BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019003
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 174 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
           +EP+YVNAKQY  IL+RRQARAK E E K+ K R+ YLHESRH+HAM R RG GGRF
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 58


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 174 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRF 230
           + P+YVNAKQ+  IL+RR AR K E + +L  K RKPYLHESRH HAMRR RG GGRF
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 59


>pdb|1UF2|P Chain P, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|C Chain C, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|D Chain D, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|Q Chain Q, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|E Chain E, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|F Chain F, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|R Chain R, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|G Chain G, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|H Chain H, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|S Chain S, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|I Chain I, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|J Chain J, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|T Chain T, The Atomic Structure Of Rice Dwarf Virus (Rdv)
          Length = 421

 Score = 31.6 bits (70), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 14  DPNAIPPGAAYTEPWWR 30
           DP AIP G A+T PW+R
Sbjct: 362 DPPAIPAGLAFTSPWFR 378


>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
 pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
          Length = 485

 Score = 31.2 bits (69), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 189 RRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKT 234
           ++  A++  E  K +++  + YLHE+R    M  AR +GG   K T
Sbjct: 57  QKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKST 102


>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
           Glucose
 pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
           Glucose
 pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With The Substrate Sucrose
 pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With The Substrate Sucrose
 pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Trehalulose
 pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Trehalulose
 pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Isomaltulose
 pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Isomaltulose
          Length = 557

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 108 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 146


>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
 pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
 pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
 pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
 pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Deoxynojirmycin
 pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Deoxynojirmycin
          Length = 557

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 108 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 146


>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Castanospermine
 pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Castanospermine
 pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45
 pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45
          Length = 556

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 107 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 145


>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
           The Substrate Sucrose
 pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
           The Substrate Sucrose
          Length = 556

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 107 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 145


>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
 pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
 pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
 pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
          Length = 556

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 107 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 145


>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
          Length = 557

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 108 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 146


>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
           Soaked With The Inhibitor Deoxynojirimycin
          Length = 584

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVG 160
           Q E    S A   NPY+D YY       GH+P  YP F G
Sbjct: 135 QHEWFKSSRASKDNPYRD-YYFWRDGKDGHEPNNYPSFFG 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.125    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,936,376
Number of Sequences: 62578
Number of extensions: 381158
Number of successful extensions: 626
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 14
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)