Query 019003
Match_columns 347
No_of_seqs 147 out of 211
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 2.2E-36 7.6E-41 231.9 5.2 62 174-235 2-64 (64)
2 2l1q_A Liver-expressed antimic 11.4 78 0.0027 22.5 0.9 12 26-37 2-13 (40)
3 3hde_A Lysozyme; antimicrobial 8.0 1.9E+02 0.0066 24.5 2.3 25 176-200 138-162 (165)
4 2anv_A Lysozyme; direct method 7.8 1.3E+02 0.0044 24.8 1.1 21 176-197 123-143 (146)
5 1xju_A Lysozyme; secreted inac 7.5 2.3E+02 0.0078 23.9 2.6 26 176-201 128-153 (163)
6 1b9w_A Protein (merozoite surf 6.9 86 0.003 25.7 -0.4 19 129-147 70-89 (95)
7 1xjt_A Lysozyme; open conforma 6.5 2.4E+02 0.0082 24.6 2.3 26 176-201 156-181 (191)
8 1qfq_B N36, 36-MER N-terminal 6.5 2.5E+02 0.0086 19.1 1.8 15 188-202 4-18 (35)
9 3gxv_A Replicative DNA helicas 5.6 3.5E+02 0.012 21.5 2.6 24 175-198 88-111 (123)
10 2k2w_A Recombination and DNA r 5.1 2E+02 0.0069 24.2 0.8 13 175-187 18-30 (118)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=2.2e-36 Score=231.93 Aligned_cols=62 Identities=61% Similarity=0.978 Sum_probs=58.5
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhCCCcchhchhHHHhhcCCCCCCcccccCC
Q 019003 174 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRFAKKTD 235 (347)
Q Consensus 174 eePvyVNaKQY~rIlrRRq~Rak~e~~~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFl~~~e 235 (347)
|+|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+|||||+++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999999875
No 2
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=11.37 E-value=78 Score=22.47 Aligned_cols=12 Identities=50% Similarity=1.251 Sum_probs=9.7
Q ss_pred cccccccCCCCC
Q 019003 26 EPWWRGVGYNSI 37 (347)
Q Consensus 26 ~PWW~~~g~~~v 37 (347)
-|.||++|.-++
T Consensus 2 TP~WR~vs~kP~ 13 (40)
T 2l1q_A 2 TPFWRGVSLRPI 13 (40)
T ss_dssp CCTTSSCSSBCT
T ss_pred cchhhhhcCCcc
Confidence 489999997774
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.97 E-value=1.9e+02 Score=24.51 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=19.8
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHh
Q 019003 176 PVYVNAKQYMGILRRRQARAKAELE 200 (347)
Q Consensus 176 PvyVNaKQY~rIlrRRq~Rak~e~~ 200 (347)
-+|++-|-..++.+||++..++=+.
T Consensus 138 W~~agGk~~~GLv~RR~~E~~l~l~ 162 (165)
T 3hde_A 138 WTYAGGKQWKGLMTRREIEREICLW 162 (165)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHTG
T ss_pred HhhcCCEEchhHHHHHHHHHHHHHc
Confidence 5677788999999999988766443
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=7.79 E-value=1.3e+02 Score=24.76 Aligned_cols=21 Identities=14% Similarity=-0.067 Sum_probs=16.6
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 019003 176 PVYVNAKQYMGILRRRQARAKA 197 (347)
Q Consensus 176 PvyVNaKQY~rIlrRRq~Rak~ 197 (347)
-+|++-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999987664
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.51 E-value=2.3e+02 Score=23.87 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.6
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHhh
Q 019003 176 PVYVNAKQYMGILRRRQARAKAELEK 201 (347)
Q Consensus 176 PvyVNaKQY~rIlrRRq~Rak~e~~~ 201 (347)
-+|++-|...++.+||++.+++=+.+
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 46677788999999999987766553
No 6
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=6.89 E-value=86 Score=25.71 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=15.9
Q ss_pred cccc-CCCCCCCcccccccc
Q 019003 129 IACA-SNPYQDPYYGGMMAA 147 (347)
Q Consensus 129 ia~~-~~py~Dpyygg~~aa 147 (347)
|.|. +.||..|||.|+|-+
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 6676 789999999999964
No 7
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=6.53 E-value=2.4e+02 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.5
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHhh
Q 019003 176 PVYVNAKQYMGILRRRQARAKAELEK 201 (347)
Q Consensus 176 PvyVNaKQY~rIlrRRq~Rak~e~~~ 201 (347)
-+|++-|...++.+||++.+.+=+.+
T Consensus 156 W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 156 FVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 45677788999999999987766543
No 8
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.47 E-value=2.5e+02 Score=19.14 Aligned_cols=15 Identities=40% Similarity=0.528 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhh
Q 019003 188 LRRRQARAKAELEKK 202 (347)
Q Consensus 188 lrRRq~Rak~e~~~k 202 (347)
-|||+.||...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888876655533
No 9
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=5.56 E-value=3.5e+02 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.7
Q ss_pred CceeechhhhHHHHHHHHHHHHHH
Q 019003 175 EPVYVNAKQYMGILRRRQARAKAE 198 (347)
Q Consensus 175 ePvyVNaKQY~rIlrRRq~Rak~e 198 (347)
-|--.|.+.|-+|+|.+..|.++-
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li 111 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLF 111 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566679999999999988887754
No 10
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=5.07 E-value=2e+02 Score=24.17 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=10.3
Q ss_pred CceeechhhhHHH
Q 019003 175 EPVYVNAKQYMGI 187 (347)
Q Consensus 175 ePvyVNaKQY~rI 187 (347)
-=||.|+|||.+.
T Consensus 18 tFvFLn~KQ~kkl 30 (118)
T 2k2w_A 18 VFLFLNAKQYKKL 30 (118)
T ss_dssp EEEESCSSTHHHH
T ss_pred EEEEeCHHHHHHH
Confidence 4689999999753
Done!