Query 019002
Match_columns 347
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 09:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.2 0.37 1.3E-05 39.2 19.9 12 47-58 21-32 (284)
2 1c1g_A Tropomyosin; contractIl 96.0 0.5 1.7E-05 38.5 20.1 21 192-212 177-197 (284)
3 2dfs_A Myosin-5A; myosin-V, in 92.3 2.3 7.8E-05 45.9 14.9 30 110-139 923-952 (1080)
4 3vkg_A Dynein heavy chain, cyt 91.9 13 0.00043 45.0 21.3 75 189-274 2028-2103(3245)
5 3na7_A HP0958; flagellar bioge 91.5 7.3 0.00025 34.8 20.8 129 104-258 28-156 (256)
6 3vkg_A Dynein heavy chain, cyt 91.5 3.2 0.00011 49.8 16.0 53 110-162 1901-1953(3245)
7 3oja_B Anopheles plasmodium-re 90.8 0.94 3.2E-05 43.3 9.0 27 104-130 466-492 (597)
8 3oja_B Anopheles plasmodium-re 88.6 17 0.00059 34.7 16.9 37 232-268 542-578 (597)
9 2zqm_A Prefoldin beta subunit 85.3 11 0.00039 29.1 11.6 93 123-215 7-103 (117)
10 3vp9_A General transcriptional 83.0 7.2 0.00025 31.7 8.7 55 106-160 26-81 (92)
11 2dfs_A Myosin-5A; myosin-V, in 82.3 5.8 0.0002 42.8 10.2 37 232-268 1035-1076(1080)
12 1fxk_A Prefoldin; archaeal pro 81.9 15 0.00052 28.0 10.8 92 124-216 3-99 (107)
13 2v71_A Nuclear distribution pr 77.5 40 0.0014 30.2 13.6 26 126-151 21-46 (189)
14 2jee_A YIIU; FTSZ, septum, coi 73.9 32 0.0011 27.4 10.8 69 117-210 8-76 (81)
15 3hnw_A Uncharacterized protein 72.8 33 0.0011 28.9 10.2 65 187-275 66-130 (138)
16 3na7_A HP0958; flagellar bioge 72.4 53 0.0018 29.2 17.7 21 190-210 119-139 (256)
17 1hx1_B BAG-1, BAG-family molec 65.7 12 0.00041 31.6 5.9 66 188-253 10-75 (114)
18 2p22_C Protein SRN2; endosome, 65.5 8 0.00027 34.4 5.1 92 236-329 74-173 (192)
19 1ez3_A Syntaxin-1A; three heli 61.4 56 0.0019 25.4 8.9 56 185-247 8-63 (127)
20 3r6n_A Desmoplakin; spectrin r 60.2 1.1E+02 0.0037 30.0 12.4 38 186-223 239-276 (450)
21 3mq9_A Bone marrow stromal ant 58.2 51 0.0017 30.8 9.4 18 142-159 396-413 (471)
22 2d4y_A HAP1, flagellar HOOK-as 57.9 64 0.0022 30.9 10.2 71 206-276 44-124 (463)
23 3oja_A Leucine-rich immune mol 56.6 63 0.0022 30.3 9.8 108 90-208 349-475 (487)
24 2b9c_A Striated-muscle alpha t 54.9 37 0.0013 28.9 7.2 54 190-243 88-145 (147)
25 3hnw_A Uncharacterized protein 53.6 99 0.0034 25.9 10.1 113 34-161 23-135 (138)
26 1i6z_A BAG-family molecular ch 53.5 31 0.001 29.8 6.4 64 188-253 20-85 (135)
27 3a7p_A Autophagy protein 16; c 51.1 29 0.00099 30.4 6.0 48 231-278 79-126 (152)
28 2fxo_A Myosin heavy chain, car 50.2 1E+02 0.0035 25.1 17.9 40 230-269 79-118 (129)
29 3cvf_A Homer-3, homer protein 49.2 64 0.0022 25.4 7.2 63 187-266 11-73 (79)
30 2xdj_A Uncharacterized protein 47.0 78 0.0027 24.8 7.4 52 223-274 2-53 (83)
31 1rh5_C Secbeta; protein transl 46.4 9 0.00031 28.2 1.8 24 320-343 30-53 (53)
32 3nmd_A CGMP dependent protein 46.2 55 0.0019 25.6 6.3 45 232-276 24-68 (72)
33 1s94_A S-syntaxin; three helix 45.6 1.2E+02 0.004 25.4 8.8 57 185-248 39-95 (180)
34 3u1c_A Tropomyosin alpha-1 cha 45.2 1.1E+02 0.0038 24.1 13.6 29 189-217 72-100 (101)
35 3itf_A Periplasmic adaptor pro 45.2 13 0.00044 31.7 2.8 42 5-46 13-59 (145)
36 1fio_A SSO1 protein; four heli 42.5 1.4E+02 0.005 24.6 10.5 60 186-250 6-65 (196)
37 3nmd_A CGMP dependent protein 41.5 94 0.0032 24.2 6.9 44 113-156 24-67 (72)
38 3pe0_A Plectin; cytoskeleton, 41.0 1.6E+02 0.0054 26.7 9.5 128 82-223 50-191 (283)
39 4afl_A P29ING4, inhibitor of g 40.1 1.3E+02 0.0044 23.3 9.3 76 39-142 25-100 (104)
40 1wt6_A Myotonin-protein kinase 39.6 69 0.0024 25.6 6.0 58 132-200 13-70 (81)
41 3a7o_A Autophagy protein 16; c 39.1 45 0.0016 26.4 4.8 59 228-289 12-70 (75)
42 2efr_A General control protein 38.2 2E+02 0.0067 24.9 16.6 44 226-269 69-112 (155)
43 2zqm_A Prefoldin beta subunit 37.5 79 0.0027 24.3 6.1 37 105-141 74-110 (117)
44 3ghg_A Fibrinogen alpha chain; 37.2 1.1E+02 0.0037 31.7 8.5 22 190-211 103-125 (562)
45 1ses_A Seryl-tRNA synthetase; 37.0 75 0.0025 30.7 7.0 68 136-213 28-95 (421)
46 3oj7_A Putative histidine tria 36.6 19 0.00066 27.9 2.4 43 31-79 56-107 (117)
47 4dk0_A Putative MACA; alpha-ha 35.6 1.3E+02 0.0043 26.9 7.9 30 242-271 123-152 (369)
48 3q8t_A Beclin-1; autophagy, AT 35.6 1.6E+02 0.0056 23.2 10.4 29 189-217 11-39 (96)
49 3m9b_A Proteasome-associated A 35.6 34 0.0011 32.1 4.2 43 233-275 53-95 (251)
50 2c5k_T Syntaxin TLG1, T-snare 35.3 1.7E+02 0.0056 23.2 8.2 54 139-213 39-92 (95)
51 2eqb_B RAB guanine nucleotide 35.0 1.8E+02 0.0063 23.7 8.1 80 190-270 6-91 (97)
52 1wle_A Seryl-tRNA synthetase; 34.4 98 0.0033 30.9 7.6 26 187-212 121-146 (501)
53 1f5n_A Interferon-induced guan 34.3 1.4E+02 0.0047 30.3 8.7 49 95-143 465-515 (592)
54 2dq0_A Seryl-tRNA synthetase; 34.0 2.2E+02 0.0074 27.8 9.8 71 136-214 31-101 (455)
55 1cun_A Protein (alpha spectrin 33.8 1.9E+02 0.0064 23.4 16.0 64 186-251 143-209 (213)
56 3ljm_A Coil Ser L9C; de novo d 33.6 62 0.0021 21.7 4.1 21 197-217 9-29 (31)
57 1m1j_B Fibrinogen beta chain; 33.5 3.8E+02 0.013 26.8 12.2 7 317-323 255-261 (464)
58 1t7s_A BAG-1 cochaperone; stru 33.5 1.4E+02 0.0047 25.9 7.4 56 188-245 18-76 (137)
59 3euh_A Protein KICB, chromosom 32.5 4E+02 0.014 26.9 11.7 92 98-208 182-273 (440)
60 3n1s_A HIT-like protein HINT; 32.4 31 0.0011 27.0 3.0 46 31-79 52-105 (119)
61 2wwb_C SEC61BETA, protein tran 32.1 13 0.00045 30.5 0.8 20 323-342 73-92 (96)
62 3u59_A Tropomyosin beta chain; 31.9 1.8E+02 0.0062 22.7 13.0 29 189-217 72-100 (101)
63 2dq3_A Seryl-tRNA synthetase; 31.7 1.4E+02 0.0048 28.8 8.0 71 136-214 30-100 (425)
64 2lw1_A ABC transporter ATP-bin 31.4 1.7E+02 0.0059 22.2 9.5 29 189-217 56-84 (89)
65 3ol1_A Vimentin; structural ge 31.0 2.1E+02 0.0072 23.1 13.4 45 111-155 16-60 (119)
66 3edv_A Spectrin beta chain, br 30.9 2.6E+02 0.0089 24.2 17.7 38 37-74 4-41 (323)
67 1fxk_A Prefoldin; archaeal pro 30.8 86 0.003 23.7 5.2 36 105-140 69-104 (107)
68 3efg_A Protein SLYX homolog; x 30.2 1.6E+02 0.0055 22.6 6.6 30 232-261 26-55 (78)
69 3o0z_A RHO-associated protein 28.4 3.1E+02 0.011 24.2 12.0 102 106-216 32-138 (168)
70 1dn1_B Syntaxin 1A, syntaxin b 27.9 2.8E+02 0.0094 24.9 8.8 61 179-246 25-85 (267)
71 2p22_C Protein SRN2; endosome, 27.8 3.2E+02 0.011 24.1 10.4 77 61-138 28-109 (192)
72 3vmx_A Voltage-gated hydrogen 27.7 1.2E+02 0.004 22.3 5.1 36 235-273 8-43 (48)
73 3qne_A Seryl-tRNA synthetase, 27.1 1.6E+02 0.0054 29.5 7.7 69 136-212 33-101 (485)
74 3bas_A Myosin heavy chain, str 27.0 2.2E+02 0.0074 22.0 10.7 34 235-268 50-83 (89)
75 1go4_E MAD1 (mitotic arrest de 26.7 1.4E+02 0.0047 24.5 5.9 33 130-162 13-45 (100)
76 3fpp_A Macrolide-specific effl 26.5 2.2E+02 0.0074 25.1 7.7 29 242-270 122-150 (341)
77 2ww9_C Protein transport prote 26.0 34 0.0012 27.6 2.2 20 322-341 63-82 (87)
78 4egu_A Histidine triad (HIT) p 25.7 27 0.00091 27.1 1.5 46 31-79 53-106 (119)
79 1l8d_A DNA double-strand break 25.3 2.3E+02 0.0079 21.7 10.6 21 190-210 72-92 (112)
80 1m1j_C Fibrinogen gamma chain; 25.3 3.8E+02 0.013 26.2 9.9 29 246-274 103-131 (409)
81 2dgc_A Protein (GCN4); basic d 25.1 1.2E+02 0.0042 22.3 4.9 20 192-211 26-45 (63)
82 1gd2_E Transcription factor PA 24.5 1.5E+02 0.005 22.6 5.4 20 192-211 25-44 (70)
83 3fpp_A Macrolide-specific effl 24.3 1E+02 0.0036 27.1 5.3 24 193-216 66-89 (341)
84 2pnv_A Small conductance calci 24.1 77 0.0026 22.5 3.5 24 229-252 18-41 (43)
85 1g6u_A Domain swapped dimer; d 23.8 1.5E+02 0.0052 21.4 5.0 27 189-215 7-39 (48)
86 2eo4_A 150AA long hypothetical 23.5 51 0.0018 26.5 2.9 13 69-81 90-102 (149)
87 3m9b_A Proteasome-associated A 23.2 68 0.0023 30.0 3.9 43 226-268 53-95 (251)
88 2k42_B Espfu; WAsp, GBD, autoi 22.7 18 0.00062 25.2 0.0 17 63-79 3-20 (36)
89 1ic2_A Tropomyosin alpha chain 22.6 2.5E+02 0.0085 21.1 7.5 15 128-142 40-54 (81)
90 4gkw_A Spindle assembly abnorm 22.2 4E+02 0.014 23.4 13.7 70 189-266 60-130 (167)
91 1lwu_C Fibrinogen gamma chain; 22.0 2.2E+02 0.0075 27.1 7.3 40 104-143 8-47 (323)
92 2l5g_B Putative uncharacterize 22.0 2.2E+02 0.0074 20.4 5.5 37 185-221 5-41 (42)
93 3o0z_A RHO-associated protein 21.8 4.2E+02 0.014 23.4 12.5 44 199-245 65-108 (168)
94 4etp_A Kinesin-like protein KA 21.5 2.5E+02 0.0085 26.9 7.6 16 232-247 29-44 (403)
95 1l8d_A DNA double-strand break 21.3 2.8E+02 0.0096 21.2 10.7 82 189-272 17-102 (112)
96 1sjj_A Actinin; 3-helix bundle 21.1 6.4E+02 0.022 25.3 19.5 200 75-282 423-662 (863)
97 2v4h_A NF-kappa-B essential mo 21.0 1.5E+02 0.0052 24.8 5.2 18 190-207 25-42 (110)
98 1wle_A Seryl-tRNA synthetase; 20.9 4.4E+02 0.015 26.3 9.4 65 95-159 78-153 (501)
99 3u06_A Protein claret segregat 20.8 1.7E+02 0.0057 28.4 6.3 45 231-275 7-51 (412)
100 3p0t_A Uncharacterized protein 20.6 51 0.0018 26.2 2.3 15 68-82 90-104 (138)
101 1y23_A HIT, histidine triad pr 20.5 37 0.0012 27.0 1.4 12 69-80 96-107 (145)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.25 E-value=0.37 Score=39.24 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHh
Q 019002 47 KAASLSRLIRDL 58 (347)
Q Consensus 47 kAasL~rsiqdL 58 (347)
+...|..-|..+
T Consensus 21 ~~~~l~~~l~~l 32 (284)
T 1c1g_A 21 RADEAEADKKAA 32 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.99 E-value=0.5 Score=38.46 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019002 192 EVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~w 212 (347)
...+..+..++..+..++...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (284)
T 1c1g_A 177 ERAEERAELSEGKCAELEEEI 197 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.33 E-value=2.3 Score=45.94 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLK 139 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~ 139 (347)
|.-.|+-|...+.+++++-.+...|..+++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~ 952 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952 (1080)
T ss_dssp ----------------------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.86 E-value=13 Score=45.04 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREK-MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETL 267 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk-~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErL 267 (347)
++|++++.+|..+|++++.|..+++.. .+|| .|+.+.......|..-+.-+.+|.+|+.-=..+.+.+
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~-----------~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATL-----------IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 355555555555555555555555442 2222 3666666666677777777777888877666666666
Q ss_pred HHHHhhh
Q 019002 268 NGLRRRI 274 (347)
Q Consensus 268 n~l~Rn~ 274 (347)
+..+.++
T Consensus 2097 ~~~~~~L 2103 (3245)
T 3vkg_A 2097 NTQMSTV 2103 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6555554
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.52 E-value=7.3 Score=34.78 Aligned_cols=129 Identities=11% Similarity=0.134 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhh
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDAL 183 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~ 183 (347)
.+|..+....+..+...+..+.....++..+....+..+.--..+++..++.+..++... +...
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---------------~~kE- 91 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---------------SERE- 91 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------------SSSH-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------------CHHH-
Confidence 345677777777777777777777777777777777777777777777777776664321 1111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002 184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH 258 (347)
Q Consensus 184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~n 258 (347)
-.++..+++..+++++.+|+.+.++..+-...+.. -+.++.++..+-+.|..+++..+.-..|+.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~----------l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK----------QEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344666666777777776666665554443322 223455555555555555555554444433
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.48 E-value=3.2 Score=49.83 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 110 NAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 110 naayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
...|.+-...-++.+.+++.-..-=..||.|-...=..|+.+|...+..|...
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333455555555566677777766666544
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.76 E-value=0.94 Score=43.33 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQE 130 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~e 130 (347)
.+|+++...-++++...+.+|.++.+.
T Consensus 466 ~~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 466 QQLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 345566666666666666666665544
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.65 E-value=17 Score=34.67 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
++++...|=.++-.++.+.+.+..|.+.+..++..|.
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666667777777777766666664
No 9
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=85.27 E-value=11 Score=29.11 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccch--hhhhhhHHHHHHHHHHHH
Q 019002 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDT--DALRSDIAEKLEVKKKEL 198 (347)
Q Consensus 123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~--e~~~s~il~~Le~kk~el 198 (347)
..|+++.+...|+..++.+..--..+..++.+.....+.-....... -...|...... +.....+-+..+...+++
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555544443333222221111 12233332222 222233334555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019002 199 SSMEERVQELEKKWAQV 215 (347)
Q Consensus 199 ~~~e~~v~~lek~w~~v 215 (347)
+.++.+...++++-..+
T Consensus 87 ~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 87 NALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666554443
No 10
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=83.04 E-value=7.2 Score=31.69 Aligned_cols=55 Identities=9% Similarity=0.259 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002 106 LQEENAAYEKAIS-SCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN 160 (347)
Q Consensus 106 lqeenaayekAis-~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~ 160 (347)
+.-|...|..--. +|+-||.-.++|.+..+.++.+||.+-.++|..+|.-...|.
T Consensus 26 ~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr 81 (92)
T 3vp9_A 26 VSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLK 81 (92)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556654443 899999999999999999999999999999998887665554
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.30 E-value=5.8 Score=42.85 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHH-----HhhhhhhhhhhhHHhhhHHH
Q 019002 232 LNKQLHSLIEQLEVKQT-----QAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQa-----QaE~L~tE~nalelqLErLn 268 (347)
|+.++..|......++. .-..+..|+..++.++|.-.
T Consensus 1035 L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1080)
T 2dfs_A 1035 LKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666533333322 22233455666666665544
No 12
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=81.94 E-value=15 Score=28.04 Aligned_cols=92 Identities=14% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH---HHhhhccCCCcchhhhhhhcccch--hhhhhhHHHHHHHHHHHH
Q 019002 124 IQEKIQEADSLRRKLKEMDEMENNLASELDKVQ---TAMNTSKSGKFTESILADKAGVDT--DALRSDIAEKLEVKKKEL 198 (347)
Q Consensus 124 i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~---~~~~~~q~~~s~~s~~~~~a~~~~--e~~~s~il~~Le~kk~el 198 (347)
+|+++.+...|+..+..+..--..+..++.+.. .++..-.+..-. -...|...... +.....+-+..+....++
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~v-y~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i 81 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEV-YKSSGNILIRVAKDELTEELQEKLETLQLRE 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCE-EEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchH-HHHHhHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444444444444433 333333221111 12333333222 222233344555555666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019002 199 SSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 199 ~~~e~~v~~lek~w~~vq 216 (347)
+.++.+...++++-..++
T Consensus 82 ~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 82 KTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.53 E-value=40 Score=30.24 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHH
Q 019002 126 EKIQEADSLRRKLKEMDEMENNLASE 151 (347)
Q Consensus 126 ek~~ea~~L~~~l~eme~~E~~l~~e 151 (347)
+..++...|+..|.|.-..-..|.++
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544433333333
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.85 E-value=32 Score=27.36 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHH
Q 019002 117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKK 196 (347)
Q Consensus 117 is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~ 196 (347)
+...+.||+.-+..+.+|+..++|+...-..|..+.+.+... .+.+ -.+.+..|.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~---------------------~~~L----~~en~qLk~ 62 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ---------------------REEL----ERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hHHH----HHHHHHHHH
Confidence 456789999999999999999999988888888887776521 1122 256777888
Q ss_pred HHHHHHHHHHHHHH
Q 019002 197 ELSSMEERVQELEK 210 (347)
Q Consensus 197 el~~~e~~v~~lek 210 (347)
|.+.|++++..|=.
T Consensus 63 E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 63 QQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.76 E-value=33 Score=28.88 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
|.++|-..+.+...++..+.+++ +.+-+|-+.|+..|-++|.+..|+..+..++..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~------------------------kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKD------------------------KEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888777654 444556666666666666666666666666555
Q ss_pred HHHHHhhhh
Q 019002 267 LNGLRRRIE 275 (347)
Q Consensus 267 Ln~l~Rn~~ 275 (347)
|...-..++
T Consensus 122 l~~~~~~le 130 (138)
T 3hnw_A 122 YQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.39 E-value=53 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEK 210 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek 210 (347)
+++.++.++..++..+..++.
T Consensus 119 ~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 119 EIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 17
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=65.72 E-value=12 Score=31.58 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGL 253 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L 253 (347)
+++|....+...+...++..++++|..++..=|..|--+--=+-|+||+-..+|++..==-++-++
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl 75 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTL 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678888888889999999999999999999888655333333669999999999987644444333
No 18
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=65.51 E-value=8 Score=34.37 Aligned_cols=92 Identities=9% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh-------cCCcchhhhhccccccccCCCCCCcchhhhccc
Q 019002 236 LHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE-------GSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQ 308 (347)
Q Consensus 236 LhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~-------s~n~e~d~aRnRf~r~~s~~~s~~sD~~v~~~~ 308 (347)
+.+++|+|.+++..+|.+...+..+-.++..|...|+.-. +++-+-++...|+....... +..++.+ +..+
T Consensus 74 l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~-eeeS~~l-~~~F 151 (192)
T 2p22_C 74 FRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKL-DEESSQL-ETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HHHHHHH-HHSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHHH-HHHH
Confidence 3999999999999999988888887777777766665442 45666788888888754443 3444442 2222
Q ss_pred CC-cccccCchhHHHHHHHHHH
Q 019002 309 KL-PYHTGGNETLYKLMLLRSS 329 (347)
Q Consensus 309 kr-pySsg~g~~lrRlmLlRsa 329 (347)
.. +..+.++.|+++|+=.|..
T Consensus 152 ~~~~~e~dv~~Fl~~y~~~R~~ 173 (192)
T 2p22_C 152 RSIDSADDLDQFIKNYLDIRTQ 173 (192)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHHHHHHHHH
Confidence 22 1123448999999999974
No 19
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=61.39 E-value=56 Score=25.43 Aligned_cols=56 Identities=20% Similarity=0.429 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ 247 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQ 247 (347)
.+.+++.++.+.+|..++..|.+|.+.=. ..|-.|+| ++.+..+|.+++.+.....
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~----~~L~~~~~---~~~~~~~l~~l~~~i~~~a 63 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHS----AILASPNP---DEKTKEELEELMSDIKKTA 63 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCSSC---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCc---cHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999987655 45777775 5568888888887665443
No 20
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=60.23 E-value=1.1e+02 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQP 223 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~P 223 (347)
+++.+++..+++|...+.+|+.|.+.-..+-.--...|
T Consensus 239 ~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~~l~~r~~ 276 (450)
T 3r6n_A 239 EQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNP 276 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 67899999999999999999999998887654444454
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.23 E-value=51 Score=30.81 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=8.8
Q ss_pred HHHhHHHHHHHHHHHHHh
Q 019002 142 DEMENNLASELDKVQTAM 159 (347)
Q Consensus 142 e~~E~~l~~ele~~~~~~ 159 (347)
...-.-|..+|+++|+.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhH
Confidence 333444555555555443
No 22
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=57.92 E-value=64 Score=30.90 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhHhhhcCCChHHhHHHHH------HHHHHHHHHHHHHHH----HhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 206 QELEKKWAQVQNDALKQPSPAQREKMLN------KQLHSLIEQLEVKQT----QAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 206 ~~lek~w~~vq~~alk~PspaQREk~LE------krLhSLtEqL~~KQa----QaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
..|..=|..+|+=+..--+++.|.-+|+ .+++++-.+|..-+. +++.-+.++|.+-.++..||.+-....
T Consensus 44 ~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666644445677776655 588888888877665 567889999999999999999988775
Q ss_pred c
Q 019002 276 G 276 (347)
Q Consensus 276 s 276 (347)
+
T Consensus 124 ~ 124 (463)
T 2d4y_A 124 G 124 (463)
T ss_dssp -
T ss_pred c
Confidence 3
No 23
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.61 E-value=63 Score=30.34 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------------HHHHhHHHHH
Q 019002 90 SSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKE-------------------MDEMENNLAS 150 (347)
Q Consensus 90 naHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~e-------------------me~~E~~l~~ 150 (347)
.+..-....-+..+++++++-.+++.-++..+...++..++.......++. ++++...+..
T Consensus 349 ~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (487)
T 3oja_A 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428 (487)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019002 151 ELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQEL 208 (347)
Q Consensus 151 ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~l 208 (347)
+.+++...++..+.....- +..+-...+.+++..+.+..+..+++++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQL-----------AEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHH-----------HHHhhhhhhhhhhhhhhhHhcccHHHHH
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=54.92 E-value=37 Score=28.89 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hcCCChHHhHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQNDA----LKQPSPAQREKMLNKQLHSLIEQL 243 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~a----lk~PspaQREk~LEkrLhSLtEqL 243 (347)
+|+.-.......|.++..||.+.-.|-++- -.----.|||-..|.+++.|+++|
T Consensus 88 dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 88 DLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555666666666655554431 112223678888888888777654
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.64 E-value=99 Score=25.95 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHH
Q 019002 34 TEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAY 113 (347)
Q Consensus 34 t~~Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaay 113 (347)
+|++..|+. .=|+-+-+-|..+|-+ ..-|.|=.+-+|--|||-+- |- --+++..-..|..+...+
T Consensus 23 g~e~ee~L~---~vA~~vd~km~ei~~~-------~~~~~l~~~r~aVLaALNia---dE--l~k~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 23 GYESEEYLQ---RVASYINNKITEFNKE-------ESYRRMSAELRTDMMYLNIA---DD--YFKAKKMADSLSLDIENK 87 (138)
T ss_dssp SCSCHHHHH---HHHHHHHHHHHHHTTC-------HHHHTSCHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHH---HHHHHHHHHHHHHHhc-------cCCCCCCHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHH
Confidence 555554443 3356666677776643 01455555666666665431 21 223344445777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhh
Q 019002 114 EKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT 161 (347)
Q Consensus 114 ekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~ 161 (347)
+|-|.+....+....++.+.+...+.++..--..|..++-.++++++.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888877777777777667777777777766654
No 26
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=53.49 E-value=31 Score=29.78 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH--HHHHHHHHHHHHHHHHHHHHhhhh
Q 019002 188 AEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE--KMLNKQLHSLIEQLEVKQTQAEGL 253 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE--k~LEkrLhSLtEqL~~KQaQaE~L 253 (347)
+++|....+-..+...++.+++++|..++..-+..| -|.| +-|+||+-..+|++..==-++-++
T Consensus 20 lKkL~dveksv~~~~k~l~~l~~el~~iekGFL~k~--l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~ 85 (135)
T 1i6z_A 20 LKKLKDLEVSAEKIANHLQELNKELSGIQQGFLAKE--LQAEALCKLDRKVKATIEQFMKILEEIDTM 85 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456666666677889999999999999999988754 4444 479999999999997654444433
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.06 E-value=29 Score=30.45 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCC
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSN 278 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n 278 (347)
.|+.++..|-+-|..|....|.|..|.-++.+++.-++.-.+.++..|
T Consensus 79 ~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 79 SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778888888999999999999999999999988888887555
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.22 E-value=1e+02 Score=25.09 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
-+||.+++-|.+.|..---+...|..++.-++.++..|..
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555444443
No 29
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.22 E-value=64 Score=25.41 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
+..+|+.-..+=+.||++|+.||..-..-+++ .--+...|..++|+|-.|= .|.|-++-.|-+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~----------q~~~~~Elk~l~e~Ld~KI-------~eL~elRqgLak 73 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAE----------RERARAEVGRAAQLLDVSL-------FELSELREGLAR 73 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHH
Confidence 33455555555566899999999877663322 1225667788888888773 444444444443
No 30
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.04 E-value=78 Score=24.79 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=37.4
Q ss_pred CChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 223 PSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 223 PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
+|-.+|=..||..+.+.-..+..=|.|++.+..|+..|+=++|.++.....+
T Consensus 2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445565666666666666678888999999999988888888876544444
No 31
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=46.40 E-value=9 Score=28.17 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhe
Q 019002 320 LYKLMLLRSSFVLYILALHIAVFI 343 (347)
Q Consensus 320 lrRlmLlRsafVlYIl~LHI~VfI 343 (347)
-+=...+=++|++.+++||+.+||
T Consensus 30 P~~Vl~~si~~i~~V~~L~~~~~~ 53 (53)
T 1rh5_C 30 PEHVIGVTVAFVIIEAILTYGRFL 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CeehhhhHHHHHHHHHHHHHHHhC
Confidence 344566778999999999999986
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.20 E-value=55 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEG 276 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s 276 (347)
|+.-|.--+|+|.+|+..++.+..++..++.++-.|....-.+.|
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777788888999999999999999999999999888777766654
No 33
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=45.57 E-value=1.2e+02 Score=25.36 Aligned_cols=57 Identities=16% Similarity=0.388 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHH
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQT 248 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQa 248 (347)
..++++.++.+.+|..+...|..|++.... .|..|. .++.+..+|.+|+.+......
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~----~L~~~~---~~~~~k~~le~l~~~i~~~a~ 95 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSD----ILSAPQ---TDDQMKEELEELMTDIKRTAN 95 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCC----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCC---chHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999988654 455444 355677777777766554443
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=45.23 E-value=1.1e+02 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
.+|+...+-.+..|..|..|-++-..|++
T Consensus 72 ~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 72 DSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45555555555555555555555555554
No 35
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=45.17 E-value=13 Score=31.69 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=14.8
Q ss_pred hhhHhhhhhcCCCC-Cc-hhhhccCC---cccccCHHHHHHHHHHhh
Q 019002 5 LAWAADVVKAHKDD-DD-DEDAINSS---IPLVFTEEQQKYVRELDQ 46 (347)
Q Consensus 5 LAWAaDVVgg~g~~-~~-~~~~~~~~---~p~~ft~~Q~~~v~eLd~ 46 (347)
++||||++-+.|-- ++ .--++.-+ .-+-+|++|+..+.+|-.
T Consensus 13 ~~~a~~~~~~~~~~~~~~~~~~~~~~~m~~~L~LTdeQkqqir~L~~ 59 (145)
T 3itf_A 13 RGSAAEVGSGDNWHPGEELTQRSTQSHMFDGISLTEHQRQQMRDLMQ 59 (145)
T ss_dssp ----------------------CCCCSTTTTCCCCHHHHHHHHHHHH
T ss_pred hhhcCCCCCCCCCCCCchHhhccccccccccCCCCHHHHHHHHHHHH
Confidence 69999999876521 21 11111000 146799999999988854
No 36
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=42.49 E-value=1.4e+02 Score=24.62 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQA 250 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQa 250 (347)
..++..++.+..|..+...|..|.+.... .+..|++.. ++.++.+++.++......-...
T Consensus 6 ~f~~~~~~i~~~i~~i~~~v~~L~~l~~~----~l~~~~~~~-~~~~~~~i~~l~~~i~~~~~~~ 65 (196)
T 1fio_A 6 GFMNKISQINRDLDKYDHTINQVDSLHKR----LLTEVNEEQ-ASHLRHSLDNFVAQATDLQFKL 65 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCCCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999987655 566677643 4568888988887766544433
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.52 E-value=94 Score=24.24 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002 113 YEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156 (347)
Q Consensus 113 yekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~ 156 (347)
|+.++..-...|+.|-.-+..|...|.|-|..=..|+.+||+.+
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555666777777778888888888887788888887764
No 38
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=41.05 E-value=1.6e+02 Score=26.65 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=65.8
Q ss_pred hhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHhHH
Q 019002 82 SAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQ--------------EKIQEADSLRRKLKEMDEMENN 147 (347)
Q Consensus 82 ~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~--------------ek~~ea~~L~~~l~eme~~E~~ 147 (347)
+-+|--+|++|-..-++...+-..|.+++---...|......++ .+++++..+..=+.+.++++.-
T Consensus 50 h~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~da~e~e~W 129 (283)
T 3pe0_A 50 YSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQ 129 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888766666666655565544222222332222222 2333444444444444444442
Q ss_pred HHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 019002 148 LASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQP 223 (347)
Q Consensus 148 l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~P 223 (347)
|+ .++.....+ .+..-|-|..+. ..++.+.+..+.+|...+..|+.|...-..+-.--...|
T Consensus 130 l~-~~~e~~~~~------------~s~d~g~d~~s~-~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l~~l~~r~p 191 (283)
T 3pe0_A 130 LQ-KLQEALRRK------------YSCDRSATVTRL-EDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHP 191 (283)
T ss_dssp HH-HHHHHHHHH------------HHSCCCSHHHHH-HHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGST
T ss_pred HH-HHHHHHHHh------------cCCccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 22 111111111 111122222222 345788999999999999999999887776644333333
No 39
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=40.07 E-value=1.3e+02 Score=23.32 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=50.2
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHH
Q 019002 39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAIS 118 (347)
Q Consensus 39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis 118 (347)
..+.+||.+...+.+.|..+-...- . +..|.+.+ .|+..+.+=..+|.+++.
T Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~-----------------~--------~~~~~~~~---~r~~~l~~I~~~~~~~~~ 76 (104)
T 4afl_A 25 QLMRDLDQRTEDLKAEIDKLATEYM-----------------S--------SARSLSSE---EKLALLKQIQEAYGKCKE 76 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------T--------CCSCCCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------H--------HCCCCChh---hhHHHHHHHHHHHHHHHH
Confidence 4588999999999998877432210 0 11122322 244556666778999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 019002 119 SCESRIQEKIQEADSLRRKLKEMD 142 (347)
Q Consensus 119 ~c~~~i~ek~~ea~~L~~~l~eme 142 (347)
-|..|++--.+=.+++.+.+.-+|
T Consensus 77 l~dEKv~lA~~~~dlvdkhirrLD 100 (104)
T 4afl_A 77 FGDDKVQLAMQTYEMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877777777776666655
No 40
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.62 E-value=69 Score=25.61 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=28.1
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHH
Q 019002 132 DSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSS 200 (347)
Q Consensus 132 ~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~ 200 (347)
..|++.|+.-=.+.+.+.+||..+..+.-+ +.+..-|+++....|+.+++.++++|..
T Consensus 13 leLQSALeaEIqAKQ~i~EELs~vr~~ni~-----------~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 13 RELQEALEEEVLTRQSLSREMEAIRTDNQN-----------FASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444555555555555433222 2223334455555555566666555544
No 41
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=39.06 E-value=45 Score=26.36 Aligned_cols=59 Identities=25% Similarity=0.373 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCCcchhhhhcccc
Q 019002 228 REKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLR 289 (347)
Q Consensus 228 REk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n~e~d~aRnRf~ 289 (347)
-+..|+..+.+|-+-|..|--+.-.|-..++.+-+..||||. .+.|.|.|.+.-..|+.
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLND---EiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLND---ELISGTIENNVLQQKLS 70 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhH---HHHHhHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999984 45566666665555554
No 42
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=38.20 E-value=2e+02 Score=24.93 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002 226 AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269 (347)
Q Consensus 226 aQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~ 269 (347)
.|||-.++.+++.|+++|-.--+.+|--.--+.-++.++.+|+.
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999888887788888888888753
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.52 E-value=79 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEM 141 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~em 141 (347)
+|.+.....++.|..++.++.....+...++.+|+++
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666665555555555555555443
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.24 E-value=1.1e+02 Score=31.74 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=16.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Q 019002 190 KLEVKKKELS-SMEERVQELEKK 211 (347)
Q Consensus 190 ~Le~kk~el~-~~e~~v~~lek~ 211 (347)
++++.+.|++ .|+.++++|+.+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 6677777777 778888777654
No 45
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.96 E-value=75 Score=30.66 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 136 RKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWA 213 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~ 213 (347)
..+.+++..-..+..++++++.+.+........ ++|.++ ..+.++....|.+++.+|.++..+|.+..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~------~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK------APPEEK----EALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------SCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666555543222111 122122 23457777778888888887777777654
No 46
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=36.63 E-value=19 Score=27.85 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=27.6
Q ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-Cccc--------ccccchhhhhhh
Q 019002 31 LVFTEEQQKYVRELDQKAASLSRLIRDLRLRLP-PPDI--------SQRLPHLHAHSL 79 (347)
Q Consensus 31 ~~ft~~Q~~~v~eLd~kAasL~rsiqdLRlRlP-Pp~i--------sQrLPhLhAhSL 79 (347)
.-+|++.+..+.++=..+..+-+. .++ +=+| -|..||+|-|=+
T Consensus 56 ~dL~~~e~~~l~~l~~~~~~~~~~------~~~~g~ni~~n~g~~agq~v~H~H~Hii 107 (117)
T 3oj7_A 56 NEITEENEAFIGKVLYKVSLIGKK------ECPEGYRVVNNIGEDAGQTVKHIHFHIL 107 (117)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHHH------HCTTCEEEECCCSTTTTCCSSSCCEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEEcCCCCCCeeeeEEEEEEe
Confidence 457888777777776666555543 233 3344 388999999843
No 47
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.61 E-value=1.3e+02 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002 242 QLEVKQTQAEGLVSEIHLKEKELETLNGLR 271 (347)
Q Consensus 242 qL~~KQaQaE~L~tE~nalelqLErLn~l~ 271 (347)
++...+++++.+...+...+.+|+.+....
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555554433
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.60 E-value=1.6e+02 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
.+|+..+.|=..+-..+..|||+...|..
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~ 39 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAE 39 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56667777777777777777777766443
No 49
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.56 E-value=34 Score=32.05 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 233 NKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 233 EkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
|.+++.|..++.+.+++-+.|..+.+.++.|+++|...-..+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888888888889999999999999999999988877775
No 50
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=35.26 E-value=1.7e+02 Score=23.18 Aligned_cols=54 Identities=7% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 139 KEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWA 213 (347)
Q Consensus 139 ~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~ 213 (347)
+|++..=+.|.+.|+++..++...... .. .++...|+-++.++.++..|..+|.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~--------------~~-------~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRD--------------EN-------EDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--------------TT-------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777777777766654322 11 3456677777788888888888884
No 51
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.00 E-value=1.8e+02 Score=23.67 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh-----hhcCCChHHhHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhhHHh
Q 019002 190 KLEVKKKELSSMEERVQELEKKWAQVQND-----ALKQPSPAQREKMLNKQLHSLIEQLEVK-QTQAEGLVSEIHLKEKE 263 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~-----alk~PspaQREk~LEkrLhSLtEqL~~K-QaQaE~L~tE~nalelq 263 (347)
.|+..|.+++.++..+...+.+|..++.. +.+.-. -..-+.++.-|-.||-+|-.- -.+.-.-.-+++..+..
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~a-E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k 84 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA-EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL 84 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777665522 111111 122234566666666666431 11111113455555655
Q ss_pred hhHHHHH
Q 019002 264 LETLNGL 270 (347)
Q Consensus 264 LErLn~l 270 (347)
.++|..+
T Consensus 85 n~~L~~q 91 (97)
T 2eqb_B 85 NKRLTEQ 91 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 52
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.44 E-value=98 Score=30.90 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 187 IAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 187 il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
+.++....|.+++.+|.++.++|.+.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655555443
No 53
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.30 E-value=1.4e+02 Score=30.34 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019002 95 TREQTQLREVTLQEENA--AYEKAISSCESRIQEKIQEADSLRRKLKEMDE 143 (347)
Q Consensus 95 t~eQaq~Re~tlqeena--ayekAis~c~~~i~ek~~ea~~L~~~l~eme~ 143 (347)
.+.+...++.-||.+.+ +++|+|..-+-+.+.-.+|+..|..+.++++.
T Consensus 465 l~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~ 515 (592)
T 1f5n_A 465 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515 (592)
T ss_dssp HHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666554 68888888887777777777788777666554
No 54
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.05 E-value=2.2e+02 Score=27.84 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 136 RKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
..+.+++..-..+..++++++...+.-...+.. ..+.|.+++. ++++....|.+++.+|+++..+|.+...
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGK----RRKKGEPVDE----LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTSCCCTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcccccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666554433211110 0122333333 4477778888888888888877776543
No 55
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=33.79 E-value=1.9e+02 Score=23.36 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh---HHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019002 186 DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSP---AQREKMLNKQLHSLIEQLEVKQTQAE 251 (347)
Q Consensus 186 ~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp---aQREk~LEkrLhSLtEqL~~KQaQaE 251 (347)
.++++.+....++...+..|..|-..=..+-.. ..|.. .++-..|..+-..|..-...++..++
T Consensus 143 ~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~--~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~ 209 (213)
T 1cun_A 143 GLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK--NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888888888766554333221 22221 23333444444444444444444443
No 56
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.59 E-value=62 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 019002 197 ELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 197 el~~~e~~v~~lek~w~~vq~ 217 (347)
.-.-+|.++|.|||+...+++
T Consensus 9 kcaalesklqalekklealeh 29 (31)
T 3ljm_A 9 KCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345678899999999888765
No 57
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.48 E-value=3.8e+02 Score=26.83 Aligned_cols=7 Identities=0% Similarity=-0.225 Sum_probs=4.4
Q ss_pred chhHHHH
Q 019002 317 NETLYKL 323 (347)
Q Consensus 317 g~~lrRl 323 (347)
|++|||+
T Consensus 255 tViQrR~ 261 (464)
T 1m1j_B 255 TLIQNRQ 261 (464)
T ss_dssp EEEEEES
T ss_pred EEEEEee
Confidence 6666664
No 58
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=33.47 E-value=1.4e+02 Score=25.88 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhhhcCCChHHhH--HHHHHHHHHHHHHHHH
Q 019002 188 AEKLEVKKKELSSMEERVQELE-KKWAQVQNDALKQPSPAQRE--KMLNKQLHSLIEQLEV 245 (347)
Q Consensus 188 l~~Le~kk~el~~~e~~v~~le-k~w~~vq~~alk~PspaQRE--k~LEkrLhSLtEqL~~ 245 (347)
++.|..-.+--.+...++..+. ++|..++..=|. .|-|+| |-|+||+-+.+|++-.
T Consensus 18 lK~L~~~Ek~~~~~~~kl~~~n~~el~~iekGFL~--k~l~~ea~kkldKrik~~~E~~MK 76 (137)
T 1t7s_A 18 FKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLE--KPKQVEMGKKLEKKVKYFNEEAER 76 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhc--cHhHHhHHHHHHHHHHHHHHHHHH
Confidence 4666666666777788888887 999999998887 556666 8899999999998754
No 59
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=32.55 E-value=4e+02 Score=26.85 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcc
Q 019002 98 QTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAG 177 (347)
Q Consensus 98 Qaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~ 177 (347)
|-+.|+.--..=|..+.-||++|++-+.|-..-...|+..| +..=.+|.+.|.+.|... .+..+
T Consensus 182 Q~~vk~eIA~LL~~dW~~AI~~Ce~LL~Ets~tLRELqdtL---~aagD~lq~qLl~IQ~~~-------------~~~~~ 245 (440)
T 3euh_A 182 QQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTL---EAAGDKLQANLLRIQDAT-------------MTHDD 245 (440)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------------TTSSS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHH---HHhHHHHHHHHHHHHHHH-------------hcCch
Confidence 33344433333466788899999999888776666665554 345566777777777332 22333
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019002 178 VDTDALRSDIAEKLEVKKKELSSMEERVQEL 208 (347)
Q Consensus 178 ~~~e~~~s~il~~Le~kk~el~~~e~~v~~l 208 (347)
++. . ...+..|++|=..+-+|=.+-.+|
T Consensus 246 l~~--v-d~l~~~Lq~kLDRI~sWGqqsidl 273 (440)
T 3euh_A 246 LHF--V-DRLVFDLQSKLDRIISWGQQSIDL 273 (440)
T ss_dssp CGG--G-TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH--H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2 123567888877778887777655
No 60
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=32.41 E-value=31 Score=27.05 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=28.5
Q ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCccc--------ccccchhhhhhh
Q 019002 31 LVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDI--------SQRLPHLHAHSL 79 (347)
Q Consensus 31 ~~ft~~Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~i--------sQrLPhLhAhSL 79 (347)
.-+|++.+..+.++=..+..+-+. +.+.-+.-+| -|..||||-|=+
T Consensus 52 ~dL~~~e~~~l~~l~~~~~~v~~~---~~~~~~g~ni~~n~g~~agq~V~HlH~Hii 105 (119)
T 3n1s_A 52 NDVSAEHEQALGRMITVAAKIAEQ---EGIAEDGYRLIMNTNRHGGQEVYHIHMHLL 105 (119)
T ss_dssp GGCCGGGHHHHHHHHHHHHHHHHH---TTCTTTCEEEEEEEHHHHTCCSSSCCEEEE
T ss_pred hHcCHHHHHHHHHHHHHHHHHHHH---hCCCCCCeEEEEeCCCCcCCCcCEEEEEEe
Confidence 357888887777776666555442 2222223344 489999999844
No 61
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=32.08 E-value=13 Score=30.45 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019002 323 LMLLRSSFVLYILALHIAVF 342 (347)
Q Consensus 323 lmLlRsafVlYIl~LHI~Vf 342 (347)
..++=+.|++.|++||||.=
T Consensus 73 VLv~sl~Fi~~Vi~Lhi~~K 92 (96)
T 2wwb_C 73 VLVMSLLFIASVFMLHIWGK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHSCSSS
T ss_pred ehhhHHHHHHHHHHHHHhhh
Confidence 35667889999999999853
No 62
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.92 E-value=1.8e+02 Score=22.68 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
.+|+...+....-|..|..|-++--.|++
T Consensus 72 ~kLe~~ek~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 72 EKLEQAEKKATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55666666666666666666666656654
No 63
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.72 E-value=1.4e+02 Score=28.76 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=39.1
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 136 RKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQ 214 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~ 214 (347)
..+.+++..-..+..++++++.+.+......... -+.|.+++++ .++....|.+++.+|.++..+|.+...
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~----~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKL----KREGKDTTEI----QNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG----GSSCSCTTTS----TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666665555432222111 1123344443 366677777777777777777766543
No 64
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.39 E-value=1.7e+02 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.369 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQN 217 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~ 217 (347)
+++...-.++..++..+..++.+|.-+++
T Consensus 56 ~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 56 EQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777778888888888976543
No 65
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.98 E-value=2.1e+02 Score=23.11 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 019002 111 AAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKV 155 (347)
Q Consensus 111 aayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~ 155 (347)
..|++-|.+.+.+|.+-..|-..|...+.-|...-.+++..+++.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 478999999999998888888888777777777777777777654
No 66
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=30.90 E-value=2.6e+02 Score=24.15 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchh
Q 019002 37 QQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHL 74 (347)
Q Consensus 37 Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhL 74 (347)
++.....+.+.+..|.-+|.+-...+-..++.+-++|+
T Consensus 4 ~~~~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v 41 (323)
T 3edv_A 4 MRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHV 41 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHH
Confidence 45566788889999999998877766666777777764
No 67
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.81 E-value=86 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019002 105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKE 140 (347)
Q Consensus 105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~e 140 (347)
+|.+....+++.|..++.++.....+...++.+|++
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666677777777777666666666666654
No 68
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.16 E-value=1.6e+02 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 019002 232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKE 261 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQaQaE~L~tE~nale 261 (347)
+|.-+..|=+.++.-|.++..|......+.
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554444444433333
No 69
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=28.41 E-value=3.1e+02 Score=24.23 Aligned_cols=102 Identities=15% Similarity=0.242 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhh-----hcccch
Q 019002 106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILAD-----KAGVDT 180 (347)
Q Consensus 106 lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~-----~a~~~~ 180 (347)
+..-++-|-|+++..+..+.| |+.++.-++.....|-.++-++|..++.-....+-.++... ..++..
T Consensus 32 lkK~~tEl~k~~~~~E~~~rE-------Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~ 104 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRE-------LQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQE 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677666666555 33444444555555666666666666554433332222211 111111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 181 DALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 181 e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq 216 (347)
|-.+ +...+..-..|...+.++|..|||+-+.++
T Consensus 105 El~~--~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 105 EVKH--LKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 123444455566677888888888877654
No 70
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=27.93 E-value=2.8e+02 Score=24.88 Aligned_cols=61 Identities=21% Similarity=0.431 Sum_probs=43.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHH
Q 019002 179 DTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVK 246 (347)
Q Consensus 179 ~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~K 246 (347)
+.+..-...+++.++.+.++..+...|..|++.-.. .+-.|++.+ .+..+|++++.+....
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~----~l~~~~~~~---~~~~~l~~l~~~i~~~ 85 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA----ILASPNPDE---KTKEELEELMSDIKKT 85 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCSSCCS---HHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCCccH---HHHHHHHHHHHHHHHH
Confidence 333333456789999999999999999999987654 566676643 4677788877776544
No 71
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=27.76 E-value=3.2e+02 Score=24.11 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=44.4
Q ss_pred cCCCcccccccchhhhhhhhhhh-----hhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 61 RLPPPDISQRLPHLHAHSLAYSA-----ALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLR 135 (347)
Q Consensus 61 RlPPp~isQrLPhLhAhSLAs~a-----aLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~ 135 (347)
-+|=|+..+-||-=.-+.|-++- ++.-.+++......+-..= .++-++|-..+.=+.+++.++++++.+...|.
T Consensus 28 ~~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l-~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~ 106 (192)
T 2p22_C 28 NIPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF-RDQFKQLEENFEDLHEQKDKVQALLENARILE 106 (192)
T ss_dssp CCCCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555553 3333333322222111111 56677777777777778888888777777776
Q ss_pred HHh
Q 019002 136 RKL 138 (347)
Q Consensus 136 ~~l 138 (347)
...
T Consensus 107 ~~~ 109 (192)
T 2p22_C 107 SKY 109 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 72
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.67 E-value=1.2e+02 Score=22.26 Aligned_cols=36 Identities=36% Similarity=0.364 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhh
Q 019002 235 QLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRR 273 (347)
Q Consensus 235 rLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn 273 (347)
+|...-.+|++|=+++|-..+|+ |.+.||||.+-|.
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~---eQEieRL~~LLkq 43 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEK---EQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHHHHH
Confidence 35556678999999999888874 6889999988764
No 73
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.15 E-value=1.6e+02 Score=29.50 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=34.2
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002 136 RKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKW 212 (347)
Q Consensus 136 ~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w 212 (347)
..+.+++..-..+..++++++...+.....+.. .-++|-+++. ++++....|.+++.+|.++..+|.+.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~----~k~~~~~~~~----l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK----RFKAKEDAKD----LIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666655544433221111 1112333333 34666667777777776666665544
No 74
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.97 E-value=2.2e+02 Score=21.97 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 235 QLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 235 rLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
.-..|..||+..+-..+.|+.-++-++.+|.-++
T Consensus 50 ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 50 QKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444466666666666666666666665554
No 75
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.73 E-value=1.4e+02 Score=24.47 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002 130 EADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162 (347)
Q Consensus 130 ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~ 162 (347)
+...|+.++++++.--..|+.+.+.++..+.-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888999999988888763
No 76
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.52 E-value=2.2e+02 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHHhhhHHHHH
Q 019002 242 QLEVKQTQAEGLVSEIHLKEKELETLNGL 270 (347)
Q Consensus 242 qL~~KQaQaE~L~tE~nalelqLErLn~l 270 (347)
++...+++++.+..++...+.+|+.+...
T Consensus 122 ~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 122 EMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555433
No 77
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=26.03 E-value=34 Score=27.58 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019002 322 KLMLLRSSFVLYILALHIAV 341 (347)
Q Consensus 322 RlmLlRsafVlYIl~LHI~V 341 (347)
=..++=+.|+..|++||||-
T Consensus 63 ~VLv~sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 63 VVLFLSVGFIFSVIALHLLT 82 (87)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred eehhhHHHHHHHHHHHHHhh
Confidence 35677788999999999985
No 78
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=25.73 E-value=27 Score=27.05 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=27.7
Q ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCccc--------ccccchhhhhhh
Q 019002 31 LVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDI--------SQRLPHLHAHSL 79 (347)
Q Consensus 31 ~~ft~~Q~~~v~eLd~kAasL~rsiqdLRlRlPPp~i--------sQrLPhLhAhSL 79 (347)
.-+|++....+.++=..+..+-+.+ ...-++=+| -|..||||-|=+
T Consensus 53 ~dL~~~e~~~l~~~~~~~~~~~~~~---~~~~~~~ni~~n~g~~agq~v~HlH~Hii 106 (119)
T 4egu_A 53 IDIPDKEMDIVSHIHVVINKIAKEK---GFDQTGFRVINNCGSDGGQEVKHLHYHIL 106 (119)
T ss_dssp GGSCGGGTHHHHHHHHHHHHHHHHH---THHHHCEEEEEEETTTTTCCSCSCCEEEE
T ss_pred hHCCHhHHHHHHHHHHHHHHHHHHh---CCCCCCEEEEEeCCCCCCCCcCEEEEEEe
Confidence 4578887777777766555554432 221122233 588999999944
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.30 E-value=2.3e+02 Score=21.69 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQELEK 210 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~lek 210 (347)
+++..+.++..+.+.+..+++
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 80
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.26 E-value=3.8e+02 Score=26.21 Aligned_cols=29 Identities=7% Similarity=0.144 Sum_probs=13.9
Q ss_pred HHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002 246 KQTQAEGLVSEIHLKEKELETLNGLRRRI 274 (347)
Q Consensus 246 KQaQaE~L~tE~nalelqLErLn~l~Rn~ 274 (347)
..+++..|..-+..+...++.|.+..-.+
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555544445555555554444333
No 81
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.11 E-value=1.2e+02 Score=22.32 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019002 192 EVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~ 211 (347)
+.|+..++.||.+|..|+.+
T Consensus 26 ~RK~~~~~~Le~~v~~L~~e 45 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSK 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888887643
No 82
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.49 E-value=1.5e+02 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019002 192 EVKKKELSSMEERVQELEKK 211 (347)
Q Consensus 192 e~kk~el~~~e~~v~~lek~ 211 (347)
+-|+..+..+|.+|..||+.
T Consensus 25 eRK~~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666653
No 83
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.30 E-value=1e+02 Score=27.15 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 019002 193 VKKKELSSMEERVQELEKKWAQVQ 216 (347)
Q Consensus 193 ~kk~el~~~e~~v~~lek~w~~vq 216 (347)
..+.++...+..+..++......+
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~ 89 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAE 89 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555433
No 84
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.13 E-value=77 Score=22.45 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 019002 229 EKMLNKQLHSLIEQLEVKQTQAEG 252 (347)
Q Consensus 229 Ek~LEkrLhSLtEqL~~KQaQaE~ 252 (347)
.-+||+|+-+|=..|.+=++++.+
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334666666665555555555444
No 85
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.85 E-value=1.5e+02 Score=21.37 Aligned_cols=27 Identities=44% Similarity=0.619 Sum_probs=19.5
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019002 189 EKLEVKKK------ELSSMEERVQELEKKWAQV 215 (347)
Q Consensus 189 ~~Le~kk~------el~~~e~~v~~lek~w~~v 215 (347)
.+|+-.|+ ||.-+|..+|.|||+.+.+
T Consensus 7 selqalkkegfspeelaaleselqalekklaal 39 (48)
T 1g6u_A 7 SELQALKKEGFSPEELAALESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 6788888889888888764
No 86
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=23.48 E-value=51 Score=26.49 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.1
Q ss_pred cccchhhhhhhhh
Q 019002 69 QRLPHLHAHSLAY 81 (347)
Q Consensus 69 QrLPhLhAhSLAs 81 (347)
|..||||-|=+.-
T Consensus 90 q~v~HlHiHviPr 102 (149)
T 2eo4_A 90 QVIFHLHVHIIPT 102 (149)
T ss_dssp CCSCSCCEEEEEE
T ss_pred CCcCEEEEEEECC
Confidence 8899999998753
No 87
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.15 E-value=68 Score=30.02 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002 226 AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN 268 (347)
Q Consensus 226 aQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn 268 (347)
..|-+.|++++.+|.++...-.+.+..+..|+..+..||++|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577789999999988888767788889999999999999983
No 88
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=22.66 E-value=18 Score=25.22 Aligned_cols=17 Identities=47% Similarity=0.768 Sum_probs=12.7
Q ss_pred CCcccccccc-hhhhhhh
Q 019002 63 PPPDISQRLP-HLHAHSL 79 (347)
Q Consensus 63 PPp~isQrLP-hLhAhSL 79 (347)
|=|+|+|+|- ||-||=+
T Consensus 3 ~LPpIAQaLk~HLAaye~ 20 (36)
T 2k42_B 3 MLPDVAQRLMQHLAEHGI 20 (36)
T ss_dssp CCSSHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHHHHhh
Confidence 5578999984 8877744
No 89
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.57 E-value=2.5e+02 Score=21.11 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHH
Q 019002 128 IQEADSLRRKLKEMD 142 (347)
Q Consensus 128 ~~ea~~L~~~l~eme 142 (347)
-.|+..|..+++-++
T Consensus 40 E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 40 EDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 90
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.25 E-value=4e+02 Score=23.40 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhH
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNK-QLHSLIEQLEVKQTQAEGLVSEIHLKEKELET 266 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEk-rLhSLtEqL~~KQaQaE~L~tE~nalelqLEr 266 (347)
++|-..+.|+++++.+.+.-+ .. ||..+.-|...-|+- .|+.|---|-.|-+..|+|+.-|-.+.++||-
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~---~~-----Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEd 130 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKAD---QL-----LKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELEN 130 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HH-----HHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH---HH-----HHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 355556667666665544322 22 344455566666664 48888889999999999999999999988874
No 91
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.04 E-value=2.2e+02 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019002 104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDE 143 (347)
Q Consensus 104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~ 143 (347)
..|++|...||+.|.+-+.+|+.-......+..++.+++.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999888887766666666666665543
No 92
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.00 E-value=2.2e+02 Score=20.38 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 019002 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALK 221 (347)
Q Consensus 185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk 221 (347)
.+++.+.+..-.|+..-|+++.+|-++-..+++.+.|
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~k 41 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAK 41 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4567888899999999999999999998888887765
No 93
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.83 E-value=4.2e+02 Score=23.41 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHH
Q 019002 199 SSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEV 245 (347)
Q Consensus 199 ~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~ 245 (347)
..+|..+..|--.|.+.-. ...+- .++-++|+.|+.+|.+-|..
T Consensus 65 ~~Leke~~~LQa~L~qEr~-~r~q~--se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERR-DRGHD--SEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444221 22222 23334588888888665543
No 94
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.54 E-value=2.5e+02 Score=26.93 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019002 232 LNKQLHSLIEQLEVKQ 247 (347)
Q Consensus 232 LEkrLhSLtEqL~~KQ 247 (347)
++.++..|.++|...+
T Consensus 29 ~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 29 TELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455554444
No 95
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.26 E-value=2.8e+02 Score=21.20 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh--HHh--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhh
Q 019002 189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSP--AQR--EKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKEL 264 (347)
Q Consensus 189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp--aQR--Ek~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqL 264 (347)
++|...+.+...++.++..+++.-...+.. ..|-| .|- .............++..-+.+++.|..++..++.++
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666655554331 22333 110 000111222333344444566666777777777777
Q ss_pred hHHHHHHh
Q 019002 265 ETLNGLRR 272 (347)
Q Consensus 265 ErLn~l~R 272 (347)
+.++..++
T Consensus 95 ~~l~~~~~ 102 (112)
T 1l8d_A 95 RRIDMEIK 102 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 96
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=21.14 E-value=6.4e+02 Score=25.30 Aligned_cols=200 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhh-ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 019002 75 HAHSLAYSAALSQQL-SSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELD 153 (347)
Q Consensus 75 hAhSLAs~aaLalql-naHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele 153 (347)
|...+.+-.+++-+| ..+......-+.|-..|.+.-......+...++++++-.+-...+..-+.+....-..+..=++
T Consensus 423 ~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~ 502 (863)
T 1sjj_A 423 HQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWME 502 (863)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhccCCCcchhhhhhhcccchhhhhhhH------HHHHHHHHHHHHHH---------------HHHHHHHHHHH
Q 019002 154 KVQTAMNTSKSGKFTESILADKAGVDTDALRSDI------AEKLEVKKKELSSM---------------EERVQELEKKW 212 (347)
Q Consensus 154 ~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~i------l~~Le~kk~el~~~---------------e~~v~~lek~w 212 (347)
..+..+....-+.+-++ ...-.-.-+....+| ++.+.....++..+ ...++.|...|
T Consensus 503 ~~e~~l~~~~~g~dl~~--ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw 580 (863)
T 1sjj_A 503 GAMEDLQDTFIVHTIEE--IQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKW 580 (863)
T ss_dssp HHHHHHHCCCCCSSSGG--GHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHH
T ss_pred HHHHHhcchHhhccHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHH
Q ss_pred HHHhHhhhcCCChHHhHHHHHHHHH------HHHHHHHHHHHHhhhhhhhhh------------hhHHhhhHHHHHHhhh
Q 019002 213 AQVQNDALKQPSPAQREKMLNKQLH------SLIEQLEVKQTQAEGLVSEIH------------LKEKELETLNGLRRRI 274 (347)
Q Consensus 213 ~~vq~~alk~PspaQREk~LEkrLh------SLtEqL~~KQaQaE~L~tE~n------------alelqLErLn~l~Rn~ 274 (347)
..|+.-+ .+|...|+.-+. .|..+..++-..++.-..|+. .++.++.++....+.+
T Consensus 581 ~~L~~~~------~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el 654 (863)
T 1sjj_A 581 EHVRQLV------PRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSI 654 (863)
T ss_dssp HHHHHHH------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHH
Q ss_pred hcCCcchh
Q 019002 275 EGSNVEED 282 (347)
Q Consensus 275 ~s~n~e~d 282 (347)
.+.....+
T Consensus 655 ~~~~~~i~ 662 (863)
T 1sjj_A 655 VNYKPKID 662 (863)
T ss_dssp HTTGGGHH
T ss_pred HHhHHHHH
No 97
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.96 E-value=1.5e+02 Score=24.78 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019002 190 KLEVKKKELSSMEERVQE 207 (347)
Q Consensus 190 ~Le~kk~el~~~e~~v~~ 207 (347)
++...+..|...|+.+..
T Consensus 25 ei~~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666655554
No 98
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.90 E-value=4.4e+02 Score=26.27 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002 95 TREQTQLREVTLQEENAAYEKAISSCE-----------SRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM 159 (347)
Q Consensus 95 t~eQaq~Re~tlqeenaayekAis~c~-----------~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~ 159 (347)
.+-+.+.+-..|+.+-.+-.|.|.... ..+.+-+.|+..|..++++++.....+.++++..-..+
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666777777777777776532 13445567777788888888777777777776655433
No 99
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.84 E-value=1.7e+02 Score=28.38 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002 231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE 275 (347)
Q Consensus 231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~ 275 (347)
.|+..|..|-|+...-+...+.+..|...++.+|-+.+..+|.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~ 51 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELH 51 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666666653
No 100
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=20.57 E-value=51 Score=26.15 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=12.2
Q ss_pred ccccchhhhhhhhhh
Q 019002 68 SQRLPHLHAHSLAYS 82 (347)
Q Consensus 68 sQrLPhLhAhSLAs~ 82 (347)
-|..||||.|=+.-.
T Consensus 90 gq~v~HlH~HiiPr~ 104 (138)
T 3p0t_A 90 GLEVPHLHVHVFPTR 104 (138)
T ss_dssp CSSCSSCCEEEEEES
T ss_pred CcccCEEEEEEeccc
Confidence 489999999977654
No 101
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=20.47 E-value=37 Score=27.01 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.8
Q ss_pred cccchhhhhhhh
Q 019002 69 QRLPHLHAHSLA 80 (347)
Q Consensus 69 QrLPhLhAhSLA 80 (347)
|..||||.|=+.
T Consensus 96 ~~v~HlH~HiiP 107 (145)
T 1y23_A 96 QSVFHYHMHIIP 107 (145)
T ss_dssp CCSSSCCEEEEE
T ss_pred CCcCEEEEEEEc
Confidence 889999999885
Done!