 14.7 133 110-256 87-226 (546)
139 KOG0993 Rab5 GTPase effector R 60.6 2.4E+02 0.0052 30.2 17.3 86 187-274 375-460 (542)
140 TIGR00634 recN DNA repair prot 59.7 2.2E+02 0.0048 29.5 16.7 132 111-259 151-291 (563)
141 PRK00409 recombination and DNA 59.4 89 0.0019 34.2 10.8 52 105-156 510-561 (782)
142 KOG0933 Structural maintenance 59.3 3.5E+02 0.0076 31.7 18.5 41 103-143 246-286 (1174)
143 KOG2751 Beclin-like protein [S 59.3 1.3E+02 0.0028 31.8 11.4 116 104-256 153-268 (447)
144 PRK10929 putative mechanosensi 59.0 3.5E+02 0.0075 31.5 21.8 49 223-274 257-305 (1109)
145 COG1382 GimC Prefoldin, chaper 58.6 1.3E+02 0.0028 26.5 13.2 106 123-250 7-114 (119)
146 PF05557 MAD: Mitotic checkpoi 58.5 3.2 7E-05 43.8 0.0 79 191-269 300-385 (722)
147 PF09787 Golgin_A5: Golgin sub 58.3 2.3E+02 0.005 29.3 20.4 38 178-219 274-311 (511)
148 PRK07191 flgK flagellar hook-a 57.8 84 0.0018 31.9 9.7 69 208-276 109-187 (456)
149 TIGR03319 YmdA_YtgF conserved 57.5 1.2E+02 0.0026 31.7 11.0 24 171-194 137-160 (514)
150 PF14257 DUF4349: Domain of un 57.4 24 0.00052 32.6 5.4 24 252-275 166-189 (262)
151 PRK10636 putative ABC transpor 57.3 66 0.0014 33.8 9.2 75 191-268 558-632 (638)
152 PF13851 GAS: Growth-arrest sp 57.1 1.6E+02 0.0035 27.1 16.7 44 231-275 125-170 (201)
153 PF04799 Fzo_mitofusin: fzo-li 56.1 1.1E+02 0.0024 28.3 9.4 74 117-221 96-169 (171)
154 PF12718 Tropomyosin_1: Tropom 55.9 1.4E+02 0.0031 26.1 14.2 26 117-142 23-48 (143)
155 PF07889 DUF1664: Protein of u 55.4 1.5E+02 0.0032 26.2 9.9 67 116-217 58-124 (126)
156 PRK02119 hypothetical protein; 55.2 87 0.0019 24.9 7.5 43 197-256 3-45 (73)
157 PF10168 Nup88: Nuclear pore c 55.1 2.4E+02 0.0052 31.0 13.1 34 123-156 573-606 (717)
158 COG4942 Membrane-bound metallo 54.5 2.8E+02 0.0061 29.1 20.5 49 112-160 42-90 (420)
159 KOG1029 Endocytic adaptor prot 54.3 1.4E+02 0.003 34.2 11.2 58 209-268 428-499 (1118)
160 TIGR01010 BexC_CtrB_KpsE polys 53.7 2.1E+02 0.0046 27.5 20.4 74 198-275 216-298 (362)
161 COG0419 SbcC ATPase involved i 53.5 3.4E+02 0.0074 29.8 25.4 34 42-75 427-471 (908)
162 PF12777 MT: Microtubule-bindi 53.4 96 0.0021 30.2 9.0 44 232-275 247-290 (344)
163 PF13094 CENP-Q: CENP-Q, a CEN 52.1 1.6E+02 0.0034 25.5 12.0 28 191-218 57-84 (160)
164 PF04012 PspA_IM30: PspA/IM30 51.4 1.8E+02 0.004 26.1 10.8 76 189-275 58-139 (221)
165 cd07664 BAR_SNX2 The Bin/Amphi 50.9 2.2E+02 0.0049 26.9 19.1 204 5-250 3-222 (234)
166 PRK12704 phosphodiesterase; Pr 50.7 1.8E+02 0.004 30.5 11.1 22 172-193 144-165 (520)
167 TIGR02977 phageshock_pspA phag 50.6 1.9E+02 0.0042 26.4 10.1 44 227-270 92-135 (219)
168 TIGR01005 eps_transp_fam exopo 50.2 3.4E+02 0.0074 28.9 21.9 15 318-332 426-440 (754)
169 COG1579 Zn-ribbon protein, pos 49.5 2.5E+02 0.0055 27.2 17.4 52 108-159 28-82 (239)
170 PF05483 SCP-1: Synaptonemal c 49.2 4.4E+02 0.0095 29.8 15.9 45 224-268 367-411 (786)
171 PF12761 End3: Actin cytoskele 49.1 1.5E+02 0.0032 28.2 9.1 83 102-212 97-183 (195)
172 TIGR02680 conserved hypothetic 48.9 5E+02 0.011 30.4 18.0 41 101-141 735-775 (1353)
173 PF05701 WEMBL: Weak chloropla 48.9 3.3E+02 0.0073 28.4 14.6 53 110-162 304-356 (522)
174 KOG1003 Actin filament-coating 48.7 2.6E+02 0.0055 27.0 16.3 156 107-268 17-178 (205)
175 TIGR02680 conserved hypothetic 48.4 5.1E+02 0.011 30.3 20.1 42 230-271 924-965 (1353)
176 KOG4807 F-actin binding protei 47.3 3.8E+02 0.0082 28.8 12.5 162 30-207 343-537 (593)
177 PF15254 CCDC14: Coiled-coil d 47.0 4.9E+02 0.011 29.8 14.1 43 253-295 527-575 (861)
178 cd00632 Prefoldin_beta Prefold 46.3 68 0.0015 26.1 5.8 37 105-141 67-103 (105)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.0 1.9E+02 0.0041 24.6 11.3 29 105-133 14-42 (132)
180 PRK12704 phosphodiesterase; Pr 45.6 3.9E+02 0.0084 28.2 18.4 16 116-131 58-73 (520)
181 PRK10803 tol-pal system protei 45.5 68 0.0015 30.4 6.5 51 224-274 37-87 (263)
182 PF05837 CENP-H: Centromere pr 45.5 1.5E+02 0.0032 24.8 7.8 60 105-165 14-73 (106)
183 PRK06665 flgK flagellar hook-a 45.4 1.8E+02 0.0039 31.1 10.2 82 208-290 121-216 (627)
184 PRK04778 septation ring format 45.3 3.8E+02 0.0083 28.0 17.5 66 200-268 352-424 (569)
185 PF04102 SlyX: SlyX; InterPro 44.9 1.4E+02 0.0029 23.2 7.0 41 233-273 3-43 (69)
186 PRK08471 flgK flagellar hook-a 44.8 1.8E+02 0.0039 31.1 10.1 83 207-289 113-210 (613)
187 TIGR02492 flgK_ends flagellar 44.5 2.5E+02 0.0055 27.1 10.3 69 208-276 109-187 (322)
188 PF03980 Nnf1: Nnf1 ; InterPr 44.4 1.7E+02 0.0038 23.8 9.8 19 193-211 77-95 (109)
189 PF04977 DivIC: Septum formati 44.4 33 0.00072 25.5 3.5 46 239-290 22-67 (80)
190 TIGR01069 mutS2 MutS2 family p 44.1 1.7E+02 0.0037 32.1 10.0 52 106-157 506-557 (771)
191 PF11932 DUF3450: Protein of u 44.0 2.4E+02 0.0052 26.1 9.7 83 79-161 13-95 (251)
192 COG4467 Regulator of replicati 44.0 51 0.0011 29.0 5.0 38 231-268 12-49 (114)
193 PRK07739 flgK flagellar hook-a 43.9 2.3E+02 0.0049 29.4 10.4 70 207-276 120-199 (507)
194 KOG1962 B-cell receptor-associ 43.9 2.3E+02 0.0049 27.3 9.6 25 189-213 165-189 (216)
195 KOG4570 Uncharacterized conser 43.8 2.3E+02 0.0051 29.5 10.3 140 83-230 258-401 (418)
196 COG4026 Uncharacterized protei 43.8 2.9E+02 0.0062 27.6 10.5 14 202-215 190-203 (290)
197 KOG0964 Structural maintenance 43.7 6.1E+02 0.013 29.9 18.8 92 185-276 331-439 (1200)
198 cd00632 Prefoldin_beta Prefold 43.6 1.8E+02 0.0039 23.7 11.3 32 185-216 66-97 (105)
199 PF13514 AAA_27: AAA domain 43.2 5.4E+02 0.012 29.1 25.4 27 190-216 744-770 (1111)
200 PRK00106 hypothetical protein; 43.2 4.5E+02 0.0097 28.2 18.1 34 235-269 147-180 (535)
201 KOG4673 Transcription factor T 42.8 5.2E+02 0.011 29.5 13.2 175 39-219 544-755 (961)
202 KOG3457 Sec61 protein transloc 42.5 21 0.00046 30.2 2.4 21 323-343 63-83 (88)
203 cd09237 V_ScBro1_like Protein- 42.2 3.4E+02 0.0074 26.5 14.7 169 51-266 42-226 (356)
204 PF14915 CCDC144C: CCDC144C pr 42.1 3.9E+02 0.0084 27.1 18.1 69 94-162 17-103 (305)
205 PF01576 Myosin_tail_1: Myosin 41.7 8.6 0.00019 42.1 0.0 150 115-268 285-446 (859)
206 PRK07521 flgK flagellar hook-a 41.4 2.4E+02 0.0052 28.9 10.1 68 208-276 104-182 (483)
207 PF13870 DUF4201: Domain of un 41.1 2.5E+02 0.0054 24.7 13.3 25 188-212 151-175 (177)
208 TIGR03017 EpsF chain length de 40.6 3.6E+02 0.0078 26.4 19.0 11 51-61 82-92 (444)
209 PF10234 Cluap1: Clusterin-ass 40.5 2.1E+02 0.0046 28.1 9.1 55 106-160 174-235 (267)
210 PRK05683 flgK flagellar hook-a 40.1 1.9E+02 0.0042 31.4 9.6 70 207-276 108-187 (676)
211 PF05911 DUF869: Plant protein 40.1 5.8E+02 0.013 28.6 16.7 69 189-267 617-692 (769)
212 PF14723 SSFA2_C: Sperm-specif 40.1 3.3E+02 0.0072 25.8 11.8 113 141-266 53-170 (179)
213 PF05911 DUF869: Plant protein 40.0 3.9E+02 0.0084 30.0 11.9 18 194-211 671-688 (769)
214 KOG4809 Rab6 GTPase-interactin 39.9 5.1E+02 0.011 28.7 12.4 72 190-265 388-469 (654)
215 PF11559 ADIP: Afadin- and alp 39.5 2.4E+02 0.0052 24.0 11.4 19 253-271 131-149 (151)
216 PF06818 Fez1: Fez1; InterPro 39.2 3.5E+02 0.0076 25.8 15.8 70 148-221 36-105 (202)
217 PRK00295 hypothetical protein; 39.2 1.9E+02 0.004 22.7 7.1 40 200-256 2-41 (68)
218 PF00038 Filament: Intermediat 39.1 3.3E+02 0.0071 25.4 21.1 114 39-157 18-131 (312)
219 PF13094 CENP-Q: CENP-Q, a CEN 39.0 2.6E+02 0.0056 24.2 14.7 23 188-210 125-147 (160)
220 PF12795 MscS_porin: Mechanose 39.0 3.1E+02 0.0068 25.2 14.9 155 105-263 35-214 (240)
221 PF05529 Bap31: B-cell recepto 38.8 2.8E+02 0.0061 24.6 9.3 23 189-211 168-190 (192)
222 smart00787 Spc7 Spc7 kinetocho 38.6 3E+02 0.0065 27.2 9.9 23 190-212 219-241 (312)
223 PRK12714 flgK flagellar hook-a 38.2 4E+02 0.0087 28.5 11.4 69 207-275 108-186 (624)
224 PF05557 MAD: Mitotic checkpoi 38.1 35 0.00075 36.3 3.7 26 189-214 510-535 (722)
225 TIGR00414 serS seryl-tRNA synt 37.9 3.4E+02 0.0073 27.6 10.4 71 135-212 29-99 (418)
226 PF10146 zf-C4H2: Zinc finger- 37.9 3.7E+02 0.008 25.7 13.1 64 184-271 48-114 (230)
227 KOG0977 Nuclear envelope prote 37.5 5.7E+02 0.012 27.8 15.5 32 189-220 106-137 (546)
228 PF06120 Phage_HK97_TLTM: Tail 37.4 4.4E+02 0.0094 26.4 16.0 25 130-156 56-80 (301)
229 COG1315 Uncharacterized conser 37.4 2E+02 0.0043 31.1 9.0 101 155-271 380-484 (543)
230 KOG2264 Exostosin EXT1L [Signa 37.2 1.2E+02 0.0027 33.6 7.5 55 94-151 93-147 (907)
231 PF10211 Ax_dynein_light: Axon 37.1 2.2E+02 0.0048 26.0 8.2 40 179-218 117-156 (189)
232 PF15175 SPATA24: Spermatogene 36.9 1E+02 0.0022 28.5 5.9 46 97-142 33-83 (153)
233 PF09789 DUF2353: Uncharacteri 36.8 4.6E+02 0.01 26.5 14.2 33 89-121 18-50 (319)
234 PF10481 CENP-F_N: Cenp-F N-te 36.3 4.8E+02 0.01 26.5 12.0 35 234-268 95-129 (307)
235 PF05622 HOOK: HOOK protein; 36.2 12 0.00026 39.7 0.0 29 110-138 365-393 (713)
236 PF00769 ERM: Ezrin/radixin/mo 36.1 3E+02 0.0064 26.1 9.2 96 106-201 80-201 (246)
237 COG1256 FlgK Flagellar hook-as 35.9 2.6E+02 0.0057 29.8 9.6 78 206-283 111-198 (552)
238 KOG0995 Centromere-associated 35.9 6.3E+02 0.014 27.8 21.3 66 102-169 267-332 (581)
239 PF12072 DUF3552: Domain of un 35.9 3.4E+02 0.0074 24.7 11.0 34 94-127 57-90 (201)
240 PF05266 DUF724: Protein of un 35.7 3.6E+02 0.0078 24.9 9.7 68 190-274 118-185 (190)
241 PF14662 CCDC155: Coiled-coil 35.7 4E+02 0.0086 25.4 14.8 88 123-221 16-113 (193)
242 PF14362 DUF4407: Domain of un 35.6 3.9E+02 0.0083 25.2 17.6 33 110-142 123-155 (301)
243 PRK06945 flgK flagellar hook-a 35.5 4.6E+02 0.01 28.4 11.5 67 207-274 109-186 (651)
244 PRK08147 flgK flagellar hook-a 35.5 2.9E+02 0.0063 28.6 9.7 69 207-276 109-188 (547)
245 KOG1962 B-cell receptor-associ 35.5 2.6E+02 0.0056 26.9 8.6 63 214-276 133-200 (216)
246 PF13949 ALIX_LYPXL_bnd: ALIX 35.1 3.6E+02 0.0079 24.8 13.3 77 185-266 80-169 (296)
247 PF04102 SlyX: SlyX; InterPro 35.0 1.7E+02 0.0037 22.6 6.2 51 200-267 1-51 (69)
248 PF07028 DUF1319: Protein of u 34.7 2.5E+02 0.0054 25.1 7.9 25 190-214 61-85 (126)
249 TIGR03779 Bac_Flav_CT_M Bacter 34.5 1.2E+02 0.0026 31.5 6.7 45 221-265 137-181 (410)
250 smart00503 SynN Syntaxin N-ter 34.4 2.3E+02 0.005 22.3 9.2 71 187-271 6-76 (117)
251 TIGR01000 bacteriocin_acc bact 34.3 5E+02 0.011 26.1 18.8 42 233-274 275-317 (457)
252 PF12325 TMF_TATA_bd: TATA ele 34.2 3.1E+02 0.0068 23.8 11.2 84 190-273 24-114 (120)
253 PF05529 Bap31: B-cell recepto 33.8 1.6E+02 0.0035 26.1 6.7 27 189-215 161-187 (192)
254 PF10805 DUF2730: Protein of u 32.9 1.9E+02 0.0042 24.0 6.6 46 176-222 60-105 (106)
255 KOG4687 Uncharacterized coiled 32.8 3.9E+02 0.0086 27.4 9.8 98 108-209 9-110 (389)
256 PF01576 Myosin_tail_1: Myosin 32.6 15 0.00032 40.4 0.0 176 105-292 110-312 (859)
257 TIGR02338 gimC_beta prefoldin, 32.5 1.5E+02 0.0032 24.5 5.8 31 110-140 76-106 (110)
258 KOG0804 Cytoplasmic Zn-finger 32.1 5.5E+02 0.012 27.6 11.0 18 232-249 440-457 (493)
259 PRK13428 F0F1 ATP synthase sub 31.9 5.8E+02 0.013 26.2 12.8 64 250-314 199-263 (445)
260 KOG0979 Structural maintenance 31.7 3.5E+02 0.0076 31.6 10.1 76 181-267 635-714 (1072)
261 PF02403 Seryl_tRNA_N: Seryl-t 31.6 2.7E+02 0.0059 22.3 11.5 74 133-214 26-99 (108)
262 PF12998 ING: Inhibitor of gro 31.5 2.5E+02 0.0055 21.9 9.4 75 38-142 21-99 (105)
263 TIGR00998 8a0101 efflux pump m 31.5 4.3E+02 0.0094 24.6 14.7 6 6-11 18-23 (334)
264 PF06818 Fez1: Fez1; InterPro 31.4 4.7E+02 0.01 25.0 12.6 40 116-155 67-106 (202)
265 PF14712 Snapin_Pallidin: Snap 31.3 2.6E+02 0.0056 21.9 9.5 29 188-216 63-91 (92)
266 PRK08871 flgK flagellar hook-a 31.1 2.9E+02 0.0063 29.8 9.1 69 207-275 111-189 (626)
267 PF05554 Novirhabdo_Nv: Viral 31.1 29 0.00062 30.4 1.5 26 45-77 46-71 (122)
268 PF06156 DUF972: Protein of un 31.0 1.5E+02 0.0033 25.2 5.8 47 230-276 11-57 (107)
269 PRK02793 phi X174 lysis protei 30.9 2.7E+02 0.0058 22.0 7.1 14 201-214 6-19 (72)
270 PF15294 Leu_zip: Leucine zipp 30.9 4.5E+02 0.0099 26.2 9.7 40 104-143 135-174 (278)
271 PF06637 PV-1: PV-1 protein (P 30.8 2.9E+02 0.0063 29.2 8.7 21 186-206 360-380 (442)
272 PRK10722 hypothetical protein; 30.5 1.3E+02 0.0027 29.6 5.8 54 222-275 119-189 (247)
273 PRK06231 F0F1 ATP synthase sub 30.4 4.4E+02 0.0094 24.3 9.8 28 113-140 73-100 (205)
274 COG1730 GIM5 Predicted prefold 30.4 2.9E+02 0.0062 24.9 7.7 39 104-142 97-135 (145)
275 TIGR02209 ftsL_broad cell divi 30.4 2E+02 0.0043 22.0 5.9 40 190-229 25-64 (85)
276 PF10186 Atg14: UV radiation r 30.1 4.2E+02 0.0091 24.0 16.6 7 308-314 217-223 (302)
277 PF12130 DUF3585: Protein of u 29.7 3.9E+02 0.0084 23.5 11.3 51 190-241 58-117 (142)
278 PF06657 Cep57_MT_bd: Centroso 29.6 3E+02 0.0065 22.2 8.5 57 191-253 19-76 (79)
279 COG5185 HEC1 Protein involved 29.6 7.9E+02 0.017 27.0 12.8 69 99-169 300-368 (622)
280 TIGR03017 EpsF chain length de 29.6 5.5E+02 0.012 25.2 18.0 43 226-268 317-362 (444)
281 PF12718 Tropomyosin_1: Tropom 29.6 3.9E+02 0.0084 23.5 16.8 45 118-162 17-61 (143)
282 PRK13428 F0F1 ATP synthase sub 29.4 4.1E+02 0.0089 27.2 9.5 24 115-138 28-51 (445)
283 PF12777 MT: Microtubule-bindi 29.4 2.1E+02 0.0046 27.9 7.2 77 189-275 235-311 (344)
284 PF11559 ADIP: Afadin- and alp 29.3 3.6E+02 0.0078 23.0 12.3 55 87-141 45-99 (151)
285 PF13863 DUF4200: Domain of un 29.0 3.2E+02 0.0069 22.3 10.0 28 189-216 88-115 (126)
286 PF11488 Lge1: Transcriptional 29.0 2.1E+02 0.0046 22.7 6.0 45 186-230 27-73 (80)
287 cd00468 HIT_like HIT family: H 28.7 58 0.0013 24.1 2.6 10 69-78 75-84 (86)
288 cd01277 HINT_subgroup HINT (hi 28.4 57 0.0012 25.1 2.6 31 47-77 59-99 (103)
289 PF10805 DUF2730: Protein of u 28.2 3.5E+02 0.0076 22.5 8.0 66 192-272 31-96 (106)
290 PRK10636 putative ABC transpor 28.2 6.1E+02 0.013 26.9 10.7 28 190-217 599-626 (638)
291 PF08657 DASH_Spc34: DASH comp 27.8 3.5E+02 0.0075 26.3 8.3 24 186-209 236-259 (259)
292 COG1566 EmrA Multidrug resista 27.7 6.6E+02 0.014 25.5 10.7 56 111-166 87-143 (352)
293 COG1579 Zn-ribbon protein, pos 27.5 5.8E+02 0.013 24.8 16.5 28 190-217 90-117 (239)
294 KOG2072 Translation initiation 27.2 1E+03 0.023 27.6 19.9 92 172-267 656-748 (988)
295 KOG4593 Mitotic checkpoint pro 27.1 9.5E+02 0.021 27.1 17.2 162 104-283 233-454 (716)
296 PF12761 End3: Actin cytoskele 26.9 5.6E+02 0.012 24.4 9.4 22 249-270 161-182 (195)
297 PF05531 NPV_P10: Nucleopolyhe 26.8 90 0.002 25.6 3.6 27 38-64 10-36 (75)
298 PLN02320 seryl-tRNA synthetase 26.8 2.4E+02 0.0052 30.0 7.5 66 138-212 95-160 (502)
299 PF14282 FlxA: FlxA-like prote 26.8 2.2E+02 0.0047 23.8 5.9 21 247-267 50-70 (106)
300 COG1340 Uncharacterized archae 26.5 6.8E+02 0.015 25.2 16.8 142 104-274 30-191 (294)
301 PF02994 Transposase_22: L1 tr 26.0 1.9E+02 0.0042 28.9 6.4 22 136-157 98-119 (370)
302 COG1293 Predicted RNA-binding 25.9 5.5E+02 0.012 27.3 10.0 49 101-149 293-341 (564)
303 PRK00736 hypothetical protein; 25.8 3.2E+02 0.007 21.3 6.9 38 200-254 2-39 (68)
304 PRK05431 seryl-tRNA synthetase 25.7 2.6E+02 0.0056 28.4 7.4 24 188-211 72-95 (425)
305 PRK13169 DNA replication intia 25.2 1.8E+02 0.004 25.0 5.3 46 229-274 10-55 (110)
306 CHL00118 atpG ATP synthase CF0 25.2 4.5E+02 0.0098 22.8 9.8 41 113-156 47-87 (156)
307 KOG4360 Uncharacterized coiled 25.0 3.3E+02 0.0072 29.7 8.2 59 105-163 230-302 (596)
308 PRK11578 macrolide transporter 24.7 4.5E+02 0.0099 25.3 8.5 33 238-270 148-180 (370)
309 PRK07352 F0F1 ATP synthase sub 24.6 4.8E+02 0.01 22.9 10.1 65 95-159 58-124 (174)
310 PF10828 DUF2570: Protein of u 24.5 4.1E+02 0.009 22.1 8.7 65 101-165 25-89 (110)
311 PF15155 MRFAP1: MORF4 family- 24.5 4E+02 0.0086 23.9 7.3 64 134-208 53-117 (127)
312 TIGR02894 DNA_bind_RsfA transc 24.4 2.6E+02 0.0056 26.0 6.4 45 232-276 102-146 (161)
313 PRK04778 septation ring format 24.4 8.4E+02 0.018 25.6 18.1 102 190-291 405-515 (569)
314 PRK00846 hypothetical protein; 24.3 3.2E+02 0.007 22.4 6.3 44 229-272 8-51 (77)
315 PF14992 TMCO5: TMCO5 family 24.2 3.6E+02 0.0079 26.9 7.8 121 89-218 54-182 (280)
316 PF13166 AAA_13: AAA domain 23.9 8.5E+02 0.018 25.5 20.1 99 67-168 245-354 (712)
317 cd01276 PKCI_related Protein K 23.8 55 0.0012 25.5 1.8 43 32-77 50-100 (104)
318 COG4913 Uncharacterized protei 23.7 6E+02 0.013 29.4 10.0 86 190-276 638-740 (1104)
319 PRK12705 hypothetical protein; 23.6 8.1E+02 0.017 26.2 10.6 75 184-275 58-132 (508)
320 KOG0243 Kinesin-like protein [ 23.5 1.3E+03 0.027 27.3 14.2 107 44-168 319-429 (1041)
321 PF11502 BCL9: B-cell lymphoma 23.2 60 0.0013 24.1 1.7 13 95-107 3-15 (40)
322 PF09325 Vps5: Vps5 C terminal 23.2 5.2E+02 0.011 22.8 21.1 56 189-244 163-220 (236)
323 PRK06799 flgK flagellar hook-a 23.2 6.9E+02 0.015 25.5 9.8 66 208-274 114-190 (431)
324 PF05990 DUF900: Alpha/beta hy 23.0 56 0.0012 30.0 2.0 34 47-85 75-108 (233)
325 PRK13729 conjugal transfer pil 23.0 3.3E+02 0.0071 29.1 7.6 54 195-266 68-122 (475)
326 PF15372 DUF4600: Domain of un 23.0 5.3E+02 0.012 23.1 7.9 54 102-156 9-78 (129)
327 PRK13729 conjugal transfer pil 22.7 4.6E+02 0.0099 28.0 8.6 45 109-153 77-121 (475)
328 PF12999 PRKCSH-like: Glucosid 22.6 5.4E+02 0.012 24.0 8.1 32 97-128 121-152 (176)
329 TIGR02231 conserved hypothetic 22.6 8.4E+02 0.018 25.0 12.2 84 187-274 76-171 (525)
330 PF06667 PspB: Phage shock pro 22.6 1.6E+02 0.0036 23.9 4.3 23 189-211 42-64 (75)
331 KOG3850 Predicted membrane pro 22.6 3.4E+02 0.0073 28.8 7.5 49 186-241 264-320 (455)
332 PF07851 TMPIT: TMPIT-like pro 22.4 3.8E+02 0.0083 27.2 7.7 30 130-159 5-34 (330)
333 KOG3215 Uncharacterized conser 22.4 7.4E+02 0.016 24.2 12.5 85 108-212 89-173 (222)
334 PF07813 LTXXQ: LTXXQ motif fa 22.2 60 0.0013 24.7 1.7 16 29-44 84-99 (100)
335 COG1730 GIM5 Predicted prefold 22.2 2.6E+02 0.0057 25.1 5.9 52 113-164 92-143 (145)
336 COG2919 Septum formation initi 22.2 1.5E+02 0.0033 25.0 4.2 40 230-269 46-85 (117)
337 PRK11147 ABC transporter ATPas 22.1 4.5E+02 0.0097 27.6 8.4 27 190-216 603-629 (635)
338 PRK14474 F0F1 ATP synthase sub 22.1 6.8E+02 0.015 23.7 9.8 27 113-139 30-56 (250)
339 PRK04406 hypothetical protein; 22.0 4.2E+02 0.0091 21.2 7.6 38 200-254 8-45 (75)
340 PRK02793 phi X174 lysis protei 22.0 3.7E+02 0.008 21.2 6.1 44 231-274 5-48 (72)
341 KOG0972 Huntingtin interacting 21.9 9.1E+02 0.02 25.1 10.6 79 181-273 233-326 (384)
342 KOG3647 Predicted coiled-coil 21.8 5.4E+02 0.012 26.3 8.5 86 74-159 88-177 (338)
343 PF10779 XhlA: Haemolysin XhlA 21.8 3.8E+02 0.0083 20.7 7.7 29 186-214 3-31 (71)
344 PF03938 OmpH: Outer membrane 21.8 4.8E+02 0.01 21.9 10.0 71 192-263 39-112 (158)
345 PRK02119 hypothetical protein; 21.7 3.9E+02 0.0084 21.2 6.2 44 231-274 6-49 (73)
346 COG5185 HEC1 Protein involved 21.6 4.2E+02 0.0092 28.9 8.1 30 189-218 281-310 (622)
347 KOG0978 E3 ubiquitin ligase in 21.5 1.2E+03 0.026 26.3 19.4 63 99-161 67-129 (698)
348 PRK04325 hypothetical protein; 21.5 4.2E+02 0.0091 21.0 7.2 15 200-214 6-20 (74)
349 PF04977 DivIC: Septum formati 21.5 2.1E+02 0.0044 21.2 4.4 45 230-274 20-64 (80)
350 PF02841 GBP_C: Guanylate-bind 21.4 7.1E+02 0.015 23.7 9.0 103 95-202 195-297 (297)
351 TIGR02976 phageshock_pspB phag 21.3 1.9E+02 0.004 23.5 4.3 23 189-211 42-64 (75)
352 PRK10803 tol-pal system protei 21.1 6E+02 0.013 24.2 8.4 58 90-150 32-89 (263)
353 PF05483 SCP-1: Synaptonemal c 21.1 1.3E+03 0.027 26.4 19.1 117 137-271 535-652 (786)
354 PF09728 Taxilin: Myosin-like 21.1 8E+02 0.017 24.1 18.4 69 191-276 239-307 (309)
355 PRK09174 F0F1 ATP synthase sub 21.0 6.7E+02 0.015 23.2 9.9 37 97-133 94-130 (204)
356 PF04806 EspF: EspF protein re 20.8 29 0.00063 26.3 -0.3 15 63-77 31-46 (47)
357 PRK08475 F0F1 ATP synthase sub 20.8 5.9E+02 0.013 22.5 11.3 41 113-156 47-87 (167)
358 PF09304 Cortex-I_coil: Cortex 20.6 5.8E+02 0.013 22.3 10.0 88 43-159 13-100 (107)
359 PF04849 HAP1_N: HAP1 N-termin 20.6 8.9E+02 0.019 24.5 15.6 32 8-39 10-41 (306)
360 PRK14471 F0F1 ATP synthase sub 20.4 5.6E+02 0.012 22.1 9.8 29 113-141 33-61 (164)
361 PF07321 YscO: Type III secret 20.3 3.4E+02 0.0073 24.5 6.2 47 228-274 82-128 (152)
362 PF09763 Sec3_C: Exocyst compl 20.2 6.6E+02 0.014 26.8 9.3 52 190-255 59-110 (701)
363 COG4487 Uncharacterized protei 20.0 6.2E+02 0.013 26.9 8.8 79 194-272 62-153 (438)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.85 E-value=3.6e-20 Score=183.25 Aligned_cols=133 Identities=26% Similarity=0.255 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh----
Q 019002 200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE---- 275 (347)
Q Consensus 200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~---- 275 (347)
.+.++..++.+-|..|-..+ .+..+ .++|.||++|||.|++||+++|.|.+|+|++.++|||+..++|+-.
T Consensus 363 k~~~ke~E~q~lr~~l~~~~---~~s~~--~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~ 437 (511)
T PF09787_consen 363 KLKEKESEIQKLRNQLSARA---SSSSW--NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNR 437 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccCCc--HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCC
Confidence 45567778888888887766 22223 3699999999999999999999999999999999999999999411
Q ss_pred ------cCCcchhhhhccccccccCCCCCCcchhhhcccCCcccc----cC--chhHHHHHHHHHHHHHHHHHHHHH
Q 019002 276 ------GSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHT----GG--NETLYKLMLLRSSFVLYILALHIA 340 (347)
Q Consensus 276 ------s~n~e~d~aRnRf~r~~s~~~s~~sD~~v~~~~krpySs----g~--g~~lrRlmLlRsafVlYIl~LHI~ 340 (347)
.+...+++++-|++..... .++|..|.++||++|++ |+ |+||||||..|++||+|+++||+|
T Consensus 438 ~~~~~~~~~~~~~d~~~r~~~~~~~---~~~d~~~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 438 PSSILMKYSNSEDDAESRVPLLMKD---SPHDIGVARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred CchhhHhhccCCCchhhhhhhhccC---CCccchHHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 1222478888888775444 45565677999988853 44 999999999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.42 E-value=9.2e-12 Score=125.29 Aligned_cols=111 Identities=21% Similarity=0.117 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcC----CcchhhhhccccccccCCCCCCcchhh
Q 019002 229 EKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGS----NVEEDTARNRLRRVTSDRGSASTDYLV 304 (347)
Q Consensus 229 Ek~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~----n~e~d~aRnRf~r~~s~~~s~~sD~~v 304 (347)
-+.|+.++|-||+-|++||.++|.++++.|.+..+||||....-+..+- |.-+.+++-+. ++.-..|..-
T Consensus 426 ~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~~~~------v~~l~~d~~~ 499 (554)
T KOG4677|consen 426 VDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKCHDV------VIDLYRDLKD 499 (554)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhccccccceeeccCCCcccccc------cchHhhhhhh
Confidence 4568999999999999999999999999999999999998776544332 22222222221 1211222100
Q ss_pred ------hcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhheee
Q 019002 305 ------DDSQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKI 345 (347)
Q Consensus 305 ------~~~~krpySsg~g~~lrRlmLlRsafVlYIl~LHI~VfIkL 345 (347)
....-+-+|+..+.++||||..|++||+||++||+|||||+
T Consensus 500 ~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivl 546 (554)
T KOG4677|consen 500 RQQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVL 546 (554)
T ss_pred hHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 00011333444499999999999999999999999999986
No 3
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=98.45 E-value=4.4e-06 Score=78.26 Aligned_cols=184 Identities=23% Similarity=0.255 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch---hhhh---------hhcccch----hhhhhhHHHHH
Q 019002 128 IQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE---SILA---------DKAGVDT----DALRSDIAEKL 191 (347)
Q Consensus 128 ~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~---s~~~---------~~a~~~~----e~~~s~il~~L 191 (347)
..+...+..++.+...+-.+|..+|..++...........++ +..+ +...+.. ..-.+.||.=+
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIV 84 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIV 84 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHH
Confidence 455667788888888888889999999987755544333322 1111 0111110 00112233222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
-+ |.+-+| +|-.+||.+|+. -+.++..|..|+..++.+=.+|=+--
T Consensus 85 ts----------------------QRDRFR-----~Rn~ELE~elr~-------~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 85 TS----------------------QRDRFR-----QRNAELEEELRK-------QQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HH----------------------HHHHHH-----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111221 233445554444 34556667788888888888887777
Q ss_pred hhhhcCCc------chhhhhccccccccCCCCCCcchhhh------cccCCcc-cccCchhHHHH---------------
Q 019002 272 RRIEGSNV------EEDTARNRLRRVTSDRGSASTDYLVD------DSQKLPY-HTGGNETLYKL--------------- 323 (347)
Q Consensus 272 Rn~~s~n~------e~d~aRnRf~r~~s~~~s~~sD~~v~------~~~krpy-Ssg~g~~lrRl--------------- 323 (347)
|=++|-+. +....++..+......+..+.|.... ...-.|| ++..-|-.|||
T Consensus 131 RylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~L~~~eR~~ls~~r 210 (248)
T PF08172_consen 131 RYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKRLSPPERIFLSLTR 210 (248)
T ss_pred HHHhhCcccccCCCcccccCCCCcccCCCCCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhcCChHHHHHHHHHH
Confidence 77776432 12222222222222222222232110 1222555 22233333333
Q ss_pred -----HHHHHHHHHHHHHHHHHhheee
Q 019002 324 -----MLLRSSFVLYILALHIAVFIKI 345 (347)
Q Consensus 324 -----mLlRsafVlYIl~LHI~VfIkL 345 (347)
..-|.+|++|.++||+|||+++
T Consensus 211 ~vL~nr~~R~~f~~Y~l~LH~lvf~~l 237 (248)
T PF08172_consen 211 FVLSNRTTRMLFFFYCLGLHLLVFFVL 237 (248)
T ss_pred HHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 2469999999999999999976
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.89 E-value=0.34 Score=50.73 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 238 SLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 238 SLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.+...+...+.+...+..+++.++.+++++.
T Consensus 898 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 928 (1179)
T TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLE 928 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444443
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=0.39 Score=53.73 Aligned_cols=213 Identities=13% Similarity=0.184 Sum_probs=122.6
Q ss_pred HHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019002 42 RELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCE 121 (347)
Q Consensus 42 ~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~ 121 (347)
..+......+.+.|.+|.-.+++-.-. .+-..|--++.+.....+.....-..++++-....+.|...+
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~-----------~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLD-----------RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888899888888854431 133445555555555555554444455555555555555553
Q ss_pred HHH----------HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHH
Q 019002 122 SRI----------QEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKL 191 (347)
Q Consensus 122 ~~i----------~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~L 191 (347)
.++ .++++.-..|...|.++..--..+++++..+...+.--. ..-..+...-+.++...-.+.
T Consensus 864 ~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 936 (1311)
T TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE-------TFLEKDQQEKEELISSKETSN 936 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 332 223333333333333333333333333333332222111 111111111111222222356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
+....++..+...+..|..-|..|+.-.-.. .|.| =+.++..+..+..++..-++..+.+..+++.++.++..++...
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~-~~~q-L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~k 1014 (1311)
T TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKDIENKIQDG-KDDY-LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE 1014 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788889999999999999999866555 3333 2357777777777788888888888888888888888887777
Q ss_pred hhh
Q 019002 272 RRI 274 (347)
Q Consensus 272 Rn~ 274 (347)
|++
T Consensus 1015 r~l 1017 (1311)
T TIGR00606 1015 RWL 1017 (1311)
T ss_pred HHH
Confidence 766
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.51 E-value=1.2 Score=46.89 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 234 KQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 234 krLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.++..+.+.+...+.+...+..++..++-++..++
T Consensus 447 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 481 (1179)
T TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAE 481 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 7
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.47 E-value=0.055 Score=57.43 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=43.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Q 019002 102 REVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKF 167 (347)
Q Consensus 102 Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s 167 (347)
=+..+.+|.+.....|+..+++...|.-+...|..+|+.- .++|...++|..-+.-..
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~ief 361 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAIEF 361 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHhhc
Confidence 3567889999999999999999999999988888888775 455555555544443333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.44 E-value=0.45 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHh
Q 019002 239 LIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRR 272 (347)
Q Consensus 239 LtEqL~~KQaQaE~L~tE~nalelqLErLn~l~R 272 (347)
+.+.+...+.++..+..+++.++.++.++.....
T Consensus 460 ~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~ 493 (1164)
T TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444443333
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.17 E-value=1.1 Score=49.88 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=47.9
Q ss_pred hhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 88 QLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 88 qlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
+++...........|-..+..+...+++.+...+.+|.....+.........+++.....+....+..+..+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666677777777777777777777766655566666666666666666555554
No 10
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.99 E-value=0.59 Score=50.19 Aligned_cols=156 Identities=20% Similarity=0.283 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhh
Q 019002 94 STREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILA 173 (347)
Q Consensus 94 at~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~ 173 (347)
..|+..+.|-..|+.+-..--+=|..|++.+..=...+..|..++++..+...+|...+++.-..+...+..
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~-------- 629 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV-------- 629 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------
Confidence 345555666666666666666666777777666666667777777777777778877777776555432221
Q ss_pred hhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH-HHHHHHHHHHHHHHHHHHHHhhh
Q 019002 174 DKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE-KMLNKQLHSLIEQLEVKQTQAEG 252 (347)
Q Consensus 174 ~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE-k~LEkrLhSLtEqL~~KQaQaE~ 252 (347)
..++| .++.++|+..+.++..|...+..+-++|...+...-++-++.... ..=+.|...+.+-|.+-=.++..
T Consensus 630 ---LS~AE---r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~ 703 (717)
T PF10168_consen 630 ---LSEAE---REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDE 703 (717)
T ss_pred ---CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 12222 345688999999999999999999999986544332333332221 11244555666666665556666
Q ss_pred hhhhhhhhHHh
Q 019002 253 LVSEIHLKEKE 263 (347)
Q Consensus 253 L~tE~nalelq 263 (347)
++.+++.+...
T Consensus 704 ~v~~ik~i~~~ 714 (717)
T PF10168_consen 704 LVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHh
Confidence 66666655443
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.85 E-value=0.74 Score=42.34 Aligned_cols=143 Identities=19% Similarity=0.311 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHH-HHHHHHHHHHHHH
Q 019002 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIA-EKLEVKKKELSSM 201 (347)
Q Consensus 123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il-~~Le~kk~el~~~ 201 (347)
++.+--..++...+.++.++.-....-..++.++..+.......... +...-++.. +-.++ .+|+.-..-+...
T Consensus 65 kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~----e~k~~E~~r-kl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 65 KLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEA----ERKYEEVER-KLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 44444444555555555555555555555555554444333222111 000001110 11122 2555555556667
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCC-----hHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 202 EERVQELEKKWAQVQNDALKQPS-----PAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 202 e~~v~~lek~w~~vq~~alk~Ps-----paQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
|.++..||.+-..| .+.+|.+. -.+|+..+|.+++.|+++|..=-..+|.....++.|+.++.+|+.-.
T Consensus 140 E~ki~eLE~el~~~-~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 140 ESKIKELEEELKSV-GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH-HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666 44555433 27899999999999999999999999999988888888888885443
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.84 E-value=1.1 Score=47.28 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR 184 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~ 184 (347)
.|.+++..-.+-|...+..+.....+...|....+++......+..+.+.+.........++..-.+.. ...-......
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi-~~l~qk~~E~ 239 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI-KTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344444444444555555555555666667777777777677776666666554433332222210000 0000000111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQ-ELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH 258 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~-~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~n 258 (347)
..++++++..+.++..++..++ .|...=..+++.-...-..-+.-..|-.+|+++=++|.+.|.+++.|..|.-
T Consensus 240 e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 240 EKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344444444444442222 2222212222111111112222234556677777777777777777766643
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.42 E-value=2.1 Score=42.46 Aligned_cols=19 Identities=5% Similarity=-0.246 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 019002 317 NETLYKLMLLRSSFVLYIL 335 (347)
Q Consensus 317 g~~lrRlmLlRsafVlYIl 335 (347)
|+..+|+.|.|.+..-.++
T Consensus 471 ~Ge~~r~~la~~l~~~~~~ 489 (562)
T PHA02562 471 QGEKARIDLALLFTWRDVA 489 (562)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 6678889988887643333
No 14
>PRK11637 AmiB activator; Provisional
Probab=95.41 E-value=3.1 Score=41.11 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=26.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 019002 103 EVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKV 155 (347)
Q Consensus 103 e~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~ 155 (347)
...++.+....++.|..++.+|.+..++...+..++..++.--..+..+++..
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555544444333333333333
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.07 E-value=1.7 Score=48.92 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.+++....+...++.++..|+.+|..+.+..++--.-.++-..|+.+|..|.+.+.+=.+..+.+..++.-+...++++.
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 922 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34555577777888888888888888887777666677777889999999988887777777777777777777777776
Q ss_pred HHHhhh
Q 019002 269 GLRRRI 274 (347)
Q Consensus 269 ~l~Rn~ 274 (347)
..+..+
T Consensus 923 ~~~~~~ 928 (1311)
T TIGR00606 923 QEKEEL 928 (1311)
T ss_pred HHHHHH
Confidence 666554
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.02 E-value=4.8 Score=43.41 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=123.9
Q ss_pred hhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 81 YSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 81 s~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
.--.|=.|++.|..+..++..-=.-++.||.-.++-|.+..+.-|.-.+-...|+++|.|....-..+.++|-+..++-.
T Consensus 440 ~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 440 SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888877777767778999999999999999988888899999999999988877777777766554432
Q ss_pred hccCCCcch-hhhhhhcccchhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---------hcCCChHH
Q 019002 161 TSKSGKFTE-SILADKAGVDTDALRSD---IAEKLEVKKKELSSMEERVQELEKKWAQVQNDA---------LKQPSPAQ 227 (347)
Q Consensus 161 ~~q~~~s~~-s~~~~~a~~~~e~~~s~---il~~Le~kk~el~~~e~~v~~lek~w~~vq~~a---------lk~PspaQ 227 (347)
.....+.-. ..+...-+.-+|+.|.. +=.++...+.||+.-|+.++.||++-..+.... |-.-=.+-
T Consensus 520 ~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am 599 (697)
T PF09726_consen 520 EEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM 599 (697)
T ss_pred HHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 211111000 00011112334445433 334777788888888888888888764333221 11011133
Q ss_pred hHHH--HHHHHH-------HHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 228 REKM--LNKQLH-------SLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 228 REk~--LEkrLh-------SLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
+||. ||.-|. .|.--|-.-..|+|.+..-+..++.|++-|+.-.-.+.
T Consensus 600 qdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 600 QDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 444333 24455555667888888888888888888875444444
No 17
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=94.63 E-value=1.8 Score=40.93 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019002 128 IQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQE 207 (347)
Q Consensus 128 ~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~ 207 (347)
++-...|+.--+--|.+|..||.+||.-...+.+.|........+... .++..++ +.|.+|..-+=.+|..+-.
T Consensus 9 Q~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~--~~~~~L~----~~LrEkEErILaLEad~~k 82 (205)
T PF12240_consen 9 QQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPS--NNASNLK----ELLREKEERILALEADMTK 82 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC--CcHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 444567777777889999999999999999999988776554111111 3344443 6677766655555555554
Q ss_pred HHHHH
Q 019002 208 LEKKW 212 (347)
Q Consensus 208 lek~w 212 (347)
.|.+.
T Consensus 83 WEqkY 87 (205)
T PF12240_consen 83 WEQKY 87 (205)
T ss_pred HHHHH
Confidence 44444
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.62 E-value=2 Score=46.86 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=116.8
Q ss_pred cccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCC
Q 019002 91 SHSSTREQTQLREVTLQEENAAYEKAISSCESR----IQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGK 166 (347)
Q Consensus 91 aHSat~eQaq~Re~tlqeenaayekAis~c~~~----i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~ 166 (347)
+++++-.-++ .+|-+=+..|++.|...+.. -+++..+.+.++..+++....=..|..+|...+..+...+..+
T Consensus 426 ~d~~~~~~~~---~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~ 502 (775)
T PF10174_consen 426 ADSSNEDEAL---ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEA 502 (775)
T ss_pred ccccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Confidence 4444444433 57777888888888874433 4677888899999999999888899999999998888888777
Q ss_pred cchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHH
Q 019002 167 FTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVK 246 (347)
Q Consensus 167 s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~K 246 (347)
|.-..+..+...+-+.+ -=.|+.++.+...|+..+.. +-..|--..|-..||...-..-+-...-
T Consensus 503 s~l~s~~~K~~s~i~~l----~I~lEk~rek~~kl~~ql~k-----------~~~~~e~~~r~~~Le~ev~~~~ee~~ka 567 (775)
T PF10174_consen 503 SKLASSQEKKDSEIERL----EIELEKKREKHEKLEKQLEK-----------LRANAELRDRIQQLEQEVTRYREESEKA 567 (775)
T ss_pred HHHhhccchhhhHHHHH----HHHHHHhhhHHHHHHHHHHH-----------HHhCHhhcchHHHHHHHHHHHHHHHHHH
Confidence 66644444443333322 13788888888888877775 2233444566777888887777777777
Q ss_pred HHHhhhhh-------hhhhhhHHhhhHHHHHHhh
Q 019002 247 QTQAEGLV-------SEIHLKEKELETLNGLRRR 273 (347)
Q Consensus 247 QaQaE~L~-------tE~nalelqLErLn~l~Rn 273 (347)
|+-+|.|. +|+|.++++.-+|....+.
T Consensus 568 q~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 568 QAEVERLLDILREAENEKNDKEKKIGELEKELEK 601 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 87777665 6888998888888765443
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.56 E-value=5.5 Score=39.63 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=5.8
Q ss_pred HHhhhHHHHHHHHHH
Q 019002 43 ELDQKAASLSRLIRD 57 (347)
Q Consensus 43 eLd~kAasL~rsiqd 57 (347)
++..+-..|...|..
T Consensus 178 e~~~~i~~l~~~i~~ 192 (562)
T PHA02562 178 ELNQQIQTLDMKIDH 192 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444433
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.46 E-value=5.8 Score=44.55 Aligned_cols=99 Identities=24% Similarity=0.410 Sum_probs=65.7
Q ss_pred hcccchhhhhhhHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH
Q 019002 175 KAGVDTDALRSDIAEKLEVKKKELS---SMEERVQEL----EKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ 247 (347)
Q Consensus 175 ~a~~~~e~~~s~il~~Le~kk~el~---~~e~~v~~l----ek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQ 247 (347)
..|+|+..+. .+-.+++..+++|+ ..+..|.+- +..|..+..-....|.-..+...++.++..|-+++..++
T Consensus 765 ~~GvD~~~I~-~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 765 GKGVDPERIQ-QLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred hCCCCHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665551 23334444444444 344455543 446888888888888888888999999999999999988
Q ss_pred HHhhhhhhh----hhhhHHhhhHHHHHHhhh
Q 019002 248 TQAEGLVSE----IHLKEKELETLNGLRRRI 274 (347)
Q Consensus 248 aQaE~L~tE----~nalelqLErLn~l~Rn~ 274 (347)
+..+....+ ++.++.++.+++...+++
T Consensus 844 ~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 844 KEVKQRRKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765544 556666666776666654
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.43 E-value=4.2 Score=47.30 Aligned_cols=47 Identities=4% Similarity=0.033 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
.+|+..+...-+++.+++.++..+..+.+.++..++.++..+..+.+
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999888887754
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.38 E-value=3.4 Score=46.05 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=10.2
Q ss_pred HHHhhhHHHHHHHHHHhhhc
Q 019002 42 RELDQKAASLSRLIRDLRLR 61 (347)
Q Consensus 42 ~eLd~kAasL~rsiqdLRlR 61 (347)
..|++.-..|.| |.+++-.
T Consensus 179 ~~L~~~~~nl~~-~~~~~~e 197 (1163)
T COG1196 179 RKLERTEENLER-LEDLLEE 197 (1163)
T ss_pred HHHHHHHHHHHH-HHHHHHH
Confidence 445555555555 5555543
No 23
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.17 E-value=6.7 Score=39.09 Aligned_cols=175 Identities=27% Similarity=0.354 Sum_probs=96.5
Q ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch
Q 019002 90 SSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE 169 (347)
Q Consensus 90 naHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~ 169 (347)
-+-++|++|.+.|-.+|+.+|.-...=+..+..+. +-+..--..|+..--+++
T Consensus 16 ~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~--------------~~L~~e~~~lr~~sv~~~------------- 68 (310)
T PF09755_consen 16 SSSSATREQLRKRIESLQQENRVLKRELETEKARC--------------KHLQEENRALREASVRIQ------------- 68 (310)
T ss_pred CCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------------
Confidence 34567889999999999998765443333332222 222111122222222221
Q ss_pred hhhhhhcccchhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHH-------
Q 019002 170 SILADKAGVDTDALRSDIAEKLEVKKKELSSM--------EERVQELEKKWAQVQNDALKQPSPAQREKMLNK------- 234 (347)
Q Consensus 170 s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~--------e~~v~~lek~w~~vq~~alk~PspaQREk~LEk------- 234 (347)
.+|-.+.|..+-.++++|+..|+|-..+ |--+..|.++..+++.+-. +.|..||.
T Consensus 69 ----~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~------~lE~~Le~EqE~~V~ 138 (310)
T PF09755_consen 69 ----AKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKV------ELENQLEQEQEYLVN 138 (310)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHH
Confidence 1222234455555666666666665544 3345667777777776642 44444443
Q ss_pred HHHHHHHHH----HHHHHHhhhhhhhhhhhHHhhhHH-----HHHHhhhhcCCcchhhhhccccccccCCCCCCcch
Q 019002 235 QLHSLIEQL----EVKQTQAEGLVSEIHLKEKELETL-----NGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDY 302 (347)
Q Consensus 235 rLhSLtEqL----~~KQaQaE~L~tE~nalelqLErL-----n~l~Rn~~s~n~e~d~aRnRf~r~~s~~~s~~sD~ 302 (347)
+|..=|..| ..||..+|.|..|+--+|..||.= |.+|.+...-+.+--.-.-++....+. |.+|.|.
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~-~~s~~d~ 214 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSA-PPSPRDT 214 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CCCcchH
Confidence 333444444 478888889999988887777763 778877755444333333444444333 3344444
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.15 E-value=4.1 Score=47.36 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhcc
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSK 163 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q 163 (347)
.+-||-+.|.+-...++.++.+...-...+...++|++.....|+.+.+.+..-+....
T Consensus 283 ~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677799999999999999999999999999999999999999999999987765544
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.99 E-value=1.8 Score=45.74 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
..|-.||...+.++.++++++..+..|...+..+|-.+..
T Consensus 258 ~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe 297 (546)
T PF07888_consen 258 AELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE 297 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777776666666655555543
No 26
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.96 E-value=13 Score=41.45 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=55.6
Q ss_pred HHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Q 019002 102 REVTLQEENAAYEKAISSC--------------ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKF 167 (347)
Q Consensus 102 Re~tlqeenaayekAis~c--------------~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s 167 (347)
+..++.+....|++++..+ +...++.......+...++.....-..+..++..++..+...=.
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~--- 759 (1047)
T PRK10246 683 ELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQ--- 759 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4555666677777777766 44444444555556666666665556666666666655543211
Q ss_pred chhhhhhhcccchhh-hhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 168 TESILADKAGVDTDA-LRSDI--AEKLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 168 ~~s~~~~~a~~~~e~-~~s~i--l~~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
+.|..++. ..... -.+++..+.++...++.+..+...+...+
T Consensus 760 -------~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 804 (1047)
T PRK10246 760 -------ASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTA 804 (1047)
T ss_pred -------hCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11221111 11000 13455556666777777766666666544
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=93.45 E-value=12 Score=39.52 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=11.7
Q ss_pred HHHHhhhHHHHHHHHHHhhh
Q 019002 41 VRELDQKAASLSRLIRDLRL 60 (347)
Q Consensus 41 v~eLd~kAasL~rsiqdLRl 60 (347)
+..|..+...+...|..|+-
T Consensus 407 i~~l~~~~~~~~~~i~eL~~ 426 (880)
T PRK03918 407 ISKITARIGELKKEIKELKK 426 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666663
No 28
>PRK02224 chromosome segregation protein; Provisional
Probab=93.35 E-value=13 Score=39.55 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=14.2
Q ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHHhh
Q 019002 32 VFTEEQQKYVRELDQKAASLSRLIRDLR 59 (347)
Q Consensus 32 ~ft~~Q~~~v~eLd~kAasL~rsiqdLR 59 (347)
-|..+-...+..+...-..|...|.+++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~ 495 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVE 495 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555554
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.97 E-value=8 Score=46.36 Aligned_cols=158 Identities=20% Similarity=0.338 Sum_probs=92.3
Q ss_pred hhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhh
Q 019002 82 SAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT 161 (347)
Q Consensus 82 ~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~ 161 (347)
-..|.+||.+-..+..=|..++..+..+...-++-+.+...++.+-.++...|..+.++++..-..|+..+++.+..+.-
T Consensus 875 ~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k 954 (1930)
T KOG0161|consen 875 KNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQK 954 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655555555666666666666666666666666666666666666666666665555666666555533221
Q ss_pred ccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHH
Q 019002 162 SKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIE 241 (347)
Q Consensus 162 ~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtE 241 (347)
. +..+...-.++++.++++..+++.+..|-|+ -|.||.++..|..
T Consensus 955 ~------------------~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke-----------------kk~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 955 L------------------ELEKNAAENKLKNLEEEINSLDENISKLSKE-----------------KKELEERIRELQD 999 (1930)
T ss_pred H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Confidence 1 1111111234444444555444444444333 2458888888888
Q ss_pred HHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 242 QLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 242 qL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
.|......+.+++--++-++-+|..++....+-
T Consensus 1000 ~l~~~eek~~~l~k~~~kle~~l~~le~~le~e 1032 (1930)
T KOG0161|consen 1000 DLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE 1032 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777777765444333
No 30
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=1.4 Score=47.40 Aligned_cols=111 Identities=30% Similarity=0.388 Sum_probs=82.2
Q ss_pred cchHHHHH--HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Q 019002 93 SSTREQTQ--LREVT---LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKF 167 (347)
Q Consensus 93 Sat~eQaq--~Re~t---lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s 167 (347)
|-++++.+ -.+.| .-.+...|+|-|..|+.+++.-..|...|...+.||+..=.+|+++|+.+...++ ...++.
T Consensus 395 ~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~ 473 (652)
T COG2433 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKD 473 (652)
T ss_pred HHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 34455544 23334 3345689999999999999999999999999999999999999999999987665 111111
Q ss_pred chhhhhhhcccchhhhhhhH--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 168 TESILADKAGVDTDALRSDI--A-EKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 168 ~~s~~~~~a~~~~e~~~s~i--l-~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
-+ .+.....| | .+|++++++.+.|+.++..|+|-|.+
T Consensus 474 re----------i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l 513 (652)
T COG2433 474 RE----------IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513 (652)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11121222 3 48999999999999999999999986
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.70 E-value=8.5 Score=42.26 Aligned_cols=63 Identities=30% Similarity=0.427 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
+|..|+.|+..+..+...++..-.- .-.++.-|=++|.+|+..++-|.+|+.+++.+||+-+.
T Consensus 295 eL~rk~~E~~~~qt~l~~~~~~~~d-----------------~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 295 ELSRKKSELEALQTRLETLEEQDSD-----------------MRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666666666666666655543221 22344555555555555555555555555555555433
No 32
>PRK11637 AmiB activator; Provisional
Probab=92.68 E-value=11 Score=37.21 Aligned_cols=46 Identities=11% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 117 is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
|...+.+|..-..++..+...+++++.--..+..+++.++..++..
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444433
No 33
>PRK09039 hypothetical protein; Validated
Probab=92.67 E-value=11 Score=37.06 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----HHhh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK----EKEL 264 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nal----elqL 264 (347)
++|.+.|.+.+...-+|+.|..+-+.+..- =..|+..|.+.-++...+|.+++.|..+++.. ..+|
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q----------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQ----------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776666666666665554433 33478888888888888999999998888876 4566
Q ss_pred hHHHHHH----hhhhcC
Q 019002 265 ETLNGLR----RRIEGS 277 (347)
Q Consensus 265 ErLn~l~----Rn~~s~ 277 (347)
++..... |.+.+.
T Consensus 193 ~~~~~~~~~~l~~~~~~ 209 (343)
T PRK09039 193 NRYRSEFFGRLREILGD 209 (343)
T ss_pred HHhHHHHHHHHHHHhCC
Confidence 7665555 555544
No 34
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=92.51 E-value=1.2 Score=39.24 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
..+..-.+.+...+.+..|...|..|++.+ ..||.-.|+|..+|+.++.+..+|+..=.=-+.|+.
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT--------------~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 80 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKT--------------NSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDP 80 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence 344445556677778888999999998876 369999999999999999999999999888899999
Q ss_pred HHhhhhcCCcchhhhhccccccc
Q 019002 270 LRRRIEGSNVEEDTARNRLRRVT 292 (347)
Q Consensus 270 l~Rn~~s~n~e~d~aRnRf~r~~ 292 (347)
+.|.+-+++.. +.+..|...+
T Consensus 81 itr~Ln~p~~s--V~~~~F~~~L 101 (157)
T PF04136_consen 81 ITRRLNSPGSS--VNSDSFKPML 101 (157)
T ss_pred HHHHHcCCCCc--ccchHHHHHH
Confidence 99999876543 3366666543
No 35
>PRK11281 hypothetical protein; Provisional
Probab=92.38 E-value=22 Score=40.61 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 235 QLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 235 rLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
..+.|.+.|.+--...+.++.+--..+.+++++++..||+
T Consensus 286 ~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i 325 (1113)
T PRK11281 286 INLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNI 325 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777666678888888888888888888888877
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=92.19 E-value=18 Score=38.42 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
++..+....+++..+...++.+..|+..++.+++..+.
T Consensus 521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555666666666666666555544443
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.19 E-value=3.5 Score=44.45 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchh--hhhhhcccchhhhhhhHHHHHHHHHHH
Q 019002 120 CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTES--ILADKAGVDTDALRSDIAEKLEVKKKE 197 (347)
Q Consensus 120 c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s--~~~~~a~~~~e~~~s~il~~Le~kk~e 197 (347)
.+..++--.+.=..|+..+.-++..|..++.+|.+++.+.+.-|.+..... --.++..+.+ +=++|.+.++-
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~------LEkrL~eE~~~ 503 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ------LEKRLAEERRQ 503 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 334444444444566666666777777777777777777776666655541 1111111110 11233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcCC-C------------hHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 019002 198 LSSMEERVQELEKKWAQVQNDALKQP-S------------PAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK 262 (347)
Q Consensus 198 l~~~e~~v~~lek~w~~vq~~alk~P-s------------paQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalel 262 (347)
-.++|.++++-.|.=-. ++++-..| . =-+|.++||..+.-|--.|.+|+-+.-.+..|+..++.
T Consensus 504 R~~lEkQL~eErk~r~~-ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 504 RASLEKQLQEERKARKE-EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHhH-HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555544433222 22233333 1 14688999999999999999999998888888865554
No 38
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.00 E-value=2.1 Score=37.97 Aligned_cols=96 Identities=24% Similarity=0.325 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hcCCChHHhH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDA---LKQPSPAQRE-KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK 260 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~a---lk~PspaQRE-k~LEkrLhSLtEqL~~KQaQaE~L~tE~nal 260 (347)
-.|.++|+.-+.+-++++++|-.||.+..++|.+- .+..=-++++ -.|+-++..||..|-.=...+.++..|+-.+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999873 3333334444 2378888888888888888889999999999
Q ss_pred HHhhhHHHHHHhhhhcCCcc
Q 019002 261 EKELETLNGLRRRIEGSNVE 280 (347)
Q Consensus 261 elqLErLn~l~Rn~~s~n~e 280 (347)
..+|+...+.-..+.+.+++
T Consensus 86 ~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 86 DKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 99998888887777776653
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.62 E-value=6 Score=36.44 Aligned_cols=171 Identities=16% Similarity=0.235 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccc-----
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVD----- 179 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~----- 179 (347)
.++.+...|+.-+..|+.++.+.-..+......+..|..--..|-.+++.++..+...+.+-...+...+...--
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777766666555555555544444444444444444443333333322221111111000
Q ss_pred ----hhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hcCCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019002 180 ----TDALRSDIA-EKLEVKKKELSSMEERVQELEKKWAQVQNDA----LKQPSPAQREKMLNKQLHSLIEQLEVKQTQA 250 (347)
Q Consensus 180 ----~e~~~s~il-~~Le~kk~el~~~e~~v~~lek~w~~vq~~a----lk~PspaQREk~LEkrLhSLtEqL~~KQaQa 250 (347)
....+-.-+ ..|+..+.-....+.+..+.+.+-.+|+.+- -+--+-..+=+.||.+|+.+..+|-.-++.-
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 000010001 1222333333333333333333333332221 1111224566779999999999998877777
Q ss_pred hhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 251 EGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 251 E~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
+-...-....+.++..|+.......
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655666666666666555553
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.38 E-value=18 Score=41.42 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=107.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH----------HhhhccCCCcchhhhhh
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQT----------AMNTSKSGKFTESILAD 174 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~----------~~~~~q~~~s~~s~~~~ 174 (347)
-|..+.|-.++=|--.++...||.--...|+..|.-|+.-=.+|+.+..+.+. ++++...++...+.+.-
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yk 253 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYK 253 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccc
Confidence 45566677777777777777777755555555555555444555555554443 34444445544455666
Q ss_pred hcccchhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH
Q 019002 175 KAGVDTDALRSDIAEKLEVKKK-------ELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ 247 (347)
Q Consensus 175 ~a~~~~e~~~s~il~~Le~kk~-------el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQ 247 (347)
++.+|-+..+ +.+++.|. +-.-|++++|.|++.=.. -||.--=-.|-+++|-|-.+...-|
T Consensus 254 erlmDs~fyk----dRveelkedN~vLleekeMLeeQLq~lrarse~--------~tleseiiqlkqkl~dm~~erdtdr 321 (1195)
T KOG4643|consen 254 ERLMDSDFYK----DRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--------ATLESEIIQLKQKLDDMRSERDTDR 321 (1195)
T ss_pred hhhhhhHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--------CChHHHHHHHHHHHHHHHHhhhhHH
Confidence 7777777776 33333333 344678888877764321 2232222347889999999999999
Q ss_pred HHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 248 TQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 248 aQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
.|.|-|..|.--++++=+.|+.+|-.++.
T Consensus 322 ~kteeL~eEnstLq~q~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 322 HKTEELHEENSTLQVQKEQLDGQMELLQI 350 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence 99999999999999999999999988875
No 41
>PRK11281 hypothetical protein; Provisional
Probab=91.07 E-value=18 Score=41.26 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQND 218 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~ 218 (347)
..+..+|+...+.|+.++..+..+...++..|..
T Consensus 131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 3456677777888887777777777766666543
No 42
>PF14992 TMCO5: TMCO5 family
Probab=90.76 E-value=14 Score=36.33 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=28.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 176 AGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 176 a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
.+.+.+..+ ..|+.-|..+..+.+.+..+||+|..|+.
T Consensus 100 ~~~e~~~~~----~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 100 VQCEDPQLS----QSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCCccchh----cccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 45666668888899999999999999876
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.42 E-value=36 Score=38.54 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-------hhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQN-------DALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~-------~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
+...+.++..++..+...+..=..|-+ .=.+-|+--.+...|+.+++.+..++..-+.+.+.+.++.+....+
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 852 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKE 852 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555443222221 1122344444888999999999999999999999999999998888
Q ss_pred hhHHHHHHhhh
Q 019002 264 LETLNGLRRRI 274 (347)
Q Consensus 264 LErLn~l~Rn~ 274 (347)
++.--+..+..
T Consensus 853 le~~~~~~~~~ 863 (1201)
T PF12128_consen 853 LEEELKALEEQ 863 (1201)
T ss_pred HHHHHHHHHHH
Confidence 87765555544
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.42 E-value=11 Score=32.77 Aligned_cols=62 Identities=27% Similarity=0.340 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK 260 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nal 260 (347)
+.++..+.++.+++..+..+++++..++ +-.++...+...+.+++..=++..+.+..-++..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ----------KELQDSREEVQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777766 2223344444444444444444444444333333
No 45
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.31 E-value=14 Score=33.80 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002 228 REKMLNKQLHSLIEQLEVKQTQAEGLVSEIH 258 (347)
Q Consensus 228 REk~LEkrLhSLtEqL~~KQaQaE~L~tE~n 258 (347)
|.=.||++|..|.++|..|.+|+..+..--|
T Consensus 144 kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 144 KNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4557999999999999999999998876544
No 46
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.88 E-value=20 Score=41.57 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019002 231 MLNKQLHSLIEQLEVKQT 248 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQa 248 (347)
+++.+.+||.+-+-+++.
T Consensus 627 ~l~~~i~sL~~~~~~~~~ 644 (1317)
T KOG0612|consen 627 ELKEEISSLEETLKAGKK 644 (1317)
T ss_pred HHHhHHHHHHHHHHhhhh
Confidence 455555555555444443
No 47
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.32 E-value=34 Score=36.60 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=108.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch------hhhhhhc
Q 019002 103 EVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE------SILADKA 176 (347)
Q Consensus 103 e~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~------s~~~~~a 176 (347)
...|-+|-...+.+.++-+...+.|++++..++.+.+++..-=....+.+..+..+++......+-. -+-++|-
T Consensus 421 R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI 500 (594)
T PF05667_consen 421 RAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNI 500 (594)
T ss_pred HhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhH
Confidence 3467778888888888888889999999999999888886644444444455555554433332221 1111111
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----hhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019002 177 GVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQN----DALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEG 252 (347)
Q Consensus 177 ~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~----~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~ 252 (347)
--..+.. ..|+.+-....+|++++.+++. .-|.++.+ +|-|.++ +++==-+=-.||+.-++|+..=.-.=.
T Consensus 501 ~KQk~eI-~KIl~DTr~lQkeiN~l~gkL~---RtF~v~dElifrdAKkDe~-~rkaYK~La~lh~~c~~Li~~v~~tG~ 575 (594)
T PF05667_consen 501 RKQKEEI-EKILSDTRELQKEINSLTGKLD---RTFTVTDELIFRDAKKDEA-ARKAYKLLASLHENCSQLIETVEETGT 575 (594)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1111111 3378888888899998888755 66777665 4555553 444444556899999999999888889
Q ss_pred hhhhhhhhHHhhhHHH
Q 019002 253 LVSEIHLKEKELETLN 268 (347)
Q Consensus 253 L~tE~nalelqLErLn 268 (347)
+..||--||-+++...
T Consensus 576 ~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 576 ISREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 48
>PRK09039 hypothetical protein; Validated
Probab=88.56 E-value=10 Score=37.27 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=59.9
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHH--------
Q 019002 39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEEN-------- 110 (347)
Q Consensus 39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeen-------- 110 (347)
..+..+|.+-+.|+.-|-+ ||.+...-...++.|-..+....++.+.++.+...|+.-.
T Consensus 46 ~~i~~~~~eL~~L~~qIa~-------------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~ 112 (343)
T PRK09039 46 REISGKDSALDRLNSQIAE-------------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGA 112 (343)
T ss_pred HHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3456666777777777766 8999999999999999888888888888877777666532
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019002 111 ------AAYEKAISSCESRIQEKIQEADSLRRKLKE 140 (347)
Q Consensus 111 ------aayekAis~c~~~i~ek~~ea~~L~~~l~e 140 (347)
+.++.++.+.+..+.|....+..|...+..
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~a 148 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAA 148 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 223344455555555555555555554443
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.48 E-value=25 Score=40.22 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
+....+.+|.+...++..|.++++.-
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777777777777655
No 50
>PF13514 AAA_27: AAA domain
Probab=88.33 E-value=47 Score=37.07 Aligned_cols=168 Identities=22% Similarity=0.330 Sum_probs=80.8
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHH
Q 019002 39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAIS 118 (347)
Q Consensus 39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis 118 (347)
..++.+++....+...+..|--+++|+-- . .|. . ..-..|.-.|+... +.+.+-..++++...+++.+.
T Consensus 750 ~ri~~~~~~~~~f~~~~~~L~~~l~~~~~-~-~~~---~--~~~~~L~~~l~~a~----~~~~~~~~l~~~~~~~~~~~~ 818 (1111)
T PF13514_consen 750 RRIEQMEADLAAFEEQVAALAERLGPDLP-E-DPA---E--EALEALRARLEEAR----EAQEERERLQEQLEELEEELE 818 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccc-c-CcH---H--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776411 1 111 0 11112222222221 222233356666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----HHHH------HHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhh--
Q 019002 119 SCESRIQEKIQEADSLRRKL-----KEMD------EMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRS-- 185 (347)
Q Consensus 119 ~c~~~i~ek~~ea~~L~~~l-----~eme------~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s-- 185 (347)
.++..+.+-..+...|.... .++. .....|..++..++..+...-++.+-+.-...-++.+.+.+..
T Consensus 819 ~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l 898 (1111)
T PF13514_consen 819 QAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAEL 898 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHH
Confidence 77666666655555544311 1111 2234566677777777655444443332222222334443321
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 186 -DIAEKLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 186 -~il~~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
.+-.+++....++..+.+.+..++.+...+..
T Consensus 899 ~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 899 EELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12234444444555555555555555555544
No 51
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.08 E-value=23 Score=41.14 Aligned_cols=88 Identities=13% Similarity=0.223 Sum_probs=53.0
Q ss_pred hhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHhHHHHHHHHH--
Q 019002 81 YSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEAD----SLRRKLKEMDEMENNLASELDK-- 154 (347)
Q Consensus 81 s~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~----~L~~~l~eme~~E~~l~~ele~-- 154 (347)
+.+=+|...+-|..+.+=.+---.+..-|+--|-.-.-.-+..|.++..++. .+..++++.+......++.+.+
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888777666666664444444445556666666666655 5666666666655555554443
Q ss_pred -----HHHHhhhccCCCcc
Q 019002 155 -----VQTAMNTSKSGKFT 168 (347)
Q Consensus 155 -----~~~~~~~~q~~~s~ 168 (347)
++++++......+.
T Consensus 412 ~k~kKleke~ek~~~~~~e 430 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSE 430 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 44444444444443
No 52
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.76 E-value=25 Score=33.21 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 108 EENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 108 eenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
++...|+.....+.+++.....+...+...++.++..-..+++++..++..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444555555554443
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.36 E-value=32 Score=39.97 Aligned_cols=14 Identities=21% Similarity=0.729 Sum_probs=9.6
Q ss_pred hhhhhHhhhhhcCC
Q 019002 3 GLLAWAADVVKAHK 16 (347)
Q Consensus 3 GlLAWAaDVVgg~g 16 (347)
|+|=+-=|+||-++
T Consensus 251 GmLEYLEDIIGT~r 264 (1293)
T KOG0996|consen 251 GMLEYLEDIIGTNR 264 (1293)
T ss_pred hHHHHHHHHhcccc
Confidence 66667777777665
No 54
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.13 E-value=47 Score=38.17 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 106 LQEENAAYEKAISSCESRIQEKIQEADSLR 135 (347)
Q Consensus 106 lqeenaayekAis~c~~~i~ek~~ea~~L~ 135 (347)
.++++.+|.|.|.+.-.++++-.++...+.
T Consensus 63 ~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~ 92 (1109)
T PRK10929 63 SLERAKQYQQVIDNFPKLSAELRQQLNNER 92 (1109)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 456788888888888888877777666443
No 55
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.90 E-value=25 Score=32.37 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchh-hhhhhcccchhhhhhhHHHHHHHHHH
Q 019002 118 SSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTES-ILADKAGVDTDALRSDIAEKLEVKKK 196 (347)
Q Consensus 118 s~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s-~~~~~a~~~~e~~~s~il~~Le~kk~ 196 (347)
++.-+-|+--..|+.-|+..|......+..+...+-....++...++...--. -..++.+++-+.+ -.+|...+.
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL----~~kL~~~~~ 132 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL----QRKLSQLEQ 132 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH----HHHHHHHHH
Confidence 44445566666677777777777666666666666666655554433333221 2223444444433 356666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 197 ELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 197 el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
+|..-+.+++.||+.-.. -..+..-+|....--.-.+..++..+..++++|++.-
T Consensus 133 ~l~~~~~ki~~Lek~leL--------------------~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLEL--------------------ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777664333 2333344444444444555566666666666666543
No 56
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=86.89 E-value=13 Score=29.04 Aligned_cols=92 Identities=18% Similarity=0.284 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccch--hhhhhhHHHHHHHHHHHHHH
Q 019002 125 QEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDT--DALRSDIAEKLEVKKKELSS 200 (347)
Q Consensus 125 ~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~--e~~~s~il~~Le~kk~el~~ 200 (347)
|+.+.+...|...+..+..--..|..++.+...+++.-....+.. -...|+..... +.....|-++.+..+.+++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666655555554444333332221 12223333222 22233344455556666666
Q ss_pred HHHHHHHHHHHHHHHh
Q 019002 201 MEERVQELEKKWAQVQ 216 (347)
Q Consensus 201 ~e~~v~~lek~w~~vq 216 (347)
++.....++++-..++
T Consensus 81 l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666554433
No 57
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=86.78 E-value=7.5 Score=31.54 Aligned_cols=56 Identities=20% Similarity=0.431 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
++.-|...|...=.+++.+|...++|.+.++.++.+||..-.++|..+|.-...|.
T Consensus 15 ~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr 70 (79)
T PF08581_consen 15 NLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778899999999999999999999999999999999987665554
No 58
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.71 E-value=19 Score=35.08 Aligned_cols=56 Identities=16% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 100 QLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 100 q~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
+.+-.....|...|...+...+ .-...-.+...+...++.++.-|..|..+|+.++
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l~-~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE 70 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKLE-EESDSEEDIEELEEELEKLEQEEEELLQELEELE 70 (314)
T ss_dssp ----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777776665544 1112234455666677777777777777777666
No 59
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.64 E-value=56 Score=37.14 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=76.8
Q ss_pred HHHhhhHHHHHHHHHHhhhcCCCccccc--ccchhhhhhhhhhhhhhhhhccccc-hHHHHHHHHHH--hHHHHHHHHHH
Q 019002 42 RELDQKAASLSRLIRDLRLRLPPPDISQ--RLPHLHAHSLAYSAALSQQLSSHSS-TREQTQLREVT--LQEENAAYEKA 116 (347)
Q Consensus 42 ~eLd~kAasL~rsiqdLRlRlPPp~isQ--rLPhLhAhSLAs~aaLalqlnaHSa-t~eQaq~Re~t--lqeenaayekA 116 (347)
...|.-+-.+.|.+++|+--+|---..+ +.|++-.+=.+-..+++-|-..--- --+|-|+|..- |...-.--+||
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka 408 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKA 408 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777788899999988887443333 3566666666666666654322111 11222333221 11222334555
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 019002 117 I---SSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG 165 (347)
Q Consensus 117 i---s~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~ 165 (347)
+ ...++++.-..+-...+..+.-++...-..|..++++.++.+...+-.
T Consensus 409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s 460 (980)
T KOG0980|consen 409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQS 460 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 666677666666667778888888888888888888888877655443
No 60
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.61 E-value=41 Score=40.79 Aligned_cols=82 Identities=24% Similarity=0.295 Sum_probs=71.0
Q ss_pred hhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 81 YSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 81 s~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
.-.-|.-||---..+..|.+.|---++.+.+-..|-|..++.+|.|-..+....+....+++..-.+|..+++.....++
T Consensus 1063 ~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1063 QKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777788888888888888889999999999999999999999999999999999999999999999998887
Q ss_pred hc
Q 019002 161 TS 162 (347)
Q Consensus 161 ~~ 162 (347)
-.
T Consensus 1143 e~ 1144 (1930)
T KOG0161|consen 1143 EQ 1144 (1930)
T ss_pred HH
Confidence 65
No 61
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.38 E-value=24 Score=31.61 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=71.3
Q ss_pred hhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 80 AYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 80 As~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
-..|-+||+-+-= ..-..|..|...+.+.-+.|++.+......+..=......|..++.+|..-...|++....++...
T Consensus 71 ~~~A~~Al~~g~e-dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 71 EKQAELALAAGRE-DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556554411 111356666677777777777777777777666666667777777777777777766666555433
Q ss_pred hhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019002 160 NTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDAL 220 (347)
Q Consensus 160 ~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~al 220 (347)
.......+.. . .+ --..+..||+++..+|-+|....+-.-
T Consensus 150 ~~~~~~~~~~-------~--~~------------a~~~~er~e~ki~~~ea~a~a~~el~~ 189 (221)
T PF04012_consen 150 KVNEALASFS-------V--SS------------AMDSFERMEEKIEEMEARAEASAELAD 189 (221)
T ss_pred HHHHHhccCC-------c--cc------------hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3222111110 0 11 123467889999999999988766554
No 62
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.11 E-value=27 Score=35.87 Aligned_cols=117 Identities=23% Similarity=0.351 Sum_probs=82.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR 184 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~ 184 (347)
.+.|||.-.+--+-+..+.+.||-.|+..|.+.|.|+-...+.|-+|+...-.++ -
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq---------------------~--- 193 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQ---------------------H--- 193 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------h---
Confidence 3578999999999999999999999999999999999998888887764322110 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQ-------VQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAE 251 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~-------vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE 251 (347)
+-|+++..-++.+|.|||+|--+-.. .+++.-.+|+|.-++ +=+||-|=.++.+-|=--+|
T Consensus 194 ----~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~--v~~ql~selkkivf~~enie 261 (401)
T PF06785_consen 194 ----SMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQD--VPKQLVSELKKIVFKVENIE 261 (401)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhh--hHHHHHHHHHHHHHHHhhHH
Confidence 23455666777888888886544432 234667789987777 44777666665555543333
No 63
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.60 E-value=16 Score=30.32 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHH
Q 019002 117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKK 196 (347)
Q Consensus 117 is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~ 196 (347)
+.-.|.|||.-.-.+.+|+..+.|+.+.-..|..+.+.+. +-++.+-.+-+..|.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~-------------------------~~r~~L~~en~qLk~ 60 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ-------------------------HQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hhHHHHHHHHHHHHH
Confidence 4567899999999999999999999888888887776654 112334467788889
Q ss_pred HHHHHHHHHHHHH
Q 019002 197 ELSSMEERVQELE 209 (347)
Q Consensus 197 el~~~e~~v~~le 209 (347)
|...|++++..|=
T Consensus 61 E~~~WqerLr~LL 73 (79)
T PRK15422 61 QQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.32 E-value=3.8 Score=36.66 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCCc
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNV 279 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n~ 279 (347)
.|+.++..|-+.|..|+...|.|..|.-++.+++.-++...+.++..|.
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999999999999999999999999998876654
No 65
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.09 E-value=40 Score=33.03 Aligned_cols=133 Identities=21% Similarity=0.261 Sum_probs=82.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhh
Q 019002 99 TQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLK----EMDEMENNLASELDKVQTAMNTSKSGKFTESILAD 174 (347)
Q Consensus 99 aq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~----eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~ 174 (347)
.+.-..-+|.|......=|....+++.+..-+.+.+..+++ +++.+++++++.-+-+...+++-|...++.+ --
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~--Yi 120 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATS--YI 120 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH--HH
Confidence 34444557777778888888888888888888888888876 5678888888888888888887765443331 11
Q ss_pred hcccchhhh----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHH
Q 019002 175 KAGVDTDAL----------------RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHS 238 (347)
Q Consensus 175 ~a~~~~e~~----------------~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhS 238 (347)
+..++.++. -..|++.++..|++|+-++..+. ++-..+.-. + ++||.++.+
T Consensus 121 dvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~---~~~e~l~al--------~--~e~e~~~~~ 187 (265)
T COG3883 121 DVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALE---DKLETLVAL--------Q--NELETQLNS 187 (265)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------H--HHHHHHHHH
Confidence 122222222 12367777777777766555544 443333321 2 336666666
Q ss_pred HHHHHHHH
Q 019002 239 LIEQLEVK 246 (347)
Q Consensus 239 LtEqL~~K 246 (347)
|..|...|
T Consensus 188 L~~qk~e~ 195 (265)
T COG3883 188 LNSQKAEK 195 (265)
T ss_pred HHHHHHHH
Confidence 55554433
No 66
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.74 E-value=23 Score=30.02 Aligned_cols=94 Identities=13% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccch--hhhhhhHHHHHHHHHH
Q 019002 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDT--DALRSDIAEKLEVKKK 196 (347)
Q Consensus 121 ~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~--e~~~s~il~~Le~kk~ 196 (347)
..++|..+.+...++.+++-+..--..|..++-..+..++.-..-.+.. =...|....-. +..++++-++++-.+.
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~ 85 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLEL 85 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666665555444443333322222 23344433322 2233444445555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019002 197 ELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 197 el~~~e~~v~~lek~w~~ 214 (347)
+++.+|.+...|+++-..
T Consensus 86 ~ik~lekq~~~l~~~l~e 103 (121)
T PRK09343 86 RSRTLEKQEKKLREKLKE 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 67
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.71 E-value=45 Score=33.21 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQ--------EADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~--------ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
-|..+...+++-+...+.++++=.+ +...+...+.+++.--.+.+.++..++..++.-
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443221 112344555555555555555555555544443
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.41 E-value=12 Score=34.75 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-cCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKWAQVQNDAL-KQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKE 261 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w~~vq~~al-k~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nale 261 (347)
.+.|...++|+..++.++.++...|.....+-- +--...+-..+|+.++..|.++|..-|+.++.+..+...+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888999999888885332110 00012333445777777777777776666665555544443
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.29 E-value=32 Score=39.10 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 019002 184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKE 261 (347)
Q Consensus 184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nale 261 (347)
+-+|--.|.+-|.....+.++.++|||+-.+...+.-+ --|.-+.-|.-|.||++--+..|-|.+-+.+-+-.++
T Consensus 332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~---i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRS---IQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45566688888999999999999999999987766532 2344455677788999888888888887776554433
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.23 E-value=22 Score=30.95 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh--------hh
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVS--------EI 257 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~t--------E~ 257 (347)
++-.++...+.++..++..+..|+.+|.. -.+.||-.+ |...+..|.+.+.+-++.++.|.. |+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~----L~~~~t~~e----l~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~ 147 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS----LSSEPTNEE----LREEIEELEEEIEELEEKLEKLRSGSKPVSPEEK 147 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 34456778888888888888888888887 567888876 445555555555555555555543 45
Q ss_pred hhhHHhhhHHHHHHh
Q 019002 258 HLKEKELETLNGLRR 272 (347)
Q Consensus 258 nalelqLErLn~l~R 272 (347)
..++.+..++...||
T Consensus 148 ~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 148 EKLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.03 E-value=57 Score=33.85 Aligned_cols=153 Identities=21% Similarity=0.340 Sum_probs=78.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH---HHHHHHHHHhhhccCCCcchhh-h
Q 019002 97 EQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLA---SELDKVQTAMNTSKSGKFTESI-L 172 (347)
Q Consensus 97 eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~---~ele~~~~~~~~~q~~~s~~s~-~ 172 (347)
.+|+.....+.. +++.-+..|+..+.+.-.+...|...+.....++.+|. .++..++.++.....+...... .
T Consensus 196 ~eAeee~~~~~~---~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~ 272 (522)
T PF05701_consen 196 IEAEEERIEIAA---EREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEA 272 (522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 445544443332 23344455666666666666666666665666666554 5666666666665542222110 0
Q ss_pred hhhcccchhhh---hh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHH
Q 019002 173 ADKAGVDTDAL---RS---DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVK 246 (347)
Q Consensus 173 ~~~a~~~~e~~---~s---~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~K 246 (347)
...-......+ +. ..-..|+..+.|++.|...|..|..+-..+..+-- .--+|++.-.-...+|...|..=
T Consensus 273 ~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~---~lke~e~~a~~~v~~L~~eL~~~ 349 (522)
T PF05701_consen 273 KEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELE---RLKEREKEASSEVSSLEAELNKT 349 (522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhhHHHHHHHH
Confidence 00000000011 11 11246677777777888888888777765543321 12245665555555666555555
Q ss_pred HHHhhhhhh
Q 019002 247 QTQAEGLVS 255 (347)
Q Consensus 247 QaQaE~L~t 255 (347)
+..++++..
T Consensus 350 r~eLea~~~ 358 (522)
T PF05701_consen 350 RSELEAAKA 358 (522)
T ss_pred HHHHHHHHh
Confidence 555555433
No 72
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.89 E-value=1.5 Score=38.41 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=33.5
Q ss_pred cCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002 221 KQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH 258 (347)
Q Consensus 221 k~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~n 258 (347)
.-|+|.+-...||.+..-.+|.|.+|=+-+.+|+-+|.
T Consensus 19 ~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg 56 (118)
T KOG3385|consen 19 SRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIG 56 (118)
T ss_pred cccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888899999999999999999999999988775
No 73
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.83 E-value=15 Score=32.96 Aligned_cols=43 Identities=30% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 97 EQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLK 139 (347)
Q Consensus 97 eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~ 139 (347)
.+.+.|-+++..++...++-+..+...|.+-..+...|..+++
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIK 133 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455544444444444444444444444444433
No 74
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.79 E-value=25 Score=28.94 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccchh--hhhhhHHHHHHHHHHHHH
Q 019002 124 IQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDTD--ALRSDIAEKLEVKKKELS 199 (347)
Q Consensus 124 i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~e--~~~s~il~~Le~kk~el~ 199 (347)
+++.+.+...++..++.+..--..|..++......++.-..-.+.. =...|......+ ...+++-+.++.....++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555444444444444444443333332222 223333333322 222333344444444455
Q ss_pred HHHHHHHHHHHHHHH
Q 019002 200 SMEERVQELEKKWAQ 214 (347)
Q Consensus 200 ~~e~~v~~lek~w~~ 214 (347)
.++++...|+++-..
T Consensus 85 ~lek~~~~l~~~l~e 99 (110)
T TIGR02338 85 TLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.79 E-value=74 Score=34.27 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCc
Q 019002 45 DQKAASLSRLIRDLRLRLPPP 65 (347)
Q Consensus 45 d~kAasL~rsiqdLRlRlPPp 65 (347)
=.+...|-|+|+.|+-.+.-|
T Consensus 49 ~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 49 ISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 356778888899988665433
No 76
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.20 E-value=76 Score=33.97 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 019002 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG 165 (347)
Q Consensus 121 ~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~ 165 (347)
++.+..|..++. ..++-+++--..++.+|+.++.++..-+..
T Consensus 255 ~~~l~~k~~~a~---~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 255 QQNIARQAAQDS---QSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655553 344455555567788888888888765443
No 77
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.13 E-value=22 Score=38.78 Aligned_cols=141 Identities=25% Similarity=0.313 Sum_probs=78.2
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh--hccCCCcchhhhhhhcccchhh-hhh-----hHHH---H-------H
Q 019002 130 EADSLRRKLKEMDEMENNLASELDKVQTAMN--TSKSGKFTESILADKAGVDTDA-LRS-----DIAE---K-------L 191 (347)
Q Consensus 130 ea~~L~~~l~eme~~E~~l~~ele~~~~~~~--~~q~~~s~~s~~~~~a~~~~e~-~~s-----~il~---~-------L 191 (347)
|-..|..++.||+.-=...|.|+|..+.++. -++++.+..++-+.+..+-.|+ .|- .|++ + |
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999888888999998888764 4556666653333332222222 221 1433 3 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh----HHhH-------HHHHHHHHHH---HHHHHHHHHHhhhhhhhh
Q 019002 192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSP----AQRE-------KMLNKQLHSL---IEQLEVKQTQAEGLVSEI 257 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp----aQRE-------k~LEkrLhSL---tEqL~~KQaQaE~L~tE~ 257 (347)
.+++.|..+|+..++++-..=+.|+....+=-+. --|| .+||...-|| .-.|-+-|--.|||.-||
T Consensus 124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei 203 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI 203 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence 4455555566655555544444444332221111 0111 2344433333 334566677788999999
Q ss_pred hhhHHhhhHHHHH
Q 019002 258 HLKEKELETLNGL 270 (347)
Q Consensus 258 nalelqLErLn~l 270 (347)
+-++-+.|=||.+
T Consensus 204 kRleEe~elln~q 216 (772)
T KOG0999|consen 204 KRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776666443
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.02 E-value=20 Score=37.78 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=36.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 108 EENAAYEK-AISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 108 eenaayek-Ais~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
+.-..|++ =+.|-++...++++|++.|...+.-++...+.....+-..++.+
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKL 391 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556777 67888888899999999988887777766655544444444333
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.16 E-value=1.2e+02 Score=35.07 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 019002 112 AYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLAS 150 (347)
Q Consensus 112 ayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ 150 (347)
-.+..+..|.++|.++......++.++.+.+.....++.
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~ 330 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD 330 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333444455555555555555555555555544444443
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.01 E-value=92 Score=33.57 Aligned_cols=147 Identities=27% Similarity=0.376 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHHHHHHHHHhhhccCCCcch--hhhhhhcccc
Q 019002 106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMEN----NLASELDKVQTAMNTSKSGKFTE--SILADKAGVD 179 (347)
Q Consensus 106 lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~----~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~ 179 (347)
||-|-..|..-|..-....++|+++...-...|++-..--. .|...|-.++..+.........+ |+.-..-..+
T Consensus 9 lq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E 88 (617)
T PF15070_consen 9 LQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAE 88 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHH
Confidence 44555556666666656666666665555555544333332 33333333443333333222222 1111110111
Q ss_pred hhhhhhh---HHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHH-------------HHH
Q 019002 180 TDALRSD---IAEKLEVK---KKELS----SMEERVQELEKKWAQVQNDALKQPSPAQREKMLN-------------KQL 236 (347)
Q Consensus 180 ~e~~~s~---il~~Le~k---k~el~----~~e~~v~~lek~w~~vq~~alk~PspaQREk~LE-------------krL 236 (347)
.+.++.. +..+|+.. +..|+ ..|.++.+||+.+...++.. ..|.|.|+ .|.
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~------~D~~kLLe~lqsdk~t~SRAlsQN 162 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ------EDRQKLLEQLQSDKATASRALSQN 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhcccchHHHHHHHhH
Confidence 1122111 12222222 22333 33566777777666665543 23455554 466
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh
Q 019002 237 HSLIEQLEVKQTQAEGLVSEIH 258 (347)
Q Consensus 237 hSLtEqL~~KQaQaE~L~tE~n 258 (347)
+.|=+||+.=|.-.-.|++|..
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 7778888887777777777653
No 81
>PRK01156 chromosome segregation protein; Provisional
Probab=79.86 E-value=93 Score=33.53 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 240 IEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 240 tEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
++.|..+-.+.+.+..+++.+..+|+.++.-+..|.
T Consensus 514 ~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~ 549 (895)
T PRK01156 514 INKSINEYNKIESARADLEDIKIKINELKDKHDKYE 549 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666655555443
No 82
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.41 E-value=29 Score=29.42 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 119 SCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 119 ~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
+.+.++|=--.||.+|++|+-+|+.--..|+.||.......
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555557999999999999999999999999877543
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.28 E-value=1.2e+02 Score=34.71 Aligned_cols=142 Identities=23% Similarity=0.272 Sum_probs=81.4
Q ss_pred hccccchHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 019002 89 LSSHSSTREQTQLREVTLQEENAAYE--------------KAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDK 154 (347)
Q Consensus 89 lnaHSat~eQaq~Re~tlqeenaaye--------------kAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~ 154 (347)
+|+|- -|.++++.||+...-+.. -+|....-.+.-.++|.+.|+..+||..++-..|.-|-..
T Consensus 435 ~nak~---~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~ 511 (1118)
T KOG1029|consen 435 LNAKK---KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE 511 (1118)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66664 466778888888766554 3455555566667889999999999999888888766555
Q ss_pred HHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHH
Q 019002 155 VQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKK-KELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLN 233 (347)
Q Consensus 155 ~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk-~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LE 233 (347)
+...+...|...-. +.+-+|. |+.+-.+| .=...+++++.+|+|+=.. . -+-=-.+.
T Consensus 512 l~~qlkq~q~a~~~-----------~~~~~s~-L~aa~~~ke~irq~ikdqldelskE~es-----k-----~~eidi~n 569 (1118)
T KOG1029|consen 512 LNHQLKQKQSAHKE-----------TTQRKSE-LEAARRKKELIRQAIKDQLDELSKETES-----K-----LNEIDIFN 569 (1118)
T ss_pred HHHHHHHhhhhccC-----------cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-----HHhhhhHH
Confidence 55444444432211 1111111 22222222 2234566666666665332 1 11112356
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 019002 234 KQLHSLIEQLEVKQTQAEGLVS 255 (347)
Q Consensus 234 krLhSLtEqL~~KQaQaE~L~t 255 (347)
.||..|-+-+-.+|.+.|-+-.
T Consensus 570 ~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 570 NQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777766667766665543
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.26 E-value=1.2e+02 Score=34.52 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh-hccCCCcchhhhhhhcccchhhhhhhH--
Q 019002 111 AAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN-TSKSGKFTESILADKAGVDTDALRSDI-- 187 (347)
Q Consensus 111 aayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~-~~q~~~s~~s~~~~~a~~~~e~~~s~i-- 187 (347)
.--.--|++|.|+..+-..|-..|..+++..-..-..|+.+++.....+. .+++-.+.. .....-+...+.+....
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~-q~~e~~~t~~eel~a~~~e 745 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLL-QGAEASKTQNEELNAALSE 745 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHH-hHHHhccCChHHHHHHHHH
Confidence 33334567899988888888899999998888888899999999998887 333333222 22333333344332111
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhcCCCh-------------HHhHHHHHHHHHHHHHH
Q 019002 188 -----------AEKLEVKKKELSSMEERVQELEKKWAQVQN-DALKQPSP-------------AQREKMLNKQLHSLIEQ 242 (347)
Q Consensus 188 -----------l~~Le~kk~el~~~e~~v~~lek~w~~vq~-~alk~Psp-------------aQREk~LEkrLhSLtEq 242 (347)
-++|.+|+....+| ..-+. -.+++-+- -+.-+++.+||..+--+
T Consensus 746 ~k~l~~~q~~l~~~L~k~~~~~es~-----------k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e 814 (970)
T KOG0946|consen 746 NKKLENDQELLTKELNKKNADIESF-----------KATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSE 814 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-----------HHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 11222222222222 22222 12222221 12234456677777777
Q ss_pred HHHHHHHhhhhhhhhhhhHHhhhHHHHH
Q 019002 243 LEVKQTQAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 243 L~~KQaQaE~L~tE~nalelqLErLn~l 270 (347)
+.+=+.|.+++..++-+.-..+|++...
T Consensus 815 ~~~~keq~~t~~~~tsa~a~~le~m~~~ 842 (970)
T KOG0946|consen 815 LTQLKEQIQTLLERTSAAADSLESMGST 842 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhhcc
Confidence 7777777777777777777777766433
No 85
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.91 E-value=16 Score=35.86 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhcCC-Ccccccccchhhhh
Q 019002 48 AASLSRLIRDLRLRLP-PPDISQRLPHLHAH 77 (347)
Q Consensus 48 AasL~rsiqdLRlRlP-Pp~isQrLPhLhAh 77 (347)
+.+.|+.||.+-|--- --.|+--.|--|+|
T Consensus 19 vE~iSkalQr~aLG~eYnITisSIiPTT~~e 49 (290)
T COG4026 19 VEVISKALQRLALGSEYNITISSIIPTTNVE 49 (290)
T ss_pred HHHHHHHHHHhhhcccceeEEEeeccCchHH
Confidence 4466777775544211 11345555655554
No 86
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.86 E-value=29 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHH
Q 019002 236 LHSLIEQLEVKQTQAEGLVSEIHLKEKELETL 267 (347)
Q Consensus 236 LhSLtEqL~~KQaQaE~L~tE~nalelqLErL 267 (347)
.+.+.-+|.+.+...+++..-+.....+|++|
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444
No 87
>PRK01156 chromosome segregation protein; Provisional
Probab=78.46 E-value=1e+02 Score=33.22 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=8.8
Q ss_pred chhHHHHHH-HHHHHHHH
Q 019002 317 NETLYKLML-LRSSFVLY 333 (347)
Q Consensus 317 g~~lrRlmL-lRsafVlY 333 (347)
|+..+|+.+ +|.++.-+
T Consensus 804 ~G~~~~~~la~rlala~~ 821 (895)
T PRK01156 804 GGEKTAVAFALRVAVAQF 821 (895)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 444566543 46555443
No 88
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.96 E-value=0.7 Score=48.65 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---hHHHHHHHHHHH
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEM---ENNLASELDKVQ 156 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~---E~~l~~ele~~~ 156 (347)
-.|++|+.--+.++.+++.++.+.-.|...|+.+..++-.. =..|+.|+|.+.
T Consensus 249 ~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR 304 (713)
T PF05622_consen 249 RRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELR 304 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35778887778888889988888888888888887776532 345667776665
No 89
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=77.93 E-value=2.5 Score=32.52 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=25.3
Q ss_pred ccccCHHHHHHHHHHhh----hHHHHHHHHHHhhhcC
Q 019002 30 PLVFTEEQQKYVRELDQ----KAASLSRLIRDLRLRL 62 (347)
Q Consensus 30 p~~ft~~Q~~~v~eLd~----kAasL~rsiqdLRlRl 62 (347)
.+-+||+|+..+.++=. +...+++.|+.+|..|
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l 75 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQEL 75 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988765 5567778888877654
No 90
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=77.81 E-value=7.1 Score=34.45 Aligned_cols=46 Identities=28% Similarity=0.401 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLAS 150 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ 150 (347)
.+|+.+..||..+-.++..++.|-.|+..|+.+|.+......+|..
T Consensus 84 e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578899999999999999999999999999999999877666643
No 91
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=77.63 E-value=99 Score=32.60 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=64.6
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 135 RRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 135 ~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
..++..++..++.|+.+.+++-...=-..+....+ .-+..|-.=|.=.++.|...+.+|+++++.=..
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~------------~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDE------------QNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888899999888876554433333332 111112233555667777788888876654221
Q ss_pred HhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhh------HHhhhHH
Q 019002 215 VQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEI--HLK------EKELETL 267 (347)
Q Consensus 215 vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~--nal------elqLErL 267 (347)
+| ..|..++.+|.+.=.+=...+..|++=. +.+ |++|||+
T Consensus 166 ------------~~-~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerI 213 (475)
T PRK10361 166 ------------ER-HTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRV 213 (475)
T ss_pred ------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHH
Confidence 11 3477777777776555555666665543 223 7778776
No 92
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.34 E-value=81 Score=31.43 Aligned_cols=125 Identities=16% Similarity=0.215 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHH
Q 019002 119 SCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKEL 198 (347)
Q Consensus 119 ~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el 198 (347)
.+++++.+...+...|...+.+=.-.=.+++.+++.++..+...-....+.. ............+...+.+...++
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~ 326 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGP----ERGEIANPVYQQLQIELAEAEAEI 326 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCc----ccccccChHHHHHHHHHHHHHHHH
Confidence 4455555554444444444433222334556666666665544322211110 001111122233445666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 199 SSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 199 ~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
..++.++..|.+.-...+.+.. ++..++.+...|..|....+...+.+-
T Consensus 327 ~~l~~~~~~l~~~~~~~~~~~~---------------------~~~~~~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 327 ASLEARVAELTARIERLESLLR---------------------TIPEVEAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------hchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555444433332 334455555555555555554444443
No 93
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.17 E-value=1.4e+02 Score=34.28 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~ 211 (347)
.+.+.|++.+.||..+..+++.|+..
T Consensus 491 ~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 491 SQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777778887777777776655
No 94
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.19 E-value=67 Score=29.93 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=24.1
Q ss_pred hhhhhccccchHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Q 019002 85 LSQQLSSHSSTREQTQLREVTLQEENAA----YEKAISSCESRI 124 (347)
Q Consensus 85 LalqlnaHSat~eQaq~Re~tlqeenaa----yekAis~c~~~i 124 (347)
|--.++.....+...+.+-.+|++|... |++-|...+.++
T Consensus 108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 108 LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 3456666677777777777888887654 333444444444
No 95
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=76.15 E-value=1.1e+02 Score=33.62 Aligned_cols=68 Identities=26% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---HH-HHHHHHHHHHHhhhccCCCcch
Q 019002 102 REVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEME---NN-LASELDKVQTAMNTSKSGKFTE 169 (347)
Q Consensus 102 Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E---~~-l~~ele~~~~~~~~~q~~~s~~ 169 (347)
++.++++.|..-++=|++.+..|..-..+...+.++-.+-..+. .+ ++.+|++++.-+...+...+.-
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L 261 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQL 261 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666633322222 22 3556666666555555444433
No 96
>PRK10698 phage shock protein PspA; Provisional
Probab=74.31 E-value=52 Score=30.60 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=55.8
Q ss_pred hhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 80 AYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 80 As~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
-..|=+||+-+--. --..|..|.....+..+.|+.-+...+..+..=......|+.+++++..-...|.+....|+...
T Consensus 72 e~kA~~Al~~G~Ed-LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 72 QEKAELALRKEKED-LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565544211 11245556667777777888888777777777777778888888888888888888887777655
Q ss_pred hhc
Q 019002 160 NTS 162 (347)
Q Consensus 160 ~~~ 162 (347)
...
T Consensus 151 ~~~ 153 (222)
T PRK10698 151 DVR 153 (222)
T ss_pred HHH
Confidence 443
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.26 E-value=2.2e+02 Score=34.90 Aligned_cols=144 Identities=24% Similarity=0.334 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEMDE----MENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIA 188 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~eme~----~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il 188 (347)
|.+---.|+++|.+=..+..-|..+|+++.. ...++..++.++++.++. .+.+.+ .++
T Consensus 796 ~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~--------------~~~~~~----~~~ 857 (1822)
T KOG4674|consen 796 EMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE--------------LESELK----SLL 857 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--------------HHHHHH----HHH
Confidence 4444456888888888888888888777654 344445555566644432 122222 246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh------HHhHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhhh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSP------AQREKMLNK---QLHSLIEQLEVKQTQAEGLVSEIHL 259 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp------aQREk~LEk---rLhSLtEqL~~KQaQaE~L~tE~na 259 (347)
..|.++..++..|+.++.+|+|+-.-+....+---+| ..|+-.|++ +...|.++|+.-+.+.+-+-.+.-+
T Consensus 858 ~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s 937 (1822)
T KOG4674|consen 858 TSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSS 937 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999988776555443332 333333333 3445678888888887777777777
Q ss_pred hHHhhhHHHHHHhhh
Q 019002 260 KEKELETLNGLRRRI 274 (347)
Q Consensus 260 lelqLErLn~l~Rn~ 274 (347)
.+.=|+..+.-+-.+
T Consensus 938 ~eqsl~~~ks~lde~ 952 (1822)
T KOG4674|consen 938 LEQSLESVKSELDET 952 (1822)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766555444
No 98
>PRK11519 tyrosine kinase; Provisional
Probab=74.01 E-value=95 Score=33.20 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 141 MDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEK 210 (347)
Q Consensus 141 me~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek 210 (347)
+++-=..++.+|+.++.++..-+.....- +.+......++.+.+.+.++..++.+..+|..
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~v---------d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSV---------DLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677777777776544332211 11111223455566666666666666655543
No 99
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=73.91 E-value=84 Score=29.93 Aligned_cols=204 Identities=18% Similarity=0.196 Sum_probs=124.7
Q ss_pred hhHhhhhhcCCCCCchhhhccCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhh--hhhhhhhh
Q 019002 6 AWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLH--AHSLAYSA 83 (347)
Q Consensus 6 AWAaDVVgg~g~~~~~~~~~~~~~p~~ft~~Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLh--AhSLAs~a 83 (347)
.=+.|||.|--..-++-|. |=.+++.|+.+||..-..|.+++-.|=-+ -.++++-+--+- .+.||..-
T Consensus 4 ~~~~d~~~~~~~k~~E~D~--------wF~~k~~~ie~LE~qLk~L~k~~~~lv~~--r~eLa~~~~eFa~s~~~L~~~E 73 (234)
T cd07665 4 NKATDAVSKMTIKMNESDV--------WFEEKLQEVECEEQRLRKLHAVVETLVNH--RKELALNTALFAKSLAMLGSSE 73 (234)
T ss_pred hHHHHHHhccccCcCCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 4467999987733332111 34688999999999999999998766211 012222221110 02222110
Q ss_pred ---hh-------h-hhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHH
Q 019002 84 ---AL-------S-QQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASEL 152 (347)
Q Consensus 84 ---aL-------a-lqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~el 152 (347)
+| | .+.+..-.--.||+.=-.|+-+=...|-..|..|+.=..+|..--...+.--.++... ++.+
T Consensus 74 ~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kK----r~~~ 149 (234)
T cd07665 74 DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKK----REAE 149 (234)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 11 1 2223333445677777778888889999999999888877776555544332222221 1112
Q ss_pred HHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHH
Q 019002 153 DKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKML 232 (347)
Q Consensus 153 e~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~L 232 (347)
+.... +|. -+++...+.|+..||.+|...++.|..|=..-.+.=.-=++||..
T Consensus 150 ~Kl~~------------------~~~---------~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~ 202 (234)
T cd07665 150 ARLLW------------------ANK---------PDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSK 202 (234)
T ss_pred HHHHh------------------cCC---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22210 111 057778889999999999999999998877666655556667666
Q ss_pred HHH--HHHHHHHHHHHHHHh
Q 019002 233 NKQ--LHSLIEQLEVKQTQA 250 (347)
Q Consensus 233 Ekr--LhSLtEqL~~KQaQa 250 (347)
|=+ ++.-+|++++-|.++
T Consensus 203 Dfk~~v~~fles~ie~qke~ 222 (234)
T cd07665 203 DFKNHIIKYLETLLHSQQQL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 644 678888888877665
No 100
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.78 E-value=1.4e+02 Score=32.47 Aligned_cols=179 Identities=16% Similarity=0.289 Sum_probs=91.4
Q ss_pred HHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHH----HHhHHHHHHHH-----------HHH
Q 019002 53 RLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLRE----VTLQEENAAYE-----------KAI 117 (347)
Q Consensus 53 rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re----~tlqeenaaye-----------kAi 117 (347)
-++.++.---|||+|-|-|-||-+.. .+.+++ +....+. .|. .++
T Consensus 240 s~vE~v~~~~pP~~vL~AL~~la~~~-------------------~~~i~~~~~~id~~~D~-e~lr~~l~d~s~~~~~l 299 (632)
T PF14817_consen 240 SIVEKVLTNHPPNHVLQALEHLASRR-------------------KAEIRSETESIDVRADA-EYLRNQLEDVSDESQAL 299 (632)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HHHHHHHHhhccchhhH-HHhhhccCCCCCCcccc
Confidence 45667777799999999888875432 222222 1111111 111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhh---hhhHHHHHHHH
Q 019002 118 SSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDAL---RSDIAEKLEVK 194 (347)
Q Consensus 118 s~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~---~s~il~~Le~k 194 (347)
-...+-|+|.-.+...+-.....+..--++|..+|...-.+++..-.+.+ +-.++ ..+.+.=.+ ...|.+..+..
T Consensus 300 psv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s-~~~al-~~ele~~~l~A~l~~L~se~q~L 377 (632)
T PF14817_consen 300 PSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSS-EREAL-ALELEVAGLKASLNALRSECQRL 377 (632)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-hhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555555566777777777776666633332 21222 111111001 11233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 195 KKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 195 k~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
++.-..-.+.+..|.++|-.|++- -....+||.|..+|...=.+....|++.-.-.+.+
T Consensus 378 ~~~~~~r~e~~~~Lq~K~q~I~~f---------------------rqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~ 436 (632)
T PF14817_consen 378 KEAAAERQEALRSLQAKWQRILDF---------------------RQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEF 436 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHH
Confidence 444445555666777777666653 22334555555555555555555555554444444
No 101
>PRK10869 recombination and repair protein; Provisional
Probab=73.54 E-value=1.2e+02 Score=31.69 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhhhhhhhhHHhhhHHHHH
Q 019002 231 MLNKQLHSLIEQLEVKQT-QAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQa-QaE~L~tE~nalelqLErLn~l 270 (347)
.+|.||. ++..|..|=- ..+.+..-+..++.+|+.+++.
T Consensus 300 ~ie~Rl~-~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~ 339 (553)
T PRK10869 300 ELEQRLS-KQISLARKHHVSPEELPQHHQQLLEEQQQLDDQ 339 (553)
T ss_pred HHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 4555553 3455665554 5666666666666676666544
No 102
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.85 E-value=1.6e+02 Score=34.28 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH----HHHHHHHHHhhhc
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLA----SELDKVQTAMNTS 162 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~----~ele~~~~~~~~~ 162 (347)
-.+++++..|..-|-.|++.|.++.+-...-..+.+-+|....+.+ .++.++++++...
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~ 799 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTA 799 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHH
Confidence 3467788888888889999988887655554444444444433333 2344455544443
No 103
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.81 E-value=1.5e+02 Score=34.97 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCCcchhhhhccccc
Q 019002 243 LEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRR 290 (347)
Q Consensus 243 L~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n~e~d~aRnRf~r 290 (347)
|..+|...|-++.|.|.++++.. ..+...+.+.=++.-.||-...+
T Consensus 676 lk~~q~~~eq~~~E~~~~~L~~~--e~~~~e~~~~lseek~ar~k~e~ 721 (1317)
T KOG0612|consen 676 LKMLQNELEQENAEHHRLRLQDK--EAQMKEIESKLSEEKSAREKAEN 721 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhcccccHHHHHHH
Confidence 34455666666677776644444 33444444443344455544444
No 104
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.74 E-value=20 Score=35.91 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKWAQVQNDA-LKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w~~vq~~a-lk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
.++++..+.++..+.+++..|++.-..++... ...++|.+ ..++..+.+.+.....+++.+..++..++.++++
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEK-----KEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888866665532 23333333 3466677777777777777777777766666666
Q ss_pred H
Q 019002 267 L 267 (347)
Q Consensus 267 L 267 (347)
.
T Consensus 408 ~ 408 (451)
T PF03961_consen 408 S 408 (451)
T ss_pred h
Confidence 5
No 105
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.53 E-value=1.4e+02 Score=31.95 Aligned_cols=166 Identities=14% Similarity=0.266 Sum_probs=95.8
Q ss_pred hccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 89 LSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEA--------DSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 89 lnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea--------~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
-+.|-..-.+++.+...+.++|+..|++. +..++.-|+ ..|..+|++....-..|+.+.++....+.
T Consensus 250 ~kqh~v~~~ales~~sq~~e~~selE~ll-----klkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll 324 (521)
T KOG1937|consen 250 YKQHLVEYKALESKRSQFEEQNSELEKLL-----KLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLL 324 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45666666677777777777777766653 334444332 23444444444444444444444443332
Q ss_pred hccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHH
Q 019002 161 TSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLI 240 (347)
Q Consensus 161 ~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLt 240 (347)
+..-.- -+.-.+ .+.++.+ +.++++...+|...-+.++.=|..-..+-.+.-+.|-.+| -|.+..|.+-++
T Consensus 325 ~kkl~L---r~~l~~--~e~e~~e---~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~ 395 (521)
T KOG1937|consen 325 QKKLQL---REELKN--LETEDEE---IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEID 395 (521)
T ss_pred HHHHHH---HHHHhc--ccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHH
Confidence 211000 011111 2222222 2345555555555555555445555566666778999899 578999999998
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 241 EQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 241 EqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
-..-.--+-.-.+..|.+.|++|++..-
T Consensus 396 gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 396 GNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765555667788899999999988764
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.42 E-value=41 Score=34.95 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
+.|+...+|+...+.++..-.++-+.+|.. =|.+|..+.+++.+|++=+..+..+.-.|..++..|+.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~----------lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQ----------LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 456666667777766666666666665543 2568999999999999999999999999999999999998
Q ss_pred HHHhhhhcCCcchhhhhccccc
Q 019002 269 GLRRRIEGSNVEEDTARNRLRR 290 (347)
Q Consensus 269 ~l~Rn~~s~n~e~d~aRnRf~r 290 (347)
.+.|+-...=.+.=.+=.|+|+
T Consensus 108 ~q~r~qr~~La~~L~A~~r~g~ 129 (420)
T COG4942 108 VQEREQRRRLAEQLAALQRSGR 129 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 8886554433344455566655
No 107
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=72.01 E-value=23 Score=29.44 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh-hhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 019002 196 KELSSMEERVQELEKKWAQVQND-ALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVS 255 (347)
Q Consensus 196 ~el~~~e~~v~~lek~w~~vq~~-alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~t 255 (347)
+|++.+|+++......-..|+.. -..+.||-+|+ .||+.+.+|.++|-....++..|-.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~-~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARR-SLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHH-HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34455555555555555455433 34678998887 6899999988888766666555544
No 108
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=71.88 E-value=1.8e+02 Score=32.80 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 019002 197 ELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 197 el~~~e~~v~~lek~w~~vq~ 217 (347)
++..++..++.++.....++.
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666655554
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.33 E-value=1.5e+02 Score=31.84 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHH
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAE 189 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~ 189 (347)
...-.+-|...+..|.+-..+...+...++.|+......+.+....+.++... +.+-.=.+|++ +
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~--------~k~~~lL~d~e-------~ 394 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK--------KKTVELLPDAE-------E 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCcH-------H
Confidence 33344455555556666666666666666666665555555555555444321 22222344444 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
-++..+.-+..-+.++..|..+|..+.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333445566777888888888654
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.96 E-value=1.1e+02 Score=29.81 Aligned_cols=60 Identities=33% Similarity=0.452 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELE 265 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLE 265 (347)
++|+..|.+|.....++....++-.. |+.++..+.+.+...-++...+..||+.++..++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~e-----------------l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAE-----------------LQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766655444333 4444455555554444455555555555544444
No 111
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.44 E-value=1.7e+02 Score=32.07 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019002 199 SSMEERVQELEKKWAQ 214 (347)
Q Consensus 199 ~~~e~~v~~lek~w~~ 214 (347)
...+.++..++.+|..
T Consensus 657 ~~~~~~~~~~~~~~~~ 672 (908)
T COG0419 657 EELEEKVEELEAEIRR 672 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677778888888873
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.28 E-value=1.9e+02 Score=35.36 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=46.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 98 QTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 98 Qaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
+...-|.+|...+..|++--.+.+.+|...--+.+.|+.++-+++.-=.+|+.+++..-
T Consensus 934 ~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~ 992 (1822)
T KOG4674|consen 934 EYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELST 992 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455678888899999999999999999999999999888777776666776664443
No 113
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.21 E-value=2.2e+02 Score=33.27 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhh-hhhhcccchhhhhh
Q 019002 107 QEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESI-LADKAGVDTDALRS 185 (347)
Q Consensus 107 qeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~-~~~~a~~~~e~~~s 185 (347)
|.|-+-+|+-|--|.+++..-.+|-+..+.++.|+-.--..|.-+-+++-..++.-|.- |+.++ -+.-++.+-+-+.+
T Consensus 293 rse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~-se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 293 RSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIF-SENEELENESLQVENEQLTS 371 (1195)
T ss_pred ccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-hcchhhhhhhHHHHHHHhhh
Confidence 34447788999999999999999999999999887544444433333332222222221 11111 11112222222332
Q ss_pred h-HHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhh--cCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 019002 186 D-IAE-KLEV--KKKELSSMEERVQELEKKWAQVQNDAL--KQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHL 259 (347)
Q Consensus 186 ~-il~-~Le~--kk~el~~~e~~v~~lek~w~~vq~~al--k~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~na 259 (347)
+ .++ .|+. +-+.|.. .+--++|-.|+..=+-.. |+=|--- ++||.++.-|+.|++.=+--.--|..|...
T Consensus 372 ~ralkllLEnrrlt~tlee--lqsss~Ee~~SK~leleke~KnLs~k~--e~Leeri~ql~qq~~eled~~K~L~~E~ek 447 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEE--LQSSSYEELISKHLELEKEHKNLSKKH--EILEERINQLLQQLAELEDLEKKLQFELEK 447 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhHhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1221 1122222 222356666665322211 2233322 247777777777777666666666666655
Q ss_pred hHHhhh
Q 019002 260 KEKELE 265 (347)
Q Consensus 260 lelqLE 265 (347)
+..+-+
T Consensus 448 l~~e~~ 453 (1195)
T KOG4643|consen 448 LLEETS 453 (1195)
T ss_pred HHHHHH
Confidence 554443
No 114
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.20 E-value=1.5e+02 Score=34.41 Aligned_cols=77 Identities=25% Similarity=0.360 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHH-
Q 019002 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELS- 199 (347)
Q Consensus 121 ~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~- 199 (347)
.+-+|.-..|+..+.+.+.|+...-.+|..++|+++..+.--| + -..|.+-+|++ .+.|-+||-+|.
T Consensus 395 k~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk-------E-QVDAAlGAE~M----V~qLtdknlnlEe 462 (1243)
T KOG0971|consen 395 KQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK-------E-QVDAALGAEEM----VEQLTDKNLNLEE 462 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHhhcHHHH----HHHHHhhccCHHH
Confidence 4455555678888888899999999999999999997665432 2 22345666766 466766666542
Q ss_pred ---HHHHHHHHHH
Q 019002 200 ---SMEERVQELE 209 (347)
Q Consensus 200 ---~~e~~v~~le 209 (347)
.+|+.|.+||
T Consensus 463 kVklLeetv~dlE 475 (1243)
T KOG0971|consen 463 KVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554
No 115
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.92 E-value=1.4e+02 Score=30.90 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH------HHHHHHHHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENN------LASELDKVQT 157 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~------l~~ele~~~~ 157 (347)
.+..+-....+.+..+..+..+..++.+.|+..++|++....+ |..++..+..
T Consensus 165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n 223 (563)
T TIGR00634 165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSN 223 (563)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhC
Confidence 3345555566667777777788889999999999999988655 6666555443
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.92 E-value=1.1e+02 Score=29.65 Aligned_cols=24 Identities=46% Similarity=0.722 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWA 213 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~ 213 (347)
+++.+|+++..++.+++.++.++.
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554443
No 117
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.99 E-value=1.7e+02 Score=31.43 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKE 261 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nale 261 (347)
+.+....||.+...+++.|+.+......| -|.||..|+|.|+.=..++..-..||+.+.
T Consensus 456 ek~~l~eeL~~a~~~i~~LqDEL~TTr~N-------------YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 456 EKESLEEELKEANQNISRLQDELETTRRN-------------YEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777777777777764333 789999999999999999999999998875
No 118
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.71 E-value=95 Score=28.43 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=54.9
Q ss_pred hhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 80 AYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 80 As~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
-..|-+||+-.--.-- ..|..|....++....|++-+...+..+.+=......|+.++.++...+..|.+....++...
T Consensus 72 ~~~A~~Al~~G~EdLA-r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~ 150 (219)
T TIGR02977 72 QEKAELALSKGREDLA-RAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRL 150 (219)
T ss_pred HHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554422211 224446667777777888888877777777777777888888888888888888887777654
Q ss_pred hhc
Q 019002 160 NTS 162 (347)
Q Consensus 160 ~~~ 162 (347)
..+
T Consensus 151 ~~~ 153 (219)
T TIGR02977 151 DVR 153 (219)
T ss_pred HHH
Confidence 443
No 119
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.11 E-value=1.9e+02 Score=34.60 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhh
Q 019002 93 SSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESIL 172 (347)
Q Consensus 93 Sat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~ 172 (347)
.+.-.+||.+-...|+|-++-|+...+.-+++.| |..+++++...-..--.+-.++++...+.+..+-.+...
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e-------L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~ 1662 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE-------LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQG 1662 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019002 173 ADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEG 252 (347)
Q Consensus 173 ~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~ 252 (347)
...-+...+.....+-++.+.--.--..-|.-.++-+|-..+-++- -||=|+||.-.-+=-.+|.-|+|++-+
T Consensus 1663 ~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~k-------l~~l~dLe~~y~~~~~~L~~~~aeL~~ 1735 (1758)
T KOG0994|consen 1663 LEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEK-------LDRLKDLELEYLRNEQALEDKAAELAG 1735 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHHHhhh
Q ss_pred hhhhhhhhHHhh
Q 019002 253 LVSEIHLKEKEL 264 (347)
Q Consensus 253 L~tE~nalelqL 264 (347)
|..+.++.-...
T Consensus 1736 Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1736 LEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHH
No 120
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=68.05 E-value=2.2e+02 Score=32.31 Aligned_cols=51 Identities=37% Similarity=0.449 Sum_probs=27.8
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019002 136 RKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQEL 208 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~l 208 (347)
-.|+|-++.=..|++|.|.+-+.+-+ .|.|.+||.-|-+|-.-|++|.-++
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~----------------------qs~iIkKLRAk~ke~etl~~K~ge~ 496 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLA----------------------QSAIIKKLRAKIKEAETLEEKKGEL 496 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH----------------------HHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 34555666666666666665544322 3456666666655555555544433
No 121
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.02 E-value=87 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQND 218 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~ 218 (347)
+++++-+...+.+.....++.++|...+..
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~ 159 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREE 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666655443
No 122
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.96 E-value=78 Score=31.01 Aligned_cols=143 Identities=23% Similarity=0.275 Sum_probs=73.1
Q ss_pred HHHHHhhhHHHHHHHHHHhhhc-----CCCcccccccchhhh-hhhhh-----hhhhhhhhccccchHHHHHHHHHHhHH
Q 019002 40 YVRELDQKAASLSRLIRDLRLR-----LPPPDISQRLPHLHA-HSLAY-----SAALSQQLSSHSSTREQTQLREVTLQE 108 (347)
Q Consensus 40 ~v~eLd~kAasL~rsiqdLRlR-----lPPp~isQrLPhLhA-hSLAs-----~aaLalqlnaHSat~eQaq~Re~tlqe 108 (347)
.|.||=.=|+-|-.+++--... .-+-+++-++-+|-+ .+||| .|.|--.|.-|.--|+. ..+-+.-+-
T Consensus 80 AVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~-R~~a~~r~~ 158 (267)
T PF10234_consen 80 AVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREE-RQRALARPL 158 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHH-HHHHHcCCc
Confidence 3567777777777776644110 011244445555554 34444 24444444444433332 112222223
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh
Q 019002 109 ENAAYEKAISSCES----RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR 184 (347)
Q Consensus 109 enaayekAis~c~~----~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~ 184 (347)
|...-||+|...-. +++.-.+....+.+.-..++..=.+-+.|||++++-|.+-|+- |
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v------------------R 220 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV------------------R 220 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------C
Confidence 44445555544444 4444444444444444455555555677888888877776643 3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019002 185 SDIAEKLEVKKKELSSM 201 (347)
Q Consensus 185 s~il~~Le~kk~el~~~ 201 (347)
-+.+++.|....||..+
T Consensus 221 PAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 221 PAFMDEYEKLEEELQKL 237 (267)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34456777777777654
No 123
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.88 E-value=2.6e+02 Score=32.75 Aligned_cols=147 Identities=20% Similarity=0.287 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR 184 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~ 184 (347)
+-+.|-+...+-+..|++.|.+.-++++++..+++..+.--.....+.+....++++-....+.- .+++
T Consensus 675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v----------~~s~- 743 (1200)
T KOG0964|consen 675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRV----------QESL- 743 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHh-
Confidence 34567777888888999999999999999999999999888888889988888777654433322 1222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHH--hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQ--REKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK 262 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQ--REk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalel 262 (347)
-.+-..|+..+..+..++.+...+|-+.... -+-+-||-- |=+-|.+....|...|.+=+.-.=-+.+=+++++-
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~se---l~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~ 820 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSE---LFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEA 820 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH---HHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234678888888888888888888887763 234556643 33455566666666655444333234444445554
Q ss_pred hhh
Q 019002 263 ELE 265 (347)
Q Consensus 263 qLE 265 (347)
.|.
T Consensus 821 ~l~ 823 (1200)
T KOG0964|consen 821 NLN 823 (1200)
T ss_pred HHH
Confidence 443
No 124
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=65.73 E-value=84 Score=27.06 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEM 141 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~em 141 (347)
+.+.|...+++|.+.+.+|..++....++
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 60 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEI 60 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999887766554
No 125
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.53 E-value=1.3e+02 Score=28.48 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
.+......|.+.+...++++..-..+...++..++-.+..-.....+++..+
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~ 185 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARR 185 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444455555444444333333334444443
No 126
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.38 E-value=39 Score=36.01 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQ-ELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~-~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
-||+.+|+.+-+||- |+|-. -||| .++++-|..|-|-|+--|..+.--..|+..+.+|
T Consensus 361 vDiinkLk~niEeLI--edKY~viLEK-------------------nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqle 419 (527)
T PF15066_consen 361 VDIINKLKENIEELI--EDKYRVILEK-------------------NDIEKTLQNLQEALANTQKHLQESRNEKETLQLE 419 (527)
T ss_pred HHHHHHHHHHHHHHH--HhHhHhhhhh-------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 457888888777763 33322 1222 3689999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCcchhhhhccc
Q 019002 264 LETLNGLRRRIEGSNVEEDTARNRL 288 (347)
Q Consensus 264 LErLn~l~Rn~~s~n~e~d~aRnRf 288 (347)
|++++.-|+.++-.-.-+---||++
T Consensus 420 lkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 420 LKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 9999999999974332223344544
No 127
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.24 E-value=1.3e+02 Score=28.20 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=7.0
Q ss_pred HHHHhHHHHHHhHHHHHHH
Q 019002 134 LRRKLKEMDEMENNLASEL 152 (347)
Q Consensus 134 L~~~l~eme~~E~~l~~el 152 (347)
++.++.+.+....+|+.+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n 141 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEEN 141 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 128
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.99 E-value=2e+02 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHh
Q 019002 33 FTEEQQKYVRELDQKAASLSRLIRDL 58 (347)
Q Consensus 33 ft~~Q~~~v~eLd~kAasL~rsiqdL 58 (347)
|.-++-..+.+-|..+..|..+|..|
T Consensus 153 FDGE~I~~la~~~~~~~~l~~Ai~~L 178 (650)
T TIGR03185 153 FDGEKIEALANPDRLASLLKEAIEVL 178 (650)
T ss_pred ccHHHHHHHhccccchHHHHHHHHHH
Confidence 45555555555555666566666654
No 129
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.75 E-value=47 Score=28.96 Aligned_cols=71 Identities=25% Similarity=0.444 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019002 129 QEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQEL 208 (347)
Q Consensus 129 ~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~l 208 (347)
.++..|+..+.++......|+++|.++.. .+.++. +.+.+.+.+.|+..|+.++..|
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------------------~~t~~e----l~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSS-------------------EPTNEE----LREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------CCCHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666551 122222 3467777788888888888877
Q ss_pred HHHHHHHhHhhhcCCChHHhHH
Q 019002 209 EKKWAQVQNDALKQPSPAQREK 230 (347)
Q Consensus 209 ek~w~~vq~~alk~PspaQREk 230 (347)
...|.. =||..+++
T Consensus 136 ~~~~~~--------vs~ee~~~ 149 (169)
T PF07106_consen 136 RSGSKP--------VSPEEKEK 149 (169)
T ss_pred HhCCCC--------CCHHHHHH
Confidence 766554 45666654
No 130
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.48 E-value=88 Score=28.89 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 019002 113 YEKAISSCESRI 124 (347)
Q Consensus 113 yekAis~c~~~i 124 (347)
|+.+|+-..+.-
T Consensus 59 Y~~~i~~AKkqR 70 (161)
T TIGR02894 59 YEEAIELAKKQR 70 (161)
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 131
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.44 E-value=1.6e+02 Score=29.10 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=12.5
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHhhh
Q 019002 133 SLRRKLKEMDEMENNLASELDKVQTAMNT 161 (347)
Q Consensus 133 ~L~~~l~eme~~E~~l~~ele~~~~~~~~ 161 (347)
.|...+..++..=..|+...+.++.++..
T Consensus 162 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 162 LLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 132
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=63.09 E-value=4.5 Score=36.20 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=12.9
Q ss_pred hhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 019002 84 ALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQT 157 (347)
Q Consensus 84 aLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~ 157 (347)
+++-+|+.=.+.|++...--..|+.||+.-.--.++|.++.|+..++.-.|....++++.+=...+.++.....
T Consensus 12 ~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~~ 85 (181)
T PF09311_consen 12 ALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESRT 85 (181)
T ss_dssp HHHHHHHHHHHCCHHHHT--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccch
Confidence 55666777777788777777889999999999999999999999999999999999999887777777666554
No 133
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.52 E-value=3e+02 Score=31.94 Aligned_cols=129 Identities=15% Similarity=0.213 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHH
Q 019002 111 AAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEK 190 (347)
Q Consensus 111 aayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~ 190 (347)
.-|..-..-.|....++...+..|+.++.++|.--+.|.+-...+| ++
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q--------------------------------~d 135 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQ--------------------------------DD 135 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HH
Confidence 4455555555556666666666777777766655444443333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHH
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l 270 (347)
|.+-+.||...-..+..||++.+.--++-+ | .=+-||-=.+-|+.+--|.-.+..|.+..-.+||++-..
T Consensus 136 ~ke~etelE~~~srlh~le~eLsAk~~eIf-------~---~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k 205 (1265)
T KOG0976|consen 136 KKENEIEIENLNSRLHKLEDELSAKAHDIF-------M---IGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEK 205 (1265)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhHHHH-------H---HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555444222211 1 122344445555555555555666666666666666666
Q ss_pred HhhhhcCCcch
Q 019002 271 RRRIEGSNVEE 281 (347)
Q Consensus 271 ~Rn~~s~n~e~ 281 (347)
+++-.+.|++-
T Consensus 206 ~~e~~~~nD~~ 216 (1265)
T KOG0976|consen 206 FKEDLIEKDQK 216 (1265)
T ss_pred HHHHhhcchHH
Confidence 66666555533
No 134
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.40 E-value=87 Score=28.57 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 019002 182 ALRSDIAEKLEVKKKELSSMEERVQ 206 (347)
Q Consensus 182 ~~~s~il~~Le~kk~el~~~e~~v~ 206 (347)
..|...+++|++.++++..++..++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777666665555
No 135
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=62.36 E-value=2.1e+02 Score=30.07 Aligned_cols=8 Identities=50% Similarity=0.468 Sum_probs=3.1
Q ss_pred hHHhhhHH
Q 019002 260 KEKELETL 267 (347)
Q Consensus 260 lelqLErL 267 (347)
++.=|+++
T Consensus 150 k~~l~~~~ 157 (514)
T TIGR03319 150 KEILLEEV 157 (514)
T ss_pred HHHHHHHH
Confidence 33334444
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.26 E-value=98 Score=26.30 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 106 LQEENAAYEKAISSCESRIQEKIQE 130 (347)
Q Consensus 106 lqeenaayekAis~c~~~i~ek~~e 130 (347)
|+.+...+..-+..++.+++.-..+
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~d 32 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLRED 32 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333
No 137
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.24 E-value=66 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
++.+.+..+.++..++..|..|+.++..
T Consensus 143 ll~Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 143 LLRDYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444
No 138
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.82 E-value=2.4e+02 Score=30.53 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhh------
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDAL------ 183 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~------ 183 (347)
+..|+.=|..|..-|.+-..+-..++.++.-+..-=.+|+..++.+++.....+...... .....+.++.
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~----~~~l~~leAe~~~~kr 162 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDY----LSRLSELEAEINTLKR 162 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH----hhhhhhhhhHHHHHHH
Confidence 456777788887777777666666666665555555555666666655554443333222 1111222222
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019002 184 -RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSE 256 (347)
Q Consensus 184 -~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE 256 (347)
...+-+++...|+|.+.+...++.+-|.-. .+.+ .+. +++.+..+|.|.|.-++.+-+.-..|
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld---~Etl-----lr~--d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLD---DETL-----LRV--DLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHH-----HHH--HHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 222355777778888888888877766432 2222 223 37788888888888777666554444
No 139
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.62 E-value=2.4e+02 Score=30.21 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
|.+++...+++-.++ ..|+.|+-.--+-+...+.-.+|+-++- +-.+-.+++..|.+----.|.|+.||-.+..+||+
T Consensus 375 i~~e~~rl~q~nd~l-~~~~~l~t~~Qq~e~~~lp~ave~l~ql-~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~ 452 (542)
T KOG0993|consen 375 IADEDSRLRQINDLL-TTVGELETQVQQAEVQNLPAAVEQLAQL-YKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEK 452 (542)
T ss_pred HHHHHHHHHHHHHhh-hhccccccchhHhhhhcchhhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544433 2344444433355666666666666663 34455788889999999999999999999999998
Q ss_pred HHHHHhhh
Q 019002 267 LNGLRRRI 274 (347)
Q Consensus 267 Ln~l~Rn~ 274 (347)
-....-++
T Consensus 453 e~~~~~~l 460 (542)
T KOG0993|consen 453 ERQSEQEL 460 (542)
T ss_pred HHHHHHHH
Confidence 76555555
No 140
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.71 E-value=2.2e+02 Score=29.53 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHH
Q 019002 111 AAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEK 190 (347)
Q Consensus 111 aayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~ 190 (347)
..|-. +..+.++.+...++...+...|+++...+.++..+++.++..++--. ++.+..... ++
T Consensus 151 D~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe-----------~~~l~~~E~-----e~ 213 (563)
T TIGR00634 151 DTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE-----------EADLQPGED-----EA 213 (563)
T ss_pred HHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------hCCcCCCcH-----HH
Confidence 34444 34566666666666667777777777777777777777665543221 222222222 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhcCCCh------HHhH--HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQND-ALKQPSP------AQRE--KMLNKQLHSLIEQLEVKQTQAEGLVSEIHL 259 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~~-alk~Psp------aQRE--k~LEkrLhSLtEqL~~KQaQaE~L~tE~na 259 (347)
|+.+.+.|+.-|+..+.+..--..+.++ .-..|+. +.+. +.++..+..+.+.|..=..+++-+..|+..
T Consensus 214 L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777777766665321 0001121 1111 113556777777777766666666555543
No 141
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.36 E-value=89 Score=34.24 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
-+.++....++.|...+.+..+-.++...+...++|++.....|..+++..+
T Consensus 510 ~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 510 LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999988888877777777778888888888888777777765
No 142
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.34 E-value=3.5e+02 Score=31.75 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019002 103 EVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDE 143 (347)
Q Consensus 103 e~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~ 143 (347)
-.++-++...-++-|..|......-..|+..|....+||+.
T Consensus 246 ~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~ 286 (1174)
T KOG0933|consen 246 RKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQ 286 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666777888999999999999999999998888876
No 143
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=59.29 E-value=1.3e+02 Score=31.79 Aligned_cols=116 Identities=24% Similarity=0.369 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhh
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDAL 183 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~ 183 (347)
.+...|+..|++.+...++.=++- +...+...++++..-|.+|-++++..+++.+ ..+
T Consensus 153 ~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~----------------~l~---- 210 (447)
T KOG2751|consen 153 EDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEA----------------ELD---- 210 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH----
Confidence 355678899998887777654433 5566777888888889999888888774321 011
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019002 184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSE 256 (347)
Q Consensus 184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE 256 (347)
.-+.+++.++.++..-++.. |.- ..+...|- =..++-||||--|-.--|+|++-|..+
T Consensus 211 --~~l~e~~~~~~~~~e~~~~~------~~e-y~~~~~q~------~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 211 --HQLKELEFKAERLNEEEDQY------WRE-YNNFQRQL------IEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred --HHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHhh------hcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 11467777777776544432 322 22222211 124555677766666666666655433
No 144
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=58.97 E-value=3.5e+02 Score=31.54 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=35.7
Q ss_pred CChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 223 PSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 223 PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
|.-.|+|.+ .++.|.+.|.+--.....++.+.-..+.+++++++..||+
T Consensus 257 ~~~i~~~~~---~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i 305 (1109)
T PRK10929 257 PKSIVAQFK---INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTL 305 (1109)
T ss_pred ChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666643 3566677777666667778888888888899998888877
No 145
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=58.64 E-value=1.3e+02 Score=26.50 Aligned_cols=106 Identities=19% Similarity=0.322 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccchhhhhhhHHHHHHHHHHHHHH
Q 019002 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDTDALRSDIAEKLEVKKKELSS 200 (347)
Q Consensus 123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~e~~~s~il~~Le~kk~el~~ 200 (347)
.+|+...+...|+..|+..-.--.++.++|...+++++.-..-...+ =.++|+.....+ ++...++|+.++ ..
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~--k~~~~~eL~er~---E~ 81 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVS--KEEAVDELEERK---ET 81 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhh--HHHHHHHHHHHH---HH
Confidence 45666667777777777777766777777666666555433332222 234455444432 233334444333 34
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019002 201 MEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQA 250 (347)
Q Consensus 201 ~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQa 250 (347)
+|-+|..|||. |+.|+.|+..|-+.|..+...+
T Consensus 82 Le~ri~tLekQ-----------------e~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 82 LELRIKTLEKQ-----------------EEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhcc
Confidence 45555555553 4456677777776666665543
No 146
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=58.50 E-value=3.2 Score=43.83 Aligned_cols=79 Identities=29% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhHh---hhcCCCh-HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 191 LEVKKKELSSMEERVQELEK---KWAQVQND---ALKQPSP-AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek---~w~~vq~~---alk~Psp-aQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
++....++..++-+++.||. .|..+-.. .+..|.- +++=..|..+.-+|++.+-..++.+..+.+.+..++.+
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e 379 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQE 379 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33334444455545555553 68876555 2344443 22223344455566676666666666666666666655
Q ss_pred hhHHHH
Q 019002 264 LETLNG 269 (347)
Q Consensus 264 LErLn~ 269 (347)
...+..
T Consensus 380 ~~~l~~ 385 (722)
T PF05557_consen 380 KEQLLK 385 (722)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555433
No 147
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.26 E-value=2.3e+02 Score=29.30 Aligned_cols=38 Identities=11% Similarity=0.381 Sum_probs=29.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019002 178 VDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDA 219 (347)
Q Consensus 178 ~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~a 219 (347)
++-+.++ .+.+..+.|+..|+.++..|+.+|...+...
T Consensus 274 ~el~~l~----~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 274 IELEELK----QERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred hcchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554 7888889999999999999999987766543
No 148
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.84 E-value=84 Score=31.89 Aligned_cols=69 Identities=10% Similarity=0.194 Sum_probs=50.0
Q ss_pred HHHHHHHHhHhhhcCCChHHhHHHHH------HHHHHHHHHHHHHHHHh----hhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 208 LEKKWAQVQNDALKQPSPAQREKMLN------KQLHSLIEQLEVKQTQA----EGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 208 lek~w~~vq~~alk~PspaQREk~LE------krLhSLtEqL~~KQaQa----E~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
|..=|..++.-+-.-.+++.|...++ .+++.+..+|..-+..+ +.-+.++|.+-.++..||.+-+...+
T Consensus 109 l~~ff~a~~~la~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~ 187 (456)
T PRK07191 109 LNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKNRS 187 (456)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445555544443344777776554 67888888887766655 77899999999999999999988765
No 149
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=57.48 E-value=1.2e+02 Score=31.73 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=14.2
Q ss_pred hhhhhcccchhhhhhhHHHHHHHH
Q 019002 171 ILADKAGVDTDALRSDIAEKLEVK 194 (347)
Q Consensus 171 ~~~~~a~~~~e~~~s~il~~Le~k 194 (347)
.-..-+|+..+..|..|++++++.
T Consensus 137 ~le~~a~lt~~eak~~l~~~~~~~ 160 (514)
T TIGR03319 137 ELERISGLTQEEAKEILLEEVEEE 160 (514)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 344456666666666666666543
No 150
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.45 E-value=24 Score=32.61 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=15.7
Q ss_pred hhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 252 GLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 252 ~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
.+..|++..+-|+|.++++.+.+.
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777666664
No 151
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.27 E-value=66 Score=33.80 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
+..++++++.+|..+..||++-..++.. +..|.--+. .-.+++..|.+++.+.++++|.+..+--.++.+||.++
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~-l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEK-LGDSELYDQ--SRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556678888999999999988887764 444421111 11225666667777777777776666666666666555
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.07 E-value=1.6e+02 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhHHhhhHHHHHHhhhh
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLV--SEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~--tE~nalelqLErLn~l~Rn~~ 275 (347)
+|..+..+.|...-+| +....+. .-+.++...||+-+.+.-.+.
T Consensus 125 eL~~kf~~~i~evqQk-~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 125 ELYRKFESAIQEVQQK-TGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666655444 2222222 222344444555444444443
No 153
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=56.05 E-value=1.1e+02 Score=28.35 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHH
Q 019002 117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKK 196 (347)
Q Consensus 117 is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~ 196 (347)
-+||..++|..+.++-.-. -...|.++.+|+.|++++.++ .+.||+...
T Consensus 96 sancs~QVqqeL~~tf~rL--~~~Vd~~~~eL~~eI~~L~~~-----------------------------i~~le~~~~ 144 (171)
T PF04799_consen 96 SANCSHQVQQELSSTFARL--CQQVDQTKNELEDEIKQLEKE-----------------------------IQRLEEIQS 144 (171)
T ss_dssp --------------HHHHH--HHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHH
Confidence 5789988876554432111 123455666666666655522 256677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhc
Q 019002 197 ELSSMEERVQELEKKWAQVQNDALK 221 (347)
Q Consensus 197 el~~~e~~v~~lek~w~~vq~~alk 221 (347)
.++.+-+|+..|+.+....++.=|+
T Consensus 145 ~~k~LrnKa~~L~~eL~~F~~~yL~ 169 (171)
T PF04799_consen 145 KSKTLRNKANWLESELERFQEQYLQ 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7778888888888888887776554
No 154
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.93 E-value=1.4e+02 Score=26.14 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019002 117 ISSCESRIQEKIQEADSLRRKLKEMD 142 (347)
Q Consensus 117 is~c~~~i~ek~~ea~~L~~~l~eme 142 (347)
+-..++..-.+=+|+..|..+.+-++
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE 48 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLE 48 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555554443
No 155
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.41 E-value=1.5e+02 Score=26.16 Aligned_cols=67 Identities=24% Similarity=0.456 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHH
Q 019002 116 AISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKK 195 (347)
Q Consensus 116 Ais~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk 195 (347)
+|+..+.++..|+ +-|-.||.++.+.-...+.++..++ ++++..+
T Consensus 58 ~l~~tKkhLsqRI---d~vd~klDe~~ei~~~i~~eV~~v~--------------------------------~dv~~i~ 102 (126)
T PF07889_consen 58 SLSSTKKHLSQRI---DRVDDKLDEQKEISKQIKDEVTEVR--------------------------------EDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHH--------------------------------hhHHHHH
Confidence 4555555555443 3455666666666666666655444 5666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 019002 196 KELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 196 ~el~~~e~~v~~lek~w~~vq~ 217 (347)
.++.+....|..||-+-..+++
T Consensus 103 ~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 103 DDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777766666654
No 156
>PRK02119 hypothetical protein; Provisional
Probab=55.21 E-value=87 Score=24.86 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019002 197 ELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSE 256 (347)
Q Consensus 197 el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE 256 (347)
|++.||+.+.+||-+-+. +|.-+..|=+-+++-|.++..|...
T Consensus 3 ~~~~~e~Ri~~LE~rla~-----------------QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 3 IQQNLENRIAELEMKIAF-----------------QENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred chHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888877766 5556666666666666666554433
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.07 E-value=2.4e+02 Score=30.99 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
.++....++..++...+.+.+.-..|.+.++++.
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555554444
No 158
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.46 E-value=2.8e+02 Score=29.09 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 112 AYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 112 ayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
--.+-|...+++|.+..++...|+..|++.+.--..+..++-..+.+++
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445666777778888888888888888887766666666665554443
No 159
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.34 E-value=1.4e+02 Score=34.19 Aligned_cols=58 Identities=31% Similarity=0.384 Sum_probs=36.4
Q ss_pred HHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHH--------HHH------HHhhhhhhhhhhhHHhhhHHH
Q 019002 209 EKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLE--------VKQ------TQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 209 ek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~--------~KQ------aQaE~L~tE~nalelqLErLn 268 (347)
|++|-++++.-.|| -.|+.+.|.-++|.|-+.|. +|+ .|.|.-.+||.-|..+|-.++
T Consensus 428 eqe~iv~~nak~~q--l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 428 EQEWIVYLNAKKKQ--LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666665554443 46777888888888877774 232 234455567777777666553
No 160
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.68 E-value=2.1e+02 Score=27.52 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcCC-ChHHhHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhhhhhHHhhhHHH
Q 019002 198 LSSMEERVQELEKKWAQVQNDALKQP-SPAQREKMLNKQLHSLIEQLEVKQTQAEG--------LVSEIHLKEKELETLN 268 (347)
Q Consensus 198 l~~~e~~v~~lek~w~~vq~~alk~P-spaQREk~LEkrLhSLtEqL~~KQaQaE~--------L~tE~nalelqLErLn 268 (347)
++.++.++.+++.+-+.+. +...| .|.-+. |..|+.+|-.+|.+-..++.+ ...|-..++.+.+-..
T Consensus 216 i~~L~~~l~~~~~~l~~l~--~~~~~~~P~v~~--l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~ 291 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLR--SITPEQNPQVPS--LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQ 291 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhCCCCCCchHH--HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433 23455 787666 777777777777665554433 2233334444444444
Q ss_pred HHHhhhh
Q 019002 269 GLRRRIE 275 (347)
Q Consensus 269 ~l~Rn~~ 275 (347)
..|..+.
T Consensus 292 ~~y~~~l 298 (362)
T TIGR01010 292 QQLKAAL 298 (362)
T ss_pred HHHHHHH
Confidence 4444443
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.51 E-value=3.4e+02 Score=29.84 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=21.9
Q ss_pred HHHhhhHHHHHHHHHHhhh-----------cCCCcccccccchhh
Q 019002 42 RELDQKAASLSRLIRDLRL-----------RLPPPDISQRLPHLH 75 (347)
Q Consensus 42 ~eLd~kAasL~rsiqdLRl-----------RlPPp~isQrLPhLh 75 (347)
.++-.....+.+.++++|. .=|.|--.+-||..|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg~~l~~~~ 471 (908)
T COG0419 427 EELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH 471 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 3334455556666666554 457888888788777
No 162
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.40 E-value=96 Score=30.25 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
++.+|..|..++...+.+...|..+++.-+..|+|.+.+...+.
T Consensus 247 l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 247 LEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence 44444444444444444444455555555555555555444443
No 163
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.07 E-value=1.6e+02 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQND 218 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~~ 218 (347)
|+.-.+.|.+|+..++.++.+|..-..+
T Consensus 57 le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 57 LERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455556666666666666554433
No 164
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.41 E-value=1.8e+02 Score=26.06 Aligned_cols=76 Identities=28% Similarity=0.337 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh------HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSP------AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK 262 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp------aQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalel 262 (347)
.+++....+...|++++. .+++.--. .+|-+.++.++..|-+++..=..+.+.|.+.+..++.
T Consensus 58 ~~~~~~~~~~~~~~~~A~-----------~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 58 RKLDEAEEEAEKWEKQAE-----------LALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555666666554 13333322 6788889999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhh
Q 019002 263 ELETLNGLRRRIE 275 (347)
Q Consensus 263 qLErLn~l~Rn~~ 275 (347)
.+..+..-...+.
T Consensus 127 kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 127 KLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 9999876555553
No 165
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=50.88 E-value=2.2e+02 Score=26.92 Aligned_cols=204 Identities=21% Similarity=0.243 Sum_probs=118.7
Q ss_pred hhhHhhhhhcCCCCCchhhhccCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhh-hcCCCcccccccchhhh--hhhhh
Q 019002 5 LAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLR-LRLPPPDISQRLPHLHA--HSLAY 81 (347)
Q Consensus 5 LAWAaDVVgg~g~~~~~~~~~~~~~p~~ft~~Q~~~v~eLd~kAasL~rsiqdLR-lRlPPp~isQrLPhLhA--hSLAs 81 (347)
+.=+.|||+|-.-.-++-|. |=.+.+.|+.+|+..-..|..++-.|= .| .+++.-+-.+-. ++||.
T Consensus 3 ~~~~~~~~~~~~~k~~E~D~--------~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~r---kela~~~~efa~s~~~L~~ 71 (234)
T cd07664 3 VNKAADAVNKMTIKMNESDA--------WFEEKQQQFENLDQQLRKLHASVESLVCHR---KELSANTAAFAKSAAMLGN 71 (234)
T ss_pred hhHHHHHHHhccccccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence 34467899887733332111 346789999999999988888887652 11 122222221111 22222
Q ss_pred h---hhhh--------hhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 019002 82 S---AALS--------QQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLAS 150 (347)
Q Consensus 82 ~---aaLa--------lqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ 150 (347)
. .+|+ .+.+..-.--.||+.=-.||-+=...|-..|..++.=..+|..--...+..-.++.....
T Consensus 72 ~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~---- 147 (234)
T cd07664 72 SEDHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKRE---- 147 (234)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1 0111 112222233467777777777788889999998888777777544443332222222111
Q ss_pred HHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHH
Q 019002 151 ELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREK 230 (347)
Q Consensus 151 ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk 230 (347)
.++.+. . +|. -+|+++.+.|+..+|.++...+++|..|-++..+-=--=++|+
T Consensus 148 ~~~Kl~-----------------~-~~k---------~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er 200 (234)
T cd07664 148 AEAKLQ-----------------Y-ANK---------PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKER 200 (234)
T ss_pred HHHHHh-----------------h-cCc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 0 110 0578888999999999999999999999877665544445555
Q ss_pred HH--HHHHHHHHHHHHHHHHHh
Q 019002 231 ML--NKQLHSLIEQLEVKQTQA 250 (347)
Q Consensus 231 ~L--EkrLhSLtEqL~~KQaQa 250 (347)
.. -.-++..+|..++-|.++
T Consensus 201 ~~dfk~~l~~fles~ie~qke~ 222 (234)
T cd07664 201 VKDFKTVIIKYLESLVQTQQQL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44 455677777777655443
No 166
>PRK12704 phosphodiesterase; Provisional
Probab=50.72 E-value=1.8e+02 Score=30.50 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=13.0
Q ss_pred hhhhcccchhhhhhhHHHHHHH
Q 019002 172 LADKAGVDTDALRSDIAEKLEV 193 (347)
Q Consensus 172 ~~~~a~~~~e~~~s~il~~Le~ 193 (347)
-..-+|+..+..|.-|+++++.
T Consensus 144 l~~~a~lt~~ea~~~l~~~~~~ 165 (520)
T PRK12704 144 LERISGLTAEEAKEILLEKVEE 165 (520)
T ss_pred HHHHhCCCHHHHHHHHHHHHHH
Confidence 3444666666666666665554
No 167
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.58 E-value=1.9e+02 Score=26.44 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHH
Q 019002 227 QREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 227 QREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l 270 (347)
+|-+..+.++..|-.++.+=+.+++.|.+.+..++.+++.+...
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888888888888888887544
No 168
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.19 E-value=3.4e+02 Score=28.86 Aligned_cols=15 Identities=20% Similarity=-0.113 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHHH
Q 019002 318 ETLYKLMLLRSSFVL 332 (347)
Q Consensus 318 ~~lrRlmLlRsafVl 332 (347)
++-+|.+++=..+|+
T Consensus 426 ~~P~~~~~l~~~~~~ 440 (754)
T TIGR01005 426 YFPKKGPIVGLAAVL 440 (754)
T ss_pred CCCchHHHHHHHHHH
Confidence 334555555544443
No 169
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.46 E-value=2.5e+02 Score=27.16 Aligned_cols=52 Identities=12% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 108 EENAAYEKA---ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 108 eenaayekA---is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
+...+|+|| +..|...+.++.+|...+.....-.+.--..+++..+.++..+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 4456667777777777777777666666677777777777555
No 170
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=49.19 E-value=4.4e+02 Score=29.80 Aligned_cols=45 Identities=33% Similarity=0.358 Sum_probs=40.7
Q ss_pred ChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 224 SPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 224 spaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
|.-||=+.+|.+|..||--|.-|-+.+|..+--.|-++.+||-|.
T Consensus 367 ~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~ 411 (786)
T PF05483_consen 367 TEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELK 411 (786)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH
Confidence 347898999999999999999999999999999999999998873
No 171
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=49.13 E-value=1.5e+02 Score=28.16 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=48.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcc
Q 019002 102 REVTLQEENAAYEKAISSCESRIQEK----IQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAG 177 (347)
Q Consensus 102 Re~tlqeenaayekAis~c~~~i~ek----~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~ 177 (347)
-||.|+-|.+.+++-|+..++....+ -....+++..|+.|=.+..+ +|-+.. + ++++.|
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~---ql~~~~-------------~-~~~~~~ 159 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKER---QLRELE-------------E-GRSKSG 159 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHH---HHHhhh-------------c-cCCCCC
Confidence 57889999999999999988888773 22334445544444332211 111111 1 222222
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 178 VDTDALRSDIAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 178 ~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
. .|.+.+.+|+.+|++|..||--.
T Consensus 160 ~-----------~l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 160 K-----------NLKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred C-----------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 35566777788888888777544
No 172
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.89 E-value=5e+02 Score=30.41 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019002 101 LREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEM 141 (347)
Q Consensus 101 ~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~em 141 (347)
.|+.+=+...+.-+..|..++..|.+.-.++..|...+..+
T Consensus 735 aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666555555555544444
No 173
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=48.86 E-value=3.3e+02 Score=28.36 Aligned_cols=53 Identities=19% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
.......+...+..+..--.+...++.+.......=.+|..++..+...+.+.
T Consensus 304 ~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 304 ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 33333344444444444444444455555555555555555555555555443
No 174
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=48.70 E-value=2.6e+02 Score=26.96 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhh
Q 019002 107 QEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSD 186 (347)
Q Consensus 107 qeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~ 186 (347)
+++-.-.+-=.....+|+.|--+.++.=.+-.|-|+.--+++....+..+..+.-+++.+..+ +. -.+.-+-+-.
T Consensus 17 eeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~a----dr-K~eEVarkL~ 91 (205)
T KOG1003|consen 17 EEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKA----DR-KYEEVARKLV 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHH
Confidence 334333344444555666666666776666667777766677666666666665554443222 00 0000011222
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh-----HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019002 187 IAE-KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSP-----AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK 260 (347)
Q Consensus 187 il~-~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp-----aQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nal 260 (347)
|.+ +|+.--.-...-|.+...|+-.-.+|..| +|+-+- -|++-..+..+.-|++.|-.--+-||-..-=+..|
T Consensus 92 iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n-lk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakL 170 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQSEELEEDLRILDSN-LKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKL 170 (205)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333 44444444444445555555555555332 333222 58899999999999999988888787776666677
Q ss_pred HHhhhHHH
Q 019002 261 EKELETLN 268 (347)
Q Consensus 261 elqLErLn 268 (347)
+++.++|.
T Consensus 171 eke~DdlE 178 (205)
T KOG1003|consen 171 EKERDDLE 178 (205)
T ss_pred cccHHHHH
Confidence 77666664
No 175
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.38 E-value=5.1e+02 Score=30.35 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
..+..+|..+.+.|..-+..+..+..++..++..+.++....
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777777777766665444
No 176
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.28 E-value=3.8e+02 Score=28.77 Aligned_cols=162 Identities=22% Similarity=0.310 Sum_probs=108.1
Q ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhh-hhhhhhhhhhccccch-------------
Q 019002 30 PLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSL-AYSAALSQQLSSHSST------------- 95 (347)
Q Consensus 30 p~~ft~~Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSL-As~aaLalqlnaHSat------------- 95 (347)
+++|-+--+|.+++|.+. -+|-++.||.- --.|+|.-- |.-+|+---.|||---
T Consensus 343 fAaMEetHQkkiEdLQRq---HqRELekLreE---------KdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvns 410 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQ---HQRELEKLREE---------KDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNS 410 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 677877788888888764 35666766642 233555433 4455666667777321
Q ss_pred -----------HHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 96 -----------REQTQLREVTLQE--------ENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 96 -----------~eQaq~Re~tlqe--------enaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
--|+.+||..... ||++...|+..-++-++.=++|-..|..--+|+. +.|.+|++.+.
T Consensus 411 dveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn---nRLaaEItrLR 487 (593)
T KOG4807|consen 411 DVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELN---NRLAAEITRLR 487 (593)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh---hHHHHHHHHHH
Confidence 1256677765544 6888888888888888888888888888777765 57888888877
Q ss_pred HHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019002 157 TAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQE 207 (347)
Q Consensus 157 ~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~ 207 (347)
+ +-+.+++..+..-+.++..-+-|-+-..--.+++-.|+|++++.+.+|.
T Consensus 488 t-lltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 488 T-LLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred H-HhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4 4566666666556666666555544111123777788888888887774
No 177
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=47.01 E-value=4.9e+02 Score=29.75 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred hhhhhhhhHHhhhHHHHHHhhhhcCCc------chhhhhccccccccCC
Q 019002 253 LVSEIHLKEKELETLNGLRRRIEGSNV------EEDTARNRLRRVTSDR 295 (347)
Q Consensus 253 L~tE~nalelqLErLn~l~Rn~~s~n~------e~d~aRnRf~r~~s~~ 295 (347)
|...++-...|.+||+.+-|.+++++. ..|++|-+-+++++..
T Consensus 527 L~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar~Kp~~nLTKS 575 (861)
T PF15254_consen 527 LGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSARCKPGNNLTKS 575 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCcchhHHH
Confidence 445566667788999999999987643 6788888877766554
No 178
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.29 E-value=68 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEM 141 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~em 141 (347)
.|.+.....++.|..|+.++.+...+...++.+|.||
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666677777777777776666666666665
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.95 E-value=1.9e+02 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADS 133 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~ 133 (347)
++.+..+.|+..+...++.+..-...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~dl~~q~~~a~~ 42 (132)
T PF07926_consen 14 RLKEQEEDAEEQLQSLREDLESQAKIAQE 42 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333
No 180
>PRK12704 phosphodiesterase; Provisional
Probab=45.64 E-value=3.9e+02 Score=28.17 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 019002 116 AISSCESRIQEKIQEA 131 (347)
Q Consensus 116 Ais~c~~~i~ek~~ea 131 (347)
+....+..+.++..|+
T Consensus 58 ~~leaeeE~~~~R~El 73 (520)
T PRK12704 58 ALLEAKEEIHKLRNEF 73 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.55 E-value=68 Score=30.43 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=40.5
Q ss_pred ChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 224 SPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 224 spaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
|-.+|-..||+.+.+-...+.+=|.|++.|..|+..|+=++|.++.....+
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345777778888888888888889999999999999988888886555554
No 182
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=45.54 E-value=1.5e+02 Score=24.76 Aligned_cols=60 Identities=30% Similarity=0.340 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG 165 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~ 165 (347)
.++++...-++-.....++-+|++.|...|..+.+.... ...++.+++.++..+.....+
T Consensus 14 ~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 14 SLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666667777777777766666555 455666666666666555443
No 183
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.43 E-value=1.8e+02 Score=31.08 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=56.0
Q ss_pred HHHHHHHHhHhhhcCCC-hHHhHHHH------HHHHHHHHHHHHHHHHH----hhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 208 LEKKWAQVQNDALKQPS-PAQREKML------NKQLHSLIEQLEVKQTQ----AEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 208 lek~w~~vq~~alk~Ps-paQREk~L------EkrLhSLtEqL~~KQaQ----aE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
|..=|..+|.-+ .+|+ ++.|..++ =.+++.+..+|..-+.+ ++.-+.++|.+-.++..||.+-.....
T Consensus 121 l~~ff~al~~ls-~~P~~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~ 199 (627)
T PRK06665 121 LDDFWDSWQDLS-NYPEGLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQA 199 (627)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666544 4564 56666554 46888888888877754 567789999999999999999888765
Q ss_pred CCc---chhhhhccccc
Q 019002 277 SNV---EEDTARNRLRR 290 (347)
Q Consensus 277 ~n~---e~d~aRnRf~r 290 (347)
+.. +.-+.|+++=+
T Consensus 200 ~g~~~ndLlDqRD~ll~ 216 (627)
T PRK06665 200 MGDNPNDLLDRRDLLVD 216 (627)
T ss_pred CCCCchhhHHHHHHHHH
Confidence 322 23345555433
No 184
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.32 E-value=3.8e+02 Score=28.04 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQL-------EVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL-------~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.+++++..+++.-..+++..-....| =.+++.++..+.++| ..-+..+++|..+....+..|+++.
T Consensus 352 ~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~ 424 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR 424 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333 122444444444444 4444444444444443344444443
No 185
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.85 E-value=1.4e+02 Score=23.19 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhh
Q 019002 233 NKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRR 273 (347)
Q Consensus 233 EkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn 273 (347)
|.|+..|=..|+--.-.+|.|+..+-.-..++.+|..+.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433333
No 186
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=44.80 E-value=1.8e+02 Score=31.13 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=58.6
Q ss_pred HHHHHHHHHhHhhhcCCChHHhHHHHH------HHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 207 ELEKKWAQVQNDALKQPSPAQREKMLN------KQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 207 ~lek~w~~vq~~alk~PspaQREk~LE------krLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
.|..-|..+|.-+..--+++.|.-.|+ .+++++-.+|..-+. +++.-+.++|.+-.++..||.+-+...+
T Consensus 113 ~l~~ff~al~~ls~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~ 192 (613)
T PRK08471 113 DLQDYFNAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKEVEA 192 (613)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 366677777776665556777776654 577777777776654 4567889999999999999999988875
Q ss_pred CC-----cchhhhhcccc
Q 019002 277 SN-----VEEDTARNRLR 289 (347)
Q Consensus 277 ~n-----~e~d~aRnRf~ 289 (347)
+. .+.-+.|+++=
T Consensus 193 ~g~~~~~ndL~DqRD~ll 210 (613)
T PRK08471 193 GKTLKHANELRDKRDELE 210 (613)
T ss_pred CCCCCCchhhHHHHHHHH
Confidence 32 23344665543
No 187
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=44.48 E-value=2.5e+02 Score=27.09 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=47.7
Q ss_pred HHHHHHHHhHhhhcCCChHHhHHHH------HHHHHHHHHHHHHHH----HHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 208 LEKKWAQVQNDALKQPSPAQREKML------NKQLHSLIEQLEVKQ----TQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 208 lek~w~~vq~~alk~PspaQREk~L------EkrLhSLtEqL~~KQ----aQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
|..-|..++.-+-.-.+++.|+..+ =.+++.+..+|..-+ .+++..+.++|.+-.++..||..-+....
T Consensus 109 l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~ 187 (322)
T TIGR02492 109 LNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQVEA 187 (322)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555554443333456666544 467888877776554 45678899999999999999999988764
No 188
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=44.41 E-value=1.7e+02 Score=23.78 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019002 193 VKKKELSSMEERVQELEKK 211 (347)
Q Consensus 193 ~kk~el~~~e~~v~~lek~ 211 (347)
.|+++++.+..+++.++++
T Consensus 77 ~~~~~~~~L~~~l~~l~~e 95 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEE 95 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655544
No 189
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.36 E-value=33 Score=25.49 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCCcchhhhhccccc
Q 019002 239 LIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRR 290 (347)
Q Consensus 239 LtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n~e~d~aRnRf~r 290 (347)
+-.++.+.+++.+.+..|...++.++++|+ .+..-=...||++++=
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~------~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLK------NDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHcCC
Confidence 334444555555555555555555555552 1222224567777664
No 190
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.13 E-value=1.7e+02 Score=32.14 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 019002 106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQT 157 (347)
Q Consensus 106 lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~ 157 (347)
+.++....++.|...+.+..+-.++...+...++|++.....|..+++.++.
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667888888887777776677777777777777777777777777663
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.03 E-value=2.4e+02 Score=26.14 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 019002 79 LAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTA 158 (347)
Q Consensus 79 LAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~ 158 (347)
+++.++-|-.++.=-.+..|...-+...|+....+..--....+.++.-..|.+.|....+.++..-.++..+++.++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 13 ASSAAAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 019002 159 MNT 161 (347)
Q Consensus 159 ~~~ 161 (347)
++.
T Consensus 93 i~~ 95 (251)
T PF11932_consen 93 IEQ 95 (251)
T ss_pred HHH
No 192
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.96 E-value=51 Score=29.04 Aligned_cols=38 Identities=29% Similarity=0.241 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.||.++-.|..++-.=.+++.+++.|-++|+++.++|.
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 47889999999999999999999999999999999874
No 193
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=43.93 E-value=2.3e+02 Score=29.37 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHhhhcCCChHHhHHHH------HHHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 207 ELEKKWAQVQNDALKQPSPAQREKML------NKQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 207 ~lek~w~~vq~~alk~PspaQREk~L------EkrLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
.|..=|..++.-+-.--+++.|...| =.+++++..+|..-+. +++..+.++|.+-.++..||..-+....
T Consensus 120 ~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~ 199 (507)
T PRK07739 120 VLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVEP 199 (507)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555454444566666554 4578888888876554 5678899999999999999999888754
No 194
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=43.90 E-value=2.3e+02 Score=27.28 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWA 213 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~ 213 (347)
++|+++.++|+..+++|-.|.|.-.
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777766433
No 195
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.85 E-value=2.3e+02 Score=29.55 Aligned_cols=140 Identities=19% Similarity=0.159 Sum_probs=84.6
Q ss_pred hhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 83 AALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 83 aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
++|--++---++.-.=+-.|+++.--.-.--++-=.+--..+.+-.+|+..-..||-++-..|+.-++.+-.-+..+-|-
T Consensus 258 ~vL~~~~~eA~s~~~s~a~~~~~~v~a~~l~~~~~~~G~~e~l~s~~E~~e~seKl~~i~~lE~~~k~~v~~~e~~l~A~ 337 (418)
T KOG4570|consen 258 RVLQVMEKEAASPEDSKACREALDVLAAVLKALTSADGASEELSSNDEDNEGSEKLVEILDLEETEKSKVPQYEERLKAL 337 (418)
T ss_pred HHHHHHhhhccCchhhhhhHHHHHHHHHHHHHHhhhcchHHHHHhhhhhhhhhHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 34444443333333445566666543222222222233455677777888888888888777777777777777777777
Q ss_pred cCCCcch----hhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHH
Q 019002 163 KSGKFTE----SILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREK 230 (347)
Q Consensus 163 q~~~s~~----s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk 230 (347)
+++-.++ +++.-.-.+++-.++ +.+....+||+.++++-+.+ | ...+..+.+|--+||++
T Consensus 338 ~~kl~~ew~~~~eal~~rQl~~qlv~----er~~ti~~el~~l~eq~~q~---w-ff~nr~li~~kr~~~~~ 401 (418)
T KOG4570|consen 338 HSKLQAEWKIESEALLSRQLTTQLVK----ERLSTIEAELIALYEQNLQQ---W-FFDNRQLIQRKRQQREQ 401 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---H-HhhhHHHHhHHHHhhhh
Confidence 7776666 333333334444443 78888888888888776532 3 45555677777777774
No 196
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.78 E-value=2.9e+02 Score=27.55 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 019002 202 EERVQELEKKWAQV 215 (347)
Q Consensus 202 e~~v~~lek~w~~v 215 (347)
.++|-+|+++|+-+
T Consensus 190 ~~ev~~L~~r~~EL 203 (290)
T COG4026 190 PGEVYDLKKRWDEL 203 (290)
T ss_pred hhHHHHHHHHHHHh
Confidence 34455555555543
No 197
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.70 E-value=6.1e+02 Score=29.93 Aligned_cols=92 Identities=26% Similarity=0.324 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----------hHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELE-------KKWAQV----------QNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ 247 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~le-------k~w~~v----------q~~alk~PspaQREk~LEkrLhSLtEqL~~KQ 247 (347)
..+.++.++++.||+..+-+-+.|= +..+.. |.....-.|-.-|+|-+-+.+..|--.+.-.-
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~k 410 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTK 410 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3355677777777775554444332 222222 22333445667788888777777766666666
Q ss_pred HHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 248 TQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 248 aQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
-+-..+..|+..++.+|+..+..++.+.+
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~ 439 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELES 439 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777778888888888777777776653
No 198
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.65 E-value=1.8e+02 Score=23.69 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
..|-+.++....+++.++.+..+++++-.-.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666777777777776655433
No 199
>PF13514 AAA_27: AAA domain
Probab=43.21 E-value=5.4e+02 Score=29.12 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
++......+..|+..+..++.++..+-
T Consensus 744 ~~~~~~~ri~~~~~~~~~f~~~~~~L~ 770 (1111)
T PF13514_consen 744 EIRELRRRIEQMEADLAAFEEQVAALA 770 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555544
No 200
>PRK00106 hypothetical protein; Provisional
Probab=43.16 E-value=4.5e+02 Score=28.19 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 235 QLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 235 rLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
++..++++...+-...-+|+.| .+++.=|+++..
T Consensus 147 ~~~~~~~~~~~~Le~~a~lt~~-eak~~l~~~~~~ 180 (535)
T PRK00106 147 QVEKLEEQKKAELERVAALSQA-EAREIILAETEN 180 (535)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHH
Confidence 3445555555555555555555 344444444443
No 201
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=42.82 E-value=5.2e+02 Score=29.55 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=94.5
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhh-hhhhhhhhhc----cccchHHHHHHHHHHhHHHHHHH
Q 019002 39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLA-YSAALSQQLS----SHSSTREQTQLREVTLQEENAAY 113 (347)
Q Consensus 39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLA-s~aaLalqln----aHSat~eQaq~Re~tlqeenaay 113 (347)
-.+++|..++.+++++...+|--+- -.-||- -+++. -..-|+.|+. +-+-+-.||--||.-+..||.-.
T Consensus 544 ~~~~~le~~~~a~qat~d~a~~Dlq---k~nrlk---Qdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~L 617 (961)
T KOG4673|consen 544 ALAAALEAQALAEQATNDEARSDLQ---KENRLK---QDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDL 617 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHH---HHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999988877765110 111221 11111 1222333321 12334556667888888888765
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhHHH-----------HHHhHHHHHHHHHHHHHhhhccCCCcch---------
Q 019002 114 EKAISSCESRIQEKIQEA----DSLRRKLKEM-----------DEMENNLASELDKVQTAMNTSKSGKFTE--------- 169 (347)
Q Consensus 114 ekAis~c~~~i~ek~~ea----~~L~~~l~em-----------e~~E~~l~~ele~~~~~~~~~q~~~s~~--------- 169 (347)
-.=+-..|++.+|-.|++ .=|.+.++-| +..|.+|-..|.+-|+-+...+-..-++
T Consensus 618 qrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~ 697 (961)
T KOG4673|consen 618 QRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNF 697 (961)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 555555555555554443 2233333333 3347788888887777666554433222
Q ss_pred ---hhhhhhcccchhhhh--hhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019002 170 ---SILADKAGVDTDALR--SDI---AEKLEVKKKELSSMEERVQELEKKWAQVQNDA 219 (347)
Q Consensus 170 ---s~~~~~a~~~~e~~~--s~i---l~~Le~kk~el~~~e~~v~~lek~w~~vq~~a 219 (347)
|..-..+.+.+|.-. ..+ ..++-.-+.|+...++.++.|+-+..+.+.+.
T Consensus 698 ~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~ 755 (961)
T KOG4673|consen 698 SLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEI 755 (961)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455444331 001 12344456677777777777777777766654
No 202
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.51 E-value=21 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhe
Q 019002 323 LMLLRSSFVLYILALHIAVFI 343 (347)
Q Consensus 323 lmLlRsafVlYIl~LHI~VfI 343 (347)
.++|=..||..|.+||||-=|
T Consensus 63 VLvmSvgFIasV~~LHi~gK~ 83 (88)
T KOG3457|consen 63 VLVMSVGFIASVFALHIWGKL 83 (88)
T ss_pred ehhhhHHHHHHHHHHHHHHHH
Confidence 467788999999999999543
No 203
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=42.21 E-value=3.4e+02 Score=26.54 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=88.7
Q ss_pred HHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 51 LSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQE 130 (347)
Q Consensus 51 L~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~e 130 (347)
|-.+|++|.-.+|||-+ +.-..+...|.....+. ..|.+....-..-|..|...+.....|
T Consensus 42 LP~sL~~l~~~~~~~~~---------------~~~i~~~~g~~~~~~~~----~~l~~l~~~~~~~l~~~~~~L~~E~~e 102 (356)
T cd09237 42 LPKLLVDLKERFEGENE---------------LMEIVSGLKSSSVDSQL----ELLRPQSASWVNEIDSSYNDLDEEMKE 102 (356)
T ss_pred CcHHHHHHhhhcCCchh---------------HHHHHHhccCCCcchhH----HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999977766 11122233343332221 224444444556677778777777777
Q ss_pred HHHHHHHhHH------HHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhh--HHHHHHHHHHHHHHHH
Q 019002 131 ADSLRRKLKE------MDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSD--IAEKLEVKKKELSSME 202 (347)
Q Consensus 131 a~~L~~~l~e------me~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~--il~~Le~kk~el~~~e 202 (347)
-..++.++.. -...-.+|++++.+....++.+ ..|| |.++++.-+..+..|-
T Consensus 103 d~~~R~k~g~~Wtr~~S~~~~~~l~~~~~k~~~~L~~A--------------------~~SD~~l~~~~~~~~~~l~lL~ 162 (356)
T cd09237 103 IEKMRKKILAKWTQSPSSSLTASLREDLVKLKKSLVEA--------------------SASDEKLFSLVDPVKEDIALLL 162 (356)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHHHHHHHc
Confidence 7777777654 2233345666666555444321 1222 4466666666666654
Q ss_pred HHHHHHHHHHHHHhHhhhcCCChHHhH-HHHH----H---HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 203 ERVQELEKKWAQVQNDALKQPSPAQRE-KMLN----K---QLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 203 ~~v~~lek~w~~vq~~alk~PspaQRE-k~LE----k---rLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
.-...++ . ..+.||+..++ ..|+ . ....-+-.|-.--..++.+..||..+..+|..
T Consensus 163 ~~~~~l~----~----~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~ 226 (356)
T cd09237 163 NGGSLWE----E----LFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQ 226 (356)
T ss_pred CChHHHH----H----HhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 2 11455543332 2221 1 23344455555555666777777777666643
No 204
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=42.09 E-value=3.9e+02 Score=27.14 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHhHHHH-------H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 019002 94 STREQTQLREVTLQEEN-------A-----------AYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKV 155 (347)
Q Consensus 94 at~eQaq~Re~tlqeen-------a-----------ayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~ 155 (347)
..|.|-|.+|-...++| + +.-|.|+.|-..+-.=.-|-+.|.++|+--......|.+|++..
T Consensus 17 tik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~ 96 (305)
T PF14915_consen 17 TIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESY 96 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Confidence 45778888887766665 2 34456667777777777789999999988888888888888887
Q ss_pred HHHhhhc
Q 019002 156 QTAMNTS 162 (347)
Q Consensus 156 ~~~~~~~ 162 (347)
...|.++
T Consensus 97 rsRLaaA 103 (305)
T PF14915_consen 97 RSRLAAA 103 (305)
T ss_pred HHHHHHH
Confidence 7666554
No 205
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=41.71 E-value=8.6 Score=42.10 Aligned_cols=150 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhh
Q 019002 115 KAISSCESRIQEKIQEADSLRRKLKE--------MDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSD 186 (347)
Q Consensus 115 kAis~c~~~i~ek~~ea~~L~~~l~e--------me~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~ 186 (347)
.+.+.++..+..-..|+..++.++.. ++.+..+|..++..++..++..+.+.+....+-..-..+-+.+.
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~-- 362 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT-- 362 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45666666666666677777766654 56666788888888888888877777766222222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhhcCCChHHhH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEK---KWAQVQNDALKQPSPAQRE-KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK 262 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek---~w~~vq~~alk~PspaQRE-k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalel 262 (347)
-+|+.-......|+.+...+++ +|-..-+..--.-.-+||| ..++..+..|...|-..+.+++.+..+.-.+..
T Consensus 363 --~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~ 440 (859)
T PF01576_consen 363 --SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQD 440 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2333333333344444443433 2322111111111123333 346667777777777777777777666666666
Q ss_pred hhhHHH
Q 019002 263 ELETLN 268 (347)
Q Consensus 263 qLErLn 268 (347)
+|..|.
T Consensus 441 El~dl~ 446 (859)
T PF01576_consen 441 ELEDLT 446 (859)
T ss_dssp ------
T ss_pred hhccch
Confidence 666553
No 206
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=41.39 E-value=2.4e+02 Score=28.95 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHhHhhhcCC-ChHHhHHHHH------HHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 208 LEKKWAQVQNDALKQP-SPAQREKMLN------KQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 208 lek~w~~vq~~alk~P-spaQREk~LE------krLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
|-.=|..++.-+ .+| +++.|..+++ .+++.+-.+|..-+. +++..+.++|.+-.++..||.+-.....
T Consensus 104 l~~ff~a~~~la-~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~ 182 (483)
T PRK07521 104 LSDFQAALQTAA-SSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVSGTA 182 (483)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455555544 455 5577776555 578888888877765 4567799999999999999999888764
No 207
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.14 E-value=2.5e+02 Score=24.66 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w 212 (347)
.++++.+++++..|+.++..+++.-
T Consensus 151 ~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 151 KEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688888888999999988888753
No 208
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.62 E-value=3.6e+02 Score=26.38 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.0
Q ss_pred HHHHHHHhhhc
Q 019002 51 LSRLIRDLRLR 61 (347)
Q Consensus 51 L~rsiqdLRlR 61 (347)
+.+-|..|.+.
T Consensus 82 ~~~Vi~~l~l~ 92 (444)
T TIGR03017 82 AKKVVDKLKLD 92 (444)
T ss_pred HHHHHHHcCCC
Confidence 44556665554
No 209
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.50 E-value=2.1e+02 Score=28.09 Aligned_cols=55 Identities=16% Similarity=0.390 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 106 LQEENAAYEKAISS-------CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 106 lqeenaayekAis~-------c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
++.+.....+.|.+ .+.||+.|-+|.+-.+..|+-+...-...++|+|..+.+|.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34555555555544 56789999999999999999999999999999999997764
No 210
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.12 E-value=1.9e+02 Score=31.41 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=50.9
Q ss_pred HHHHHHHHHhHhhhcCCChHHhHHH------HHHHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 207 ELEKKWAQVQNDALKQPSPAQREKM------LNKQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 207 ~lek~w~~vq~~alk~PspaQREk~------LEkrLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
.|..=|..+|.-+-.--+++.|... |=.+++++-.+|..-+. +++..+.++|.+-.++-.||.+-+...+
T Consensus 108 ~L~~Ff~alq~la~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~ 187 (676)
T PRK05683 108 ALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQASA 187 (676)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444566666544433356777654 45688888888877664 6788999999999999999999887654
No 211
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.09 E-value=5.8e+02 Score=28.64 Aligned_cols=69 Identities=29% Similarity=0.426 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhhhhH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIE-------QLEVKQTQAEGLVSEIHLKE 261 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtE-------qL~~KQaQaE~L~tE~nale 261 (347)
++++..+..|..+|.++..|.++-....+. ....|-+|..+.+ ++...++-++.+..-+.+|+
T Consensus 617 d~lE~~~~qL~E~E~~L~eLq~eL~~~keS----------~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le 686 (769)
T PF05911_consen 617 DQLESLKNQLKESEQKLEELQSELESAKES----------NSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLE 686 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777776654332 2234444444433 33333566666777777777
Q ss_pred HhhhHH
Q 019002 262 KELETL 267 (347)
Q Consensus 262 lqLErL 267 (347)
-+|+.=
T Consensus 687 ~Ele~e 692 (769)
T PF05911_consen 687 EELEKE 692 (769)
T ss_pred HHHHHH
Confidence 776654
No 212
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=40.08 E-value=3.3e+02 Score=25.77 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=70.1
Q ss_pred HHHHhHHHHHHHHHHHHHhh-hccCCCcchhhhh-hhcccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 141 MDEMENNLASELDKVQTAMN-TSKSGKFTESILA-DKAGVDTDALRS---DIAEKLEVKKKELSSMEERVQELEKKWAQV 215 (347)
Q Consensus 141 me~~E~~l~~ele~~~~~~~-~~q~~~s~~s~~~-~~a~~~~e~~~s---~il~~Le~kk~el~~~e~~v~~lek~w~~v 215 (347)
+..+|-.|+.-|-+.+.++- .+|..---.++.+ +.-+... +.++ --+.+++-+|.-+.+.-+...+||...-.=
T Consensus 53 ~~~~EmQlrrvLhdir~t~q~l~q~~~~~g~~~~~~~~~~~~-sv~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~l~~Q 131 (179)
T PF14723_consen 53 PSSTEMQLRRVLHDIRDTLQNLSQYPVMRGSDLNADPYSTQR-SVRELYSCTVQELQQMRRSLNSFREQMMDLELHLMRQ 131 (179)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhccccccccccccccccccch-hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666665532 2333222212211 1111111 3321 135699999999999999999999988887
Q ss_pred hHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 216 QNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 216 q~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
|---.+-=||+-|+.. .|| |+-=+++--|..-||+|||-
T Consensus 132 Qalvy~hMSeeER~Ea--eQL----------QsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 132 QALVYRHMSEEEREEA--EQL----------QSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHhcCCHHHHHHH--HHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 7777888999999832 223 44455666677777777764
No 213
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.03 E-value=3.9e+02 Score=29.96 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019002 194 KKKELSSMEERVQELEKK 211 (347)
Q Consensus 194 kk~el~~~e~~v~~lek~ 211 (347)
.+.|+..+..+|..||.+
T Consensus 671 ~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 214
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.92 E-value=5.1e+02 Score=28.69 Aligned_cols=72 Identities=31% Similarity=0.339 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHH----------HHHHHHHHHHHHHHhhhhhhhhhh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQ----------LHSLIEQLEVKQTQAEGLVSEIHL 259 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkr----------LhSLtEqL~~KQaQaE~L~tE~na 259 (347)
-||+||+|.+.||..+- +=-....++--+|--+-+-+.||+- .|++.-.|-.=-++.|-+.+++.-
T Consensus 388 alEqkkEec~kme~qLk----kAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdk 463 (654)
T KOG4809|consen 388 ALEQKKEECSKMEAQLK----KAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDK 463 (654)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 48899999999887653 2223455566666666665666543 345555554444455544444433
Q ss_pred hHHhhh
Q 019002 260 KEKELE 265 (347)
Q Consensus 260 lelqLE 265 (347)
+--+||
T Consensus 464 kiaele 469 (654)
T KOG4809|consen 464 KIAELE 469 (654)
T ss_pred hhhhcC
Confidence 333333
No 215
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.52 E-value=2.4e+02 Score=24.04 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=13.7
Q ss_pred hhhhhhhhHHhhhHHHHHH
Q 019002 253 LVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 253 L~tE~nalelqLErLn~l~ 271 (347)
...|+--++.|+++|.+.+
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567888888888886543
No 216
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=39.21 E-value=3.5e+02 Score=25.80 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 019002 148 LASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALK 221 (347)
Q Consensus 148 l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk 221 (347)
||..+-.+...++..........++.....++-+.- -.+|+.++.|...+.++|..||.+...+......
T Consensus 36 Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~c----e~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 36 LRAQLRELRAELRNKESQIQELQDSLRTKQLELEVC----ENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHh----HHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 444444444444444443333323332333333322 2588888888888988998888888776655433
No 217
>PRK00295 hypothetical protein; Provisional
Probab=39.21 E-value=1.9e+02 Score=22.65 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019002 200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSE 256 (347)
Q Consensus 200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE 256 (347)
+||+.+.+||-+-+. +|.-+..|=+.+++-|.++..|...
T Consensus 2 ~~e~Ri~~LE~kla~-----------------qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 2 SLEERVTELESRQAF-----------------QDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred CHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666555 4444555555555556555444433
No 218
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.08 E-value=3.3e+02 Score=25.45 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=48.8
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHH
Q 019002 39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAIS 118 (347)
Q Consensus 39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis 118 (347)
-+|..|...=..|..-|..++-+.+|+. .++....--.| ..|=-++..-+..+.+.++.-.+++.+...|.+=+.
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~--~~~~~~ye~el---~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e 92 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEV--SRIKEMYEEEL---RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccC--cccccchhhHH---HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence 4677888888889999999998854332 11111111111 223344444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 019002 119 SCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQT 157 (347)
Q Consensus 119 ~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~ 157 (347)
........=-.+...|+..+.+....-.+|..++..++.
T Consensus 93 ~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 93 EELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 222222222233444444444444444444444444444
No 219
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.04 E-value=2.6e+02 Score=24.23 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019002 188 AEKLEVKKKELSSMEERVQELEK 210 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek 210 (347)
..=+...++-|.+|.+..+.+..
T Consensus 125 ~~l~~ql~~hl~s~~~n~~~l~~ 147 (160)
T PF13094_consen 125 LPLLKQLNKHLESMQNNLQQLKG 147 (160)
T ss_pred HHHHHHHHHHHHHHHccHHHHHH
Confidence 34444555666666666664443
No 220
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.96 E-value=3.1e+02 Score=25.21 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhh
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRK------------LKEMDEMENNLASELDKVQTAMNTSKSGKFTESIL 172 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~------------l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~ 172 (347)
...+.+..|.|.|.+.-..+.+-..+...+... +.+++..=.+..++|..++..+..-.+...+-...
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~ 114 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTR 114 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred hhhcccchhhhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHH----HHHHhHhhhcCCChHHhHHHHHHHHHHH
Q 019002 173 ADKAGVDTDALRSDIAEKLEVKKKELSSM---------EERVQELEKK----WAQVQNDALKQPSPAQREKMLNKQLHSL 239 (347)
Q Consensus 173 ~~~a~~~~e~~~s~il~~Le~kk~el~~~---------e~~v~~lek~----w~~vq~~alk~PspaQREk~LEkrLhSL 239 (347)
...+...-...+ ..+++....|... +.....|+-+ |..+.....-.=|-..|.-.+..|..-+
T Consensus 115 p~~aq~~l~~~~----~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~ 190 (240)
T PF12795_consen 115 PERAQQQLSEAR----QRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLL 190 (240)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 240 IEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 240 tEqL~~KQaQaE~L~tE~nalelq 263 (347)
..++..-+..+..|-+-+|.++..
T Consensus 191 ~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 191 KARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 221
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.83 E-value=2.8e+02 Score=24.59 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~ 211 (347)
++|++++.|+..|.++...|+|+
T Consensus 168 ~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 168 KELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666554
No 222
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.56 E-value=3e+02 Score=27.21 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w 212 (347)
+++.+++++..++.+++.++..+
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 223
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=38.19 E-value=4e+02 Score=28.55 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=52.1
Q ss_pred HHHHHHHHHhHhhhcCCChHHhHHHHH------HHHHHHHHHHHHHHHHh----hhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 207 ELEKKWAQVQNDALKQPSPAQREKMLN------KQLHSLIEQLEVKQTQA----EGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 207 ~lek~w~~vq~~alk~PspaQREk~LE------krLhSLtEqL~~KQaQa----E~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
.|..=|..+|.-+..--+++.|+-.|+ .+++++-.+|..-+..+ ...+.++|.+-.++..||.+-+...
T Consensus 108 ~l~~ff~alq~la~~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~~ 186 (624)
T PRK12714 108 LWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSSA 186 (624)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466667777765554446677776554 68888888888777655 4899999999999999999887653
No 224
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.09 E-value=35 Score=36.33 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
.++.+...|+..++..+..||++-..
T Consensus 510 ~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 510 KEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777777777777776554
No 225
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.91 E-value=3.4e+02 Score=27.58 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 135 RRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 135 ~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
...+-+++..-.++..++++++.+.+......- . ..+++-+ ....+.++..+.|+++..+|.++..+|.+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~---~-~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIG---K-AKGQKKD---KIEEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777777655443321110 0 1112211 012344666777777777766666655543
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.89 E-value=3.7e+02 Score=25.68 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
+...+++|...+.+++.||..+..++.+ |+ + ..+....++....-|..++|.++.+
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~e----------------r~----~----~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESE----------------RN----K----RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH----H----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888877777643321 22 2 2334455666777888888888777
Q ss_pred ---hhHHHHHH
Q 019002 264 ---LETLNGLR 271 (347)
Q Consensus 264 ---LErLn~l~ 271 (347)
|+.|..+.
T Consensus 104 ~lgl~~Lp~l~ 114 (230)
T PF10146_consen 104 YLGLEPLPSLE 114 (230)
T ss_pred HcCCCCCCccc
Confidence 56665444
No 227
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.47 E-value=5.7e+02 Score=27.76 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDAL 220 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~al 220 (347)
.+...-..++..+++.+.+|.++|..-+....
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 35555667778888999999999987655443
No 228
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.44 E-value=4.4e+02 Score=26.40 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 130 EADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 130 ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
..+.+..+|++|...+ |+....++.
T Consensus 56 ~ld~~~~kl~~Ms~~q--l~~~~~k~~ 80 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQ--LRANIAKAE 80 (301)
T ss_pred hhHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 3456666777776543 344444433
No 229
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=37.42 E-value=2e+02 Score=31.13 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=65.1
Q ss_pred HHHHhhhccCCCcch-hhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhcCCChHHhHH
Q 019002 155 VQTAMNTSKSGKFTE-SILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQN---DALKQPSPAQREK 230 (347)
Q Consensus 155 ~~~~~~~~q~~~s~~-s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~---~alk~PspaQREk 230 (347)
++...+++--+.+.- -++...-|.+.+.. ++|++.+++++.-|+.++.|-+-....++ +..++|-|.-.|.
T Consensus 380 a~~~v~a~~iGs~i~~~~t~~~vG~dpe~~-----~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~ 454 (543)
T COG1315 380 AFEDVYAREIGSDIGSLKTAIDVGMDPEIV-----ERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKES 454 (543)
T ss_pred hhHhhhHhhcCCcccccceeeEeccCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHH
Confidence 334444444333333 34555566666654 89999999999999999999999999888 7888998887774
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
.+..=..+ .=.+.+.+.-.+.+|+.++.-.
T Consensus 455 ~~~~vnn~-----------ki~l~~~ieki~~~l~~lqe~l 484 (543)
T COG1315 455 LLTAVNNT-----------KITLRNSIEKIKAELEGLQEEL 484 (543)
T ss_pred HHHhhhhh-----------hccHHHHHHHHHHHHHHHHHHH
Confidence 33332222 2234444555566666665443
No 230
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.15 E-value=1.2e+02 Score=33.57 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Q 019002 94 STREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASE 151 (347)
Q Consensus 94 at~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~e 151 (347)
--.-|.+.|.+.|+.|++.|..-|..|++-|-.|++|...|.. ++|+++..+++-
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~---~ieqaq~~~~El 147 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG---EIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh---HHHHHHHHHHHH
Confidence 3345677888899999999999999999999999998877764 556666665543
No 231
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.15 E-value=2.2e+02 Score=25.96 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=28.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002 179 DTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQND 218 (347)
Q Consensus 179 ~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~ 218 (347)
+++-.+..+-+++...+.+.+.++.++++|+.++..++.+
T Consensus 117 ~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 117 QAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345556677777888888888888888888886543
No 232
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=36.91 E-value=1e+02 Score=28.46 Aligned_cols=46 Identities=33% Similarity=0.478 Sum_probs=39.2
Q ss_pred HHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019002 97 EQTQLREVT-----LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMD 142 (347)
Q Consensus 97 eQaq~Re~t-----lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme 142 (347)
-|--+=||. |+-|-.|||||.+...++........|.|..|-.+|+
T Consensus 33 LqfAlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~ 83 (153)
T PF15175_consen 33 LQFALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIE 83 (153)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555553 6778999999999999999999999999999999886
No 233
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.83 E-value=4.6e+02 Score=26.50 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=18.8
Q ss_pred hccccchHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019002 89 LSSHSSTREQTQLREVTLQEENAAYEKAISSCE 121 (347)
Q Consensus 89 lnaHSat~eQaq~Re~tlqeenaayekAis~c~ 121 (347)
|..--.-|.|--+.--+|++...+++|=+..+.
T Consensus 18 Le~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 18 LEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334455666666677777666666554444
No 234
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.30 E-value=4.8e+02 Score=26.53 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 234 KQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 234 krLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
-+++.|--||..--.|+|.|..|+..+.-+|||.-
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444454445588999999999999999863
No 235
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.23 E-value=12 Score=39.74 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKL 138 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l 138 (347)
+..|++=|..+++++.+...+++.|...+
T Consensus 365 le~~k~qi~eLe~~l~~~~~~~~~l~~e~ 393 (713)
T PF05622_consen 365 LEEYKKQIQELEQKLSEESRRADKLEFEN 393 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665555544333
No 236
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=36.15 E-value=3e+02 Score=26.12 Aligned_cols=96 Identities=27% Similarity=0.304 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh-----------hhccCCCcchhhhhh
Q 019002 106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM-----------NTSKSGKFTESILAD 174 (347)
Q Consensus 106 lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~-----------~~~q~~~s~~s~~~~ 174 (347)
|..+...|+--|...+...+.|-.|+..|+..+.++...+..-+.+|-++-..- ........+...+..
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~ 159 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPPPPPHHPVAEPDEGDEDENDEENSEY 159 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS--GGGS------------------E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCccccccccccc
Q ss_pred hcccchhhh---------------hhhHHHHHHHHHHHHHHH
Q 019002 175 KAGVDTDAL---------------RSDIAEKLEVKKKELSSM 201 (347)
Q Consensus 175 ~a~~~~e~~---------------~s~il~~Le~kk~el~~~ 201 (347)
.+-+.++.. +..+-++|...+.||+.+
T Consensus 160 s~dl~~~~~~~~~sEeeR~t~~EKnk~lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 160 SADLETDGDMKDRSEEERVTYAEKNKRLQEQLKELKSELEQL 201 (246)
T ss_dssp EEE---T-T--TCGGGC---HHHH-HHHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 237
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=35.93 E-value=2.6e+02 Score=29.82 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhHhhhcCCChHHhHHHHHH------HHHHHHHHHHHHH----HHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 206 QELEKKWAQVQNDALKQPSPAQREKMLNK------QLHSLIEQLEVKQ----TQAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 206 ~~lek~w~~vq~~alk~PspaQREk~LEk------rLhSLtEqL~~KQ----aQaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
..|.-=|..+|+-+..--.++.|+..|++ +++...++|..=+ +++...+.++|.+-.++..||.+-++..
T Consensus 111 ~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~ 190 (552)
T COG1256 111 TLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKVK 190 (552)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566788888877666667888877764 5555666665433 4556788999999999999999999885
Q ss_pred cCCcchhh
Q 019002 276 GSNVEEDT 283 (347)
Q Consensus 276 s~n~e~d~ 283 (347)
......++
T Consensus 191 ~~g~~~Nd 198 (552)
T COG1256 191 AAGNDPND 198 (552)
T ss_pred cCCCCchh
Confidence 43333444
No 238
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.87 E-value=6.3e+02 Score=27.78 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=56.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch
Q 019002 102 REVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE 169 (347)
Q Consensus 102 Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~ 169 (347)
+-.+||-+---|..+.++.+++-+..-.....|...+++-|.--+.|+.+.+.+.+.++.. +.|++
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~ 332 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ--GISGE 332 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHH
Confidence 3456888888899999999999999999999999999888888889999999999888877 66666
No 239
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=35.86 E-value=3.4e+02 Score=24.68 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019002 94 STREQTQLREVTLQEENAAYEKAISSCESRIQEK 127 (347)
Q Consensus 94 at~eQaq~Re~tlqeenaayekAis~c~~~i~ek 127 (347)
.-++.++.....+..|...+.+-+...++++..+
T Consensus 57 eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~r 90 (201)
T PF12072_consen 57 EAKEEAQKLRQELERELKERRKELQRLEKRLQQR 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666666555555555544
No 240
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.73 E-value=3.6e+02 Score=24.94 Aligned_cols=68 Identities=31% Similarity=0.369 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
++..+..++..+|..+.+||++-.. |..+...+-+.-.++...+.++.++.+++..+++.+.-
T Consensus 118 ~~~~~~~~~~~~e~~i~~Le~ki~e-----------------l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 118 KIEEKEAELKELESEIKELEMKILE-----------------LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666666665443 44444455555556666677777777777776666665
Q ss_pred HHhhh
Q 019002 270 LRRRI 274 (347)
Q Consensus 270 l~Rn~ 274 (347)
.+..+
T Consensus 181 ~F~~~ 185 (190)
T PF05266_consen 181 EFQSV 185 (190)
T ss_pred HHHHH
Confidence 55444
No 241
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.69 E-value=4e+02 Score=25.41 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh------hhHHHHHHHHHH
Q 019002 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR------SDIAEKLEVKKK 196 (347)
Q Consensus 123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~------s~il~~Le~kk~ 196 (347)
.=+.=..|-..|+..+.-||+.-..|..++.++...+...|. +.-.++++. ...+..|++.+.
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq-----------al~~aK~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ-----------ALQKAKALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555667777777777777777777777766664441 111111111 012344555544
Q ss_pred HH----HHHHHHHHHHHHHHHHHhHhhhc
Q 019002 197 EL----SSMEERVQELEKKWAQVQNDALK 221 (347)
Q Consensus 197 el----~~~e~~v~~lek~w~~vq~~alk 221 (347)
-| ..+|..-|.|..+|.-+|++.-|
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 43 36777788888888888887655
No 242
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.62 E-value=3.9e+02 Score=25.25 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLKEMD 142 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~eme 142 (347)
.+.+.+--+....++++-..+.+.|+..+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 155 (301)
T PF14362_consen 123 DAIQAQVQASFDAQIARLDAEIAALQAEIDQLE 155 (301)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333333445555555555555554444433
No 243
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.48 E-value=4.6e+02 Score=28.38 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHhhhcCC-ChHHhHHHHH------HHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 207 ELEKKWAQVQNDALKQP-SPAQREKMLN------KQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 207 ~lek~w~~vq~~alk~P-spaQREk~LE------krLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
.|..=|..+|.-+ .+| +++.|...|+ .+++++-.+|..-+. +++..+.++|.+-.++..||.+-+..
T Consensus 109 ~L~~Ff~alq~la-~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 109 AITSFFTGLQNVA-NNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777777644 466 4677776655 588888888877664 56788999999999999999999887
No 244
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.47 E-value=2.9e+02 Score=28.62 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=51.7
Q ss_pred HHHHHHHHHhHhhhcCC-ChHHhHHHH------HHHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 207 ELEKKWAQVQNDALKQP-SPAQREKML------NKQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 207 ~lek~w~~vq~~alk~P-spaQREk~L------EkrLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
.|..=|..+|.-+- +| +++.|.-.+ =.+++.+..+|..-+. +++..+.++|.+-.++-.||..-+...
T Consensus 109 ~l~~ff~a~~~ls~-~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~ 187 (547)
T PRK08147 109 TMQDFFTSLQTLVS-NAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRLT 187 (547)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455777765444 55 567777654 4688888888877765 457789999999999999999998876
Q ss_pred c
Q 019002 276 G 276 (347)
Q Consensus 276 s 276 (347)
+
T Consensus 188 ~ 188 (547)
T PRK08147 188 G 188 (547)
T ss_pred c
Confidence 4
No 245
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.45 E-value=2.6e+02 Score=26.91 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=49.3
Q ss_pred HHhHhhhcCCChHHh-----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 214 QVQNDALKQPSPAQR-----EKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 214 ~vq~~alk~PspaQR-----Ek~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
+=+..+++.+.-.+- ...+...+..|.+.|..|+.-+|+..++..++.+|.|.++.-|=++.-
T Consensus 133 ~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 133 MKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLE 200 (216)
T ss_pred HHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 334555555554444 356777888899999999999999999999999999999988887753
No 246
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.09 E-value=3.6e+02 Score=24.81 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhcCCChHHhHHHHHHHH-----------HHHHHHHHHHHHHhh
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQND--ALKQPSPAQREKMLNKQL-----------HSLIEQLEVKQTQAE 251 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~--alk~PspaQREk~LEkrL-----------hSLtEqL~~KQaQaE 251 (347)
+.+-.+++..++-|..-...-..+.+.|..+... .|-.|... |+..| ...+.+|...-.+++
T Consensus 80 ~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~-----L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~ 154 (296)
T PF13949_consen 80 ASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEE-----LEASLPSSSPSDSPQVSEVIRQLRELLNKLE 154 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHH-----HHHHS--B---SSGSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhh-----HHhhCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3455667776666666666666666666666554 34333211 11111 223444444455556
Q ss_pred hhhhhhhhhHHhhhH
Q 019002 252 GLVSEIHLKEKELET 266 (347)
Q Consensus 252 ~L~tE~nalelqLEr 266 (347)
.+..||+.+..+|..
T Consensus 155 ~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 155 ELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666554
No 247
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.01 E-value=1.7e+02 Score=22.63 Aligned_cols=51 Identities=29% Similarity=0.407 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHH
Q 019002 200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETL 267 (347)
Q Consensus 200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErL 267 (347)
.||+.+.+||-+-+. +|.-+..|=+-++.-|.+++.|...+..+..+|..+
T Consensus 1 ~le~Ri~~LE~~la~-----------------qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 1 MLEERIEELEIKLAF-----------------QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888877 566667777777777777776666555555555443
No 248
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=34.71 E-value=2.5e+02 Score=25.14 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
+|+..+.+++.+...++.|.+.|-.
T Consensus 61 ~l~~l~~~l~~l~~eL~~Lr~~~l~ 85 (126)
T PF07028_consen 61 ELKELKQELDVLSKELQALRKEYLE 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888899999999999999864
No 249
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=34.51 E-value=1.2e+02 Score=31.47 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=27.4
Q ss_pred cCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 019002 221 KQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELE 265 (347)
Q Consensus 221 k~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLE 265 (347)
..|.+.+-|++|.+++..|..+|.+++............+|+-+|
T Consensus 137 Ye~~~~~~e~el~~~veel~~~l~~~~~~~~~~~eq~almEKsye 181 (410)
T TIGR03779 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYE 181 (410)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhHH
Confidence 555556667778888888887777777544444444444444444
No 250
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.35 E-value=2.3e+02 Score=22.29 Aligned_cols=71 Identities=32% Similarity=0.433 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
..++.++.+..+..+...|..|++-.... +-.+. .+..+-.+|+.++. +...++.++...-..|++
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~----l~~~~---~~~~~~~~l~~~~~-------~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAELQKLHEEL----LTPPD---ADKELREKLERLID-------DIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCc---hhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999887763 33333 33345556665554 456677777777777777
Q ss_pred HHHHH
Q 019002 267 LNGLR 271 (347)
Q Consensus 267 Ln~l~ 271 (347)
.+...
T Consensus 72 ~~~~~ 76 (117)
T smart00503 72 ENLEN 76 (117)
T ss_pred hHHhh
Confidence 66433
No 251
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=34.31 E-value=5e+02 Score=26.12 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHH-HHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 233 NKQLHSLIEQLE-VKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 233 EkrLhSLtEqL~-~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
+.|+.++.++.. .-+.++..+..++...+.+|+.++....++
T Consensus 275 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 275 NSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444443332 334445555556666666666665554444
No 252
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.16 E-value=3.1e+02 Score=23.79 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhhhhHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGL-------VSEIHLKEK 262 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L-------~tE~nalel 262 (347)
.|..+..|+..+...+..|++.=....++-.+--.....=+...+++..|-.++...+...+++ +-++..|+.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444555566666666655555444444333322222222233344444444444444333332 223445666
Q ss_pred hhhHHHHHHhh
Q 019002 263 ELETLNGLRRR 273 (347)
Q Consensus 263 qLErLn~l~Rn 273 (347)
+++-+...||.
T Consensus 104 Dv~DlK~myr~ 114 (120)
T PF12325_consen 104 DVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHH
Confidence 66666666664
No 253
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.84 E-value=1.6e+02 Score=26.08 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQV 215 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~v 215 (347)
++++..|+||+.-|..+..|-|.=..+
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777666666665544443
No 254
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.90 E-value=1.9e+02 Score=24.04 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=27.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 019002 176 AGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQ 222 (347)
Q Consensus 176 a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~ 222 (347)
..|+.+.+ ..|--.+.+-+++++.|+.+++.+...=..+.|+.+|.
T Consensus 60 ~LPt~~dv-~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~lk~ 105 (106)
T PF10805_consen 60 HLPTRDDV-HDLQLELAELRGELKELSARLQGVSHQLDLLLENELKK 105 (106)
T ss_pred hCCCHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444433 23344666777777777777777666666666666653
No 255
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.84 E-value=3.9e+02 Score=27.40 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhh----h
Q 019002 108 EENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDA----L 183 (347)
Q Consensus 108 eenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~----~ 183 (347)
.|.+.|.|-.+...+|.+-|-.-+--|...|+..+.-...|+.-.|-++-.+.+.... ++-..--|-++.. +
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere----~eLlaa~gc~a~~e~gte 84 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERE----LELLAACGCDAKIEFGTE 84 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh----hHHHHhcCCCchhhccch
Confidence 4678899999999999999988888888777777666666776666666555443221 2222222333332 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 184 RSDIAEKLEVKKKELSSMEERVQELE 209 (347)
Q Consensus 184 ~s~il~~Le~kk~el~~~e~~v~~le 209 (347)
++++..++++-|.|--.+-..++.|-
T Consensus 85 rqdLaa~i~etkeeNlkLrTd~eaL~ 110 (389)
T KOG4687|consen 85 RQDLAADIEETKEENLKLRTDREALL 110 (389)
T ss_pred hhHHHHHHHHHHHHhHhhhHHHHHHH
Confidence 57777778777777665555555543
No 256
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=32.58 E-value=15 Score=40.37 Aligned_cols=176 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhh---cc
Q 019002 105 TLQEENAAYEKAISSCESRIQEKI----QEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADK---AG 177 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~----~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~---a~ 177 (347)
.|-+.+..++.+|+..+.+-..-+ ..++.++..-..++..-..|..+++++...++.-+..+... +..-+ +.
T Consensus 110 ~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~-Ek~~K~lE~q 188 (859)
T PF01576_consen 110 DLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEA-EKKRKQLEAQ 188 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhHHhhHHHH
Confidence 355678889999998877654443 44566666667777778888888888888887766554444 11110 00
Q ss_pred --------cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHh-HHHHHHHHHHHHHHHHHHHH
Q 019002 178 --------VDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQR-EKMLNKQLHSLIEQLEVKQT 248 (347)
Q Consensus 178 --------~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQR-Ek~LEkrLhSLtEqL~~KQa 248 (347)
-+.+...+++-........|++.+...+.++|..-..+ +| .+.|+.+|.-+-.+|-.-..
T Consensus 189 L~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l-----------~r~k~~L~~qLeelk~~leeEtr 257 (859)
T PF01576_consen 189 LNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQL-----------QREKSSLESQLEELKRQLEEETR 257 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHhHhh
Confidence 01111111111122222223333444444444333332 22 22356666666666655555
Q ss_pred HhhhhhhhhhhhHHhhhHHHH-----------HHhhhhcCCcchhhhhccccccc
Q 019002 249 QAEGLVSEIHLKEKELETLNG-----------LRRRIEGSNVEEDTARNRLRRVT 292 (347)
Q Consensus 249 QaE~L~tE~nalelqLErLn~-----------l~Rn~~s~n~e~d~aRnRf~r~~ 292 (347)
.-..|......++.+++.|.. +.|.+...|.+....|.+|-...
T Consensus 258 ~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~ 312 (859)
T PF01576_consen 258 AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA 312 (859)
T ss_dssp -------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555555555555555555532 22333345556666666666543
No 257
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.53 E-value=1.5e+02 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLKE 140 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~e 140 (347)
...++..|..|+.++.........++.+|++
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 258
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.08 E-value=5.5e+02 Score=27.63 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019002 232 LNKQLHSLIEQLEVKQTQ 249 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQ 249 (347)
|+.||+-|+=.|-++|.-
T Consensus 440 LqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 440 LQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHhHheehhhhhhh
Confidence 667888888888777653
No 259
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.93 E-value=5.8e+02 Score=26.19 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=36.6
Q ss_pred hhhhhhhhhhhHHhhhHHHHHHhhhhcCCcchhhhhccccccccCCC-CCCcchhhhcccCCcccc
Q 019002 250 AEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRG-SASTDYLVDDSQKLPYHT 314 (347)
Q Consensus 250 aE~L~tE~nalelqLErLn~l~Rn~~s~n~e~d~aRnRf~r~~s~~~-s~~sD~~v~~~~krpySs 314 (347)
+..+..|.-+..-=|.+=-.++|.+-.... ...+|..+-+.++++- +.++-.+|..++...+|.
T Consensus 199 ~~~~~~el~~v~~~l~~~~~lrr~l~d~~~-~~~~k~~l~~~l~~~~~~~~~~~~~~~~~~~rws~ 263 (445)
T PRK13428 199 LTTLADELVSVAKLLDREPVLTKHLTEPAE-DAAPKIRLVERLFSGKVGAPTLEVLRTAVSQRWSA 263 (445)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHcCCCCC-ChhhHHHHHHHHhCcCCCHHHHHHHHHHHhCccCc
Confidence 446667776666666665556665544333 4556666666666531 334444466666666665
No 260
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.73 E-value=3.5e+02 Score=31.57 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHH----HHHHHHHhhhhhhh
Q 019002 181 DALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQ----LEVKQTQAEGLVSE 256 (347)
Q Consensus 181 e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEq----L~~KQaQaE~L~tE 256 (347)
|.+.-....+++.++.++..+|++++..+|.-+.++. .-.+.+|-|++.++ ..++++.+|.+.++
T Consensus 635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~-----------~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~ 703 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQK-----------KLKLLKRERTKLNSELKSYQQRKERIENLVVD 703 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHhhhHH
Q 019002 257 IHLKEKELETL 267 (347)
Q Consensus 257 ~nalelqLErL 267 (347)
++..+.++...
T Consensus 704 l~~qkee~~~~ 714 (1072)
T KOG0979|consen 704 LDRQEEEYAAS 714 (1072)
T ss_pred HHHHHHHHHHH
No 261
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.58 E-value=2.7e+02 Score=22.32 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=45.8
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 133 SLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 133 ~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
..-..+-+++.--..+..+++.++...+.-.... ....++|.+.+.+ ..+..+.|.+++.+|.++..+|.++
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I----~~~~~~~~~~~~l----~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEI----GKLKKAGEDAEEL----KAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCHTTCCTHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHhhCcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666667777777765544332111 1122333455555 4788888999999999998888876
Q ss_pred HH
Q 019002 213 AQ 214 (347)
Q Consensus 213 ~~ 214 (347)
..
T Consensus 98 ~~ 99 (108)
T PF02403_consen 98 NE 99 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 262
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=31.51 E-value=2.5e+02 Score=21.91 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=46.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhcC----CCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHH
Q 019002 38 QKYVRELDQKAASLSRLIRDLRLRL----PPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAY 113 (347)
Q Consensus 38 ~~~v~eLd~kAasL~rsiqdLRlRl----PPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaay 113 (347)
...+.+||.++.++.+.+...-... ++| +.+.+ .+...+.+=+..|
T Consensus 21 l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~---~~~~~~~~I~~~~ 70 (105)
T PF12998_consen 21 LTLIRELDAKSQDLLEELDQQIQKFIKNHGSP---------------------------SLSPE---KRRELLKEIQEEY 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS-----------------------------S-HH---HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc---------------------------cCChH---HHHHHHHHHHHHH
Confidence 3468899999888887776554322 111 23333 4445555666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019002 114 EKAISSCESRIQEKIQEADSLRRKLKEMD 142 (347)
Q Consensus 114 ekAis~c~~~i~ek~~ea~~L~~~l~eme 142 (347)
++++.-+..|+.--.+=.+.+.+.++-+|
T Consensus 71 ~~~~~l~deKv~lA~~~~d~v~~hi~rLD 99 (105)
T PF12998_consen 71 ERALELSDEKVALAQQAYDLVDRHIRRLD 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777765555556655555544
No 263
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=31.47 E-value=4.3e+02 Score=24.57 Aligned_cols=6 Identities=33% Similarity=0.152 Sum_probs=2.6
Q ss_pred hhHhhh
Q 019002 6 AWAADV 11 (347)
Q Consensus 6 AWAaDV 11 (347)
.|++.+
T Consensus 18 ~~~~~~ 23 (334)
T TIGR00998 18 AYAIYW 23 (334)
T ss_pred HHHHHH
Confidence 444444
No 264
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=31.44 E-value=4.7e+02 Score=24.97 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 019002 116 AISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKV 155 (347)
Q Consensus 116 Ais~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~ 155 (347)
-+--|++.++.+..|++.|+.++-.++.-=..|+..+..+
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 4668999999999999999999999998888888888887
No 265
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=31.28 E-value=2.6e+02 Score=21.90 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
..+|...|+++..+.++++.+.++-..++
T Consensus 63 ~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 63 VKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999988865543
No 266
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.13 E-value=2.9e+02 Score=29.80 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=50.4
Q ss_pred HHHHHHHHHhHhhhcCCChHHhHHHHH------HHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 207 ELEKKWAQVQNDALKQPSPAQREKMLN------KQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 207 ~lek~w~~vq~~alk~PspaQREk~LE------krLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
.|.+=|..+|.-+-.--+++.|.-.|+ .+++++-.+|..-+. +++..+.++|.+-.++..||.+-....
T Consensus 111 ~L~~Ff~alq~la~~P~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~~~ 189 (626)
T PRK08871 111 NLNEWFDAVKTLADSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMRTP 189 (626)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666666655444344677876554 688888888877654 567889999999999999998887654
No 267
>PF05554 Novirhabdo_Nv: Viral hemorrhagic septicemia virus non-virion protein; InterPro: IPR008720 This family consists of several viral hemorrhagic septicemia virus non-virion (Nv) proteins. The NV protein is a nonstructural protein absent from mature virions although it is present in infected cells. The function of this protein is unknown [].
Probab=31.06 E-value=29 Score=30.37 Aligned_cols=26 Identities=46% Similarity=0.667 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHhhhcCCCcccccccchhhhh
Q 019002 45 DQKAASLSRLIRDLRLRLPPPDISQRLPHLHAH 77 (347)
Q Consensus 45 d~kAasL~rsiqdLRlRlPPp~isQrLPhLhAh 77 (347)
|=--..|.|-+.|||. +-||||||+-
T Consensus 46 ~ffettlpril~dlra-------strlpylhvl 71 (122)
T PF05554_consen 46 DFFETTLPRILDDLRA-------STRLPYLHVL 71 (122)
T ss_pred hhhhhhhHHHHHHHhh-------cccCchhhhh
Confidence 3334679999999995 6799999974
No 268
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.96 E-value=1.5e+02 Score=25.17 Aligned_cols=47 Identities=30% Similarity=0.287 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
..||.++..|.+++.+=..++..|..|=+.|+++.+.|.........
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999998888655544443
No 269
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.95 E-value=2.7e+02 Score=22.01 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 019002 201 MEERVQELEKKWAQ 214 (347)
Q Consensus 201 ~e~~v~~lek~w~~ 214 (347)
||..+.+||-+-+.
T Consensus 6 ~e~Ri~~LE~~laf 19 (72)
T PRK02793 6 LEARLAELESRLAF 19 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666655554
No 270
>PF15294 Leu_zip: Leucine zipper
Probab=30.86 E-value=4.5e+02 Score=26.15 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDE 143 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~ 143 (347)
..||+||.....-+...+...-.-+.|=..|...|+++..
T Consensus 135 ~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 135 DRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999888877777777776666677777777776655
No 271
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.82 E-value=2.9e+02 Score=29.17 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 019002 186 DIAEKLEVKKKELSSMEERVQ 206 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~ 206 (347)
.+.++|++||+|+..+...|+
T Consensus 360 ~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777766666554
No 272
>PRK10722 hypothetical protein; Provisional
Probab=30.52 E-value=1.3e+02 Score=29.64 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCChHHhHHHHHH----------HHHHHHHHHHHHHHHhhhhhhhhh---hh----HHhhhHHHHHHhhhh
Q 019002 222 QPSPAQREKMLNK----------QLHSLIEQLEVKQTQAEGLVSEIH---LK----EKELETLNGLRRRIE 275 (347)
Q Consensus 222 ~PspaQREk~LEk----------rLhSLtEqL~~KQaQaE~L~tE~n---al----elqLErLn~l~Rn~~ 275 (347)
.|||+-|-+.+++ .||-|++=+..+|.+.=.|..|+. -+ +.+|++|.++.+.++
T Consensus 119 ~~t~~err~~l~rl~~~~~~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq 189 (247)
T PRK10722 119 KITPAERRQIVERLNAYSLQIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQ 189 (247)
T ss_pred CCChHHHHHHHHHHhhcccccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4556666666654 466677777777777777777776 55 666777666665554
No 273
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.44 E-value=4.4e+02 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKE 140 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~e 140 (347)
+.+++.+.++.|...+.+|...+..-++
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~ 100 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQ 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888877655444
No 274
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.41 E-value=2.9e+02 Score=24.88 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMD 142 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme 142 (347)
..|+.....|+|+|-..++.|++..+.++.+...+++.-
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888887777666543
No 275
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.38 E-value=2e+02 Score=21.99 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE 229 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE 229 (347)
.......++..++.++..++.+|..++.+-.+--+|..=|
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe 64 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3445556666666667777777776665554444454433
No 276
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.06 E-value=4.2e+02 Score=23.99 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=4.7
Q ss_pred cCCcccc
Q 019002 308 QKLPYHT 314 (347)
Q Consensus 308 ~krpySs 314 (347)
+.+||.+
T Consensus 217 v~Lpy~i 223 (302)
T PF10186_consen 217 VPLPYPI 223 (302)
T ss_pred CCCCCCc
Confidence 3688865
No 277
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=29.73 E-value=3.9e+02 Score=23.49 Aligned_cols=51 Identities=35% Similarity=0.408 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---------HhhhcCCChHHhHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQ---------NDALKQPSPAQREKMLNKQLHSLIE 241 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq---------~~alk~PspaQREk~LEkrLhSLtE 241 (347)
.|-....||.-+. +-+.||.+-+.|+ .+..|+|...+||+.|=.++..+++
T Consensus 58 ~LvrreseL~~~~-~~~~Le~~~~~L~~ELr~l~~~~d~~KT~~d~~rE~~Ll~elv~lV~ 117 (142)
T PF12130_consen 58 ALVRRESELMYME-KEQELEDRQARLEQELRELLAKPDWEKTEEDKQREEELLQELVELVN 117 (142)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhccccccChhhHHHHHHHHHHHHHHHH
Confidence 3444445555554 3456676666666 3468999999999888777766554
No 278
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=29.63 E-value=3e+02 Score=22.15 Aligned_cols=57 Identities=28% Similarity=0.480 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHH-hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQ-REKMLNKQLHSLIEQLEVKQTQAEGL 253 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQ-REk~LEkrLhSLtEqL~~KQaQaE~L 253 (347)
|.....|+..|--..++|.-...++ +||+.. .-++|+..|..|+..|..|=.|+..|
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~------d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQM------DPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444443 345433 33589999999999999999998766
No 279
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=29.56 E-value=7.9e+02 Score=26.99 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=53.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch
Q 019002 99 TQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE 169 (347)
Q Consensus 99 aq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~ 169 (347)
..-|--+|+.+-.-|+.+.+..++|-++.---...|..+..+-|+-=+.|++..|.+...+... ++|.+
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq--~Is~e 368 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ--GISTE 368 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--CCCHH
Confidence 3445578999999999999999999999888888888887777777777888888777666543 34444
No 280
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.56 E-value=5.5e+02 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 226 AQREKMLNKQLHSLIE---QLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 226 aQREk~LEkrLhSLtE---qL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.++++.|+.++..+-. .+..++.+.+.|..|....+..++.+-
T Consensus 317 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll 362 (444)
T TIGR03017 317 KQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAM 362 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666554433 344455555555555555444444443
No 281
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.55 E-value=3.9e+02 Score=23.45 Aligned_cols=45 Identities=18% Similarity=0.402 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 118 SSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 118 s~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
..|+.++.+--++...+...+..+..--..|-.++|.++..+...
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666556555555566666666666555443
No 282
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.38 E-value=4.1e+02 Score=27.25 Aligned_cols=24 Identities=8% Similarity=0.375 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 115 KAISSCESRIQEKIQEADSLRRKL 138 (347)
Q Consensus 115 kAis~c~~~i~ek~~ea~~L~~~l 138 (347)
+.|...+++|...+.++...+.++
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea 51 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRL 51 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444333
No 283
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.35 E-value=2.1e+02 Score=27.91 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
+.|+.++.+|..+++++..|+++......+ -..|+.+.......|..-+.-..+|.+|+.-=..+++.+.
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e----------~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEYEEAQKE----------KQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 355555666666666666665555443221 2346666766777777777777888888777777777777
Q ss_pred HHHhhhh
Q 019002 269 GLRRRIE 275 (347)
Q Consensus 269 ~l~Rn~~ 275 (347)
....++-
T Consensus 305 ~~~~~l~ 311 (344)
T PF12777_consen 305 EQLKNLV 311 (344)
T ss_dssp HHHHHHH
T ss_pred HHhcccH
Confidence 6666654
No 284
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.31 E-value=3.6e+02 Score=22.99 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=36.4
Q ss_pred hhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019002 87 QQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEM 141 (347)
Q Consensus 87 lqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~em 141 (347)
.+-.-....++.....--++..++....+.+..++.++.+..+|+..+..+...+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666667777777777777777777777777777776666555443
No 285
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.04 E-value=3.2e+02 Score=22.28 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
.+|...+.+.+.++++|+.+-+=..-++
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~~Y~~fL~ 115 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYKKYEEFLE 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777665554443
No 286
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=28.98 E-value=2.1e+02 Score=22.71 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHH--hHH
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQ--REK 230 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQ--REk 230 (347)
...+++.++.++|..+..+.-.++++|..+....-+---+.| +||
T Consensus 27 ~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~Ek 73 (80)
T PF11488_consen 27 SRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQEK 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHh
Confidence 356788999999999999999999999988766554444444 665
No 287
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=28.65 E-value=58 Score=24.09 Aligned_cols=10 Identities=50% Similarity=0.982 Sum_probs=8.3
Q ss_pred cccchhhhhh
Q 019002 69 QRLPHLHAHS 78 (347)
Q Consensus 69 QrLPhLhAhS 78 (347)
|..||+|.|=
T Consensus 75 ~~v~H~H~hi 84 (86)
T cd00468 75 QSVPHVHLHV 84 (86)
T ss_pred CcCCEEEEEe
Confidence 7889999883
No 288
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=28.36 E-value=57 Score=25.13 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhhcCCCc--cc--------ccccchhhhh
Q 019002 47 KAASLSRLIRDLRLRLPPP--DI--------SQRLPHLHAH 77 (347)
Q Consensus 47 kAasL~rsiqdLRlRlPPp--~i--------sQrLPhLhAh 77 (347)
=+.-+++..+.|+..+.|+ ++ -|..||+|.|
T Consensus 59 l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~HiH 99 (103)
T cd01277 59 LILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVH 99 (103)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEEEE
Confidence 3444555556666555442 22 3788999988
No 289
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.22 E-value=3.5e+02 Score=22.52 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
-.++.++..+++++...+.+-..|+..----||-.. +|.| +-.+..+.+++..++-++..++.+-
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~d--------v~~L-------~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDD--------VHDL-------QLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--------HHHH-------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345677777777777777776676666555676432 2222 3344455566666666665555444
Q ss_pred h
Q 019002 272 R 272 (347)
Q Consensus 272 R 272 (347)
+
T Consensus 96 ~ 96 (106)
T PF10805_consen 96 D 96 (106)
T ss_pred H
Confidence 3
No 290
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=28.15 E-value=6.1e+02 Score=26.87 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
++...-+|+..++..+..++.+|..+++
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677788888888889999988764
No 291
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.83 E-value=3.5e+02 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 186 DIAEKLEVKKKELSSMEERVQELE 209 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~le 209 (347)
++=+.++....|+..||.+...||
T Consensus 236 ~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 236 DTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678888888888888887664
No 292
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=27.67 E-value=6.6e+02 Score=25.48 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH-HHHHHHHhhhccCCC
Q 019002 111 AAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASE-LDKVQTAMNTSKSGK 166 (347)
Q Consensus 111 aayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~e-le~~~~~~~~~q~~~ 166 (347)
.-|+-|+...+.++.+-...+..++.+++.+...-..-+++ ++.++.+++-.+...
T Consensus 87 ~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~ 143 (352)
T COG1566 87 RDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777888888888888888888888888888888884 888888887766554
No 293
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.52 E-value=5.8e+02 Score=24.79 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
++.....|+..++++...||.+-..|.+
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666555443
No 294
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.15 E-value=1e+03 Score=27.65 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=45.9
Q ss_pred hhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHH-HHHHHh
Q 019002 172 LADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLE-VKQTQA 250 (347)
Q Consensus 172 ~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~-~KQaQa 250 (347)
..+-..+|++..+..+.++|+ +|-+.|+.+++..||+-...+.---.---| -.|+..+.|+-.=.+--- .+++-.
T Consensus 656 ~ed~e~lD~d~i~~~q~eel~---Ke~kElq~rL~~q~KkiDh~ERA~R~EeiP-L~e~~~~~~~~~d~e~~e~~Ek~Ri 731 (988)
T KOG2072|consen 656 LEDLEKLDADQIKARQIEELE---KERKELQSRLQYQEKKIDHLERAKRLEEIP-LIEKAYDERQEEDRELYEAREKQRI 731 (988)
T ss_pred hHHhhhcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-hHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445677766644455554 555567889999999888765422222222 344444444433222222 233344
Q ss_pred hhhhhhhhhhHHhhhHH
Q 019002 251 EGLVSEIHLKEKELETL 267 (347)
Q Consensus 251 E~L~tE~nalelqLErL 267 (347)
+....|+.+--.+-.++
T Consensus 732 ~~~~ae~e~~vk~k~~l 748 (988)
T KOG2072|consen 732 EAAIAERESAVKDKKRL 748 (988)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444443333333333
No 295
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.09 E-value=9.5e+02 Score=27.12 Aligned_cols=162 Identities=23% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccch
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLK---EMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDT 180 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~---eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~ 180 (347)
....+|-++--|-+.+|-|...+-.+.--++...++ ++-.+=..|++|++..+ ......
T Consensus 233 l~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lq------------------skl~~~ 294 (716)
T KOG4593|consen 233 LSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQ------------------SKLGRL 294 (716)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH------------------HHHHHH
Q ss_pred hhhhhhHHH---HHHHHHHHHHHHHHHHHH-------------HHHHHHHHhHhhhcCCCh-------------------
Q 019002 181 DALRSDIAE---KLEVKKKELSSMEERVQE-------------LEKKWAQVQNDALKQPSP------------------- 225 (347)
Q Consensus 181 e~~~s~il~---~Le~kk~el~~~e~~v~~-------------lek~w~~vq~~alk~Psp------------------- 225 (347)
+-++++.+. +-+..+.+|.+||.--++ +.+.|+-+-.---++||-
T Consensus 295 ~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k 374 (716)
T KOG4593|consen 295 EKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELK 374 (716)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHH
Q ss_pred ----------------------HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCCcchhh
Q 019002 226 ----------------------AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDT 283 (347)
Q Consensus 226 ----------------------aQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n~e~d~ 283 (347)
-|+-+.+=.+-.-|-.-+-.--.-.+.+..|..-...+.|++.+++.++...+.+..+
T Consensus 375 ~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~ 454 (716)
T KOG4593|consen 375 QVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEA 454 (716)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhh
No 296
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.87 E-value=5.6e+02 Score=24.38 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=14.1
Q ss_pred HhhhhhhhhhhhHHhhhHHHHH
Q 019002 249 QAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 249 QaE~L~tE~nalelqLErLn~l 270 (347)
-+.++..++..++.|.+.|+.-
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESH 182 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777766543
No 297
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.84 E-value=90 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCC
Q 019002 38 QKYVRELDQKAASLSRLIRDLRLRLPP 64 (347)
Q Consensus 38 ~~~v~eLd~kAasL~rsiqdLRlRlPP 64 (347)
|.-+.++|.|-.+|+..+.+|+-.+|+
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~ 36 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPD 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 678999999999999999999999965
No 298
>PLN02320 seryl-tRNA synthetase
Probab=26.81 E-value=2.4e+02 Score=29.99 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=33.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 138 LKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 138 l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
+-+++..-..+..++++++.+.+.--..... ...+.+.+ .+.++.++.|+++..+|+++..+|.+.
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~----~l~~~~k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQ----ALVEEGKNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556666655554432211110 11122223 344677777888888777777666543
No 299
>PF14282 FlxA: FlxA-like protein
Probab=26.79 E-value=2.2e+02 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=9.1
Q ss_pred HHHhhhhhhhhhhhHHhhhHH
Q 019002 247 QTQAEGLVSEIHLKEKELETL 267 (347)
Q Consensus 247 QaQaE~L~tE~nalelqLErL 267 (347)
+.+.+.|..+|..|+.+|-++
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 300
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.54 E-value=6.8e+02 Score=25.23 Aligned_cols=142 Identities=19% Similarity=0.308 Sum_probs=75.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhh
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDAL 183 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~ 183 (347)
-.|..+..+|.-=.-....+.+|....++.|...-.++.+-=+.|+++.++.-..+.. +
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e---------------------L 88 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE---------------------L 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H
Confidence 3455555666655566666677777777777777777766666677666655422221 1
Q ss_pred hhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH---------
Q 019002 184 RSDIAEKLEVK-------KKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ--------- 247 (347)
Q Consensus 184 ~s~il~~Le~k-------k~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQ--------- 247 (347)
. ....++.++ ...+.+++..++.||+.-.- .|+|--.|..+-.++.-|-+.|-..+
T Consensus 89 ~-~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T-------~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~ 160 (294)
T COG1340 89 R-KEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT-------SVLTPEEERELVQKIKELRKELEDAKKALEENEKL 160 (294)
T ss_pred H-HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222 23445777777777764322 34443344444444444444443333
Q ss_pred ----HHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 248 ----TQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 248 ----aQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
+++.++..+...+-..+..|-+.-..+
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~ 191 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEY 191 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666555555555554433333
No 301
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.02 E-value=1.9e+02 Score=28.89 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=0.5
Q ss_pred HHhHHHHHHhHHHHHHHHHHHH
Q 019002 136 RKLKEMDEMENNLASELDKVQT 157 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~ 157 (347)
..+.+|...-.+|+.++++..+
T Consensus 98 k~l~el~~~~~elkkEie~IKk 119 (370)
T PF02994_consen 98 KELNELKKRIKELKKEIENIKK 119 (370)
T ss_dssp --------------------H-
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555566666665543
No 302
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=25.93 E-value=5.5e+02 Score=27.34 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 019002 101 LREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLA 149 (347)
Q Consensus 101 ~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~ 149 (347)
.+...|+.-..-.++.|..++....+-.+.+++|..++++++......+
T Consensus 293 ~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~~~~~~v~ 341 (564)
T COG1293 293 KELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVR 341 (564)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhe
Confidence 3444455556677788888888887888899999999999887765554
No 303
>PRK00736 hypothetical protein; Provisional
Probab=25.84 E-value=3.2e+02 Score=21.32 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019002 200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLV 254 (347)
Q Consensus 200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~ 254 (347)
++++.+.+||-+-+. +|.-+..|=+-+++-|.++..|.
T Consensus 2 ~~e~Ri~~LE~klaf-----------------qe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 2 DAEERLTELEIRVAE-----------------QEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred CHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555 34444555555555555554433
No 304
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.74 E-value=2.6e+02 Score=28.41 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 188 AEKLEVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~ 211 (347)
.++..+.|++++.+|+++..+|.+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 72 IAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666555544
No 305
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.22 E-value=1.8e+02 Score=25.02 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 229 EKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 229 Ek~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
=..||.++..|.+++.+=..++-.|..|-+.|+++-+.|-.....+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999988776544443
No 306
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=25.17 E-value=4.5e+02 Score=22.76 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
+-+.+...+++|...+.++...+....+ .....+..+..+.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~---~~~e~e~~L~~A~ 87 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANE---LTKQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4577888888898888888877665443 3344444444444
No 307
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.98 E-value=3.3e+02 Score=29.74 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHhHHHHHHHHHHHHHhhhcc
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRK--------------LKEMDEMENNLASELDKVQTAMNTSK 163 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~--------------l~eme~~E~~l~~ele~~~~~~~~~q 163 (347)
.+||||.-...-|.+...||..-.+|...+-.- ++||+..+-.++..+..++.++..-.
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888888888877776666555444 44555555555555555555555443
No 308
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=24.72 E-value=4.5e+02 Score=25.28 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHH
Q 019002 238 SLIEQLEVKQTQAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 238 SLtEqL~~KQaQaE~L~tE~nalelqLErLn~l 270 (347)
...-.+...|++.+.+...++..+.+|+.+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 180 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTN 180 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777777777777777766543
No 309
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.57 E-value=4.8e+02 Score=22.87 Aligned_cols=65 Identities=6% Similarity=0.080 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHhHHHHHHHHHHHHHh
Q 019002 95 TREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLK--EMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 95 t~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~--eme~~E~~l~~ele~~~~~~ 159 (347)
+...|.......++..+.|++.+.+.+.+.++-+.++..-..+.+ -++.++.......+.++.++
T Consensus 58 ~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i 124 (174)
T PRK07352 58 ALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556677788888888888888888777765444332 23344444444444444333
No 310
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.53 E-value=4.1e+02 Score=22.08 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=45.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 019002 101 LREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG 165 (347)
Q Consensus 101 ~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~ 165 (347)
.+=.+|..+|.+-.+.|+.-+.-+++=..-+..-+.-+.+....|+.++.+.+..+..+...-..
T Consensus 25 ~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~ 89 (110)
T PF10828_consen 25 QRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKD 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45567888899989999877766655544455555556667777888888888888777655443
No 311
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=24.50 E-value=4e+02 Score=23.87 Aligned_cols=64 Identities=30% Similarity=0.310 Sum_probs=42.2
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHH-HhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019002 134 LRRKLKEMDEMENNLASELDKVQT-AMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQEL 208 (347)
Q Consensus 134 L~~~l~eme~~E~~l~~ele~~~~-~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~l 208 (347)
-++||-||+.+=-.+|++++-.+. +++--|+... .+|.--...-++-++|-+|+..|-+.+-+|
T Consensus 53 ~R~KL~EmdnmLiqIKtqVEAseesAlnhlq~p~~-----------gae~r~a~~cekaeeKA~E~AkMaemlVeL 117 (127)
T PF15155_consen 53 NRSKLWEMDNMLIQIKTQVEASEESALNHLQSPGA-----------GAEERVARRCEKAEEKAAEAAKMAEMLVEL 117 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCCCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999987653 3333333222 222222234578889999999987766544
No 312
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.43 E-value=2.6e+02 Score=25.95 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
+...+..|-+++..-|.+.|.|..|...++.+++.++.=|+-+.+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888888888999999998888888888877653
No 313
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.38 E-value=8.4e+02 Score=25.60 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE------KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE------k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
.+++.+++-....+++..+.++-..++..--+..-|.--+ ..+..++..|..+|-+.-=-.+++..+....+.+
T Consensus 405 ~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~ 484 (569)
T PRK04778 405 MLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATED 484 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3333333444444555555555555555444555553222 1234445555554444332333333333333344
Q ss_pred hhHHHHHHhhhhcCCc---chhhhhcccccc
Q 019002 264 LETLNGLRRRIEGSNV---EEDTARNRLRRV 291 (347)
Q Consensus 264 LErLn~l~Rn~~s~n~---e~d~aRnRf~r~ 291 (347)
++.|..+.-.+..+-. ..=--+|||...
T Consensus 485 ~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~ 515 (569)
T PRK04778 485 VETLEEETEELVENATLTEQLIQYANRYRSD 515 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4444333333322111 011127888764
No 314
>PRK00846 hypothetical protein; Provisional
Probab=24.27 E-value=3.2e+02 Score=22.36 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHh
Q 019002 229 EKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRR 272 (347)
Q Consensus 229 Ek~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~R 272 (347)
.-.++.|+..|=..|+--...+|.|+..+.....++.+|..+.+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555544433
No 315
>PF14992 TMCO5: TMCO5 family
Probab=24.21 E-value=3.6e+02 Score=26.89 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=60.1
Q ss_pred hccccchHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 89 LSSHSSTREQTQ----LREVTLQEENAAYEKAISSCESRIQEKIQE----ADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 89 lnaHSat~eQaq----~Re~tlqeenaayekAis~c~~~i~ek~~e----a~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
.|.-|.-++.+- .....|..+|..--+-|-+.++++-++..- -..+..++++++..=+.+.......++.+.
T Consensus 54 e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~ 133 (280)
T PF14992_consen 54 EDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIA 133 (280)
T ss_pred HhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHH
Confidence 344455555554 444566666766666666766666655432 234555566665555555555544444443
Q ss_pred hccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002 161 TSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQND 218 (347)
Q Consensus 161 ~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~ 218 (347)
.-.+ +...-+....+.- .=+++|++|-..+.. +..+--||++|+.+|..
T Consensus 134 kve~------d~~~v~~l~eDq~--~~i~klkE~L~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 134 KVED------DYQQVHQLCEDQA--NEIKKLKEKLRRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHH------HHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhch
Confidence 3221 1111111111111 012344444433444 44566788889888776
No 316
>PF13166 AAA_13: AAA domain
Probab=23.89 E-value=8.5e+02 Score=25.46 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=50.0
Q ss_pred cccccchhhhhhhhhhhhhhhh-hccccc-hHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 019002 67 ISQRLPHLHAHSLAYSAALSQQ-LSSHSS-TRE------QTQLREVTLQEENAAYEKAISSCESRIQEKIQEA---DSLR 135 (347)
Q Consensus 67 isQrLPhLhAhSLAs~aaLalq-lnaHSa-t~e------Qaq~Re~tlqeenaayekAis~c~~~i~ek~~ea---~~L~ 135 (347)
|.+++|+...+ ....+..| +-.+.. .+- ..+.....|......|++.+..+...+..-.... ....
T Consensus 245 v~~G~~~~~~~---~~CpfC~q~~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (712)
T PF13166_consen 245 VEQGLELHKEG---DTCPFCQQEPLSEERKERLEKYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFE 321 (712)
T ss_pred HHcCccCCCCC---CcCCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence 56777755544 55666666 222211 100 1111222345555556666655544443332221 2223
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcc
Q 019002 136 RKLKEMDEMENNLASELDKVQTAMNTSKSGKFT 168 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~ 168 (347)
....+++..-..+...++.....+.......+.
T Consensus 322 ~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~ 354 (712)
T PF13166_consen 322 EDKEELKSAIEALKEELEELKKALEKKIKNPSS 354 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345555555566777777777777776655444
No 317
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=23.76 E-value=55 Score=25.54 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCccc--------ccccchhhhh
Q 019002 32 VFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDI--------SQRLPHLHAH 77 (347)
Q Consensus 32 ~ft~~Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~i--------sQrLPhLhAh 77 (347)
.+|++....+.++-..+..+.+.+. .--++=++ -|..||+|.|
T Consensus 50 dl~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~n~~~~~g~~~g~~v~H~HiH 100 (104)
T cd01276 50 DATEEDEELLGHLLSAAAKVAKDLG---IAEDGYRLVINCGKDGGQEVFHLHLH 100 (104)
T ss_pred HcccccHHHHHHHHHHHHHHHHHhC---CCCCCEEEEEeCCCCCCCceeEEEEE
Confidence 3455666666666666655555542 10112222 2678999988
No 318
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.73 E-value=6e+02 Score=29.38 Aligned_cols=86 Identities=23% Similarity=0.287 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHH----------HHHHHHHHHHhhhh------
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSL----------IEQLEVKQTQAEGL------ 253 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSL----------tEqL~~KQaQaE~L------ 253 (347)
+.--...|+-.++++.+.|-+--.. .-...-+||-.--=.+|.++|.-| -.+|++|||++--+
T Consensus 638 ~i~~~q~e~~klqeq~~Al~~i~~~-~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~ 716 (1104)
T COG4913 638 KIMRQQGEYIKLQEQANALAHIQAL-NFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQ 716 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666677766665442221 223456676532234555555544 46888999986543
Q ss_pred -hhhhhhhHHhhhHHHHHHhhhhc
Q 019002 254 -VSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 254 -~tE~nalelqLErLn~l~Rn~~s 276 (347)
++|--.+..+|+|....||.++|
T Consensus 717 ~~~e~~~~k~~lkrA~~~~~k~~s 740 (1104)
T COG4913 717 EVTECAGLKKDLKRAAMLSRKVHS 740 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777888999999999999864
No 319
>PRK12705 hypothetical protein; Provisional
Probab=23.58 E-value=8.1e+02 Score=26.17 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
+..+...-.+.++|++.....++..|++ ..|||..|+++. +.|..+..+++....++...+.+
T Consensus 58 ~~~~~~~~~~~e~e~~~~~~~~~~~e~r-------------l~~~e~~l~~~~----~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 58 KELLLRERNQQRQEARREREELQREEER-------------LVQKEEQLDARA----EKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHhhhh
Q 019002 264 LETLNGLRRRIE 275 (347)
Q Consensus 264 LErLn~l~Rn~~ 275 (347)
|+.+.....+..
T Consensus 121 ~~~~~~~~~~~L 132 (508)
T PRK12705 121 LEELEKQLDNEL 132 (508)
T ss_pred HHHHHHHHHHHH
No 320
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.54 E-value=1.3e+03 Score=27.31 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=48.7
Q ss_pred HhhhHHHHHHHHHHhhhcCCCcccccc---cchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhH-HHHHHHHHHHHH
Q 019002 44 LDQKAASLSRLIRDLRLRLPPPDISQR---LPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQ-EENAAYEKAISS 119 (347)
Q Consensus 44 Ld~kAasL~rsiqdLRlRlPPp~isQr---LPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlq-eenaayekAis~ 119 (347)
.-+--=.|-|-|--|=-+- |||-=| |--|+=+|||-..=-++=.-.-.+... =|.||- =|-|+=.|-|-|
T Consensus 319 INqSLLTLGRVInALVe~s--~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~----lEETlSTLEYA~RAKnIkN 392 (1041)
T KOG0243|consen 319 INQSLLTLGRVINALVEHS--GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHN----LEETLSTLEYAHRAKNIKN 392 (1041)
T ss_pred hhHHHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCccc----HHHHHHHHHHHHHhhhccC
Confidence 3333445677777765443 233222 455888899854322111111000000 012221 144555555554
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcc
Q 019002 120 CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFT 168 (347)
Q Consensus 120 c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~ 168 (347)
-= .+-.|++--..+ .++-.|+|.+...++|++.++--
T Consensus 393 KP-evNQkl~K~~ll-----------Kd~~~EIerLK~dl~AaReKnGv 429 (1041)
T KOG0243|consen 393 KP-EVNQKLMKKTLL-----------KDLYEEIERLKRDLAAAREKNGV 429 (1041)
T ss_pred CC-ccchHHHHHHHH-----------HHHHHHHHHHHHHHHHhHhhCce
Confidence 11 122234433333 34556666777777777665543
No 321
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=23.24 E-value=60 Score=24.05 Aligned_cols=13 Identities=54% Similarity=0.478 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhH
Q 019002 95 TREQTQLREVTLQ 107 (347)
Q Consensus 95 t~eQaq~Re~tlq 107 (347)
|++|-+.||..|+
T Consensus 3 tpeQ~qHRE~qL~ 15 (40)
T PF11502_consen 3 TPEQRQHRERQLA 15 (40)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7899999999886
No 322
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=23.21 E-value=5.2e+02 Score=22.81 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH--HHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE--KMLNKQLHSLIEQLE 244 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE--k~LEkrLhSLtEqL~ 244 (347)
++++..+.|+..++.++..++++|..|-.+..+.=.-=+++ +++-.-|...++..+
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i 220 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQI 220 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999988766543333333 333333444444433
No 323
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.19 E-value=6.9e+02 Score=25.47 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred HHHHHHHHhHhhhcCC-ChHHhHHHH------HHHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 208 LEKKWAQVQNDALKQP-SPAQREKML------NKQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 208 lek~w~~vq~~alk~P-spaQREk~L------EkrLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
|-.=|..++.-+ .+| +++.|...+ =.+++++..+|..-+. ++...+.++|.+-.++..||..-+..
T Consensus 114 l~~ff~a~~~ls-~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~ 190 (431)
T PRK06799 114 MDGFFNAFREVA-KNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQA 190 (431)
T ss_pred HHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444433 455 456666554 4688888888877664 56678999999999999999888774
No 324
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=23.01 E-value=56 Score=30.03 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhh
Q 019002 47 KAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAAL 85 (347)
Q Consensus 47 kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaL 85 (347)
-+..|.+.|.+|+-..|...| ||.|||+|....+
T Consensus 75 s~~~l~~~L~~L~~~~~~~~I-----~ilaHSMG~rv~~ 108 (233)
T PF05990_consen 75 SGPALARFLRDLARAPGIKRI-----HILAHSMGNRVLL 108 (233)
T ss_pred HHHHHHHHHHHHHhccCCceE-----EEEEeCchHHHHH
Confidence 355788999999999777776 8999999987544
No 325
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.98 E-value=3.3e+02 Score=29.06 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 195 KKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE-KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 195 k~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE-k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
+.-|..++.+..+|||+.+..+ .| .++.+++..+ |..++.+.+|+..|+.|++.
T Consensus 68 qSALteqQ~kasELEKqLaaLr-----------qElq~~saq~~dl-------e~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIR-----------RELDVLNKQRGDD-------QRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHh
Confidence 3446667777778888777652 11 1111333333 44455666666666666643
No 326
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=22.96 E-value=5.3e+02 Score=23.12 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 102 REVTLQEENAAYEKAISSCESRIQ----------------EKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 102 Re~tlqeenaayekAis~c~~~i~----------------ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
|=.|..|=|.-+||.|..|+++|. +++. ...|..-|+.||.....|-.++-+.+
T Consensus 9 RYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms-~~~l~~llkqLEkeK~~Le~qlk~~e 78 (129)
T PF15372_consen 9 RYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMS-VESLNQLLKQLEKEKRSLENQLKDYE 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888999999999999999986 3332 35666777777776666666665554
No 327
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.72 E-value=4.6e+02 Score=28.04 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 019002 109 ENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELD 153 (347)
Q Consensus 109 enaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele 153 (347)
..+.+||=|...++..++=......++++|++++..-..|+++++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666554445555678888888887777777774
No 328
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.65 E-value=5.4e+02 Score=24.04 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=20.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019002 97 EQTQLREVTLQEENAAYEKAISSCESRIQEKI 128 (347)
Q Consensus 97 eQaq~Re~tlqeenaayekAis~c~~~i~ek~ 128 (347)
+-.......++++...|++.+...+.-|++-.
T Consensus 121 e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~ 152 (176)
T PF12999_consen 121 ELGKEYREELEEEEEIYKEGLKIRQELIEEAK 152 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677788888888776555444433
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.63 E-value=8.4e+02 Score=24.99 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc------------CCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKWAQVQNDALK------------QPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLV 254 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk------------~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~ 254 (347)
+-++|+..+.++...+++...++..-..++...-+ ..++++ +..-+..+-+++..=.++.-.+.
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKE----WFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777776666665422 223332 33333444444444444444444
Q ss_pred hhhhhhHHhhhHHHHHHhhh
Q 019002 255 SEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 255 tE~nalelqLErLn~l~Rn~ 274 (347)
.++..++.+|++|......+
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444555555554444443
No 330
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.63 E-value=1.6e+02 Score=23.87 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~ 211 (347)
+.|++.-.....|++.|+.||+=
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T PF06667_consen 42 QRLQELYEQAERMEERIETLERI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888889999999999974
No 331
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.56 E-value=3.4e+02 Score=28.80 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHhhhcCCChHHhHHHHHHHHHHHHH
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKW--------AQVQNDALKQPSPAQREKMLNKQLHSLIE 241 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w--------~~vq~~alk~PspaQREk~LEkrLhSLtE 241 (347)
+|+++|++.|.-..++|+...+|+... ..+||+..+ -.-||.||+-|||
T Consensus 264 aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR-------~erLEEqLNdlte 320 (455)
T KOG3850|consen 264 AILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYR-------YERLEEQLNDLTE 320 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHH
Confidence 489999999999999999999987543 246666653 4569999999987
No 332
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.43 E-value=3.8e+02 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 130 EADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 130 ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
|.+.|....++++++-...+..++...+.+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ 34 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQ 34 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555444333
No 333
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=7.4e+02 Score=24.22 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhH
Q 019002 108 EENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDI 187 (347)
Q Consensus 108 eenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~i 187 (347)
-|...|.+--...+.+|++.......|...|.|..+...+ +.+++.+-+-+.....+. +++
T Consensus 89 re~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~n-rqe~~~l~kvis~~p~Rs------------Et~------ 149 (222)
T KOG3215|consen 89 REIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLN-RQEYSALSKVISDCPARS------------ETD------ 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCCCcc------------hhH------
Confidence 3455677777778888888888888888888777665444 556665554433333322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w 212 (347)
.+|.+.++|+..++..-..++.+.
T Consensus 150 -k~l~el~keleel~~~~~s~~~kl 173 (222)
T KOG3215|consen 150 -KDLNELKKELEELDDLNNSTETKL 173 (222)
T ss_pred -HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 677777888777766555444433
No 334
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=22.22 E-value=60 Score=24.72 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=12.1
Q ss_pred cccccCHHHHHHHHHH
Q 019002 29 IPLVFTEEQQKYVREL 44 (347)
Q Consensus 29 ~p~~ft~~Q~~~v~eL 44 (347)
+-.++||+|+..+.+|
T Consensus 84 ~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 84 LYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHTTS-HHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHh
Confidence 3678999999988765
No 335
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=2.6e+02 Score=25.13 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccC
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKS 164 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~ 164 (347)
|+.||...+.++.+=--....+..+|.++...=..+..++..++....+++.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6788888888887777777778888888888888888888777776665554
No 336
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=22.15 E-value=1.5e+02 Score=25.04 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
+..=.+...+.+|.++.+++.+.|..+.+.++.+...|+.
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~d 85 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKD 85 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445566778888899999999999999999999998873
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=22.13 E-value=4.5e+02 Score=27.63 Aligned_cols=27 Identities=11% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
++.+.-+|+...+..+..++.+|..++
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 603 QTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888999999998876
No 338
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=22.06 E-value=6.8e+02 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLK 139 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~ 139 (347)
+-++|...+++|...+.+|...+..-+
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~ 56 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAG 56 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888877665543
No 339
>PRK04406 hypothetical protein; Provisional
Probab=22.00 E-value=4.2e+02 Score=21.23 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019002 200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLV 254 (347)
Q Consensus 200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~ 254 (347)
.||..+.+||-+-+. +|.-+..|=+-+++-|.++..|.
T Consensus 8 ~le~Ri~~LE~~lAf-----------------QE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 8 QLEERINDLECQLAF-----------------QEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666555 44444455555555555544433
No 340
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.98 E-value=3.7e+02 Score=21.24 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
.+|.|+..|=.+|+=-.-.+|.|+..+..-..++.+|..+.|.+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888888888888888888888888888887776666
No 341
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=21.87 E-value=9.1e+02 Score=25.07 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=47.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhh--------
Q 019002 181 DALRSDIAEKLEVKKKELSSMEERV-QELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAE-------- 251 (347)
Q Consensus 181 e~~~s~il~~Le~kk~el~~~e~~v-~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE-------- 251 (347)
+++++-|.+++.+-+.-|+.|-..+ -.|||- +-|||-|..||.+|+++.-.-+.++-
T Consensus 233 ~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI--------------~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 233 NSMHKNIEQKVGNVGPYLDKLHKEITKALEKI--------------ASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666664433 345542 45999999999999998655444332
Q ss_pred ------hhhhhhhhhHHhhhHHHHHHhh
Q 019002 252 ------GLVSEIHLKEKELETLNGLRRR 273 (347)
Q Consensus 252 ------~L~tE~nalelqLErLn~l~Rn 273 (347)
.-+.+.+-.-+++|.+.+.+-+
T Consensus 299 ~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 299 ASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444455566666555433
No 342
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.78 E-value=5.4e+02 Score=26.30 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhccc----cchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 019002 74 LHAHSLAYSAALSQQLSSH----SSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLA 149 (347)
Q Consensus 74 LhAhSLAs~aaLalqlnaH----Sat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~ 149 (347)
||-.|+-+.|+=+|.|+.- -+|-.--+.|-..+.....+-.-=-.+...||+.|-.|...++..|.-+.-.-...+
T Consensus 88 ~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~M 167 (338)
T KOG3647|consen 88 LHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHM 167 (338)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHHh
Q 019002 150 SELDKVQTAM 159 (347)
Q Consensus 150 ~ele~~~~~~ 159 (347)
.|+|+.+.+|
T Consensus 168 dEyE~~EeeL 177 (338)
T KOG3647|consen 168 DEYEDCEEEL 177 (338)
T ss_pred HHHHHHHHHH
No 343
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.76 E-value=3.8e+02 Score=20.67 Aligned_cols=29 Identities=45% Similarity=0.577 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
+|.+++...+..++.+++.+..||+.=+.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~ 31 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAA 31 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888776443
No 344
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=21.76 E-value=4.8e+02 Score=21.86 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---CCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002 192 EVKKKELSSMEERVQELEKKWAQVQNDALK---QPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~w~~vq~~alk---~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq 263 (347)
+..+++...++.+++.++++|...+..--+ ++|+.+++ .++..+..+.+.|-+.+..+..-........+.
T Consensus 39 ~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~-~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~ 112 (158)
T PF03938_consen 39 AKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQ-KRQQELQQKEQELQQFQQQAQQQLQQEEQELLQ 112 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 345
>PRK02119 hypothetical protein; Provisional
Probab=21.65 E-value=3.9e+02 Score=21.21 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
.+|.|+..|=..++--.-.+|.|+.-+-.-..++.+|..+.+.+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998888888888887777766
No 346
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.63 E-value=4.2e+02 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQND 218 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~ 218 (347)
+.|.++-+|--.|-.+++.|+.+|-.++..
T Consensus 281 ~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D 310 (622)
T COG5185 281 DNLYEKIQEAMKISQKIKTLREKWRALKSD 310 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555666666666666655543
No 347
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=1.2e+03 Score=26.26 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=56.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhh
Q 019002 99 TQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT 161 (347)
Q Consensus 99 aq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~ 161 (347)
-|.+-.|+-+....|--.|+.-++...++....+.++.-+..+-.....|..-+..+...+.+
T Consensus 67 ~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 67 LQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 445556777888899999999999999999999999999999999999999999999998888
No 348
>PRK04325 hypothetical protein; Provisional
Probab=21.51 E-value=4.2e+02 Score=21.03 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 019002 200 SMEERVQELEKKWAQ 214 (347)
Q Consensus 200 ~~e~~v~~lek~w~~ 214 (347)
.|++.+.+||.+-+.
T Consensus 6 ~~e~Ri~~LE~klAf 20 (74)
T PRK04325 6 EMEDRITELEIQLAF 20 (74)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455666666655554
No 349
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.45 E-value=2.1e+02 Score=21.24 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
..+..++..|..++.+-+..-+.|..|+..+...-+.++..-|+-
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346777888888888888888888888888866777777777744
No 350
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.42 E-value=7.1e+02 Score=23.75 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhh
Q 019002 95 TREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILAD 174 (347)
Q Consensus 95 t~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~ 174 (347)
+..+...-|..+.++-+.++.+...++.-.+.....-..+..+-+.++.-...|..+++.....+..-+.+.-...-...
T Consensus 195 ~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq 274 (297)
T PF02841_consen 195 ADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQ 274 (297)
T ss_dssp H-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccchhhhhhhHHHHHHHHHHHHHHHH
Q 019002 175 KAGVDTDALRSDIAEKLEVKKKELSSME 202 (347)
Q Consensus 175 ~a~~~~e~~~s~il~~Le~kk~el~~~e 202 (347)
+..+..... .+.+..++|+..|+
T Consensus 275 ~~~l~e~~~-----~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 275 EELLKEGFQ-----EEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHCT-H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHcC
No 351
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.30 E-value=1.9e+02 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~ 211 (347)
++|++.-...+.|++.|+.||+=
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 42 ALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888999999999973
No 352
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.11 E-value=6e+02 Score=24.19 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 019002 90 SSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLAS 150 (347)
Q Consensus 90 naHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ 150 (347)
|.+|.+-++ |-.+|..--.+=-..+.+..++|..-++|+..|+..++++..-=..++.
T Consensus 32 ~~~~~~~~~---r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 32 SVGSGSVED---RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HcCCCchHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444433 3333433334444677889999999999999999888776544444433
No 353
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=21.09 E-value=1.3e+03 Score=26.43 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=74.0
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 137 KLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSD-IAEKLEVKKKELSSMEERVQELEKKWAQV 215 (347)
Q Consensus 137 ~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~-il~~Le~kk~el~~~e~~v~~lek~w~~v 215 (347)
..+.++.++..|+.+|+.+..++.-... + .+.-++....... |--+.-.+.+.+.-+++++..|.| +|
T Consensus 535 qie~Lee~~~~Lrneles~~eel~~k~~----E----v~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK---qv 603 (786)
T PF05483_consen 535 QIENLEETNTQLRNELESVKEELKQKGE----E----VKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK---QV 603 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH---HH
Confidence 4455666677777777766644432111 0 0000111111111 122444566778899999999998 45
Q ss_pred hHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 216 QNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 216 q~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
++- +-.+-+ |......|--+.++.-+|...+-.-||.++.+++.++..+
T Consensus 604 Enk-----~K~iee--LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~ 652 (786)
T PF05483_consen 604 ENK-----NKNIEE--LQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKH 652 (786)
T ss_pred HHH-----HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 532 233333 8888888888999999999999999999999999996644
No 354
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=21.07 E-value=8e+02 Score=24.14 Aligned_cols=69 Identities=30% Similarity=0.420 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHH
Q 019002 191 LEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 191 Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l 270 (347)
...-|+||..|-.++-.|||+=..... --|+-..+|++-...++. ...++..+..++++|+++
T Consensus 239 F~tfk~Emekm~Kk~kklEKE~~~~k~-------------k~e~~n~~l~~m~eer~~----~~~~~~~~~~k~~kLe~L 301 (309)
T PF09728_consen 239 FETFKKEMEKMSKKIKKLEKENQTWKS-------------KWEKSNKALIEMAEERQK----LEKELEKLKKKIEKLEKL 301 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 445677777777777777776333211 123444466666666554 556778899999999999
Q ss_pred Hhhhhc
Q 019002 271 RRRIEG 276 (347)
Q Consensus 271 ~Rn~~s 276 (347)
.|.++.
T Consensus 302 cRaLQ~ 307 (309)
T PF09728_consen 302 CRALQA 307 (309)
T ss_pred HHHHhh
Confidence 998864
No 355
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.00 E-value=6.7e+02 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 97 EQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADS 133 (347)
Q Consensus 97 eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~ 133 (347)
+.|.......++-.+.|++.+.+.+.+.++-+.++..
T Consensus 94 ~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ 130 (204)
T PRK09174 94 DQAARLKQEADAAVAAYEQELAQARAKAHSIAQAARE 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555667777777777777776665543
No 356
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=20.81 E-value=29 Score=26.35 Aligned_cols=15 Identities=53% Similarity=0.941 Sum_probs=10.0
Q ss_pred CCcccccccc-hhhhh
Q 019002 63 PPPDISQRLP-HLHAH 77 (347)
Q Consensus 63 PPp~isQrLP-hLhAh 77 (347)
|-|+|+|||- ||-+|
T Consensus 31 ~lp~vaq~l~~hla~h 46 (47)
T PF04806_consen 31 PLPPVAQRLKDHLAEH 46 (47)
T ss_dssp --SSHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHhc
Confidence 4588999984 66665
No 357
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.79 E-value=5.9e+02 Score=22.51 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
+-+.|...+++|.+.+.++...+...+++ ...-.+.+.++.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~---~~e~e~~L~~Ar 87 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEKLKESKEK---KEDALKKLEEAK 87 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45788889999999999888877665554 334444444444
No 358
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.60 E-value=5.8e+02 Score=22.35 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=55.2
Q ss_pred HHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019002 43 ELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCES 122 (347)
Q Consensus 43 eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~ 122 (347)
++-.+-++|.++|.+... |+-=|+ .-|+|.--.-.+|+.+|+...+.|...+-
T Consensus 13 el~n~La~Le~slE~~K~--------------------S~~eL~-------kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKT--------------------SQGELA-------KQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--------------------hHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888752 122222 23555555667899999999999988888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
+|-|-....+. .|+.-|+.--.-++++.|.+..++
T Consensus 66 ki~ea~~~le~--eK~ak~~l~~r~~k~~~dka~lel 100 (107)
T PF09304_consen 66 KIDEARRNLED--EKQAKLELESRLLKAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 87776555554 444444444445555555555444
No 359
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.59 E-value=8.9e+02 Score=24.48 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=18.2
Q ss_pred HhhhhhcCCCCCchhhhccCCcccccCHHHHH
Q 019002 8 AADVVKAHKDDDDDEDAINSSIPLVFTEEQQK 39 (347)
Q Consensus 8 AaDVVgg~g~~~~~~~~~~~~~p~~ft~~Q~~ 39 (347)
-||.|||+.++|=--.+..+..+...||+|..
T Consensus 10 r~d~l~~~~~~dw~~p~~~~~~~~~ls~~~~~ 41 (306)
T PF04849_consen 10 RADTLYGYDNQDWLTPAAPPDRRPELSPEQIE 41 (306)
T ss_pred ccccccccccccccCCCCCCCCCCCCCHHHHH
Confidence 37999998843322122222345667888864
No 360
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.39 E-value=5.6e+02 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEM 141 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~em 141 (347)
+-+.|...++.|...+.++...+...+++
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 61 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNL 61 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888777666553
No 361
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=20.34 E-value=3.4e+02 Score=24.46 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 228 REKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 228 REk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
+|..|+.+++-..+++.+.+..+++..-+.+.-..+.|++..+.+-.
T Consensus 82 ~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~ 128 (152)
T PF07321_consen 82 REAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQE 128 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888899999999999999999999999899999887666554
No 362
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.18 E-value=6.6e+02 Score=26.83 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVS 255 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~t 255 (347)
+|...+.++..+|.+=+.|+-+| ...|.|-+.|+.|+++|.--...++.|.+
T Consensus 59 ~L~~~~~di~~IE~qn~~Lqvq~--------------~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~ 110 (701)
T PF09763_consen 59 ELNSVRDDIEYIESQNNGLQVQS--------------ANQKLLLNELENLLDTLSIPEEHLEALRN 110 (701)
T ss_pred HHHHHHHHHHHHHhhcCchhhHH--------------HHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence 44445555555555544444333 23566889999999999888888888876
No 363
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=6.2e+02 Score=26.87 Aligned_cols=79 Identities=30% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh------HHhHH--HH----HHHHHHHHHHHHHHHHHhhh-hhhhhhhh
Q 019002 194 KKKELSSMEERVQELEKKWAQVQNDALKQPSP------AQREK--ML----NKQLHSLIEQLEVKQTQAEG-LVSEIHLK 260 (347)
Q Consensus 194 kk~el~~~e~~v~~lek~w~~vq~~alk~Psp------aQREk--~L----EkrLhSLtEqL~~KQaQaE~-L~tE~nal 260 (347)
+|++|+.++++....+++|....+..+++-.- ++-+. .+ ++-+..|..+|-.++-+... +.+.+..+
T Consensus 62 ~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~~~~q~e~~~~~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~ 141 (438)
T COG4487 62 KKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEII 141 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHh
Q 019002 261 EKELETLNGLRR 272 (347)
Q Consensus 261 elqLErLn~l~R 272 (347)
+++.+--.+..|
T Consensus 142 ~kkre~~k~~~~ 153 (438)
T COG4487 142 EKKRENNKNEER 153 (438)
T ss_pred HHHHhhhhHHHH
Done!