BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019006
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 20/321 (6%)
Query: 36 GPNGKQRTSSLESPI-------MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG 88
GP G T S +P+ L GH AV ++KF+P G +AS S D+ I +W +
Sbjct: 1 GPLGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY- 59
Query: 89 DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148
D K + GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K + H+++V C
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FC 118
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDND 207
C L+VSGS D + ++WD++ ++T P ++AV F+ I + D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 208 VKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266
++WD G+ TL + ++ + SP+G Y+L +D L +WD + +C+K
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLK 234
Query: 267 ILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325
GH++ EK + +S G K + +GS D +VYIW+ ++ I+ KL GHT V +
Sbjct: 235 TYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 326 FHATEPVIGSCS--SDKQIYL 344
H TE +I S + +DK I L
Sbjct: 293 CHPTENIIASAALENDKTIKL 313
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 76
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 77 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 133 FDESVRIWDV 142
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 174/331 (52%), Gaps = 21/331 (6%)
Query: 19 ARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHD 78
A+P S+ S P PN + L GH AV ++KF+P G +AS S D
Sbjct: 17 AQPTPSSSATQSKPTPVKPNYALK--------FTLAGHTKAVSSVKFSPNGEWLASSSAD 68
Query: 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138
+ I +W + D K + GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K +
Sbjct: 69 KLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASD 197
H+++V CC L+VSGS D + ++WD++ ++T P ++AV F+
Sbjct: 128 KGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMR 256
I + D ++WD G+ TL + ++ + SP+G Y+L +D L +WD
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Query: 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLP 315
+ +C+K GH++ EK + +S G K + +GS D +VYIW+ ++ I+ KL
Sbjct: 247 ----KGKCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Query: 316 GHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
GHT V + H TE +I S + +DK I L
Sbjct: 301 GHTDVVISTACHPTENIIASAALENDKTIKL 331
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 94
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 95 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 151 FDESVRIWDV 160
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 174/331 (52%), Gaps = 21/331 (6%)
Query: 19 ARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHD 78
A+P S+ S P PN + L GH AV ++KF+P G +AS S D
Sbjct: 15 AQPTPSSSATQSKPTPVKPNYALK--------FTLAGHTKAVSSVKFSPNGEWLASSSAD 66
Query: 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138
+ I +W + D K + GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K +
Sbjct: 67 KLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASD 197
H+++V CC L+VSGS D + ++WD++ ++T P ++AV F+
Sbjct: 126 KGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMR 256
I + D ++WD G+ TL + ++ + SP+G Y+L +D L +WD
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Query: 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLP 315
+ +C+K GH++ EK + +S G K + +GS D +VYIW+ ++ I+ KL
Sbjct: 245 ----KGKCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 316 GHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
GHT V + H TE +I S + +DK I L
Sbjct: 299 GHTDVVISTACHPTENIIASAALENDKTIKL 329
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 92
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 93 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 149 FDESVRIWDV 158
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 36 GPNGKQRTSSLESPI-------MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG 88
GP G S +P+ L GH AV ++KF+P G +AS S D+ I +W +
Sbjct: 1 GPLGSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY- 59
Query: 89 DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148
D K + GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K + H+++V C
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FC 118
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDND 207
C L+VSGS D + ++WD++ ++T P ++AV F+ I + D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 208 VKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266
++WD G+ TL + ++ + SP+G Y+L +D L +WD + +C+K
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLK 234
Query: 267 ILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325
GH++ EK + +S G K + +GS D +VYIW+ ++ I+ KL GHT V +
Sbjct: 235 TYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 326 FHATEPVIGSCS--SDKQIYL 344
H TE +I S + +DK I L
Sbjct: 293 CHPTENIIASAALENDKTIKL 313
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 76
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 77 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 133 FDESVRIWDV 142
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 36 GPNGKQRTSSLESPI-------MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG 88
G G T S +P+ L GH AV ++KF+P G +AS S D+ I +W +
Sbjct: 1 GAMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY- 59
Query: 89 DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148
D K + GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K + H+++V C
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FC 118
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDND 207
C L+VSGS D + ++WD++ ++T P ++AV F+ I + D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 208 VKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266
++WD G+ TL + ++ + SP+G Y+L +D L +WD + +C+K
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLK 234
Query: 267 ILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325
GH++ EK + +S G K + +GS D +VYIW+ ++ I+ KL GHT V +
Sbjct: 235 TYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 326 FHATEPVIGSCS--SDKQIYL 344
H TE +I S + +DK I L
Sbjct: 293 CHPTENIIASAALENDKTIKL 313
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 76
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 77 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 133 FDESVRIWDV 142
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 13/300 (4%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
+ L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W+
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWS 77
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
+D + ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRI 136
Query: 170 WDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD- 227
WD++ ++T P ++AV F+ I + D ++WD G+ TL +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
++ + SP+G Y+L +D L +WD + +C+K GH++ EK + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVT 250
Query: 288 GSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
G K + +GS D MVYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 220 MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279
TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD-- 73
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S D
Sbjct: 74 --VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 340 KQIYLGEI 347
+ + + ++
Sbjct: 132 ESVRIWDV 139
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIIS 117
V +KF+P G I + + D + LW + G C K + K K I T G I+S
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 118 ASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLVVSGS--DDGTAKLW 170
S D + W+++T + ++K+ H V +C P+ ++ S + +D T KLW
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---IIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 13/300 (4%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
+ L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W+
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWS 77
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
+D + ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRI 136
Query: 170 WDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD- 227
WD++ ++T P ++AV F+ I + D ++WD G+ TL +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
++ + SP+G Y+L +D L +WD + +C+K GH++ EK + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVT 250
Query: 288 GSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
G K + +GS D MVYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 220 MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279
TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD-- 73
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S D
Sbjct: 74 --VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 340 KQIYLGEI 347
+ + + ++
Sbjct: 132 ESVRIWDV 139
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D D+ LW + G C K + K K
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 297
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 298 ASAALENDKTIKLW 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 20/316 (6%)
Query: 41 QRTSSLESPI-------MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF 93
Q T S +P+ L GH AV ++KF+P G +AS S D+ I +W + D K
Sbjct: 17 QGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFE 75
Query: 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR 153
+ GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K + H+++V CC
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNP 134
Query: 154 GPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWD 212
L+VSGS D + ++WD++ ++T P ++AV F+ I + D ++WD
Sbjct: 135 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 213 LRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
G+ TL + ++ + SP+G Y+L +D L +WD + +C+K GH
Sbjct: 195 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 250
Query: 272 QHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330
++ EK + +S G K + +GS D +VYIW+ ++ I+ KL GHT V + H TE
Sbjct: 251 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 331 PVIGSCS--SDKQIYL 344
+I S + +DK I L
Sbjct: 309 NIIASAALENDKTIKL 324
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 87
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 88 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 144 FDESVRIWDV 153
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 168/314 (53%), Gaps = 13/314 (4%)
Query: 36 GPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV 95
GP G + L GH AV ++KF+P G +AS S D+ I +W + D K
Sbjct: 1 GPLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKT 59
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
+ GHK I D+ W++D + ++SAS DKTL+ WDV +GK +K + H+++V CC
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQS 118
Query: 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLR 214
L+VSGS D + ++WD++ ++T P ++AV F+ I + D ++WD
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 215 KGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273
G+ TL + ++ + SP+G Y+L +D L +WD + +C+K GH++
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN 234
Query: 274 NFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332
EK + +S G K + +GS D +VYIW+ ++ I+ KL GHT V + H TE +
Sbjct: 235 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 292
Query: 333 IGSCS--SDKQIYL 344
I S + +DK I L
Sbjct: 293 IASAALENDKTIKL 306
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 69
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 70 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 126 FDESVRIWDV 135
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 82
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVTGGK 255
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 312
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 75
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 76 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 132 FDESVRIWDV 141
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 183 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 242
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 299
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 300 ASAALENDKTIKLW 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 77
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVTGGK 250
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 70
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 71 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 127 FDESVRIWDV 136
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 294
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 295 ASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 77
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVTGGK 250
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 70
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 71 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 127 FDESVRIWDV 136
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 294
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 295 ASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 78
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVTGGK 251
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 308
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 71
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 72 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 128 FDESVRIWDV 137
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 179 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 238
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 295
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 296 ASAALENDKTIKLW 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 73
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKN--EKYCIFANFSVTGGK 246
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 303
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 66
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 67 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 123 FDESVRIWDV 132
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 174 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 233
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 234 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 290
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 291 ASAALENDKTIKLW 304
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 80
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGHKN--EKYCIFANFSVTGGK 253
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 73
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 74 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 130 FDESVRIWDV 139
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 297
Query: 159 VSGS--DDGTAKLW 170
S + +D T KL+
Sbjct: 298 ASAALENDKTIKLF 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S D+ I +W + D K + GHK I D+ W++D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 80
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGHKN--EKYCIFANFSVTGGK 253
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L ++ D + IW A + K + GH+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----AYDGKFEKTISGHKLGISD 73
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 74 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 130 FDESVRIWDV 139
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 297
Query: 159 VSGS--DDGTAKLW 170
S + +D T KL+
Sbjct: 298 ASAALENDKTIKLY 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 164/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +A+ S D+ I +W + D K + GHK I D+ W++D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 80
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++SAS DKTL+ WDV +GK +K + H+++V CC L+VSGS D + ++WD+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T P ++AV F+ I + D ++WD G+ TL + ++
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+L +D L +WD + +C+K GH++ EK + +S G K
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGHKN--EKYCIFANFSVTGGK 253
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL GH ++ + SP+G +L + D + IW A + K + GH+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG----AYDGKFEKTISGHKLGISD 73
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
WS D + + + S D+ + IWD +S + L L GH+ V F+ +I S S
Sbjct: 74 ----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 338 SDKQIYLGEI 347
D+ + + ++
Sbjct: 130 FDESVRIWDV 139
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDC-KNFMVLKGHK 100
T+S + L+ V +KF+P G I + + D + LW + G C K + K K
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLV 158
I T G I+S S D + W+++T + ++K+ H V +C P+ ++
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN---II 297
Query: 159 VSGS--DDGTAKLW 170
S + +D T KLW
Sbjct: 298 ASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 151/296 (51%), Gaps = 17/296 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
+ LTGH S+V+ + F+P G IAS S D+ + LW+ +G ++ L GH +++ + ++
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QHLQTLTGHSSSVWGVAFS 353
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
DG I SAS DKT++ W+ G+ ++ + H+S V S G + S SDD T KL
Sbjct: 354 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL 411
Query: 170 WDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM 228
W+ R +QT + V+FS I + D VK+W+ R G++ TL GH
Sbjct: 412 WN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 469
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
+ G++ SPDG + + D + +W+ + ++ L GH ++ +SPDG
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGH----SSSVRGVAFSPDG 520
Query: 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ + S D+ V +W+ ++L L GH+ SV F I S SSDK + L
Sbjct: 521 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 147/296 (49%), Gaps = 17/296 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
+ LTGH S+V+ + F+P G IAS S D+ + LW+ +G L GH +++ + ++
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFS 189
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
DG I SAS DKT++ W+ G+ ++ + H+S V S G + S SDD T KL
Sbjct: 190 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL 247
Query: 170 WDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM 228
W+ R +QT + V+F I + D VK+W+ R G++ TL GH
Sbjct: 248 WN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 305
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
+ G++ SPDG + + D + +W+ + ++ L GH ++ +SPDG
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRN-----GQHLQTLTGH----SSSVWGVAFSPDG 356
Query: 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ + S D+ V +W+ ++L L GH+ SV F I S S DK + L
Sbjct: 357 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 145/293 (49%), Gaps = 17/293 (5%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L H S+V + F+P G IAS S D+ + LW+ +G L GH +++ + ++ DG
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDG 69
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
I SAS DKT++ W+ G+ ++ + H+S V S G + S SDD T KLW+
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWN- 126
Query: 173 RQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
R +QT + V+FS I + D VK+W+ R G++ TL GH + G
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 185
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
++ SPDG + + D + +W+ + ++ L GH ++ +SPDG +
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGH----SSSVRGVAFSPDGQTI 236
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ S D+ V +W+ ++L L GH+ SVN F I S S DK + L
Sbjct: 237 ASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 146/296 (49%), Gaps = 17/296 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
+ LTGH S+V+ + F+P G IAS S D+ + LW+ +G L GH +++ + ++
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFS 107
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
DG I SAS DKT++ W+ G+ ++ + H+S V S G + S SDD T KL
Sbjct: 108 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKL 165
Query: 170 WDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM 228
W+ R +QT + V+FS I + D VK+W+ R G++ TL GH
Sbjct: 166 WN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 223
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
+ G++ SPDG + + D + +W+ + ++ L GH + + PDG
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVNGVAFR----PDG 274
Query: 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ + S D+ V +W+ ++L L GH+ SV F I S S DK + L
Sbjct: 275 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 16/256 (6%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
+ LTGH S+V+ + F+P G IAS S D+ + LW+ +G L GH +++ + ++
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFS 394
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
DG I SAS DKT++ W+ G+ ++ + H+S V S + S SDD T KL
Sbjct: 395 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVKL 452
Query: 170 WDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM 228
W+ R +QT + V+FS I + D VK+W+ R G++ TL GH
Sbjct: 453 WN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 510
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
+ G++ SPDG + + D + +W+ + ++ L GH ++ +SPDG
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGH----SSSVWGVAFSPDG 561
Query: 289 SKVTAGSSDRMVYIWD 304
+ + SSD+ V +W+
Sbjct: 562 QTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 131/274 (47%), Gaps = 33/274 (12%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTD 111
L GH +V + F+ +G ++AS S D I LW G +C + GH + + + +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPN 203
Query: 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW- 170
G I+SAS DKT++ W+V+TG +K H +V P++ G L+ S S+D T ++W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWV 262
Query: 171 --------DMRQ-RGAIQTFPDKYQITAVSFSDASDK-----------IYTGGIDNDVKV 210
++R+ R ++ + + S S+A+ + +G D +K+
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ G MTL GH + + G+ G ++L+ D L +WD + RC+K L
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNA 378
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H+H F +L + V GS D+ V +W+
Sbjct: 379 HEH-FVTSL---DFHKTAPYVVTGSVDQTVKVWE 408
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 149/337 (44%), Gaps = 37/337 (10%)
Query: 36 GPNGKQRTSSLESP----IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDC 90
GP G++R P L+GH+S V + F+P +V+ S S D I +W GD
Sbjct: 83 GPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 142
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150
+ LKGH +++ D+ + G + S S D T++ WD + + I+ M H+ V+S
Sbjct: 143 ER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVK 209
G +VS S D T K+W+++ ++TF + + V + I + D V+
Sbjct: 201 MPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSY--------------------LLTNGMDCK 249
VW + E L+ H+ ++ +S +P+ SY LL+ D
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309
+ +WD+ C+ L GH + L G G + + + D+ + +WD ++R
Sbjct: 320 IKMWDV----STGMCLMTLVGHDNWVRGVLFHSG----GKFILSCADDKTLRVWDYKNKR 371
Query: 310 ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346
+ L H V FH T P + + S D+ + + E
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHW 108
+ TGH+ V ++ N GT+IAS S+D+ + +W V +CK L+ H++ + + W
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHRHVVECISW 284
Query: 109 TTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148
+ S ++S S DKT++ WDV TG + + H+++V
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDND 207
G ++S +DD T ++WD + + ++T ++ +T++ F + + TG +D
Sbjct: 345 L-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403
Query: 208 VKVWDLR 214
VKVW+ R
Sbjct: 404 VKVWECR 410
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 192 FSDASDKIYTGG---IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
++A ++ +GG D K W R E L GH+ +T + P S +++ D
Sbjct: 72 LNEAKEEFTSGGPLGQKRDPKEWIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDA 130
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
+ +WD + + L+GH + + + G + + S+D + +WD
Sbjct: 131 TIKVWDYETGDFE----RTLKGHTDSVQD----ISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ + GH +V+ I S S DK I + E+
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 54/303 (17%)
Query: 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDL 106
L GH V ++ AG ++ S S D+ + W + GD + F V KGH + + D
Sbjct: 13 LEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
T DG+ +SAS DKTLR WDV TG+ ++ H S V S ++ +++SGS D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKT 130
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSF------SDASDKIYTGGIDNDVKVWDLRKGEVSM 220
K+W ++ + ++ V D S I + G D VK W+L + ++
Sbjct: 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD------MRPYAPQNRCVKI------- 267
GH I ++ SPDG+ + + G D ++ +W+ M + Q+ +
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 268 ---------------------------LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
G+ E + + WS DG + AG +D ++
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 301 YIW 303
+W
Sbjct: 311 RVW 313
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 96 LKGHKNAILDLHWTTDGSQ---IISASPDKTLRAW-----DVETGKQIKKMAEHNSFVNS 147
L+GH + L T Q ++SAS DKTL +W D + G ++ H+ V
Sbjct: 13 LEGHNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206
C + G +S S D T +LWD+ Q F K + +V + I +G D
Sbjct: 71 CTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP------DGSYLLTNGMDCKLCIWDMRPYAP 260
+KVW + KG+ TL GH D ++ + + P D +++ G D + W++ +
Sbjct: 130 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
+ + GH N N L SPDG+ + + D + +W+ +++ +Y L
Sbjct: 189 EADFI----GHNSNI--NTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 15/213 (7%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----DMRQRGAIQTFPDKYQITAVSFSDA 195
HN +V S S P L++S S D T W D + +++F I +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLT 74
Query: 196 SDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+D Y + D +++WD+ GE GH+ + + + S +++ D + +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSSDRMVYIWDTTSRRIL 311
++ +C+ L GH + + D VT + +D+MV W+ +I
Sbjct: 135 TIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH ++N +I S D +I L
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 54/303 (17%)
Query: 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDL 106
L GH V ++ AG ++ S S D+ + W + GD + F V KGH + + D
Sbjct: 13 LEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
T DG+ +SAS DKTLR WDV TG+ ++ H S V S ++ +++SGS D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKT 130
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSF------SDASDKIYTGGIDNDVKVWDLRKGEVSM 220
K+W ++ + ++ V D S I + G D VK W+L + ++
Sbjct: 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD------MRPYAPQNRCVKI------- 267
GH I ++ SPDG+ + + G D ++ +W+ M + Q+ +
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 268 ---------------------------LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
G+ E + + WS DG + AG +D ++
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 301 YIW 303
+W
Sbjct: 311 RVW 313
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 96 LKGHKNAILDLHWTTDGSQ---IISASPDKTLRAW-----DVETGKQIKKMAEHNSFVNS 147
L+GH + L T Q ++SAS DKTL +W D + G ++ H+ V
Sbjct: 13 LEGHNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206
C + G +S S D T +LWD+ Q F K + +V + I +G D
Sbjct: 71 CTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP------DGSYLLTNGMDCKLCIWDMRPYAP 260
+KVW + KG+ TL GH D ++ + + P D +++ G D + W++ +
Sbjct: 130 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
+ + GH N N L SPDG+ + + D + +W+ +++ +Y L
Sbjct: 189 EADFI----GHNSNI--NTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 15/213 (7%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----DMRQRGAIQTFPDKYQITAVSFSDA 195
HN +V S S P L++S S D T W D + +++F I +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLT 74
Query: 196 SDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+D Y + D +++WD+ GE GH+ + + + S +++ D + +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSSDRMVYIWDTTSRRIL 311
++ +C+ L GH + + D VT + +D+MV W+ +I
Sbjct: 135 TIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH ++N +I S D +I L
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 54/303 (17%)
Query: 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDL 106
L GH V ++ AG ++ S S D+ + W + GD + F V KGH + + D
Sbjct: 7 LEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
T DG+ +SAS DKTLR WDV TG+ ++ H S V S ++ +++SGS D T
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKT 124
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSF------SDASDKIYTGGIDNDVKVWDLRKGEVSM 220
K+W ++ + ++ V D S I + G D VK W+L + ++
Sbjct: 125 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD------MRPYAPQNRCVKI------- 267
GH I ++ SPDG+ + + G D ++ +W+ M + Q+ +
Sbjct: 185 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 244
Query: 268 ---------------------------LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
G+ E + + WS DG + AG +D ++
Sbjct: 245 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 301 YIW 303
+W
Sbjct: 305 RVW 307
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 96 LKGHKNAILDLHWTTDGSQ---IISASPDKTLRAW-----DVETGKQIKKMAEHNSFVNS 147
L+GH + L T Q ++SAS DKTL +W D + G ++ H+ V
Sbjct: 7 LEGHNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206
C + G +S S D T +LWD+ Q F K + +V + I +G D
Sbjct: 65 CTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP------DGSYLLTNGMDCKLCIWDMRPYAP 260
+KVW + KG+ TL GH D ++ + + P D +++ G D + W++ +
Sbjct: 124 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
+ + GH N N L SPDG+ + + D + +W+ +++ +Y L
Sbjct: 183 EADFI----GHNSNI--NTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 15/213 (7%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----DMRQRGAIQTFPDKYQITAVSFSDA 195
HN +V S S P L++S S D T W D + +++F I +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLT 68
Query: 196 SDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+D Y + D +++WD+ GE GH+ + + + S +++ D + +W
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSSDRMVYIWDTTSRRIL 311
++ +C+ L GH + + D VT + +D+MV W+ +I
Sbjct: 129 TIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH ++N +I S D +I L
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 54/303 (17%)
Query: 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDL 106
L GH V ++ AG ++ S S D+ + W + GD + F V KGH + + D
Sbjct: 13 LEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
T DG+ +SAS DKTLR WDV TG+ ++ H S V S ++ +++SGS D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKT 130
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSF------SDASDKIYTGGIDNDVKVWDLRKGEVSM 220
K+W ++ + ++ V D S I + G D VK W+L + ++
Sbjct: 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD------MRPYAPQNRCVKI------- 267
GH I ++ SPDG+ + + G D ++ +W+ M + Q+ +
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 268 ---------------------------LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
G+ E + + WS DG + AG +D ++
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 301 YIW 303
+W
Sbjct: 311 RVW 313
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 96 LKGHKNAILDLHWTTDGSQ---IISASPDKTLRAW-----DVETGKQIKKMAEHNSFVNS 147
L+GH + L T Q ++SAS DKTL +W D + G ++ H+ V
Sbjct: 13 LEGHNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206
C + G +S S D T +LWD+ Q F K + +V + I +G D
Sbjct: 71 CTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP------DGSYLLTNGMDCKLCIWDMRPYAP 260
+KVW + KG+ TL GH D ++ + + P D +++ G D + W++ +
Sbjct: 130 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
+ + GH N N L SPDG+ + + D + +W+ +++ +Y L
Sbjct: 189 EADFI----GHNSNI--NTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 15/213 (7%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----DMRQRGAIQTFPDKYQITAVSFSDA 195
HN +V S S P L++S S D T W D + +++F I +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLT 74
Query: 196 SDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+D Y + D +++WD+ GE GH+ + + + S +++ D + +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSSDRMVYIWDTTSRRIL 311
++ +C+ L GH + + D VT + +D+MV W+ +I
Sbjct: 135 TIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH ++N +I S D +I L
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 54/303 (17%)
Query: 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDL 106
L GH V ++ AG ++ S S D+ + W + GD + F V KGH + + D
Sbjct: 13 LEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
T DG+ +SAS DKTLR WDV TG+ ++ H S V S ++ +++SGS D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKT 130
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSF------SDASDKIYTGGIDNDVKVWDLRKGEVSM 220
K+W ++ + ++ V D S I + G D VK W+L + ++
Sbjct: 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD------MRPYAPQNRCVKI------- 267
GH I ++ SPDG+ + + G D ++ +W+ M + Q+ +
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 268 ---------------------------LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
G+ E + + WS DG + AG +D ++
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 301 YIW 303
+W
Sbjct: 311 RVW 313
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 96 LKGHKNAILDLHWTTDGSQ---IISASPDKTLRAW-----DVETGKQIKKMAEHNSFVNS 147
L+GH + L T Q ++SAS DKTL +W D + G ++ H+ V
Sbjct: 13 LEGHNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206
C + G +S S D T +LWD+ Q F K + +V + I +G D
Sbjct: 71 CTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP------DGSYLLTNGMDCKLCIWDMRPYAP 260
+KVW + KG+ TL GH D ++ + + P D +++ G D + W++ +
Sbjct: 130 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
+ + GH N N L SPDG+ + + D + +W+ +++ +Y L
Sbjct: 189 EADFI----GHNSNI--NTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 58/216 (26%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT--- 109
GH+S V ++ + ++I SGS D+ I +W + G C L GH + + +
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNE 160
Query: 110 ---TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
D IISA DK ++AW++ + HNS +N+ S G L+ S DG
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGE 219
Query: 167 AKLWDMRQRGAIQTF------------PDKYQITAVS----------------------- 191
LW++ + A+ T P++Y + A +
Sbjct: 220 IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 192 -FSDASD-------------KIYTGGIDNDVKVWDL 213
+S A++ ++ G DN ++VW +
Sbjct: 280 GYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 15/213 (7%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----DMRQRGAIQTFPDKYQITAVSFSDA 195
HN +V S S P L++S S D T W D + +++F I +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLT 74
Query: 196 SDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+D Y + D +++WD+ GE GH+ + + + S +++ D + +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSSDRMVYIWDTTSRRIL 311
++ +C+ L GH + + D VT + +D+MV W+ +I
Sbjct: 135 TIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH ++N +I S D +I L
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 131/304 (43%), Gaps = 56/304 (18%)
Query: 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDL 106
L GH V ++ AG ++ S S D+ + W + GD + F V KGH + + D
Sbjct: 13 LEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
T DG+ +SAS DKTLR WDV TG+ ++ H S V S ++ ++SGS D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX-IISGSRDKT 130
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSF------SDASDKIYTGGIDNDVKVWDLRKGEVSM 220
K+W ++ + ++ V D S I + G D VK W+L + ++
Sbjct: 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR-----------------PYAPQNR 263
GH I ++ SPDG+ + + G D ++ +W++ ++P NR
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSP-NR 249
Query: 264 C---------VKILE---------------GHQHNFEKNLLKCGWSPDGSKVTAGSSDRM 299
+K+ G+ E + + WS DG + AG +D +
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 300 VYIW 303
+ +W
Sbjct: 310 IRVW 313
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 27/237 (11%)
Query: 96 LKGHKNAILDLHWTTDGSQ---IISASPDKTLRAW-----DVETGKQIKKMAEHNSFVNS 147
L+GH + L T Q ++SAS DKTL +W D + G ++ H+ V
Sbjct: 13 LEGHNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206
C + G +S S D T +LWD+ Q F K + +V + I +G D
Sbjct: 71 CTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP------DGSYLLTNGMDCKLCIWDMRPYAP 260
+KVW + KG+ TL GH D ++ + + P D +++ G D + W++ +
Sbjct: 130 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
+ + GH N N L SPDG+ + + D + +W+ +++ Y L
Sbjct: 189 EADFI----GHNSNI--NTLTA--SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 15/213 (7%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----DMRQRGAIQTFPDKYQITAVSFSDA 195
HN +V S S P L++S S D T W D + +++F I +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLT 74
Query: 196 SDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+D Y + D +++WD+ GE GH+ + + + S +++ D + +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSSDRMVYIWDTTSRRIL 311
++ +C+ L GH + + D VT + +D+ V W+ +I
Sbjct: 135 TIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH ++N +I S D +I L
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 123/273 (45%), Gaps = 40/273 (14%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTD 111
L GH V++ + +I SGS DR + +W+ G+C L GH + + +H
Sbjct: 155 LVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMH--LH 208
Query: 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
+++S S D TLR WD+ETG+ + + H + V C G VVSG+ D K+WD
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRR-VVSGAYDFMVKVWD 265
Query: 172 MRQRGAIQTFPDKYQITAVSFSDASDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
+ T T +S D I+ +G +D ++VWD+ G TL GHQ +
Sbjct: 266 PETETCLHTLQGH---TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG---HQH-----NFEKNLLK 281
+GM L + L++ D + IWD++ +C++ L+G HQ F KN
Sbjct: 323 SGMELKDN--ILVSGNADSTVKIWDIKT----GQCLQTLQGPNKHQSAVTCLQFNKNF-- 374
Query: 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314
V S D V +WD + + L
Sbjct: 375 ---------VITSSDDGTVKLWDLKTGEFIRNL 398
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 21/232 (9%)
Query: 88 GDCKNFMVLKGHKNAILD-LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN 146
G+ K+ VLKGH + ++ L + G++I+S S D TL+ W TGK ++ + H V
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 163
Query: 147 SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206
S S+ +++SGS D T K+W+ I T + T ++ +G D
Sbjct: 164 S---SQMRDNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHEKRVVSGSRDA 219
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR-CV 265
++VWD+ G+ L GH + + DG +++ D + +WD P+ C+
Sbjct: 220 TLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWD-----PETETCL 272
Query: 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317
L+GH + DG V +GS D + +WD + ++ L GH
Sbjct: 273 HTLQGHTNRVY------SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 23/215 (10%)
Query: 133 KQIKKMAEHNSFVNSC---CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA 189
K K + H+ V +C C +R +VSGSDD T K+W ++T
Sbjct: 109 KSPKVLKGHDDHVITCLQFCGNR-----IVSGSDDNTLKVWSAVTGKCLRTLVG--HTGG 161
Query: 190 VSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
V S D I +G D +KVW+ GE TL GH + M L +++ D
Sbjct: 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDA 219
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
L +WD+ +C+ +L GH ++C DG +V +G+ D MV +WD +
Sbjct: 220 TLRVWDIET----GQCLHVLMGHV-----AAVRCV-QYDGRRVVSGAYDFMVKVWDPETE 269
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343
L+ L GHT V F V GS + +++
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 304
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILD 105
E+ + L GH + VY+++F+ G + SGS D I +W V G+C L GH++
Sbjct: 269 ETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSG 324
Query: 106 LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165
+ + ++S + D T++ WD++TG+ ++ + N ++ + V++ SDDG
Sbjct: 325 ME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 382
Query: 166 TAKLWDMR 173
T KLWD++
Sbjct: 383 TVKLWDLK 390
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 28/266 (10%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS 119
+ ++ F+P G +A+G+ DR I +W + + K M+L+GH+ I L + G +++S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 120 PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179
D+T+R WD+ TG+ ++ + V + S + +GS D ++WD ++
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243
Query: 180 TFPD--------KYQITAVSFSDASDKIYTGGIDNDVKVWDLRK------------GEVS 219
K + +V F+ + +G +D VK+W+L+ G
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 220 MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279
+T GH+D + ++ + + Y+L+ D + WD + P + +L+GH+++
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP----LLMLQGHRNSVISVA 359
Query: 280 LKCGWS--PDGSKVTAGSSDRMVYIW 303
+ G S P+ + GS D IW
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIW 385
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 30/239 (12%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHW 108
+M+L GH+ +Y++ + P+G + SGS DR + +W + G C + L
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS--LTLSIEDGVTTVAVS 215
Query: 109 TTDGSQIISASPDKTLRAWDVETGKQIKKMAE-------HNSFVNSCCPSRRGPPLVVSG 161
DG I + S D+ +R WD ETG ++++ H V S +R G VVSG
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSG 274
Query: 162 SDDGTAKLWDMRQRG-------------AIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208
S D + KLW+++ + K + +V+ + + I +G D V
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Query: 209 KVWDLRKGEVSMTLQGHQDMI------TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261
WD + G + LQGH++ + G SL P+ + T DCK IW + AP
Sbjct: 335 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 19/229 (8%)
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
++ DG + + + D+ +R WD+E K + + H + S G LV SGS D T
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTV 189
Query: 168 KLWDMRQRGAIQTFPDKYQITAVSFSDASDK-IYTGGIDNDVKVWDLRKGEVSMTLQ--- 223
++WD+R T + +T V+ S K I G +D V+VWD G + L
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 249
Query: 224 ----GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR-------PYAPQNRCVKILEGHQ 272
GH+D + + + DG +++ +D + +W+++ P + ++
Sbjct: 250 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321
+F +L + + + +GS DR V WD S L L GH SV
Sbjct: 310 KDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246
I +V FS + TG D +++WD+ ++ M LQGH+ I + P G L++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKVTAGSSDRMVYIWDT 305
D + IWD+R +C L + E + SP DG + AGS DR V +WD+
Sbjct: 186 DRTVRIWDLR----TGQCSLTL-----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 306 TSRRILYKL-------PGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ ++ +L GH SV VF + S S D+ + L
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 14/235 (5%)
Query: 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR 153
+V++ H +A+ ++ DG +I S DKTL+ + ETG+++ ++ H V CC
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV-LCCAFST 673
Query: 154 GPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIY--TGGIDNDVKV 210
+ + S D K+W+ + T+ + Q+ F+++S + TG D +K+
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI--- 267
WDL + E T+ GH + + SPD L + D L +WD A + + + +
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS-ANERKSINVKQF 792
Query: 268 ---LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG 319
LE Q + E + C WS DG+++ + ++ ++++D + +L ++ HTG
Sbjct: 793 FLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEI--HTG 844
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 24/311 (7%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT 110
+++ H AVY F+ G IAS D+ + ++ + + +K H++ +L ++T
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG-EKLLEIKAHEDEVLCCAFST 673
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV-SGSDDGTAKL 169
D I + S DK ++ W+ TG+ + EH+ VN C + L++ +GS D KL
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 170 WDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWD---------LRKGEVS 219
WD+ Q+ T F + FS + + D +K+WD + +
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 220 MTLQGHQD----MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+ L+ Q+ ++ S S DG+ ++ + K+ ++D+ +I GH
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSGLLG---EIHTGHHSTI 849
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335
+ C +SP S V +W+T SR + GH V+ +F +
Sbjct: 850 Q----YCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLT 905
Query: 336 CSSDKQIYLGE 346
S D+ I L E
Sbjct: 906 SSDDQTIRLWE 916
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 22/293 (7%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114
GH S V+ + F+P G+ + S D+ I LW CKN V+ + +D+ + +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQE---VDVVFQENEVM 942
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL--VVSGSDDGTAKLWDM 172
+++ + L+ + TG QI + E V+ CC S P L + G ++G ++ ++
Sbjct: 943 VLAVDHIRRLQLINGRTG-QIDYLTEAQ--VSCCCLS---PHLQYIAFGDENGAIEILEL 996
Query: 173 RQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
Q+ F K + + F+ + + D +++VW+ + + + L+GHQ+ +
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKD 1055
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
L + S LL+ D + +W++ + V HQ +L C S D +K
Sbjct: 1056 FRLLKN-SRLLSWSFDGTVKVWNIITGNKEKDFV----CHQ----GTVLSCDISHDATKF 1106
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
++ S+D+ IW L++L GH G V S F ++ + + +I +
Sbjct: 1107 SSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 13/199 (6%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI 115
H+ V+ ++F + S S D +I +W+ D + L+GH+ + D + S++
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD--KCIFLRGHQETVKDFRLLKN-SRL 1064
Query: 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
+S S D T++ W++ TG + K H V SC S S S D TAK+W
Sbjct: 1065 LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFS-STSADKTAKIWSFDLL 1123
Query: 176 GAIQTFPDKYQITAVS-FSDASDKIYTGGIDNDVKVWDLRKGEV-----SMTLQG---HQ 226
+ S FS S + TG + ++++W++ GE+ ++ +G H
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 227 DMITGMSLSPDGSYLLTNG 245
+T + SPDG L++ G
Sbjct: 1184 GWVTDLCFSPDGKMLISAG 1202
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 123/318 (38%), Gaps = 51/318 (16%)
Query: 71 VIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129
++A+GS D + LW ++ +C+N M GH N++ ++ D + S S D TL+ WD
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 130 ETGKQIKKMAEHNSFVN------------SCCP-SRRGPPLVVSGSDDGTAKLWDMRQRG 176
+ + K + F+N CC S G ++V+ + L+D+ G
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN--KIFLFDIHTSG 836
Query: 177 AIQTFPDKYQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGEVSMTLQGHQDMITGMS 233
+ + T + + D S + + + V++W+ +GH + G+
Sbjct: 837 LLGEIHTGHHST-IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVM 895
Query: 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQN-------------------------RCVKIL 268
SPDGS LT+ D + +W+ + + R ++++
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Query: 269 EGHQHNF----EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNES 324
G E + C SP + G + + I + + RI H +V
Sbjct: 956 NGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHI 1015
Query: 325 VFHATEPVIGSCSSDKQI 342
F A E + S S D +I
Sbjct: 1016 QFTADEKTLISSSDDAEI 1033
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 20/205 (9%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV--HGDCKNFMVLKGHKNAILDLHW 108
+ L GHQ V + + + S S D + +W++ K+F+ H+ +L
Sbjct: 1044 IFLRGHQETVKDFRL-LKNSRLLSWSFDGTVKVWNIITGNKEKDFVC---HQGTVLSCDI 1099
Query: 109 TTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
+ D ++ S S DKT + W + + ++ HN V C L+ +G D+G +
Sbjct: 1100 SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR-CSAFSVDSTLLATGDDNGEIR 1158
Query: 169 LWDMRQRGAIQTFPDKYQ---------ITAVSFS-DASDKIYTGGIDNDVKVWDLRKGEV 218
+W++ + + +T + FS D I GG +K W++ GE
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGY---IKWWNVVTGES 1215
Query: 219 SMTLQGHQDMITGMSLSPDGSYLLT 243
S T + + + +SPD +T
Sbjct: 1216 SQTFYTNGTNLKKIHVSPDFKTYVT 1240
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNA----- 102
P+ L GH V F+ T++A+G + +I +W+V +G+ + + A
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 103 -ILDLHWTTDGSQIISASPDKTLRAWDVETGK 133
+ DL ++ DG +ISA ++ W+V TG+
Sbjct: 1185 WVTDLCFSPDGKMLISAGG--YIKWWNVVTGE 1214
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 132/305 (43%), Gaps = 53/305 (17%)
Query: 53 LTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLH 107
L GH V + P +I S S D+ I +W + D N+ + L+GH + + D+
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
++DG +S S D TLR WD+ TG ++ H V S S +VSGS D T
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTI 152
Query: 168 KLWDMRQ--RGAIQTFPDKYQITAVSFSDASDK--IYTGGIDNDVKVWDLRKGEVSMTLQ 223
KLW+ + +Q ++ V FS S I + G D VKVW+L ++
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 224 GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP-----------------YAPQNR--- 263
GH + +++SPDGS + G D + +WD+ ++P NR
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRYWL 271
Query: 264 ------CVKI--LEGH--QHNFEKNLL---------KC---GWSPDGSKVTAGSSDRMVY 301
+KI LEG ++ ++ +C WS DG + AG +D +V
Sbjct: 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 302 IWDTT 306
+W T
Sbjct: 332 VWQVT 336
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 19/231 (8%)
Query: 96 LKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDV---ETGKQI--KKMAEHNSFVNSCC 149
LKGH + + T I+SAS DKT+ W + ET I + + H+ FV+
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDV 208
S G +SGS DGT +LWD+ + F + + +V+FS + +I +G D +
Sbjct: 94 ISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 209 KVWD-LRKGEVSMTLQGHQDMITGMSLSPDGS--YLLTNGMDCKLCIWDMRPYAPQNRCV 265
K+W+ L + ++ + H + ++ + SP+ S +++ G D + +W++ + +
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316
GH + SPDGS +G D +WD + LY L G
Sbjct: 213 ----GHTGYLNTVTV----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 53/216 (24%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
GH V ++ F+ I SGS D+ I LW+ G CK + + H + + ++ +
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 113 SQ--IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
S I+S DK ++ W++ K H ++N+ S G L SG DG A LW
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 171 DMRQRGAIQTF------------PDKY--------------------------------- 185
D+ + + T P++Y
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302
Query: 186 -----QITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
Q T++++S ++ G DN V+VW + G
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 221 TLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDM-RPYAPQNRCVKILEGHQHNFEKN 278
TL+GH +T ++ +P +L+ D + +W + R + L GH H
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338
++ S DG +GS D + +WD T+ + GHT V F + I S S
Sbjct: 93 VI----SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 339 DKQIYL 344
DK I L
Sbjct: 149 DKTIKL 154
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 132/305 (43%), Gaps = 53/305 (17%)
Query: 53 LTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLH 107
L GH V + P +I S S D+ I +W + D N+ + L+GH + + D+
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
++DG +S S D TLR WD+ TG ++ H V S S +VSGS D T
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTI 129
Query: 168 KLWDMRQ--RGAIQTFPDKYQITAVSFSDASDK--IYTGGIDNDVKVWDLRKGEVSMTLQ 223
KLW+ + +Q ++ V FS S I + G D VKVW+L ++
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 224 GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP-----------------YAPQNR--- 263
GH + +++SPDGS + G D + +WD+ ++P NR
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRYWL 248
Query: 264 ------CVKI--LEGH--QHNFEKNLL---------KC---GWSPDGSKVTAGSSDRMVY 301
+KI LEG ++ ++ +C WS DG + AG +D +V
Sbjct: 249 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 302 IWDTT 306
+W T
Sbjct: 309 VWQVT 313
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 19/231 (8%)
Query: 96 LKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDV---ETGKQI--KKMAEHNSFVNSCC 149
LKGH + + T I+SAS DKT+ W + ET I + + H+ FV+
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDV 208
S G +SGS DGT +LWD+ + F + + +V+FS + +I +G D +
Sbjct: 71 ISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 209 KVWD-LRKGEVSMTLQGHQDMITGMSLSPDGS--YLLTNGMDCKLCIWDMRPYAPQNRCV 265
K+W+ L + ++ + H + ++ + SP+ S +++ G D + +W++ + +
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316
GH + SPDGS +G D +WD + LY L G
Sbjct: 190 ----GHTGYLNTVTV----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 53/216 (24%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
GH V ++ F+ I SGS D+ I LW+ G CK + + H + + ++ +
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 113 SQ--IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
S I+S DK ++ W++ K H ++N+ S G L SG DG A LW
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 171 DMRQRGAIQTF------------PDKY--------------------------------- 185
D+ + + T P++Y
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 186 -----QITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
Q T++++S ++ G DN V+VW + G
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 221 TLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDM-RPYAPQNRCVKILEGHQHNFEKN 278
TL+GH +T ++ +P +L+ D + +W + R + L GH H
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338
++ S DG +GS D + +WD T+ + GHT V F + I S S
Sbjct: 70 VI----SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 339 DKQIYL 344
DK I L
Sbjct: 126 DKTIKL 131
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 69/312 (22%)
Query: 53 LTGHQSAVYTM---KFNPAGTVIASGSHDRDIFLWHVHGD-----CKNFM---VLKGHKN 101
LTGH+ V ++ + T + S S D+ + W + D C + L+GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVV 159
+ D+ + +G+ +SAS D +LR W+++ G+ K H V S P R +V
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ---IV 125
Query: 160 SGSDDGTAKLWDMR-------QRGAIQTFPDKYQITAVSFSDASDK--IYTGGIDNDVKV 210
SG D ++W+++ RGA + ++ V FS + D I +GG DN VKV
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTDW-----VSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM--------------- 255
WDL G + L+GH + +T +++SPDGS ++ D +WD+
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 256 --------------------RPYAPQNRCVKILEGHQHNFEKNLL-KC---GWSPDGSKV 291
R + +N+ + + +H K ++ +C WS DGS +
Sbjct: 241 NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTL 300
Query: 292 TAGSSDRMVYIW 303
+G +D ++ +W
Sbjct: 301 YSGYTDNVIRVW 312
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 96 LKGHKNAILDL---HWTTDGSQIISASPDKTLRAW---------DVETGKQIKKMAEHNS 143
L GH+ + L ++++S S DKTL +W + G +++ H++
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT--FPDKYQITAVSFSDASDKIYT 201
FV+ S G VS S D + +LW++ Q G Q + +V+FS + +I +
Sbjct: 69 FVSDVALSNNGN-FAVSASWDHSLRLWNL-QNGQCQYKFLGHTKDVLSVAFSPDNRQIVS 126
Query: 202 GGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSP--DGSYLLTNGMDCKLCIWDMRP 257
GG DN ++VW++ KGE TL H D ++ + SP D +++ G D + +WD+
Sbjct: 127 GGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL-- 183
Query: 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314
R V L+GH + + SPDGS + D + +WD T L ++
Sbjct: 184 --ATGRLVTDLKGHTNYVTSVTV----SPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 137 KMAEHNSFVNS-CCP-SRRGPPLVVSGSDDGTAKLW----DMRQRGAIQTFPDKYQ---- 186
++ H +V S CP + VVS S D T W D PD+
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 187 --ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTN 244
++ V+ S+ + + D+ +++W+L+ G+ GH + ++ SPD +++
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 245 GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
G D L +W+++ C+ L H + ++ S D + +G D +V +WD
Sbjct: 128 GRDNALRVWNVK-----GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 305 TTSRRILYKLPGHTGSV 321
+ R++ L GHT V
Sbjct: 183 LATGRLVTDLKGHTNYV 199
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 222 LQGHQDMITGMSL--SPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCV-----KILEGHQH 273
L GH+ +T ++ +P+ + +++ D L W P + C + LEGH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 274 NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
L S +G+ + S D + +W+ + + YK GHT V F
Sbjct: 69 FVSDVAL----SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 27/229 (11%)
Query: 52 LLTGHQSAV------YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN------FMVLKGH 99
+L GH V ++ K N V+ SGS D+ + +W ++ + +N L GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV 159
+ + DL + + IS+S DKTLR WD+ TG K+ H S V S S ++
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 160 SGSDDGTAKLWDMRQRGAIQTFPDKYQ---ITAVSFS---DASDKIY-------TGGIDN 206
+G++ KLW++ + + ++ V +S +++K+ + G D
Sbjct: 136 AGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255
+KVW+ ++ T + H+ + +S+SP+G Y+ T G D KL IWD+
Sbjct: 195 RLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 32/215 (14%)
Query: 111 DGSQIISASPDKTLRAWDVETGKQI-------KKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
D +IS S DKT+ W + +Q K + HN FV+ S+ +S S
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FAISSSW 96
Query: 164 DGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV---S 219
D T +LWD+R + F + ++ +V+FS + +I + G + ++K+W++ GE S
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS 155
Query: 220 MTLQGHQDMITGMSLSP----------DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
+ H D ++ + SP Y + G D +L +W+ + +
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFK 210
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H E N+ SP+G + G D+ + IWD
Sbjct: 211 AH----ESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 174 QRGAIQTFPDKYQITAVSFSDASDK----IYTGGIDNDVKVWDLRKGEVS-------MTL 222
+RG ++ D FS ++ + +G D V +W L + E + L
Sbjct: 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 223 QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282
GH ++ ++LS + + +++ D L +WD+R R V GHQ +
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV----GHQ----SEVYSV 124
Query: 283 GWSPDGSKVTAGSSDRMVYIWD 304
+SPD ++ + ++R + +W+
Sbjct: 125 AFSPDNRQILSAGAEREIKLWN 146
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 222 LQGHQDMITGMSL------SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV----KILEGH 271
L+GH D +T + + D L++ D + IW + QN K L GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE-EEQNGYFGIPHKALTGH 75
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
H F +L S + + S D+ + +WD + + GH V F
Sbjct: 76 NH-FVSDL---ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 332 VIGSCSSDKQIYLGEI 347
I S ++++I L I
Sbjct: 132 QILSAGAEREIKLWNI 147
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 27/257 (10%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
+I S S D+ I LW + D K + V L GH + + D+ ++DG +S S D LR
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM--RQRGAIQTFPDK 184
WD+ G ++ H V S S +VS S D T KLW+ + I +
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEG 515
Query: 185 YQ--ITAVSFSDASDK--IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240
++ ++ V FS + + I + D VKVW+L ++ TL GH ++ +++SPDGS
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ-HNFEKN--LLKCGWSPDGSKVTAGSSD 297
+ G D + +WD+ EG + ++ E N + +SP+ + A +++
Sbjct: 576 CASGGKDGVVLLWDLA------------EGKKLYSLEANSVIHALCFSPNRYWLCA-ATE 622
Query: 298 RMVYIWDTTSRRILYKL 314
+ IWD S+ I+ L
Sbjct: 623 HGIKIWDLESKSIVEDL 639
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 25/229 (10%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTT 110
GH V ++ F+ I S S DR I LW+ G+CK + +GH++ + + ++
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527
Query: 111 DGSQ--IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
+ Q I+SAS DKT++ W++ K +A H +V++ S G L SG DG
Sbjct: 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVL 586
Query: 169 LWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG----EVSMTLQG 224
LWD+ + + + I A+ FS + ++ +K+WDL ++ + L+
Sbjct: 587 LWDLAEGKKLYSLEANSVIHALCFS-PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKA 645
Query: 225 HQD---------------MITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258
+ T ++ S DGS L + D + +W + Y
Sbjct: 646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 94 MVLKG----HKNAILDLHWTTDGSQII-SASPDKTLRAW-----DVETGKQIKKMAEHNS 143
+VLKG H + + + D + II SAS DK++ W D G +++ H+
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTG 202
FV S G +SGS DG +LWD+ + + F + + +V+FS + +I +
Sbjct: 432 FVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 203 GIDNDVKVWDLRKGEVSMTL----QGHQDMITGMSLSPDG--SYLLTNGMDCKLCIWDMR 256
D +K+W+ GE T+ +GH+D ++ + SP+ +++ D + +W++
Sbjct: 491 SRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316
+ L GH + SPDGS +G D +V +WD + LY L
Sbjct: 550 ----NCKLRSTLAGHTGYVSTVAV----SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 317 HTGSVNESVFHA 328
+ SV HA
Sbjct: 602 N------SVIHA 607
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIW----DMRPYAPQNRCVKILEGHQHNF 275
T++ H DM+T ++ D + ++ + D + +W D + Y R L GH H
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR---LTGHSHFV 433
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335
E +L S DG +GS D + +WD + + GHT V F I S
Sbjct: 434 EDVVL----SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 336 CSSDKQIYL 344
S D+ I L
Sbjct: 490 ASRDRTIKL 498
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
V T + P+G +A G D ++++ G+ + L GH L D +QI+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQIV 158
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGTAKLWDMRQ 174
++S D T WD+ETG+Q H V S P R L VSG+ D +AKLWD+R+
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVRE 215
Query: 175 RGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM- 232
QTF + I A+ F + TG D +++DLR + MT H ++I G+
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGIT 274
Query: 233 --SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-GWSPDGS 289
S S G LL D +WD A + +L GH N + C G + DG
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHD-----NRVSCLGVTDDGM 325
Query: 290 KVTAGSSDRMVYIWD 304
V GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH + +F ++ S S D LW + + GH ++ L D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+S + D + + WDV G + H S +N+ C G +GSDD T +L+D+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDL 255
Query: 173 RQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
R + T+ IT+VSFS + + G D + VWD K + + L GH + +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWD 254
+ + ++ DG + T D L IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 15/214 (7%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
L+GH I +HW TD ++SAS D L WD T ++ + +S+V +C + G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG- 109
Query: 156 PLVVSGSDDGTAKLWDMRQR-GAIQTFPDKY----QITAVSFSDASDKIYTGGIDNDVKV 210
V G D +++++ R G ++ + ++ F D ++I T D +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCAL 168
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ G+ + T GH + +SL+PD ++ D +WD+R + C + G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTG 224
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H E ++ + P+G+ GS D ++D
Sbjct: 225 H----ESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 14/196 (7%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215
L+VS S DG +WD + P + + +++ + + + GG+DN +++L+
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 216 GE----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
E VS L GH ++ D + ++G D +WD+
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTT--------T 179
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
+++ +PD +G+ D +WD GH +N F
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 332 VIGSCSSDKQIYLGEI 347
+ S D L ++
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN-L 279
TL+GH I M D L++ D KL IWD Y + H + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTN-------KVHAIPLRSSWV 100
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGS 335
+ C ++P G+ V G D + I++ +R R+ +L GHTG ++ F ++ S
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 336 CSSDKQIYLGEI 347
S D L +I
Sbjct: 161 -SGDTTCALWDI 171
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
V T + P+G +A G D ++++ G+ + L GH L D +QI+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQIV 158
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGTAKLWDMRQ 174
++S D T WD+ETG+Q H V S P R L VSG+ D +AKLWD+R+
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVRE 215
Query: 175 RGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM- 232
QTF + I A+ F + TG D +++DLR + MT H ++I G+
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGIT 274
Query: 233 --SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-GWSPDGS 289
S S G LL D +WD A + +L GH N + C G + DG
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHD-----NRVSCLGVTDDGM 325
Query: 290 KVTAGSSDRMVYIWD 304
V GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH + +F ++ S S D LW + + GH ++ L D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+S + D + + WDV G + H S +N+ C G +GSDD T +L+D+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDL 255
Query: 173 RQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
R + T+ IT+VSFS + + G D + VWD K + + L GH + +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWD 254
+ + ++ DG + T D L IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 15/214 (7%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
L+GH I +HW TD ++SAS D L WD T ++ + +S+V +C + G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG- 109
Query: 156 PLVVSGSDDGTAKLWDMRQR-GAIQTFPDKY----QITAVSFSDASDKIYTGGIDNDVKV 210
V G D +++++ R G ++ + ++ F D ++I T D +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCAL 168
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ G+ + T GH + +SL+PD ++ D +WD+R + C + G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTG 224
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H E ++ + P+G+ GS D ++D
Sbjct: 225 H----ESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 14/196 (7%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215
L++S S DG +WD + P + + +++ + + + GG+DN +++L+
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 216 GE----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
E VS L GH ++ D + ++G D +WD+
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTT--------T 179
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
+++ +PD +G+ D +WD GH +N F
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 332 VIGSCSSDKQIYLGEI 347
+ S D L ++
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN-L 279
TL+GH I M D LL+ D KL IWD Y + H + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD--SYTTN-------KVHAIPLRSSWV 100
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGS 335
+ C ++P G+ V G D + I++ +R R+ +L GHTG ++ F ++ S
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 336 CSSDKQIYLGEI 347
S D L +I
Sbjct: 161 -SGDTTCALWDI 171
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
V T + P+G +A G D ++++ G+ + L GH L D +QI+
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQIV 169
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGTAKLWDMRQ 174
++S D T WD+ETG+Q H V S P R L VSG+ D +AKLWD+R+
Sbjct: 170 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVRE 226
Query: 175 RGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM- 232
QTF + I A+ F + TG D +++DLR + MT H ++I G+
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGIT 285
Query: 233 --SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-GWSPDGS 289
S S G LL D +WD A + +L GH N + C G + DG
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHD-----NRVSCLGVTDDGM 336
Query: 290 KVTAGSSDRMVYIWD 304
V GS D + IW+
Sbjct: 337 AVATGSWDSFLKIWN 351
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH + +F ++ S S D LW + + GH ++ L D
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 207
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+S + D + + WDV G + H S +N+ C G +GSDD T +L+D+
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDL 266
Query: 173 RQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
R + T+ IT+VSFS + + G D + VWD K + + L GH + +
Sbjct: 267 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWD 254
+ + ++ DG + T D L IW+
Sbjct: 327 SCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 15/214 (7%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
L+GH I +HW TD ++SAS D L WD T ++ + +S+V +C + G
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG- 120
Query: 156 PLVVSGSDDGTAKLWDMRQR-GAIQTFPDKY----QITAVSFSDASDKIYTGGIDNDVKV 210
V G D +++++ R G ++ + ++ F D ++I T D +
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCAL 179
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ G+ + T GH + +SL+PD ++ D +WD+R + C + G
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTG 235
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H E ++ + P+G+ GS D ++D
Sbjct: 236 H----ESDINAICFFPNGNAFATGSDDATCRLFD 265
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 14/196 (7%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215
L+VS S DG +WD + P + + +++ + + + GG+DN +++L+
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 139
Query: 216 GE----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
E VS L GH ++ D + ++G D +WD+
Sbjct: 140 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTT--------T 190
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
+++ +PD +G+ D +WD GH +N F
Sbjct: 191 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 250
Query: 332 VIGSCSSDKQIYLGEI 347
+ S D L ++
Sbjct: 251 AFATGSDDATCRLFDL 266
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN-L 279
TL+GH I M D L++ D KL IWD Y + H + +
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTN-------KVHAIPLRSSWV 111
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGS 335
+ C ++P G+ V G D + I++ +R R+ +L GHTG ++ F ++ S
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 171
Query: 336 CSSDKQIYLGEI 347
S D L +I
Sbjct: 172 -SGDTTCALWDI 182
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
V T + P+G +A G D ++++ G+ + L GH L D +QI+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQIV 158
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGTAKLWDMRQ 174
++S D T WD+ETG+Q H V S P R L VSG+ D +AKLWD+R+
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVRE 215
Query: 175 RGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM- 232
QTF + I A+ F + TG D +++DLR + MT H ++I G+
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGIT 274
Query: 233 --SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-GWSPDGS 289
S S G LL D +WD A + +L GH N + C G + DG
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHD-----NRVSCLGVTDDGM 325
Query: 290 KVTAGSSDRMVYIWD 304
V GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH + +F ++ S S D LW + + GH ++ L D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+S + D + + WDV G + H S +N+ C G +GSDD T +L+D+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDL 255
Query: 173 RQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
R + T+ IT+VSFS + + G D + VWD K + + L GH + +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWD 254
+ + ++ DG + T D L IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 15/214 (7%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
L+GH I +HW TD ++SAS D L WD T ++ + +S+V +C + G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG- 109
Query: 156 PLVVSGSDDGTAKLWDMRQR-GAIQTFPDKY----QITAVSFSDASDKIYTGGIDNDVKV 210
V G D +++++ R G ++ + ++ F D ++I T D +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCAL 168
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ G+ + T GH + +SL+PD ++ D +WD+R + C + G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTG 224
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H E ++ + P+G+ GS D ++D
Sbjct: 225 H----ESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 14/196 (7%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215
L+VS S DG +WD + P + + +++ + + + GG+DN +++L+
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 216 GE----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
E VS L GH ++ D + ++G D +WD+
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTT--------T 179
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
+++ +PD +G+ D +WD GH +N F
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 332 VIGSCSSDKQIYLGEI 347
+ S D L ++
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN-L 279
TL+GH I M D L++ D KL IWD Y + H + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTN-------KVHAIPLRSSWV 100
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGS 335
+ C ++P G+ V G D + I++ +R R+ +L GHTG ++ F ++ S
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 336 CSSDKQIYLGEI 347
S D L +I
Sbjct: 161 -SGDTTCALWDI 171
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
V T + P+G +A G D ++++ G+ + L GH L D +QI+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQIV 158
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGTAKLWDMRQ 174
++S D T WD+ETG+Q H V S P R L VSG+ D +AKLWD+R+
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVRE 215
Query: 175 RGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM- 232
QTF + I A+ F + TG D +++DLR + MT H ++I G+
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGIT 274
Query: 233 --SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-GWSPDGS 289
S S G LL D +WD A + +L GH N + C G + DG
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHD-----NRVSCLGVTDDGM 325
Query: 290 KVTAGSSDRMVYIWD 304
V GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH + +F ++ S S D LW + + GH ++ L D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+S + D + + WDV G + H S +N+ C G +GSDD T +L+D+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDL 255
Query: 173 RQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
R + T+ IT+VSFS + + G D + VWD K + + L GH + +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWD 254
+ + ++ DG + T D L IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 15/214 (7%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
L+GH I +HW TD ++SAS D L WD T ++ + +S+V +C + G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG- 109
Query: 156 PLVVSGSDDGTAKLWDMRQR-GAIQTFPDKY----QITAVSFSDASDKIYTGGIDNDVKV 210
V G D +++++ R G ++ + ++ F D ++I T D +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCAL 168
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ G+ + T GH + +SL+PD ++ D +WD+R + C + G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTG 224
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
H E ++ + P+G+ GS D ++D
Sbjct: 225 H----ESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 14/196 (7%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215
L++S S DG +WD + P + + +++ + + + GG+DN +++L+
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 216 GE----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
E VS L GH ++ D + ++G D +WD+
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTT--------T 179
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
+++ +PD +G+ D +WD GH +N F
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 332 VIGSCSSDKQIYLGEI 347
+ S D L ++
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN-L 279
TL+GH I M D LL+ D KL IWD Y + H + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD--SYTTN-------KVHAIPLRSSWV 100
Query: 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGS 335
+ C ++P G+ V G D + I++ +R R+ +L GHTG ++ F ++ S
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 336 CSSDKQIYLGEI 347
S D L +I
Sbjct: 161 -SGDTTCALWDI 171
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT 110
+++ H AVY F+ G IAS D+ + ++ + + +K H++ +L +++
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSS 674
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKL 169
D S I + S DK ++ WD TGK + EH+ VN C ++ L+ +GS+D KL
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 170 WDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG------EVSMTL 222
WD+ Q+ T F + FS + + + D +++WD+R V
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 223 QGHQD-------MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+D ++ S S DG ++ + K+ ++D+ +I GH
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIH---TSGLLAEIHTGHHSTI 850
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335
+ C +SP S V +W+ SR + GH V+ +F +
Sbjct: 851 Q----YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 906
Query: 336 CSSDKQIYLGE 346
S D+ I + E
Sbjct: 907 ASDDQTIRVWE 917
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 22/275 (8%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114
GH S V+ + F+P G+ + S D+ I +W CKN ++ + +D+ + + +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE---IDVVFQENETM 943
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL--VVSGSDDGTAKLWDM 172
+++ + L+ +TG QI + E V+ CC S P L V G +DG K+ ++
Sbjct: 944 VLAVDNIRGLQLIAGKTG-QIDYLPEAQ--VSCCCLS---PHLEYVAFGDEDGAIKIIEL 997
Query: 173 RQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
+ K + + F+ + + D+ ++VW+ + G+ + LQ HQ+ +
Sbjct: 998 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKD 1056
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
L D S LL+ D + +W++ R + HQ +L C S D +K
Sbjct: 1057 FRLLQD-SRLLSWSFDGTVKVWNV----ITGRIERDFTCHQ----GTVLSCAISSDATKF 1107
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
++ S+D+ IW L++L GH G V S F
Sbjct: 1108 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 51/318 (16%)
Query: 71 VIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129
++A+GS+D + LW ++ +C+N M GH N++ ++ D + S S D TLR WDV
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 130 ETGKQIKKMAEHNSFVNS------------CCP-SRRGPPLVVSGSDDGTAKLWDMRQRG 176
+ + K + F++S CC S G ++V+ + L+D+ G
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN--KVLLFDIHTSG 837
Query: 177 AIQTFPDKYQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGEVSMTLQGHQDMITGMS 233
+ + T + + D S + I V++W++ +GH + G+
Sbjct: 838 LLAEIHTGHHST-IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQN-------------------------RCVKIL 268
SPDGS LT D + +W+ + + R ++++
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 269 EGHQHNF----EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNES 324
G E + C SP V G D + I + + R+ GH +V
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1016
Query: 325 VFHATEPVIGSCSSDKQI 342
F A + S S D I
Sbjct: 1017 QFTADGKTLISSSEDSVI 1034
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251
FS +I + G D ++V+ GE + ++ H+D + + S D SY+ T D K+
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
IWD + + V + +H+ + N + + GS+D + +WD +
Sbjct: 690 IWD----SATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ GHT SVN F + ++ SCS+D + L ++
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 34/296 (11%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS 113
TGH S + F+P + + LW++ K +GH + + + ++ DGS
Sbjct: 844 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-VADCRGHLSWVHGVMFSPDGS 902
Query: 114 QIISASPDKTLRAWD---------VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
++AS D+T+R W+ + ++I + + N + + RG L+ +
Sbjct: 903 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT-- 960
Query: 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224
G I P+ Q++ S + + G D +K+ +L V + G
Sbjct: 961 -----------GQIDYLPEA-QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1008
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284
H+ + + + DG L+++ D + +W+ Q L+ HQ + L
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNW-----QTGDYVFLQAHQETVKDFRL---- 1059
Query: 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340
S++ + S D V +W+ + RI H G+V + S S+DK
Sbjct: 1060 -LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK 1114
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Query: 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL 157
GHK A+ + +T DG +IS+S D ++ W+ +TG + A + +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDF---RLLQDSR 1064
Query: 158 VVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD--KIYTGGIDNDVKVWDLRK 215
++S S DGT K+W++ G I+ +Q T +S + +SD K + D K+W
Sbjct: 1065 LLSWSFDGTVKVWNVIT-GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
Query: 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267
L+GH + + S DG L T + ++ IW++ + C I
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1175
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
T HQ V + + T +S S D+ +W LKGH + ++ DG
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDG 1146
Query: 113 SQIISASPDKTLRAWDVETGKQI---------KKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
+ + + +R W+V G+ + + A H +V C S LV +G
Sbjct: 1147 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-- 1204
Query: 164 DGTAKLWDMRQRGAIQTF 181
G K W++ + QTF
Sbjct: 1205 -GYLKWWNVATGDSSQTF 1221
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 LESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-----DCKNFMVLKG-- 98
L SP+ L GH V F+ G ++A+G + +I +W+V C V +G
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1182
Query: 99 -HKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132
H + D+ ++ D ++SA L+ W+V TG
Sbjct: 1183 THGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1215
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT 110
+++ H AVY F+ G IAS D+ + ++ + + +K H++ +L +++
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSS 667
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKL 169
D S I + S DK ++ WD TGK + EH+ VN C ++ L+ +GS+D KL
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 170 WDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG------EVSMTL 222
WD+ Q+ T F + FS + + + D +++WD+R V
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 223 QGHQD-------MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+D ++ S S DG ++ + K+ ++D+ +I GH
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIH---TSGLLAEIHTGHHSTI 843
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335
+ C +SP S V +W+ SR + GH V+ +F +
Sbjct: 844 Q----YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 899
Query: 336 CSSDKQIYLGE 346
S D+ I + E
Sbjct: 900 ASDDQTIRVWE 910
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 22/275 (8%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114
GH S V+ + F+P G+ + S D+ I +W CKN ++ + +D+ + + +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE---IDVVFQENETM 936
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL--VVSGSDDGTAKLWDM 172
+++ + L+ +TG QI + E V+ CC S P L V G +DG K+ ++
Sbjct: 937 VLAVDNIRGLQLIAGKTG-QIDYLPEAQ--VSCCCLS---PHLEYVAFGDEDGAIKIIEL 990
Query: 173 RQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
+ K + + F+ + + D+ ++VW+ + G+ + LQ HQ+ +
Sbjct: 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKD 1049
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
L D S LL+ D + +W++ R + HQ +L C S D +K
Sbjct: 1050 FRLLQD-SRLLSWSFDGTVKVWNV----ITGRIERDFTCHQ----GTVLSCAISSDATKF 1100
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
++ S+D+ IW L++L GH G V S F
Sbjct: 1101 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251
FS +I + G D ++V+ GE + ++ H+D + + S D SY+ T D K+
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
IWD + + V + +H+ + N + + GS+D + +WD +
Sbjct: 683 IWD----SATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ GHT SVN F + ++ SCS+D + L ++
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 51/318 (16%)
Query: 71 VIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129
++A+GS+D + LW ++ +C+N M GH N++ ++ D + S S D TLR WDV
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 130 ETGKQIKKMAEHNSFVNS------------CCP-SRRGPPLVVSGSDDGTAKLWDMRQRG 176
+ + K + F++S CC S G ++V+ + L+D+ G
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN--KVLLFDIHTSG 830
Query: 177 AIQTFPDKYQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGEVSMTLQGHQDMITGMS 233
+ + T + + D S + I V++W++ +GH + G+
Sbjct: 831 LLAEIHTGHHST-IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQN-------------------------RCVKIL 268
SPDGS LT D + +W+ + + R ++++
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 269 EGHQHNF----EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNES 324
G E + C SP V G D + I + + R+ GH +V
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009
Query: 325 VFHATEPVIGSCSSDKQI 342
F A + S S D I
Sbjct: 1010 QFTADGKTLISSSEDSVI 1027
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 34/296 (11%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS 113
TGH S + F+P + + LW++ K +GH + + + ++ DGS
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-VADCRGHLSWVHGVMFSPDGS 895
Query: 114 QIISASPDKTLRAWD---------VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
++AS D+T+R W+ + ++I + + N + + RG L+ +
Sbjct: 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT-- 953
Query: 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224
G I P+ Q++ S + + G D +K+ +L V + G
Sbjct: 954 -----------GQIDYLPEA-QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284
H+ + + + DG L+++ D + +W+ Q L+ HQ + L
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNW-----QTGDYVFLQAHQETVKDFRL---- 1052
Query: 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340
S++ + S D V +W+ + RI H G+V + S S+DK
Sbjct: 1053 -LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK 1107
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Query: 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL 157
GHK A+ + +T DG +IS+S D ++ W+ +TG + A + +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDF---RLLQDSR 1057
Query: 158 VVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD--KIYTGGIDNDVKVWDLRK 215
++S S DGT K+W++ G I+ +Q T +S + +SD K + D K+W
Sbjct: 1058 LLSWSFDGTVKVWNVIT-GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Query: 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267
L+GH + + S DG L T + ++ IW++ + C I
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
T HQ V + + T +S S D+ +W LKGH + ++ DG
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDG 1139
Query: 113 SQIISASPDKTLRAWDVETGKQI---------KKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
+ + + +R W+V G+ + + A H +V C S LV +G
Sbjct: 1140 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-- 1197
Query: 164 DGTAKLWDMRQRGAIQTF 181
G K W++ + QTF
Sbjct: 1198 -GYLKWWNVATGDSSQTF 1214
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 LESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-----DCKNFMVLKG-- 98
L SP+ L GH V F+ G ++A+G + +I +W+V C V +G
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175
Query: 99 -HKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132
H + D+ ++ D ++SA L+ W+V TG
Sbjct: 1176 THGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1208
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 7/203 (3%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAIL--DLHWTTDGS 113
H + + F + I + S D LW V + GH +L DL + G+
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGN 211
Query: 114 QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173
+S DK WD+ +G+ ++ H S VNS G SGSDD T +L+D+R
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA-SGSDDATCRLYDLR 270
Query: 174 QRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230
+ + + + ++V FS + ++ G D + VWD+ KG L GH++ ++
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330
Query: 231 GMSLSPDGSYLLTNGMDCKLCIW 253
+ +SPDG+ + D L +W
Sbjct: 331 TLRVSPDGTAFCSGSWDHTLRVW 353
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 21/255 (8%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-----HKNAILDLHWTTDGSQ 114
V + P+G IA G D ++ + D M K H N + +T Q
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNS--FVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
I++AS D T WDVE+G+ ++ H + PS G V SG D A +WDM
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV-SGGCDKKAMVWDM 227
Query: 173 RQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
R +Q F + + +V + + D +G D +++DLR + + + + +I G
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-ADREVAIYSKESIIFG 286
Query: 232 MS---LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
S S G L D + +WD+ + V IL GH++ + SPDG
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR----VSILFGHENRVSTLRV----SPDG 338
Query: 289 SKVTAGSSDRMVYIW 303
+ +GS D + +W
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 18/228 (7%)
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150
K LKGH N +L + W D +I+S+S D + WD T + + ++V +C
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 151 SRRGPPLVVSGSDDGTA-------KLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203
+ G + G D+ + K +M + Y ++A SF+++ +I T
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY-LSACSFTNSDMQILTAS 173
Query: 204 IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQ 261
D +WD+ G++ + GH + + L+P G+ ++ G D K +WDMR
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS---- 229
Query: 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309
+CV+ E H E ++ + P G +GS D ++D + R
Sbjct: 230 GQCVQAFETH----ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW 84
S + +L GH++ V T++ +P GT SGS D + +W
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 28/253 (11%)
Query: 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISA 118
VY ++++ I SG D I +W + +CK +L GH ++L L + D II+
Sbjct: 136 VYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY--DERVIITG 189
Query: 119 SPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178
S D T+R WDV TG+ + + H V R ++V+ S D + +WDM I
Sbjct: 190 SSDSTVRVWDVNTGEMLNTLIHHCEAV---LHLRFNNGMMVTCSKDRSIAVWDMASPTDI 246
Query: 179 Q----TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSL 234
+ + V F D I + D +KVW+ E TL GH+ I L
Sbjct: 247 TLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CL 302
Query: 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294
+++ D + +WD+ A C+++LEGH+ L++C D ++ +G
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGA----CLRVLEGHEE-----LVRCI-RFDNKRIVSG 352
Query: 295 SSDRMVYIWDTTS 307
+ D + +WD +
Sbjct: 353 AYDGKIKVWDLVA 365
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG--DCKNFMVLKGHKNAILDLHWTT 110
L H AV ++FN ++ + S DR I +W + D VL GH+ A+ + +
Sbjct: 209 LIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
D I+SAS D+T++ W+ T + ++ + H + +C R LVVSGS D T +LW
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYR--DRLVVSGSSDNTIRLW 321
Query: 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213
D+ ++ ++ D + +I +G D +KVWDL
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDL 363
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD 111
+L GH++AV + F+ V ASG DR I +W+ C+ L GHK I L +
Sbjct: 251 VLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNT-STCEFVRTLNGHKRGIACLQYR-- 305
Query: 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
++S S D T+R WD+E G ++ + H V R +VSG+ DG K+WD
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWD 362
Query: 172 M 172
+
Sbjct: 363 L 363
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 158 VVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217
+VSG D T K+WD + + + + + I TG D+ V+VWD+ GE
Sbjct: 146 IVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE 204
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK-ILEGHQHNFE 276
+ TL H + + + L + ++T D + +WDM +P + ++ +L GH+
Sbjct: 205 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDM--ASPTDITLRRVLVGHRAAV- 259
Query: 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336
N++ D + + S DR + +W+T++ + L GH + + + ++ S
Sbjct: 260 -NVV----DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSG 312
Query: 337 SSDKQIYLGEI 347
SSD I L +I
Sbjct: 313 SSDNTIRLWDI 323
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 21/229 (9%)
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
D +I+S D T++ WD T + + + H V R ++++GS D T ++W
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER---VIITGSSDSTVRVW 198
Query: 171 DMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQ 226
D+ + T + + + F++ + T D + VWD+ + L GH+
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256
Query: 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286
+ + D Y+++ D + +W+ V+ L GH+ + C
Sbjct: 257 AAVNVVDF--DDKYIVSASGDRTIKVWN----TSTCEFVRTLNGHKRG-----IACLQYR 305
Query: 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335
D V +GSSD + +WD L L GH V F V G+
Sbjct: 306 D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 353
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257
KI +G DN +K+WD E L GH + + L D ++T D + +WD+
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNT 202
Query: 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS------RRIL 311
N + E H N G VT S DR + +WD S RR+L
Sbjct: 203 GEMLNTLIHHCEAVLHLRFNN---------GMMVTC-SKDRSIAVWDMASPTDITLRRVL 252
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342
GH +VN V + I S S D+ I
Sbjct: 253 V---GHRAAVN--VVDFDDKYIVSASGDRTI 278
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346
D K+ +G D + IWD + L GHTGSV E VI + SSD + + +
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 199
Query: 347 I 347
+
Sbjct: 200 V 200
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 22/222 (9%)
Query: 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVL-----KGHKNAILD 105
+LTGH+ + ++ P T + +GS D+ LW V + + GH +L
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLS 210
Query: 106 LHWTT-DGSQIISASPDKTLRAWDVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
L + + + IS S D T+R WD+ T + ++ H +NS G +GSD
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG-TGSD 269
Query: 164 DGTAKLWDMRQRGAIQTF---PDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215
DGT +L+DMR +Q + PD+ +T+V+FS + ++ G + D VWD
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 216 GEVSMTL----QGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
E+ + L H+ I+ + LS DGS L T D L IW
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 110/271 (40%), Gaps = 25/271 (9%)
Query: 60 VYTMKFNPAGTVIASGSHDR--DIFLWHVHGDCKNFM----VLKGHKNAILDLHWTTDG- 112
V F P G +A G D IF D M VL GHK + D
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAE-----HNSFVNSCCPSRRGPPLVVSGSDDGTA 167
+++I+ S D+T WDV TG++I H + V S + + +SGS D T
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 168 KLWDMR-QRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
+LWD+R A++T+ + I +V F + TG D +++D+R G
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 226 QD-------MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278
D ++T ++ S G L + +WD V L Q++ E
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD----TLLAEMVLNLGTLQNSHEGR 346
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309
+ G S DGS + GS D+ + IW + R
Sbjct: 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH VY++ + P I S S D + +W+ K + K H +++ + +G
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPNG 120
Query: 113 SQIISASPDKTLRAWDVETGKQ-------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165
+ D +++ + + + H + +SC +++GS D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 166 TAKLWDMR--QRGAI--QTFPDKYQITAVSFSDAS---DKIYTGGIDNDVKVWDLR-KGE 217
T LWD+ QR +I FP + +S S S + +G D V++WDLR
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ---HN 274
T GH+ I + PDG T D ++DMR GHQ +N
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT------------GHQLQVYN 288
Query: 275 FEKN--------LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314
E + + +S G + AG S+ Y+WDT ++ L
Sbjct: 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 27/120 (22%)
Query: 204 IDNDVKVWDLRKGEVSM-----------TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI 252
+D DV+ + +G ++ TLQGH + + +P+ +++++ D +L +
Sbjct: 33 LDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIV 92
Query: 253 WD----MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
W+ + +A + C ++E C ++P+G V G D I++ +S+
Sbjct: 93 WNALTSQKTHAIKLHCPWVME------------CAFAPNGQSVACGGLDSACSIFNLSSQ 140
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 27/235 (11%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAI--LDLH 107
++ L+GH V+ +K+ G ++ SGS DR + +W + C V +GH + + LD+
Sbjct: 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIV 212
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP------------ 155
+ I++ S D TL W + + E + + P
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 156 --------PLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASDKIYTGGIDN 206
+VVSGS D T +WD+ Q + +I + + + + +D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261
+++WDL GE+ TLQGH ++ + LS +L++ D + WD Y+ +
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK 385
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 9/174 (5%)
Query: 47 ESPIML--LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAIL 104
E+P + L GH ++V T+ + G ++ SGS+D + +W V K +L GH + I
Sbjct: 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIY 314
Query: 105 DLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
+ + + ISAS D T+R WD+E G+ + + H + V R +VS + D
Sbjct: 315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL---RLSDKFLVSAAAD 371
Query: 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
G+ + WD ++ ++A++ SD I G +N +++LR G++
Sbjct: 372 GSIRGWDANDYSRKFSYHHT-NLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 424
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 36/292 (12%)
Query: 53 LTGHQSAVYT-MKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD 111
L GH ++V T ++F + +G+ D+ I ++ + K + L GH + L +
Sbjct: 117 LRGHMTSVITCLQFED--NYVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYA-H 172
Query: 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKLW 170
G ++S S D+T+R WD++ G HNS V + +V+GS D T +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230
+ + ++ +++ V + + + G L+GH M +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG------------------VLRGH--MAS 272
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
++S G+ +++ D L +WD+ Q +C+ IL GH + + + +
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDV----AQMKCLYILSGHTDRIYSTI----YDHERKR 324
Query: 291 VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342
+ S D + IWD + ++Y L GHT V + ++ + S ++D I
Sbjct: 325 CISASMDTTIRIWDLENGELMYTLQGHTALV--GLLRLSDKFLVSAAADGSI 374
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 158 VVSGSDDGTAKLWD-MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
V++G+DD +++D + ++ +Q + A+ ++ + +G D V+VWD++KG
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193
Query: 217 EVSMTLQGHQDMITGMSL--SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274
+ +GH + + + + Y++T D L +W + P+ V G +H+
Sbjct: 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPD-HGEEHD 248
Query: 275 F-------EKNLLKCGW-----------SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316
+ E+N G S G+ V +GS D + +WD + LY L G
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308
Query: 317 HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
HT + +++ S S D I + ++
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 27/235 (11%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAI--LDLH 107
++ L+GH V+ +K+ G ++ SGS DR + +W + C V +GH + + LD+
Sbjct: 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIV 212
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP------------ 155
+ I++ S D TL W + + E + + P
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 156 --------PLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASDKIYTGGIDN 206
+VVSGS D T +WD+ Q + +I + + + + D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261
+++WDL GE+ TLQGH ++ + LS +L++ D + WD Y+ +
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK 385
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 47 ESPIML--LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAIL 104
E+P + L GH ++V T+ + G ++ SGS+D + +W V K +L GH + I
Sbjct: 258 ENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSGHTDRIY 314
Query: 105 DLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
+ + + ISAS D T+R WD+E G+ + H + V R +VS + D
Sbjct: 315 STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL---RLSDKFLVSAAAD 371
Query: 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
G+ + WD ++ ++A++ SD I G +N +++LR G++
Sbjct: 372 GSIRGWDANDYSRKFSYHHT-NLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 424
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 53 LTGHQSAVYT-MKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV-LKGHKNAILDLHWTT 110
L GH ++V T ++F + +G+ D+ I ++ K F++ L GH + L +
Sbjct: 117 LRGHXTSVITCLQFED--NYVITGADDKXIRVYD--SINKKFLLQLSGHDGGVWALKYA- 171
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKL 169
G ++S S D+T+R WD++ G HNS V + +V+GS D T +
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
W + + ++ +++ V + + + G L+GH +
Sbjct: 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG------------------VLRGHXASV 273
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289
++S G+ +++ D L +WD+ Q +C+ IL GH + + +
Sbjct: 274 --RTVSGHGNIVVSGSYDNTLIVWDV----AQXKCLYILSGHTDRIYSTI----YDHERK 323
Query: 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342
+ + S D + IWD + + Y L GHT V + ++ + S ++D I
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALV--GLLRLSDKFLVSAAADGSI 374
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 158 VVSGSDDGTAKLWD-MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
V++G+DD +++D + ++ +Q + A+ ++ + +G D V+VWD++KG
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193
Query: 217 EVSMTLQGHQDMITGMSL--SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274
+ +GH + + + + Y++T D L +W + P+ V G +H+
Sbjct: 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPD-HGEEHD 248
Query: 275 F-------EKNLLKCGW-----------SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316
+ E+N G S G+ V +GS D + +WD + LY L G
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 317 HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
HT + +++ S S D I + ++
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 118/287 (41%), Gaps = 36/287 (12%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDL 106
S +++ H ++ + G +A+ S D+ I ++ V G+ + L GH+ + +
Sbjct: 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV 61
Query: 107 HWT--TDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSC--CPSRRGPPLVVS 160
W G+ + S S D + W E G+ QI A H++ VNS P GP L+V+
Sbjct: 62 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121
Query: 161 GSDDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDA---------------SDKIYTGGI 204
SD G + + ++ G D + I S S A S K TGG
Sbjct: 122 SSD-GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 205 DNDVKVW----DLRKGEVSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDM-R 256
DN VK+W D + + TL+GH D + ++ SP SYL + D IW
Sbjct: 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
Query: 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
P + + + F L + WS G+ + D V +W
Sbjct: 241 EQGPWKKTLL----KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 36/285 (12%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHW 108
+++ H ++ + G +A+ S D+ I ++ V G+ + L GH+ + + W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 109 T--TDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSC--CPSRRGPPLVVSGS 162
G+ + S S D + W E G+ QI A H++ VNS P GP L+V+ S
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 163 DDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDA---------------SDKIYTGGIDN 206
D G + + ++ G D + I S S A S K TGG DN
Sbjct: 122 D-GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 207 DVKVW----DLRKGEVSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDM-RPY 258
VK+W D + + TL+GH D + ++ SP SYL + D IW
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
P + + + F L + WS G+ + D V +W
Sbjct: 241 GPWKKTLL----KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 36/285 (12%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHW 108
+++ H ++ + G +A+ S D+ I ++ V G+ + L GH+ + + W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 109 T--TDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSC--CPSRRGPPLVVSGS 162
G+ + S S D + W E G+ QI A H++ VNS P GP L+V+ S
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 163 DDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDA---------------SDKIYTGGIDN 206
D G + + ++ G D + I S S A S K TGG DN
Sbjct: 122 D-GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 207 DVKVW----DLRKGEVSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDM-RPY 258
VK+W D + + TL+GH D + ++ SP SYL + D IW
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
P + + + F L + WS G+ + D V +W
Sbjct: 241 GPWKKTLL----KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 36/285 (12%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHW 108
+++ H ++ + G +A+ S D+ I ++ V G+ + L GH+ + + W
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 109 T--TDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSC--CPSRRGPPLVVSGS 162
G+ + S S D + W E G+ QI A H++ VNS P GP L+V+ S
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 163 DDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDA---------------SDKIYTGGIDN 206
D G + + ++ G D + I S S A S K TGG DN
Sbjct: 122 D-GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 207 DVKVW----DLRKGEVSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDM-RPY 258
VK+W D + + TL+GH D + ++ SP SY+ + D IW
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240
Query: 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
P + + + F L + WS G+ + D V +W
Sbjct: 241 GPWKKTLL----KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 115/285 (40%), Gaps = 36/285 (12%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHW 108
+++ H ++ + G A+ S D+ I ++ V G+ + L GH+ + + W
Sbjct: 2 VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 109 T--TDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSC--CPSRRGPPLVVSGS 162
G+ + S S D + W E G+ QI A H++ VNS P GP L+V+ S
Sbjct: 62 AHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASS 121
Query: 163 DDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDA---------------SDKIYTGGIDN 206
D G + + ++ G D + I S S A S K TGG DN
Sbjct: 122 D-GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 207 DVKVW----DLRKGEVSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDM-RPY 258
VK+W D + + TL+GH D + ++ SP SY + D IW
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQ 240
Query: 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
P + + + F L + WS G+ + D V +W
Sbjct: 241 GPWKKTLL----KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 27/238 (11%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHV---------HGDCKN 92
T +E I + H+ V ++ P +IA+ + D+ ++ G+C
Sbjct: 114 TGKIECEIKI--NHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNP 171
Query: 93 FMVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAE-------HNSF 144
+ L+GH+ L W ++ S ++SAS D T+ WD+ G + K+ + H++
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAV 231
Query: 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT--FPDKY--QITAVSFSDASDKIY 200
V L S +DD +WD R + D + ++ +SF+ S+ I
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 201 -TGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDM 255
TG D V +WDLR ++ + T + H+D I + SP +L ++G D +L +WD+
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
R+++ P L+ H + V + FNP + ++A+GS D+ + LW + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 101 NAILDLHWTTDGSQIISAS-PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV 159
+ I +HW+ I+++S D+ L WD + K+ E S + + GPP ++
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWD------LSKIGEEQSAED----AEDGPPELL 369
Query: 160 SGSDDGTAKLWDM 172
TAK+ D
Sbjct: 370 FIHGGHTAKISDF 382
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 193 SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGM---- 246
S+ S + + D+ V +WD+ G + + + TG S + +LL +
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 247 --DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA-GSSDRMVYIW 303
D KL IWD R ++ +++ H E N L ++P + A GS+D+ V +W
Sbjct: 249 ADDQKLXIWDTRSNT-TSKPSHLVDAH--TAEVNCL--SFNPYSEFILATGSADKTVALW 303
Query: 304 DTTSRRI-LYKLPGHTGSVNESVFHA-TEPVIGSCSSDKQIYLGEI 347
D + ++ L+ H + + + E ++ S +D+++ + ++
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 53/325 (16%)
Query: 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---CKNFMVLKGHKNAILDLHWTTDGSQ 114
S + + +NPAGT++AS DR I +W GD CK+ + +GH+ + + W+ G+
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNY 75
Query: 115 IISASPDKTLRAW--DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ SAS D T W + + + + + H + V S + G L+ + S D + +W++
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEV 134
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDK-----------IYTGGIDNDVKVWDLRKGE--VS 219
+ D+Y+ +V S D + + D+ VK++ + +
Sbjct: 135 DEE-------DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC 187
Query: 220 MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN-------------RCVK 266
TL+GH+ + ++ P G L + D + IW R Y P N +C+
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW--RQYLPGNEQGVACSGSDPSWKCIC 245
Query: 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTS--RRILYKLP-----GHT 318
L G ++ C + G+ TA D + V+ D S ++ + L H+
Sbjct: 246 TLSGFHSRTIYDIAWCQLT--GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303
Query: 319 GSVNESVFHATEP-VIGSCSSDKQI 342
VN ++ EP ++ SCS D ++
Sbjct: 304 QDVNCVAWNPKEPGLLASCSDDGEV 328
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQDMITGM 232
G + PD + ++++ A + + G D +++W S+ +GHQ + +
Sbjct: 9 GRVPAHPDS-RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 233 SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292
+ SP G+YL + D CIW + CV LEGH E + W+P G+ +
Sbjct: 68 AWSPCGNYLASASFDATTCIW--KKNQDDFECVTTLEGH----ENEVKSVAWAPSGNLLA 121
Query: 293 AGSSDRMVYIWDTTSR---RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
S D+ V++W+ + L HT V V+H ++ ++ S S D + L
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 12/154 (7%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV--HGDCKNFMVLKGHKNAILDLH 107
+ L GH++ V ++ + P+G ++A+ S D+ +++W V + + VL H + +
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQI--KKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165
W + SAS D T++ + E + + H S V S G L S SDD
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL-ASCSDDR 216
Query: 166 TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI 199
T ++W Q P Q A S SD S K
Sbjct: 217 TVRIWR-------QYLPGNEQGVACSGSDPSWKC 243
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW--HVHGD-----C-------KNFMVLKG 98
L GH+S V+++ F+P+G +AS S DR + +W ++ G+ C K L G
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 99 -HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK---------MAEHNSFVNSC 148
H I D+ W + +A D +R + + ++ H+ VN
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQ 174
+ + P L+ S SDDG W ++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL-EGHQHNFEKNLLKCGWSPDGSK 290
++ +P G+ L + G D ++ IW C +L EGHQ + + K WSP G+
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQ----RTVRKVAWSPCGNY 75
Query: 291 VTAGSSDRMVYIW--DTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ + S D IW + + L GH V + + ++ +CS DK +++ E+
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 15/183 (8%)
Query: 88 GDCKNFMVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAE------ 140
G+C + L+GH+ L W ++ S ++SAS D T+ WD+ G + K+ +
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT 226
Query: 141 -HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT--FPDKY--QITAVSFSDA 195
H++ V L S +DD +WD R + D + ++ +SF+
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 196 SDKIY-TGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCI 252
S+ I TG D V +WDLR ++ + T + H+D I + SP +L ++G D +L +
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 253 WDM 255
WD+
Sbjct: 347 WDL 349
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
R+++ P L+ H + V + FNP + ++A+GS D+ + LW + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 101 NAILDLHWTTDGSQIISAS-PDKTLRAWDVET--GKQIKKMAE------------HNSFV 145
+ I +HW+ I+++S D+ L WD+ +Q + AE H + +
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
+ + P ++ S S+D ++W M +
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 193 SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGM---- 246
S+ S + + D+ V +WD+ G + + + TG S + +LL +
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 247 --DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA-GSSDRMVYIW 303
D KL IWD R ++ +++ H E N L ++P + A GS+D+ V +W
Sbjct: 249 ADDQKLMIWDTRSNT-TSKPSHLVDAH--TAEVNCL--SFNPYSEFILATGSADKTVALW 303
Query: 304 DTTSRRI-LYKLPGHTGSVNESVFHA-TEPVIGSCSSDKQIYLGEI 347
D + ++ L+ H + + + E ++ S +D+++ + ++
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 8/213 (3%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDL 106
++ + + GHQ+ V + +N V++SGS I V L+GH + + L
Sbjct: 166 QTKLRTMAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDD 164
W +DG Q+ S D ++ WD + HN+ V + CP + G+ D
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283
Query: 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT--GGIDNDVKVWDLRKGEVS--M 220
W+ + T Q+T++ +S S +I + G DN++ +W ++ +
Sbjct: 284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
+ H + +LSPDG L T D L W
Sbjct: 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 117/281 (41%), Gaps = 25/281 (8%)
Query: 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137
+R++++W+ + + + + W+ DGS + + + +DVE+ +++
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT 171
Query: 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR----QRGAIQTFPDKYQITAVSFS 193
MA H + V +R ++ SGS G D+R Q G +Q ++ +++
Sbjct: 172 MAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWR 226
Query: 194 DASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKL 250
++ +GG DN V++WD R T H + ++ P S LL G MD ++
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286
Query: 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV--TAGSSDRMVYIWDTTSR 308
W+ A R + G Q + WSP ++ T G D + IW +S
Sbjct: 287 HFWNA---ATGARVNTVDAGSQ------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337
Query: 309 RILYK--LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ + +P H V S ++ + +SD+ + +
Sbjct: 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 28/258 (10%)
Query: 104 LDLHWTTDGSQI--------------ISASPDKTLRAWDVETGKQIKKM--AEHNSFVNS 147
LDL W+ +G Q+ S+S D +R WD+E GKQIK + +++ +
Sbjct: 70 LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDN 206
P + + +G+ G ++ + + + + I ++++S + +G ID
Sbjct: 130 FSPDSQ---YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266
+ ++D+ G++ TL+GH I ++ SPD L+T D + I+D++
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----HANLAG 242
Query: 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
L GH +L + PD + + SSD+ V +WD +R ++ H V +
Sbjct: 243 TLSGH----ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Query: 327 HATEPVIGSCSSDKQIYL 344
+ I S D++I++
Sbjct: 299 NGNGSKIVSVGDDQEIHI 316
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 17/256 (6%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD---LHWT 109
L GHQ V ++ + + AS S D I LW D +N +K +D L ++
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLW----DLENGKQIKSIDAGPVDAWTLAFS 131
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
D + + + + + VE+GK+ + F+ S S G L SG+ DG +
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA-SGAIDGIINI 190
Query: 170 WDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM 228
+D+ + T I +++FS S + T D +K++D++ ++ TL GH
Sbjct: 191 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
+ ++ PD ++ +++ D + +WD+ CV HQ + ++ +G
Sbjct: 251 VLNVAFCPDDTHFVSSSSDKSVKVWDV----GTRTCVHTFFDHQ----DQVWGVKYNGNG 302
Query: 289 SKVTAGSSDRMVYIWD 304
SK+ + D+ ++I+D
Sbjct: 303 SKIVSVGDDQEIHIYD 318
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 152 RRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKYQITAVSFSDASDKI---YTGGIDND 207
+ VV+GS D K+W R +R +Q + +Q+ VS D S + + +D
Sbjct: 45 KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV-DISHTLPIAASSSLDAH 103
Query: 208 VKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM----RPYAPQN 262
+++WDL G ++ G D T ++ SPD YL T K+ I+ + + Y+
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT 162
Query: 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN 322
R K +L +SPDG + +G+ D ++ I+D + ++L+ L GH +
Sbjct: 163 RG------------KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 323 ESVFHATEPVIGSCSSDKQIYLGEI 347
F ++ + S D I + ++
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 16/241 (6%)
Query: 93 FMVLKGHKNAILDLHWTTDGSQ----IISASPDKTLRAWDVETGK-QIKKMAEHNSFVNS 147
F + H +AI + W T+ + +++ S D ++ W + ++ E +
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA--VSFSDASDKIYTGGID 205
P+ S S D +LWD+ I++ D + A ++FS S + TG
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHV 143
Query: 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265
V ++ + G+ +L I ++ SPDG YL + +D + I+D+ + +
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI----ATGKLL 199
Query: 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325
LEGH + +SPD + S D + I+D + L GH V
Sbjct: 200 HTLEGH----AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255
Query: 326 F 326
F
Sbjct: 256 F 256
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 39/255 (15%)
Query: 32 PQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHG-- 88
P P P+G+ + P + L GHQ Y + +NP + S S D I LW ++
Sbjct: 162 PSKPEPSGECQ------PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 215
Query: 89 ------DCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVE---TGKQIKKM 138
D KN + GH + D+ W + S + D+ L WD T K +
Sbjct: 216 KEHRVIDAKN--IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273
Query: 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPD-KYQITAVSFSDAS 196
H + VN + ++ +GS D T LWD+R + + +F K +I V +S +
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 333
Query: 197 DKIY-TGGIDNDVKVWDLRK-GEVSMTLQ-------------GHQDMITGMSLSPDGSYL 241
+ I + G D + VWDL K GE T GH I+ S +P+ ++
Sbjct: 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393
Query: 242 LTN-GMDCKLCIWDM 255
+ + D + +W M
Sbjct: 394 ICSVSEDNIMQVWQM 408
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 25/231 (10%)
Query: 50 IMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHV---------HGDCKNFMVLKGH 99
I + H+ V ++ P VIA+ + D+ ++ G+C+ + L+GH
Sbjct: 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 180
Query: 100 KNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAE-------HNSFVNSCCPS 151
+ L W + ++SAS D T+ WD+ + ++ + H + V
Sbjct: 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAVSFSDASDKIY-TGGIDN 206
L S +DD +WD R + ++ +SF+ S+ I TG D
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 207 DVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDM 255
V +WDLR ++ + + + H+D I + SP +L ++G D +L +WD+
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
R ++ P + H + V + FNP + ++A+GS D+ + LW + + HK
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 101 NAILDLHWTTDGSQIISAS-PDKTLRAWDVET--GKQIKKMAE------------HNSFV 145
+ I + W+ I+++S D+ L WD+ +Q + AE H + +
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174
+ + P ++ S S+D ++W M +
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 199 IYTGGIDNDVKVWDLRK--------GEVS--MTLQGHQDMITGMSLSPD-GSYLLTNGMD 247
I T +DV V+D K GE + L+GHQ G+S +P+ YLL+ D
Sbjct: 144 IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 248 CKLCIWDMRPYAPQNRCV---KILEGHQHNFEKNLLKCGWS-PDGSKVTAGSSDRMVYIW 303
+C+WD+ ++R + I GH E W S + + D+ + IW
Sbjct: 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVE----DVAWHLLHESLFGSVADDQKLMIW 259
Query: 304 DT---TSRRILYKLPGHTGSVNESVFHA-TEPVIGSCSSDKQIYLGEI 347
DT + + + + HT VN F+ +E ++ + S+DK + L ++
Sbjct: 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 39/255 (15%)
Query: 32 PQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHG-- 88
P P P+G+ + P + L GHQ Y + +NP + S S D I LW ++
Sbjct: 164 PSKPEPSGECQ------PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 217
Query: 89 ------DCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVE---TGKQIKKM 138
D KN + GH + D+ W + S + D+ L WD T K +
Sbjct: 218 KEHRVIDAKN--IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 275
Query: 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPD-KYQITAVSFSDAS 196
H + VN + ++ +GS D T LWD+R + + +F K +I V +S +
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 335
Query: 197 DKIY-TGGIDNDVKVWDLRK-GEVSMTLQ-------------GHQDMITGMSLSPDGSYL 241
+ I + G D + VWDL K GE T GH I+ S +P+ ++
Sbjct: 336 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 395
Query: 242 LTN-GMDCKLCIWDM 255
+ + D + +W M
Sbjct: 396 ICSVSEDNIMQVWQM 410
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 25/231 (10%)
Query: 50 IMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHV---------HGDCKNFMVLKGH 99
I + H+ V ++ P VIA+ + D+ ++ G+C+ + L+GH
Sbjct: 123 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 182
Query: 100 KNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAE-------HNSFVNSCCPS 151
+ L W + ++SAS D T+ WD+ + ++ + H + V
Sbjct: 183 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 242
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAVSFSDASDKIY-TGGIDN 206
L S +DD +WD R + ++ +SF+ S+ I TG D
Sbjct: 243 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 207 DVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDM 255
V +WDLR ++ + + + H+D I + SP +L ++G D +L +WD+
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
R ++ P + H + V + FNP + ++A+GS D+ + LW + + HK
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 101 NAILDLHWTTDGSQIISAS-PDKTLRAWDVET--GKQIKKMAE------------HNSFV 145
+ I + W+ I+++S D+ L WD+ +Q + AE H + +
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174
+ + P ++ S S+D ++W M +
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 220 MTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCV---KILEGHQHNF 275
+ L+GHQ G+S +P+ YLL+ D +C+WD+ ++R + I GH
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 236
Query: 276 EKNLLKCGWS-PDGSKVTAGSSDRMVYIWDT---TSRRILYKLPGHTGSVNESVFHA-TE 330
E W S + + D+ + IWDT + + + + HT VN F+ +E
Sbjct: 237 E----DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 331 PVIGSCSSDKQIYLGEI 347
++ + S+DK + L ++
Sbjct: 293 FILATGSADKTVALWDL 309
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 39/255 (15%)
Query: 32 PQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHG-- 88
P P P+G+ + P + L GHQ Y + +NP + S S D I LW ++
Sbjct: 166 PSKPEPSGECQ------PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 219
Query: 89 ------DCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVE---TGKQIKKM 138
D KN + GH + D+ W + S + D+ L WD T K +
Sbjct: 220 KEHRVIDAKN--IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 277
Query: 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPD-KYQITAVSFSDAS 196
H + VN + ++ +GS D T LWD+R + + +F K +I V +S +
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 337
Query: 197 DKIY-TGGIDNDVKVWDLRK-GEVSMTLQ-------------GHQDMITGMSLSPDGSYL 241
+ I + G D + VWDL K GE T GH I+ S +P+ ++
Sbjct: 338 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 397
Query: 242 LTN-GMDCKLCIWDM 255
+ + D + +W M
Sbjct: 398 ICSVSEDNIMQVWQM 412
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 25/231 (10%)
Query: 50 IMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHV---------HGDCKNFMVLKGH 99
I + H+ V ++ P VIA+ + D+ ++ G+C+ + L+GH
Sbjct: 125 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 184
Query: 100 KNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAE-------HNSFVNSCCPS 151
+ L W + ++SAS D T+ WD+ + ++ + H + V
Sbjct: 185 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 244
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAVSFSDASDKIY-TGGIDN 206
L S +DD +WD R + ++ +SF+ S+ I TG D
Sbjct: 245 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 207 DVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDM 255
V +WDLR ++ + + + H+D I + SP +L ++G D +L +WD+
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 220 MTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCV---KILEGHQHNF 275
+ L+GHQ G+S +P+ YLL+ D +C+WD+ ++R + I GH
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 238
Query: 276 EKNLLKCGWS-PDGSKVTAGSSDRMVYIWDT---TSRRILYKLPGHTGSVNESVFHA-TE 330
E W S + + D+ + IWDT + + + + HT VN F+ +E
Sbjct: 239 E----DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 331 PVIGSCSSDKQIYLGEI 347
++ + S+DK + L ++
Sbjct: 295 FILATGSADKTVALWDL 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDM 172
II S D +R ++ TG+++ H ++ S P++ P V+SGSDD T KLW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNW 126
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
A++ T +GH+ + +
Sbjct: 127 ENNWALE----------------------------------------QTFEGHEHFVMCV 146
Query: 233 SLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
+ +P D S + +D + +W + P + G + N + PD +
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGV--NYVDYYPLPDKPYM 201
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339
S D + IWD ++ + L GH +V+ +VFH T P+I S S D
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 6/207 (2%)
Query: 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
++ V KF I GS D I +++ + + + + H + I + ++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL 113
Query: 117 SASPDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
S S D T++ W+ E +++ E H FV + + P SG D T K+W + Q
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 176 GAIQTFPDKYQ--ITAVSFSDASDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
T + + V + DK Y T D +K+WD + TL+GH ++
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPY 258
P +++ D L IW+ Y
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 10/181 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
++ H + ++ +P + SGS D + LW+ + +GH++ ++ + +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 110 -TDGSQIISASPDKTLRAWDV-ETGKQIKKMAEHNSFVNSC----CPSRRGPPLVVSGSD 163
D S S D+T++ W + ++ VN P + P +++ SD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASD 206
Query: 164 DGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222
D T K+WD + + + T ++ F I +G D +K+W+ +V TL
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 223 Q 223
Sbjct: 267 N 267
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85
+S + L GH S V F+P +I SGS D + +W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDM 172
II S D +R ++ TG+++ H ++ S P++ P V+SGSDD T KLW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNW 126
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
A++ T +GH+ + +
Sbjct: 127 ENNWALE----------------------------------------QTFEGHEHFVMCV 146
Query: 233 SLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
+ +P D S + +D + +W + P + G + N + PD +
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGV--NYVDYYPLPDKPYM 201
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339
S D + IWD ++ + L GH +V+ +VFH T P+I S S D
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 6/207 (2%)
Query: 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
++ V KF I GS D I +++ + + + + H + I + ++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL 113
Query: 117 SASPDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
S S D T++ W+ E +++ E H FV + + P SG D T K+W + Q
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 176 GAIQTFPDKYQ--ITAVSFSDASDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
T + + V + DK Y T D +K+WD + TL+GH ++
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPY 258
P +++ D L IW+ Y
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 10/181 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
++ H + ++ +P + SGS D + LW+ + +GH++ ++ + +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 110 -TDGSQIISASPDKTLRAWDV-ETGKQIKKMAEHNSFVNSC----CPSRRGPPLVVSGSD 163
D S S D+T++ W + ++ VN P + P +++ SD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASD 206
Query: 164 DGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222
D T K+WD + + + T ++ F I +G D +K+W+ +V TL
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 223 Q 223
Sbjct: 267 N 267
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85
+S + L GH S V F+P +I SGS D + +W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDM 172
II S D +R ++ TG+++ H ++ S P++ P V+SGSDD T KLW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNW 126
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
A++ T +GH+ + +
Sbjct: 127 ENNWALE----------------------------------------QTFEGHEHFVMCV 146
Query: 233 SLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
+ +P D S + +D + +W + P + G + N + PD +
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGV--NYVDYYPLPDKPYM 201
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339
S D + IWD ++ + L GH +V+ +VFH T P+I S S D
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173
++S S D T++ W+ E +++ E H FV + + P SG D T K+W +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 174 QRGAIQTFPDKYQ--ITAVSFSDASDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
Q T + + V + DK Y T D +K+WD + TL+GH +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258
+ P +++ D L IW+ Y
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 10/181 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
++ H + ++ +P + SGS D + LW+ + +GH++ ++ + +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 110 -TDGSQIISASPDKTLRAWDV-ETGKQIKKMAEHNSFVNSC----CPSRRGPPLVVSGSD 163
D S S D+T++ W + ++ VN P + P +++ SD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASD 206
Query: 164 DGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222
D T K+WD + + + T ++ F I +G D +K+W+ +V TL
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 223 Q 223
Sbjct: 267 N 267
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85
+S + L GH S V F+P +I SGS D + +W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDM 172
II S D +R ++ TG+++ H ++ S P++ P V+SGSDD T KLW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNW 126
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
A++ T +GH+ + +
Sbjct: 127 ENNWALE----------------------------------------QTFEGHEHFVMCV 146
Query: 233 SLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
+ +P D S + +D + +W + P + G + N + PD +
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGV--NYVDYYPLPDKPYM 201
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339
S D + IWD ++ + L GH +V+ +VFH T P+I S S D
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173
++S S D T++ W+ E +++ E H FV + + P SG D T K+W +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 174 QRGAIQTFPDKYQ--ITAVSFSDASDKIY--TGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
Q T + + V + DK Y T D +K+WD + TL+GH +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258
+ P +++ D L IW+ Y
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 10/181 (5%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
++ H + ++ +P + SGS D + LW+ + +GH++ ++ + +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 110 -TDGSQIISASPDKTLRAWDV-ETGKQIKKMAEHNSFVNSC----CPSRRGPPLVVSGSD 163
D S S D+T++ W + ++ VN P + P +++ SD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASD 206
Query: 164 DGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222
D T K+WD + + + T ++ F I +G D +K+W+ +V TL
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 223 Q 223
Sbjct: 267 N 267
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85
+S + L GH S V F+P +I SGS D + +W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 6/207 (2%)
Query: 115 IISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+++ + D ++ W +G Q+ +M + +++S + G L V G+ +LWD+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDV 96
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITG 231
+Q+ ++ + S S S + +G + D+R E + TL GH + G
Sbjct: 97 QQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
+ +PDG +L + G D + +W P ++ HQ K + C W +
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLAT 214
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHT 318
G+SDR + IW+ S L + H+
Sbjct: 215 GGGTSDRHIRIWNVCSGACLSAVDAHS 241
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 68 AGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
+G V+A + D ++LW GD + ++ I + W +G+ + + ++
Sbjct: 35 SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKY 185
WDV+ K+++ M H++ V S + ++ SGS G D+R + T
Sbjct: 94 WDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150
Query: 186 Q-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS----MTLQGHQDMITGMSLSPDGSY 240
Q + + ++ + +GG DN V VW GE T HQ + ++ P S
Sbjct: 151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 210
Query: 241 LLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS-- 295
+L G D + IW++ A C+ ++ H + WSP ++ +G
Sbjct: 211 VLATGGGTSDRHIRIWNVCSGA----CLSAVDAH-----SQVCSILWSPHYKELISGHGF 261
Query: 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ + IW + + +L GHT V + S ++D+ + L
Sbjct: 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 10/209 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
+T H + V ++ +N +++SGS I V + L GH + L W DG
Sbjct: 105 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162
Query: 113 SQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGT 166
+ S D + W G+ ++ +H V + CP + G+ D
Sbjct: 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQG 224
++W++ + Q+ ++ +S ++ +G N + +W L+G
Sbjct: 223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 282
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
H + +++SPDG+ + + D L +W
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 45/179 (25%)
Query: 183 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--DMITGMSLSPDGSY 240
+ Y + V +S S + +DN V +W G++ LQ Q + I+ ++ +G+Y
Sbjct: 24 NDYYLNLVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 81
Query: 241 LLTNGMDCKLCIWD------MRPYAPQNRCVKIL------------EGHQHNFEKNLLK- 281
L ++ +WD +R + V L GH H+ + + +
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 282 ------------CG--WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
CG W+PDG + +G +D +V +W + PG G V F
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 192
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 10/209 (4%)
Query: 115 IISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+++ + D ++ W +G Q+ +M + +++S + G L V G+ +LWD+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDV 176
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITG 231
+Q+ ++ + S S S + +G + D+R E + TL GH + G
Sbjct: 177 QQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 235
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAP-QNRCVKILEGHQHNFE-KNLLKCGWSPDGS 289
+ +PDG +L + G D + +W P AP + V + QH K + C W +
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVW---PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292
Query: 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHT 318
G+SDR + IW+ S L + H+
Sbjct: 293 ATGGGTSDRHIRIWNVCSGACLSAVDAHS 321
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 10/219 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
+T H + V ++ +N +++SGS I V + L GH + L W DG
Sbjct: 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242
Query: 113 SQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGT 166
+ S D + W G+ ++ +H V + CP + G+ D
Sbjct: 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQG 224
++W++ + Q+ ++ +S ++ +G N + +W L+G
Sbjct: 303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR 263
H + +++SPDG+ + + D L +W P R
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 68 AGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
+G V+A + D ++LW GD + ++ I + W +G+ + + ++
Sbjct: 115 SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173
Query: 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKY 185
WDV+ K+++ M H++ V S + ++ SGS G D+R + T
Sbjct: 174 WDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230
Query: 186 Q-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS----MTLQGHQDMITGMSLSPDGSY 240
Q + + ++ + +GG DN V VW GE T HQ + ++ P S
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 290
Query: 241 LLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS-- 295
+L G D + IW++ A C+ ++ H + WSP ++ +G
Sbjct: 291 VLATGGGTSDRHIRIWNVCSGA----CLSAVDAH-----SQVCSILWSPHYKELISGHGF 341
Query: 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ + IW + + +L GHT V + S ++D+ + L
Sbjct: 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 45/179 (25%)
Query: 183 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--DMITGMSLSPDGSY 240
+ Y + V +S S + +DN V +W G++ LQ Q + I+ ++ +G+Y
Sbjct: 104 NDYYLNLVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 161
Query: 241 LLTNGMDCKLCIWD------MRPYAPQNRCVKIL------------EGHQHNFEKNLLK- 281
L ++ +WD +R + V L GH H+ + + +
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 282 ------------CG--WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
CG W+PDG + +G +D +V +W + PG G V F
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 272
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/388 (21%), Positives = 137/388 (35%), Gaps = 94/388 (24%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-------------- 87
+T E + H +V+ + ++P GT IAS S D+ I +W+V
Sbjct: 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283
Query: 88 -------------------GDCKNFM---------VLKGHKNAILDLHWTTDGSQIISAS 119
NF+ V GH AI L + DG + SA
Sbjct: 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343
Query: 120 PDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRG------------------------ 154
+ + +WD+ TG + + H + + + +G
Sbjct: 344 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403
Query: 155 ---------PPLVVSGSDDGTA------KLWDMRQRGAIQTFPDKYQITAVSFSDASDKI 199
PL ++ S DG K + G + P Y + V+ S+ +
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV 463
Query: 200 YTGGIDNDVKVWDLRKGEVS-MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258
GG D+ V V+ L VS + H IT ++ S +G++L+ K+ PY
Sbjct: 464 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVI-----PY 518
Query: 259 APQNRCVKILEGHQHNFEKNLLKC-GWSPDGSKVTAGSSDRMVYIWDT---TSRRILYKL 314
+ N ++ + F + C WSPD ++ GS D V +W+ + I+ K
Sbjct: 519 SVANN-FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
Query: 315 PGHTGSVNESVFHATEPVIGSCSSDKQI 342
SVN SV E I S D I
Sbjct: 578 AHAMSSVN-SVIWLNETTIVSAGQDSNI 604
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV----LK--GHKNAILDLHWT 109
H V+++++NP G++ AS D I L++ K + LK H ++ L W+
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
DG++I SAS DKT++ W+V T K K + + +VS S +G
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 170 WDMRQRGAIQT--FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG-HQ 226
+ + G+I + ITA+S S +++ + + WD+ G + H
Sbjct: 309 VN-PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367
Query: 227 DMITGMSLSPDG 238
MITG+ + G
Sbjct: 368 TMITGIKTTSKG 379
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257
+I +G DN V +++ + T H + + +PDGS + G D + +++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN--- 218
Query: 258 YAPQNRCVKILEGHQHNFEKNLLKCG------WSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
+ E KN+ G WSPDG+K+ + S+D+ + IW+ + ++
Sbjct: 219 -GVDGTKTGVFEDDS---LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274
Query: 312 YKLP 315
+P
Sbjct: 275 KTIP 278
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 23/221 (10%)
Query: 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG----HKNAILDLH 107
+ T H K +P+G ASG ++ +W + +LK + D+
Sbjct: 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT---TQTTHILKTTIPVFSGPVKDIS 110
Query: 108 WTTDGSQI--ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVSGSD 163
W ++ +I + ++ + +TG + +NS PSR P ++SGSD
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR--PFRIISGSD 168
Query: 164 DGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFS-DASDKIYTGGIDNDVKVWDLRKGEVSMT 221
D T +++ TF + + + +V ++ D S TGG D + +++ G +
Sbjct: 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTKTGV 227
Query: 222 LQ-------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255
+ H + G++ SPDG+ + + D + IW++
Sbjct: 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-----NAILDLHW 108
T H + V + ++P +A+GS D + +W+++ + +++KG N+++ L+
Sbjct: 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592
Query: 109 TTDGSQIISASPDKTLRAWDV 129
TT I+SA D ++ W+V
Sbjct: 593 TT----IVSAGQDSNIKFWNV 609
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 78/241 (32%), Gaps = 62/241 (25%)
Query: 114 QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP--PLVVSGSDDGTAKLWD 171
+IIS S D T+ ++ K EH FV+S R P L S DGT L++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV---RYNPDGSLFASTGGDGTIVLYN 218
Query: 172 MRQRGAIQTFPDKY--------QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL- 222
F D + +++S KI + D +K+W++ +V T+
Sbjct: 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278
Query: 223 ------------------------------------------QGHQDMITGMSLSPDGSY 240
GH IT +S S DG
Sbjct: 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338
Query: 241 LLTNGMDCKLCIWDMRPYAPQNRC-----VKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295
L + + + WD+ NR ++ G + + +L W V AG
Sbjct: 339 LFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397
Query: 296 S 296
S
Sbjct: 398 S 398
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 6/207 (2%)
Query: 115 IISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+++ + D ++ W +G Q+ +M + +++S + G L V G+ +LWD+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDV 187
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITG 231
+Q+ ++ + S S S + +G + D+R E + TL GH + G
Sbjct: 188 QQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 246
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
+ +PDG +L + G D + +W P ++ HQ K + C W +
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV-KAVAWCPWQSNVLAT 305
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHT 318
G+SDR + IW+ S L + H+
Sbjct: 306 GGGTSDRHIRIWNVCSGACLSAVDAHS 332
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 68 AGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
+G V+A + D ++LW GD + ++ I + W +G+ + + ++
Sbjct: 126 SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 184
Query: 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKY 185
WDV+ K+++ M H++ V S + ++ SGS G D+R + T
Sbjct: 185 WDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHS 241
Query: 186 Q-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS----MTLQGHQDMITGMSLSPDGSY 240
Q + + ++ + +GG DN V VW GE T HQ + ++ P S
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 301
Query: 241 LLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS-- 295
+L G D + IW++ A C+ ++ H + WSP ++ +G
Sbjct: 302 VLATGGGTSDRHIRIWNVCSGA----CLSAVDAH-----SQVCSILWSPHYKELISGHGF 352
Query: 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ + IW + + +L GHT V + S ++D+ + L
Sbjct: 353 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 10/219 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
+T H + V ++ +N +++SGS I V + L GH + L W DG
Sbjct: 196 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 253
Query: 113 SQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSC--CPSRRGPPLVVSGSDDGT 166
+ S D + W G+ ++ +H V + CP + G+ D
Sbjct: 254 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 313
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQG 224
++W++ + Q+ ++ +S ++ +G N + +W L+G
Sbjct: 314 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 373
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR 263
H + +++SPDG+ + + D L +W P R
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 412
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 45/179 (25%)
Query: 183 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--DMITGMSLSPDGSY 240
+ Y + V +S S + +DN V +W G++ LQ Q + I+ ++ +G+Y
Sbjct: 115 NDYYLNLVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 172
Query: 241 LLTNGMDCKLCIWD------MRPYAPQNRCVKIL------------EGHQHNFEKNLLK- 281
L ++ +WD +R + V L GH H+ + + +
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 282 ------------CG--WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326
CG W+PDG + +G +D +V +W + PG G V F
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 283
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 50 IMLLTGHQSAVYTMKF---NPAGTVIASGSHDRDIFLWHVH-------GDCKNFMVLKGH 99
I + H+ V ++ NP + S D +F + H G+C + L+GH
Sbjct: 117 IEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGH 176
Query: 100 KNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAE-------HNSFVNSCCPS 151
+ L W + S ++SAS D T+ WD+ + K+ + H + V
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWH 236
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAVSFSDASDKIY-TGGIDN 206
L S +DD +WD R + ++ +SF+ S+ I TG D
Sbjct: 237 LLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADK 296
Query: 207 DVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDM 255
V +WDLR ++ + + + H+D I + SP +L ++G D +L +WD+
Sbjct: 297 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 37/254 (14%)
Query: 32 PQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGD 89
P P P+G+ +P + L GHQ Y + +NP +G ++ S S D I LW +
Sbjct: 158 PSKPDPSGEC------NPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAV 210
Query: 90 CKNFMVLK------GHKNAILDLHWTTDGSQII-SASPDKTLRAWDVE---TGKQIKKMA 139
K V+ GH + D+ W + S + D+ L WD T K +
Sbjct: 211 PKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD 270
Query: 140 EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPD-KYQITAVSFSDASD 197
H + VN + ++ +GS D T LWD+R + + +F K +I V +S ++
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 198 KIY-TGGIDNDVKVWDLRK--------------GEVSMTLQGHQDMITGMSLSPDGSYLL 242
I + G D + VWDL K E+ GH I+ S +P+ +++
Sbjct: 331 TILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 390
Query: 243 TN-GMDCKLCIWDM 255
+ D + +W M
Sbjct: 391 CSVSEDNIMQVWQM 404
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
R+++ P + H + V + FNP + ++A+GS D+ + LW + + HK
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 101 NAILDLHWTTDGSQIISAS-PDKTLRAWDVET--GKQIKKMAE------------HNSFV 145
+ I + W+ I+++S D+ L WD+ +Q + AE H + +
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
+ + P ++ S S+D ++W M +
Sbjct: 378 SDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-------EVSMTLQGHQDMITGMSLSP 236
K I +V++ + + G D+ V +W + ++ ++GH++ + G++ S
Sbjct: 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 237 DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296
DG YL T D + IW+ + C+ +L+ H + + + W P + + + S
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI----WHPSEALLASSSY 173
Query: 297 DRMVYIWDTTSR--RILYKLPGHTGSVNESVFHATEPVIGSCS 337
D V IW + L GH G+V S F TE V CS
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN------FMVLKGHKNAILDLH 107
T H+ A+ ++ + P +++A+GS D + +W +++GH+N + +
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 108 WTTDGSQIISASPDKTLRAWDV-ETGKQ---IKKMAEHNSFVNSCC--PSRRGPPLVVSG 161
W+ DG + + S DK++ W+ E+G++ I + EH+ V PS L+ S
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE---ALLASS 171
Query: 162 SDDGTAKLWDMRQRGAIQTFPDKYQITAV----------SFSDASDKIY---TGGIDNDV 208
S D T ++W + + D ++ AV S D ++ ++ +G D+ V
Sbjct: 172 SYDDTVRIW--------KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 209 KVW 211
+VW
Sbjct: 224 RVW 226
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF---MVLKGHKNAILDL 106
+ ++ GH++ V + ++ G +A+ S D+ +++W + + VL+ H + +
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159
Query: 107 HWTTDGSQIISASPDKTLRAW-DVETGKQ-IKKMAEHNSFV-NSCCPSRRGPPLVVSGSD 163
W + + S+S D T+R W D + + + + H V +S G + SGSD
Sbjct: 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219
Query: 164 DGTAKLW 170
D T ++W
Sbjct: 220 DSTVRVW 226
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTV--IASGSHDRDIFLWHVHGDCKN--------FMVLKGH 99
+ +L GH+ V++ F+ V + SGS D + +W GD ++ ++ H
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249
Query: 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ---IKKMAEHNSFVNSCCP--SRRG 154
K + ++ W +G I S D L ++ G+ K+ H + + G
Sbjct: 250 KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG 308
Query: 155 PPLVVSGSDDGTAKLWDMRQ 174
++ +G DDG W + +
Sbjct: 309 KTILATGGDDGIVNFWSLEK 328
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW-------DTTSRRILYKLPGH 317
+ +L+ H +K + W P S + AGS D V IW T +L + GH
Sbjct: 49 IDVLDETAH--KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH 106
Query: 318 TGSVNESVFHATEPVIGSCSSDKQIYLGE 346
V + + +CS DK +++ E
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 128/324 (39%), Gaps = 44/324 (13%)
Query: 56 HQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCK-NFMVLKG-----------HKNA 102
H + T+ P G + SG D I L+ + + ++ K H+ +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 103 ILDLHWTT-DGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVS 160
+ + W D S+S DKTL+ WD T + E + + P LV
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 161 GSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIY-TGGIDNDVKVWDLRK--- 215
G+ +L D++ + +I AVS+S D I T D+ VK+WD+R+
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 216 ---------GEVSMTLQ----GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262
G+ S ++ H + G+ + DG +LLT G D ++ +W+ +
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN----SSNG 277
Query: 263 RCVKILEGHQHNFEKNLLK----CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT 318
+ G N K LK CG S + V GS+ + ++ S + L GH
Sbjct: 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST---IAVYTVYSGEQITMLKGHY 334
Query: 319 GSVNESVFHATEPVIGSCSSDKQI 342
+V+ VF + + S S D I
Sbjct: 335 KTVDCCVFQSNFQELYSGSRDCNI 358
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 32/232 (13%)
Query: 57 QSAVYTMKFNPAGT---VIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDG 112
+ VY+ +P T ++A G+ + L + G C + +L+GH+ IL + W+
Sbjct: 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPRY 198
Query: 113 SQII-SASPDKTLRAWDVE------------TGKQIKKM----AEHNSFVNSCCPSRRGP 155
I+ +AS D ++ WDV GK+ + + HN VN C + G
Sbjct: 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258
Query: 156 PLVVSGSDDGTAKLWD-------MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208
L+ G+D+ +LW+ + G + K VS +S+ ++ + +
Sbjct: 259 HLLTVGTDN-RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-YGSTI 316
Query: 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP 260
V+ + GE L+GH + + L + DC + W Y P
Sbjct: 317 AVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 52 LLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVL-------------- 96
+L GH+ + + ++P ++A+ S D + LW V + L
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 97 -KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS---CCPSR 152
H + L +T+DG +++ D +R W+ G+ N+ VN C S+
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--------NTLVNYGKVCNNSK 292
Query: 153 RGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVS----------FSDASDKIYTG 202
+G VS A+ T QIT + F ++Y+G
Sbjct: 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352
Query: 203 GIDNDVKVW 211
D ++ W
Sbjct: 353 SRDCNILAW 361
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 124 LRAWDVETGKQIKKMAE-----HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ---R 175
++ WD+ +++ ++++ SC G L+V G + T +WD+ R
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTPR 132
Query: 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS 235
+ A++ S S ++ D ++ VWDL + QGH D + + +S
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192
Query: 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294
DG+ L T G+D + WD+R + R + QH+F + G+ P G + G
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLR----EGR-----QLQQHDFTSQIFSLGYCPTGEWLAVG 242
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 20/211 (9%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
LT A Y + +P V S D +I +W +H +GH + + + DG
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDG 195
Query: 113 SQIISASPDKTLRAWDVETGKQIKKM-AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
+++ + D T+R+WD+ G+Q+++ F CP+ G L V G + ++
Sbjct: 196 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT--GEWLAV-GMESSNVEVLH 252
Query: 172 MRQRGAIQTFPDKYQ-------ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224
+ + PDKYQ + ++ F+ + G DN + W G S+
Sbjct: 253 VNK-------PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSK 304
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255
+ +S D Y++T D K ++++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL----RKGEVS-MTLQGHQD 227
R I T + AV+ S+ + +YTGG VKVWD+ K VS + +
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
I L PDG L+ G L IWD+ P+ ++ + SPD
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------IKAELTSSAPACYALAISPD 152
Query: 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHT 318
+ SD + +WD ++ ++ + GHT
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 73/216 (33%), Gaps = 22/216 (10%)
Query: 106 LHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
H T DG Q + PD + +QI + H V C + P V
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVV--CAVTISNPTRHVYTGGK 71
Query: 165 GTAKLWDMRQRGAIQTFP-------DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG- 216
G K+WD+ G D Y + D I GG + + +WDL
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI-VGGEASTLSIWDLAAPT 130
Query: 217 -EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+ L +++SPD + D + +WD+ V+ +GH
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGA 186
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
+ S DG+K+ G D V WD R L
Sbjct: 187 SCIDI----SNDGTKLWTGGLDNTVRSWDLREGRQL 218
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 50 IMLLTGHQSAVYTMKFNPA---GTVIASGSHDRDIFLWHVHGDCKNF-MVLKGHKNAILD 105
I + + ++ + F+P G + +GS D+ W V + + H +LD
Sbjct: 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLD 91
Query: 106 LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC----CPSRRGPPLVVSG 161
+ W+ DGS++ +AS DKT + WD+ + + I ++A+H++ V + P+ V++G
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYS---CVMTG 147
Query: 162 SDDGTAKLWDMR 173
S D T K WD R
Sbjct: 148 SWDKTLKFWDTR 159
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 109 TTDGSQIISASPDKTLRAWDVE-TGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGT 166
T G+ +I+ S +R W+V+ +G+ I K + H V C S G V + S D T
Sbjct: 51 TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK-VFTASCDKT 109
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSFSDASDK--IYTGGIDNDVKVWDLRKGEVSMTLQG 224
AK+WD+ AIQ + + + A + + TG D +K WD R M LQ
Sbjct: 110 AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169
Query: 225 HQ-----DMITGMSLSPDGS-----YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273
+ D+I M++ Y L N I P Q+RCV I + Q+
Sbjct: 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI--ESPLKHQHRCVAIFKDKQN 226
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 227 DMITGMSLSPD---GSYLLTNGMDCKLCIW--DMRPYAPQNRCVKILEGHQHNFEKNLLK 281
D I +S SP G++L+ W D+R + Q+ I + Q + L
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGS-------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDV 92
Query: 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
C WS DGSKV S D+ +WD +S + +
Sbjct: 93 C-WSDDGSKVFTASCDKTAKMWDLSSNQAI 121
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 38/284 (13%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV-LKGHKNAILDLHWT--T 110
T H+ ++ + + GT +A+ S DR + ++ V + + L+GH+ + + W
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 111 DGSQIISASPDKTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVS-GSDDGTA 167
G+ + S S D+ + W E G K + A H+S VNS C + L+++ GS DG
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Query: 168 KLWDMRQRG--AIQTFPDKYQI--TAVSFSDAS-----------------DKIYTGGIDN 206
L G ++ + + I AVS++ A + +GG DN
Sbjct: 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN 189
Query: 207 DVKVWDLRKG---EVSMTLQGHQDMITGMSLSPD----GSYLLTNGMDCKLCIWDMRPYA 259
+K+W + + L+ H D + ++ +P S + + D ++ IW +
Sbjct: 190 LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249
Query: 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
K+L H F + WS + + D V +W
Sbjct: 250 SNTWSPKLL----HKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 70 TVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAW 127
+ +A GS DI LW+ D F+ G +I L + + +Q ++S + T R
Sbjct: 133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 128 DVETGKQIKKMAEHNSF------VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181
D + G ++ A ++ ++ SR +VV+G + G L +M +
Sbjct: 193 DFK-GNILRVFASSDTINIWFCSLDVSASSR----MVVTGDNVGNVILLNMDGKELWNLR 247
Query: 182 PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLR--KGEVSMTLQ-GHQDMITGMSLSPD 237
K ++T V+ + D + T +D VK+WDLR +G+ S H+ + SPD
Sbjct: 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 238 GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL--LKCGWSPDGSKVTAG 294
G+ LLT ++ ++ A Q C L H H ++L +K W P + + G
Sbjct: 308 GARLLTTDQKSEIRVYS----ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 70 TVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAW 127
+ +A GS DI LW+ D F+ G +I L + + +Q ++S + T R
Sbjct: 133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 128 DVETGKQIKKMAEHNSF------VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181
D + G ++ A ++ ++ SR +VV+G + G L +M +
Sbjct: 193 DFK-GNILRVFASSDTINIWFCSLDVSASSR----MVVTGDNVGNVILLNMDGKELWNLR 247
Query: 182 PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLR--KGEVSMTLQ-GHQDMITGMSLSPD 237
K ++T V+ + D + T +D VK+WDLR +G+ S H+ + SPD
Sbjct: 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 238 GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL--LKCGWSPDGSKVTAG 294
G+ LLT ++ ++ A Q C L H H ++L +K W P + + G
Sbjct: 308 GARLLTTDQKSEIRVYS----ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 70 TVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAW 127
+ +A GS DI LW+ D F+ G +I L + + +Q ++S + T R
Sbjct: 134 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 193
Query: 128 DVETGKQIKKMAEHNSF------VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181
D + G ++ A ++ ++ SR +VV+G + G L +M +
Sbjct: 194 DFK-GNILRVFASSDTINIWFCSLDVSASSR----MVVTGDNVGNVILLNMDGKELWNLR 248
Query: 182 PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLR--KGEVSMTLQ-GHQDMITGMSLSPD 237
K ++T V+ + D + T +D VK+WDLR +G+ S H+ + SPD
Sbjct: 249 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 238 GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL--LKCGWSPDGSKVTAG 294
G+ LLT ++ ++ A Q C L H H ++L +K W P + + G
Sbjct: 309 GARLLTTDQKSEIRVYS----ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 363
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 29/190 (15%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114
H S + +KF P+G + S S D + +W V D N L GH+ + D+ G
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 115 IISASPDKTLRAWDVETGKQI----KKMAEHNSFVNSCC-------------PSRRGP-- 155
++SAS D T+R W+ TG I +K H+ VNS S++
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDG-VNSIALFVGTDRQLHEISTSKKNNLE 251
Query: 156 -----PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS---DASDKIYTGGIDND 207
V++G G + ++ + P K+ + S + + ++ IY G +
Sbjct: 252 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 208 VKVWDLRKGE 217
+ WDLR E
Sbjct: 312 LAQWDLRSPE 321
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 79 RDIFLWHVHGDCK----NFMVLK----GHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130
R L GD K NF + + H + I L + G +IS+S D L+ W V+
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK 184
G + + H + V RG V+S S DGT +LW+ I TF K
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRK 219
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD----------GSQIISASP 120
V+ + D F +V KN +K HK +L D GS + A
Sbjct: 17 VLEENDENDDEFYINVD---KNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARL 73
Query: 121 D--KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR---QR 175
D L + G ++ K A++ + + RR + G+ +G K+ D QR
Sbjct: 74 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRR----FILGTTEGDIKVLDSNFNLQR 129
Query: 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS 235
Q +IT + F + + + + D +K+W ++ G TL GH+ +T +++
Sbjct: 130 EIDQAHVS--EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 236 PDGSYLLTNGMDCKLCIWD 254
G +L+ +D + +W+
Sbjct: 188 DRGRNVLSASLDGTIRLWE 206
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 12/148 (8%)
Query: 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257
+ G + D+KV D Q H IT + P G L+++ D +L IW ++
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD----TTSRRILYK 313
+ + L GH+ + G V + S D + +W+ TT K
Sbjct: 168 GSNP----RTLIGHR----ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 219
Query: 314 LPGHTGSVNESVFHATEPVIGSCSSDKQ 341
H G + ++F T+ + S+ K+
Sbjct: 220 ENPHDGVNSIALFVGTDRQLHEISTSKK 247
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 29/190 (15%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114
H S + +KF P+G + S S D + +W V D N L GH+ + D+ G
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 115 IISASPDKTLRAWDVETGKQI----KKMAEHNSFVNSCC-------------PSRRGP-- 155
++SAS D T+R W+ TG I +K H+ VNS S++
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDG-VNSIALFVGTDRQLHEISTSKKNNLE 254
Query: 156 -----PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS---DASDKIYTGGIDND 207
V++G G + ++ + P K+ + S + + ++ IY G +
Sbjct: 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 208 VKVWDLRKGE 217
+ WDLR E
Sbjct: 315 LAQWDLRSPE 324
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 79 RDIFLWHVHGDCK----NFMVLK----GHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130
R L GD K NF + + H + I L + G +IS+S D L+ W V+
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK 184
G + + H + V RG V+S S DGT +LW+ I TF K
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRK 222
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD----------GSQIISASP 120
V+ + D F +V KN +K HK +L D GS + A
Sbjct: 20 VLEENDENDDEFYINVD---KNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARL 76
Query: 121 D--KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR---QR 175
D L + G ++ K A++ + + RR + G+ +G K+ D QR
Sbjct: 77 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRR----FILGTTEGDIKVLDSNFNLQR 132
Query: 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS 235
Q +IT + F + + + + D +K+W ++ G TL GH+ +T +++
Sbjct: 133 EIDQAHVS--EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 236 PDGSYLLTNGMDCKLCIWD 254
G +L+ +D + +W+
Sbjct: 191 DRGRNVLSASLDGTIRLWE 209
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 12/148 (8%)
Query: 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257
+ G + D+KV D Q H IT + P G L+++ D +L IW ++
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD----TTSRRILYK 313
+ + L GH+ + G V + S D + +W+ TT K
Sbjct: 171 GSNP----RTLIGHR----ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222
Query: 314 LPGHTGSVNESVFHATEPVIGSCSSDKQ 341
H G + ++F T+ + S+ K+
Sbjct: 223 ENPHDGVNSIALFVGTDRQLHEISTSKK 250
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN--SCCPSRRGPP 156
H + + L +DG+Q +S D +++ WD+ +K H+S VN + CP +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--T 195
Query: 157 LVVSGSDDGTAKLWDMRQRG--------AIQTFPDKYQITAVSFSDASDKIYTGGIDN-D 207
+ +S +DG LWD R+ A T P T+V++ D + G + +
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIP-----TSVTWHPEKDDTFACGDETGN 250
Query: 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWD 254
V + +++ + + T H ITG++ S S +L + DC + + D
Sbjct: 251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCSSDKQIYL 344
DG++ +G D V +WD + + +L H+ VN + + + SC D +I L
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 208 VKVWDLRKGEVSMTLQ----GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR 263
V++W++ + E + + H D++ +S+ DG+ ++ G D + +WD+ A
Sbjct: 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA---- 172
Query: 264 CVKILEGHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305
+L+ + H+ E N + D ++ G R++ +WDT
Sbjct: 173 ---VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL-LWDT 211
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 50/251 (19%)
Query: 49 PIMLLTGHQSAVYT-MKFNP--AGTVIASGSHDRDIFLW---------HVHGDCKN-FMV 95
P++ TGH S+V T +KF+P + SG + +W V + K+ F V
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 114
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDK----TLRAWDVETGKQIKKMAEHNSFVNSCCPS 151
L G I D+ W +G ++ + +WD +G + +++ H+ +N+C
Sbjct: 115 LAG---PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ------------ITAVSFS-DASDK 198
+ P ++ DDG+ + Q P K+ + V FS D+ +
Sbjct: 170 QSRPMRSMTVGDDGSVVFY--------QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 221
Query: 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG--MSLS-PDGSYLLTNGMDCKLCIWDM 255
+ T G D + +D + GE ++ Q+ + G +LS D T G D + +WD+
Sbjct: 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Query: 256 RPYAPQNRCVK 266
++CV+
Sbjct: 282 ----TTSKCVQ 288
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129
++A+GS D +IF++ V K L HK+ + +L W T S ++S+ D ++ W+V
Sbjct: 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 612
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 60/206 (29%)
Query: 58 SAVYTMKFNP-AGTVIASGSHDRDI---------FLWHVHGDCKNFMVLKGHKNAILDLH 107
S V ++F+P +G + + DR I FL ++ D + + I L
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV------QGGIFALS 260
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
W D + + D T+R WDV T K ++K
Sbjct: 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWT---------------------------- 291
Query: 168 KLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227
D +Q G Q+ V+ + +I + +D + ++L EV T+ GH
Sbjct: 292 --LDKQQLG-------NQQVGVVATGNG--RIISLSLDGTLNFYELGHDEVLKTISGHNK 340
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIW 253
IT ++++P L++ D ++ W
Sbjct: 341 GITALTVNP----LISGSYDGRIMEW 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 50/251 (19%)
Query: 49 PIMLLTGHQSAVYT-MKFNP--AGTVIASGSHDRDIFLW---------HVHGDCKN-FMV 95
P++ TGH S+V T +KF+P + SG + +W V + K+ F V
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 114
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDK----TLRAWDVETGKQIKKMAEHNSFVNSCCPS 151
L G I D+ W +G ++ + +WD +G + +++ H+ +N+C
Sbjct: 115 LAG---PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ------------ITAVSFS-DASDK 198
+ P + DDG+ + Q P K+ + V FS D+ +
Sbjct: 170 QSRPXRSXTVGDDGSVVFY--------QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 221
Query: 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG--MSLS-PDGSYLLTNGMDCKLCIWDM 255
+ T G D + +D + GE ++ Q+ + G +LS D T G D + +WD+
Sbjct: 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Query: 256 RPYAPQNRCVK 266
++CV+
Sbjct: 282 ----TTSKCVQ 288
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129
++A+GS D +IF++ V K L HK+ + +L W T S ++S+ D ++ W+V
Sbjct: 555 LVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 612
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 60/206 (29%)
Query: 58 SAVYTMKFNP-AGTVIASGSHDRDI---------FLWHVHGDCKNFMVLKGHKNAILDLH 107
S V ++F+P +G + + DR I FL ++ D + + I L
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV------QGGIFALS 260
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
W D + + D T+R WDV T K ++K
Sbjct: 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWT---------------------------- 291
Query: 168 KLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227
D +Q G Q+ V+ + +I + +D + ++L EV T+ GH
Sbjct: 292 --LDKQQLG-------NQQVGVVATGNG--RIISLSLDGTLNFYELGHDEVLKTISGHNK 340
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIW 253
IT ++++P L++ D ++ W
Sbjct: 341 GITALTVNP----LISGSYDGRIXEW 362
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155
L GH I L + ++SAS D TLR W G H+ + S S G
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA--SWVGD 300
Query: 156 PLVVSGSDDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR 214
V+S S DG+ +LW ++Q + + D I A S K +D V V+DL+
Sbjct: 301 DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Query: 215 K-GEVSMTLQGHQDMI 229
K S +L G++D I
Sbjct: 361 KLNSKSRSLYGNRDGI 376
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 19/244 (7%)
Query: 38 NGKQRTSSLESPIM-LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV-HGDCKNFMV 95
NG+ R + ++ +L H++ + ++K+N GT I S + LW+V G
Sbjct: 129 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188
Query: 96 LK-------------GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHN 142
LK G + +D+ W D +I P + + + K+ H+
Sbjct: 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG-PKGAIFVYQITEKTPTGKLIGHH 247
Query: 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202
+ S L++S SDDGT ++W + F Q + DK+ +
Sbjct: 248 GPI-SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISC 306
Query: 203 GIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261
+D V++W L++ +++++ + G +S DG MD ++ ++D++ +
Sbjct: 307 SMDGSVRLWSLKQNTLLALSIVDGVPIFAG-RISQDGQKYAVAFMDGQVNVYDLKKLNSK 365
Query: 262 NRCV 265
+R +
Sbjct: 366 SRSL 369
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 35 PGPNGKQRTSSL--ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN 92
PGP G + ++P L GH + ++FN ++ S S D + +WH G+ +
Sbjct: 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH-GGNGNS 281
Query: 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130
GH +I+ W D ++IS S D ++R W ++
Sbjct: 282 QNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLK 318
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 26/226 (11%)
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVS 160
N + L W+ DG+ I++ + LR W+ +TG + + H + + S ++ G ++S
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH-IIS 166
Query: 161 GSDDGTAKLWDMRQRGAIQTFPDKY----QITAVSFS-DAS----------DKIYTGGID 205
+ LW++ +Q F K I A + S D S DK G
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265
+ V+ + + + L GH I+ + + LL+ D L IW QN C
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN-C- 284
Query: 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
GH ++++ W D KV + S D V +W +L
Sbjct: 285 --FYGHS----QSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLL 323
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Query: 44 SSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAI 103
+S E P+ L GHQ V ++ F V+ SGS D+ +W N L+ H ++
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWKEGSLVYN---LQAHNASV 145
Query: 104 LDLHWTT-DGSQIISASPDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSG 161
D + ++ ++AS DKT++ W + K IK + HN V G +S
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGH--FISC 201
Query: 162 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221
S+DG KL D ++T+ + I + G D V++W G +
Sbjct: 202 SNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQV 261
Query: 222 L 222
+
Sbjct: 262 I 262
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 8/162 (4%)
Query: 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSR 152
L GH+ + L + DG +IS S DKT + W + G + + HN+ V
Sbjct: 97 LYTLIGHQGNVCSLSFQ-DGV-VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVS 152
Query: 153 RGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG-GIDNDVKVW 211
++ S D T KLW + I+TF + + D + D +K+
Sbjct: 153 FSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210
Query: 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253
D G+V T +GH+ + + L P+G +++ G D + IW
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDCKNFMVLKGHKNAILDLHWTTDGS 113
GH+S VY +K P G +++ G DR + +W +G K + L +I + ++G
Sbjct: 223 GHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAI--SIWSVDCXSNG- 278
Query: 114 QIISASPDKTLRAWDVETGK 133
II S D +R + E +
Sbjct: 279 DIIVGSSDNLVRIFSQEKSR 298
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 121/302 (40%), Gaps = 41/302 (13%)
Query: 68 AGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
+GTV A+ S D + LW + D + + + DL W+ + I A + +L
Sbjct: 34 SGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93
Query: 127 WDV-ETGKQIKKMAE---HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP 182
+ E I MA H+S V + + + ++ SG ++G +WDM + P
Sbjct: 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK---CTESP 150
Query: 183 DKY-------------QITAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTL------ 222
Y ++ +++++ + ++ + G N +WDL+ + + L
Sbjct: 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210
Query: 223 QGHQDMITGMSLSPDGSYLLTNGM----DCKLCIWDMRPYAPQNRCVKIL-EGHQHNFEK 277
G + ++ + P S + D + IWD+R N ++ L +GHQ K
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR---NANTPLQTLNQGHQ----K 263
Query: 278 NLLKCGWS-PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336
+L W D + + D V +W+ S L + P ++ F P + +C
Sbjct: 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323
Query: 337 SS 338
+S
Sbjct: 324 AS 325
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 66 NPAGTVIASGS-HDRDIFLWHVHGDCKNFMVL-KGHKNAILDLHWT-TDGSQIISASPDK 122
N A+GS +D I +W + L +GH+ IL L W D ++S+ D
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 123 TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
T+ W+ E+ +Q+ + ++ + P L S D
Sbjct: 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD 327
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDC------KNFM 94
+T ++ + L+ GH + V + + P VIASGS D + +W + + +
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 95 VLKGHKNAILDLHW-TTDGSQIISASPDKTLRAWDVETGKQIKKMAE--HNSFVNSCCPS 151
L+GH + + W T + ++SA D + WDV TG + + H + S S
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-----YQITAVSFSDASDKIYTGGI-- 204
R G L+ + D ++ + R +G + D+ + AV S+ KI T G
Sbjct: 186 RDG-ALICTSCRDKRVRVIEPR-KGTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSR 241
Query: 205 --DNDVKVWDLRKGEVSMTLQ 223
+ V +WD + E ++LQ
Sbjct: 242 MSERQVALWDTKHLEEPLSLQ 262
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 46/221 (20%)
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
KN ++ GH +LD+ W +I S S D T+ W++ G + + E
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE--------- 122
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P + + G ++ G + P A + + + G DN +
Sbjct: 123 -----PVITLEGH---------TKRVGIVAWHPT-----------AQNVLLSAGXDNVIL 157
Query: 210 VWDLRKGEVSMTL--QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267
VWD+ G +TL H D I + S DG+ + T+ D ++ R P+ V
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV-----RVIEPRKGTVVA 212
Query: 268 LEGHQHNFEKNLLKCGWSPDGSKVTAG---SSDRMVYIWDT 305
+ H + + S +G +T G S+R V +WDT
Sbjct: 213 EKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDT 252
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Query: 54 TGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTT 110
GH +A+ +KF+P ++ S S D + LW++ D F ++GH++ +L +
Sbjct: 148 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 207
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
G +I+S D +L+ W + + + + + E + P++ P +
Sbjct: 208 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN----PNKTNRPFISQ-----KIHFP 258
Query: 171 DMRQRGAIQTFPDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
D R + + D + I + S +A G +++D+ ++ E ++T+ G
Sbjct: 259 DFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDID--KIKPSESNVTILGR 316
Query: 226 QDM----ITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKN 278
D I M S D L KL +WD+ P +C + H
Sbjct: 317 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAA 373
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + +S D S + A D ++ WD
Sbjct: 374 IRQTSFSRDSSILIAVCDDASIWRWD 399
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 30/243 (12%)
Query: 12 NALSTVSARPMEWSTVPYSAPQAPGPNGKQRTS--------SLESPIMLLTGHQSAVYTM 63
+A+S S E P + P APG + S + L H ++ +
Sbjct: 1 DAVSIESGTNTERPDTPTNTPNAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGV 60
Query: 64 KFNPAGT-----VIAS-GSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLH-----WTTDG 112
+FN V A+ GS+ ++ H G+ + +L+ + +A D + WT D
Sbjct: 61 QFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---LLQSYVDADADENFYTCAWTYDS 117
Query: 113 SQ----IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
+ + A +R + T + IK H + +N R P L++S S D +
Sbjct: 118 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 177
Query: 169 LWDMRQRGAIQTF----PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224
LW+++ + F + ++ + + +KI + G+D+ +K+W + + ++
Sbjct: 178 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 237
Query: 225 HQD 227
D
Sbjct: 238 SYD 240
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 265 VKILEGH-QHNFEKNLLKCGWSPDGSK----VTAGSSDRMVYIWDTTSRRILYKLPGHTG 319
+++L+ + + ++N C W+ D + + S ++ I + + + + GH
Sbjct: 93 IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 152
Query: 320 SVNESVFHATEP-VIGSCSSDKQIYLGEI 347
++NE FH +P ++ S S D + L I
Sbjct: 153 AINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 5/161 (3%)
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLV 158
H + + + + G+Q +S S D ++ WD+ + H + V S +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 159 VSGSDDGTAKLWDMR---QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN-DVKVWDLR 214
+S S+D LWD R I Y T++++ +++ G +N V + D +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245
Query: 215 KGEVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWD 254
++ H +TG+ SP +L + DC L + D
Sbjct: 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCSSDKQIYL 344
G++ +GS D + +WD + +L H V + + V SCS D +I L
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Query: 54 TGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTT 110
GH +A+ +KF+P ++ S S D + LW++ D F ++GH++ +L +
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 170
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
G +I+S D +L+ W + + + + + E + P++ P +
Sbjct: 171 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN----PNKTNRPFISQ-----KIHFP 221
Query: 171 DMRQRGAIQTFPDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
D R + + D + I + S +A G +++D+ ++ E ++T+ G
Sbjct: 222 DFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDID--KIKPSESNVTILGR 279
Query: 226 QDM----ITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKN 278
D I M S D L KL +WD+ P +C + H
Sbjct: 280 FDYSQCDIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAA 336
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + +S D S + A D ++ WD
Sbjct: 337 IRQTSFSRDSSILIAVCDDASIWRWD 362
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQ 186
T + IK H + +N R P L++S S D +LW+++ + F + +
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDL 213
+ + + +KI + G+D+ +K+W +
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 276 EKNLLKCGWSPDGSK----VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
++N C W+ D + + S ++ I + + + + GH ++NE FH +P
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 332 -VIGSCSSDKQIYLGEI 347
++ S S D + L I
Sbjct: 128 NLLLSVSKDHALRLWNI 144
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Query: 54 TGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTT 110
GH +A+ +KF+P ++ S S D + LW++ D F ++GH++ +L +
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 166
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
G +I+S D +L+ W + + + + + E + P++ P +
Sbjct: 167 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN----PNKTNRPFISQ-----KIHFP 217
Query: 171 DMRQRGAIQTFPDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
D R + + D + I + S +A G +++D+ ++ E ++T+ G
Sbjct: 218 DFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDID--KIKPSESNVTILGR 275
Query: 226 QDM----ITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKN 278
D I M S D L KL +WD+ P +C + H
Sbjct: 276 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAA 332
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + +S D S + A D ++ WD
Sbjct: 333 IRQTSFSRDSSILIAVCDDASIWRWD 358
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQ 186
T + IK H + +N R P L++S S D +LW+++ + F + +
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 158
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDL 213
+ + + +KI + G+D+ +K+W +
Sbjct: 159 VLSADYDLLGEKIMSCGMDHSLKLWRI 185
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 276 EKNLLKCGWSPDGSK----VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
++N C W+ D + + S ++ I + + + + GH ++NE FH +P
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 123
Query: 332 -VIGSCSSDKQIYLGEI 347
++ S S D + L I
Sbjct: 124 NLLLSVSKDHALRLWNI 140
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDC------KNFM 94
+T ++ + L+ GH + V + + P VIASGS D + +W + + +
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 95 VLKGHKNAILDLHW-TTDGSQIISASPDKTLRAWDVETGKQIKKMAE--HNSFVNSCCPS 151
L+GH + + W T + ++SA D + WDV TG + + H + S S
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-----YQITAVSFSDASDKIYTGGI-- 204
R G L+ + D ++ + R +G + D+ + AV S+ KI T G
Sbjct: 186 RDG-ALICTSCRDKRVRVIEPR-KGTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSR 241
Query: 205 --DNDVKVWDLRKGEVSMTLQ 223
+ V +WD + E ++LQ
Sbjct: 242 MSERQVALWDTKHLEEPLSLQ 262
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 46/221 (20%)
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
KN ++ GH +LD+ W +I S S D T+ W++ G + + E
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE--------- 122
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P + + G ++ G + P A + + + G DN +
Sbjct: 123 -----PVITLEGH---------TKRVGIVAWHPT-----------AQNVLLSAGCDNVIL 157
Query: 210 VWDLRKGEVSMTL--QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267
VWD+ G +TL H D I + S DG+ + T+ D + +R P+ V
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR-----VRVIEPRKGTVVA 212
Query: 268 LEGHQHNFEKNLLKCGWSPDGSKVTAG---SSDRMVYIWDT 305
+ H + + S +G +T G S+R V +WDT
Sbjct: 213 EKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDT 252
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Query: 54 TGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTT 110
GH +A+ +KF+P ++ S S D + LW++ D F ++GH++ +L +
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
G +I+S D +L+ W + + + + + E + P++ P +
Sbjct: 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN----PNKTNRPFISQ-----KIHFP 222
Query: 171 DMRQRGAIQTFPDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
D R + + D + I + S +A G +++D+ ++ E ++T+ G
Sbjct: 223 DFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDID--KIKPSESNVTILGR 280
Query: 226 QDM----ITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKN 278
D I M S D L KL +WD+ P +C + H
Sbjct: 281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAA 337
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + +S D S + A D ++ WD
Sbjct: 338 IRQTSFSRDSSILIAVCDDASIWRWD 363
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQ 186
T + IK H + +N R P L++S S D +LW+++ + F + +
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDL 213
+ + + +KI + G+D+ +K+W +
Sbjct: 164 VLSADYDLLGEKIMSCGMDHSLKLWRI 190
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 276 EKNLLKCGWSPDGSK----VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
++N C W+ D + + S ++ I + + + + GH ++NE FH +P
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 128
Query: 332 -VIGSCSSDKQIYLGEI 347
++ S S D + L I
Sbjct: 129 NLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Query: 54 TGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTT 110
GH +A+ +KF+P ++ S S D + LW++ D F ++GH++ +L +
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 170
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
G +I+S D +L+ W + + + + + E + P++ P +
Sbjct: 171 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN----PNKTNRPFISQ-----KIHFP 221
Query: 171 DMRQRGAIQTFPDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
D R + + D + I + S +A G +++D+ ++ E ++T+ G
Sbjct: 222 DFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDID--KIKPSESNVTILGR 279
Query: 226 QDM----ITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKN 278
D I M S D L KL +WD+ P +C + H
Sbjct: 280 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAA 336
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + +S D S + A D ++ WD
Sbjct: 337 IRQTSFSRDSSILIAVCDDASIWRWD 362
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 108 WTTDGSQ----IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
WT D + + A +R + T + IK H + +N R P L++S S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 164 DGTAKLWDMRQRGAIQTF----PDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213
D +LW+++ + F + ++ + + +KI + G+D+ +K+W +
Sbjct: 136 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 276 EKNLLKCGWSPDGSK----VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
++N C W+ D + + S ++ I + + + + GH ++NE FH +P
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 332 -VIGSCSSDKQIYLGEI 347
++ S S D + L I
Sbjct: 128 NLLLSVSKDHALRLWNI 144
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 44 SSLESPIMLL---TGHQSAVYTMKFNP-AGTVIASGSHDRD---IFLWHV-HGDCKNFMV 95
S+ E P ++ G V+ K+ P + + G+ R I L+ + HGD K
Sbjct: 2 SAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE 61
Query: 96 LKGHKNAILDLHWTTDGSQIISASPD--KTLRAWDVETGKQ-IKKMAEHNSFVNSCCPSR 152
++ K T Q A+ D L W++E + + + H +N+
Sbjct: 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121
Query: 153 RG-----PPLVVSGSDDGTAKLWDMRQRG-------AIQTFPDKYQITAVSFSDA---SD 197
P +V+GS DGT K+WD RQ+ +Q +K V+F +A +
Sbjct: 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-ENKRDCWTVAFGNAYNQEE 180
Query: 198 KIYTGGIDN-DVKVWDLRKGEVSMTLQGHQDMITGM-SLSPDG-----SYLLTNGMDCKL 250
++ G DN D+K++DLR +M L+ ++ G+ SL D + L+ ++ K
Sbjct: 181 RVVCAGYDNGDIKLFDLR----NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236
Query: 251 CIWDMRPYAP 260
++DMR P
Sbjct: 237 HVFDMRTQHP 246
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 31/225 (13%)
Query: 72 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAI------LDLHWTTDGSQIISASPDKTLR 125
+A+G ++ +W++ +KGHK I L +I++ S D T++
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 126 AWD-------VETGKQIKKMAEHN----SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174
WD V + ++ + + +F N+ R +V +G D+G KL+D+R
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER---VVCAGYDNGDIKLFDLRN 199
Query: 175 RGAIQTFPDKYQITAVSFSD---ASDKIYTGGIDNDVKVWDLR-----KGEVSMTLQGHQ 226
K + ++ F + +K+ ++ V+D+R KG S++ + H+
Sbjct: 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK 259
Query: 227 DMITGMSLSPDGSYL-LTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
+ + P L LT G L +W P R K EG
Sbjct: 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYE--YPIQRSKKDSEG 302
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 98/240 (40%), Gaps = 34/240 (14%)
Query: 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC---CPSR 152
L GH+ + + + +G + S S D + W G+++ + H + S C ++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 153 RGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK--- 209
V+GS D + KLWD+ + T+ + V FS + + +DN +K
Sbjct: 88 ----YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN-YFLAILDNVMKNPG 142
Query: 210 ---VWDLRKGEVSMTLQG-----------HQ--DMITGMSLSPDGSYLLTNGMDCKLCIW 253
++++ + + L H+ D T S G Y++ D K+ +
Sbjct: 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313
D+ + V ++ H EK++ +SPD + S D ++ D ++ ++L K
Sbjct: 203 DV---SNNYEYVDSIDLH----EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 21/222 (9%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH-VHGDCKNFMVLKGHKNAILDLHWTTD 111
LTGH+ + +K+N G ++ S S D +W+ ++G+ L GH I +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCF 85
Query: 112 GSQIISASPDKTLRAWDVETGKQI---KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
++ S D +++ WDV G+ + K S C + L + G+
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 169 LWDMRQRGA--------------IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR 214
++++ + A I T T +S I G D + +D+
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 215 KG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255
E ++ H+ I+ M SPD +Y +T+ D + D+
Sbjct: 206 NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 114 QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173
+I++ D + + + + ++ + +S R P ++ S G K+WD R
Sbjct: 162 EIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSI-GQLKIWDFR 220
Query: 174 QRG-----AIQTFPDKYQITAVS-FSDASDKIYTGGIDNDVKVWDLRKGEVSMT-LQGHQ 226
Q+G + D+ + V + + TGG D + +WD+R+G + ++ L+ H+
Sbjct: 221 QQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHE 280
Query: 227 DMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQ 261
+ + P +L T D L WD P+
Sbjct: 281 AEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPE 316
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDL 106
S I+ LTG + ++ + +P V+A+G D + +W V +LK H+ + ++
Sbjct: 227 SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV 286
Query: 107 HW-TTDGSQIISASPDKTLRAWDVET 131
H+ ++ + + S D +L WD T
Sbjct: 287 HFHPSNPEHLFTCSEDGSLWHWDAST 312
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 194 DASDKIYTGGIDNDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251
DA++ +Y GI + +W + G + + +Q M TG++L +G L T D +L
Sbjct: 150 DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELI 209
Query: 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM---VYIWDTTSR 308
D +R + +G +H F S D ++ A +D V + DT +
Sbjct: 210 TIDTADNKILSRKKLLDDGKEHFF------INISLDTARQRAFITDSKAAEVLVVDTRNG 263
Query: 309 RILYKLPG 316
IL K+
Sbjct: 264 NILAKVAA 271
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 194 DASDKIYTGGIDNDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251
DA++ +Y GI + +W + G + + +Q TG++L +G L T D +L
Sbjct: 150 DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKXSTGLALDSEGKRLYTTNADGELI 209
Query: 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM---VYIWDTTSR 308
D +R + +G +H F S D ++ A +D V + DT +
Sbjct: 210 TIDTADNKILSRKKLLDDGKEHFF------INISLDTARQRAFITDSKAAEVLVVDTRNG 263
Query: 309 RILYKLPG 316
IL K+
Sbjct: 264 NILAKVAA 271
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 28/299 (9%)
Query: 60 VYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDL---HWTTDGSQ 114
V +++++P T +A GS DI LW K +F+ G +AI + + T+
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNS--FVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ S TLR + +G I+ A+ +S + C ++ +G G L +
Sbjct: 136 VSSIRGATTLRDF---SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIY-TGGIDNDVKVWDLR--KGEVSMTLQ-GHQDM 228
+ K ++T F+ D + T +D VK+WDLR K + S + H+
Sbjct: 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKP 252
Query: 229 ITGMSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
+ +P D + LLT ++ ++ ++ ++ I+ H+ +K W P
Sbjct: 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI--IIHPHRQFQHLTPIKATWHPM 310
Query: 288 GSKVTAG---------SSDRMVYIWDTTSRRILYKL--PGHTGSVNESVFHATEPVIGS 335
+ AG + R + I+D S ++++L P G ++ + F T V+ S
Sbjct: 311 YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 28/299 (9%)
Query: 60 VYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDL---HWTTDGSQ 114
V +++++P T +A GS DI LW K +F+ G +AI + + T+
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 134
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNS--FVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ S TLR + +G I+ A+ +S + C ++ +G G L +
Sbjct: 135 VSSIRGATTLRDF---SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 191
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIY-TGGIDNDVKVWDLR--KGEVSMTLQ-GHQDM 228
+ K ++T F+ D + T +D VK+WDLR K + S + H+
Sbjct: 192 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKP 251
Query: 229 ITGMSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
+ +P D + LLT ++ ++ ++ ++ I+ H+ +K W P
Sbjct: 252 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI--IIHPHRQFQHLTPIKATWHPM 309
Query: 288 GSKVTAG---------SSDRMVYIWDTTSRRILYKL--PGHTGSVNESVFHATEPVIGS 335
+ AG + R + I+D S ++++L P G ++ + F T V+ S
Sbjct: 310 YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 368
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 222 LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKILEGHQHNFEKNL 279
L+ H +TG+ +PD + ++T G D +W + R + P ++I N
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI------NRAARC 101
Query: 280 LKCGWSPDGSKVTAGSSDRMVYI 302
++ W+P+ K GS R++ I
Sbjct: 102 VR--WAPNEKKFAVGSGSRVISI 122
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
N+ V++ E +HN + + W+PD +++ +DR Y+W R
Sbjct: 40 NKWVQVHELKEHNGQVTGID--WAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 222 LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKILEGHQHNFEKNL 279
L+ H +TG+ +PD + ++T G D +W + R + P ++I N
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI------NRAARC 101
Query: 280 LKCGWSPDGSKVTAGSSDRMVYI 302
++ W+P+ K GS R++ I
Sbjct: 102 VR--WAPNEKKFAVGSGSRVISI 122
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
N+ V++ E +HN + + W+PD +++ +DR Y+W R
Sbjct: 40 NKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|1JMX|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
Dehydrogenase From Pseudomonas Putida
pdb|1JMZ|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
Dehydrogenase From Pseudomonas Putida With Inhibitor
Length = 349
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 128 DVETGK-QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ 186
D++TGK ++ A+ + S + P + G + AK +D++QR I+ +
Sbjct: 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GVLNRLAK-YDLKQRKLIKAANLDHT 296
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWD 212
V+F DK+Y GG ND+ V++
Sbjct: 297 YYCVAFDKKGDKLYLGGTFNDLAVFN 322
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 111 DGSQIISASPDKTLRA--WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
DG I+ P + + +D + Q H+ C RGP VV +D A
Sbjct: 77 DGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGP-FVVYDPNDPHAN 135
Query: 169 LWDMRQRGAIQTFPDKYQITA---VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
L+D+ + T D Y + A F +D G+ +S+T +G
Sbjct: 136 LYDVDDESTVITLADWYHVAAKLGPRFPKGADSTLINGLGRSTSTPTADLAVISVT-KGK 194
Query: 226 QDMITGMSLSPDGSYLLT 243
+ +SLS D +Y +
Sbjct: 195 RYRFRLVSLSCDPNYTFS 212
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 17/121 (14%)
Query: 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWT---------TDGSQIISASPDKTLRA--WD 128
D F +V + NF +LK +HW DG ++ P + +D
Sbjct: 42 DQFQLNVINNLTNFTMLKS-----TSVHWHGFFQKGTNWADGPAFVNQCPIAAGSSFLYD 96
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
T Q H+ C RGP VV +D +A L+D+ + T D Y
Sbjct: 97 FSTPIQAGTFWYHSHLSTQYCDGDRGP-FVVYDPNDPSANLYDVDNLNTVITLTDWYHTA 155
Query: 189 A 189
A
Sbjct: 156 A 156
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 111 DGSQIISASPDKTLRA--WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
DG ++ P T A +D + Q H+ C RGP +VV +D A
Sbjct: 77 DGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGP-IVVYDPNDPHAS 135
Query: 169 LWDMRQRGAIQTFPDKYQITA 189
L+D+ + T D Y + A
Sbjct: 136 LYDVDDDSTVITLADWYHLAA 156
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 111 DGSQIISASPDKTLRA--WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
DG ++ P T A +D + Q H+ C RGP +VV +D A
Sbjct: 77 DGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGP-IVVYDPNDPHAS 135
Query: 169 LWDMRQRGAIQTFPDKYQITA 189
L+D+ + T D Y + A
Sbjct: 136 LYDVDDDSTVITLADWYHLAA 156
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 175 RGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
+ ++ F + ++SF+D+ + + + G D ++ WD++ E TL H D I
Sbjct: 292 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEH 141
H + ++ L + G + SA D LR WDV+T ++I + H
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 175 RGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
+ ++ F + ++SF+D+ + + + G D ++ WD++ E TL H D I
Sbjct: 282 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEH 141
H + ++ L + G + SA D LR WDV+T ++I + H
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDK-- 198
H+ F C RGP +V+ +D A L+D I T D Y I A S A+
Sbjct: 109 HSHFGTQYCDGLRGP-MVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQGAAQPDA 167
Query: 199 -------IYTGGIDNDVKVWDLRKGE 217
Y GG ++ + ++ +G+
Sbjct: 168 TLINGKGRYVGGPAAELSIVNVEQGK 193
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDK-- 198
H+ F C RGP +V+ +D A L+D I T D Y I A S A+
Sbjct: 109 HSHFGTQYCDGLRGP-MVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQGAAQPDA 167
Query: 199 -------IYTGGIDNDVKVWDLRKGE 217
Y GG ++ + ++ +G+
Sbjct: 168 TLINGKGRYVGGPAAELSIVNVEQGK 193
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 8/174 (4%)
Query: 111 DGSQIISASPDKTLRA--WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
DG ++ P T A +D + Q H+ C RGP +VV D
Sbjct: 77 DGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGP-IVVYDPQDPHKS 135
Query: 169 LWDMRQRGAIQTFPDKYQITAVSFSDA--SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ 226
L+D+ + T D Y + A S +D G+ + + +++T +G +
Sbjct: 136 LYDVDDDSTVITLADWYHLAAKVGSPVPTADATLINGLGRSIDTLNADLAVITVT-KGKR 194
Query: 227 DMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKN 278
+SLS D +++ + +G + D PQ ++I +++F N
Sbjct: 195 YRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLN 248
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK----NAILDL 106
+L+ H + V ++ N G ++A+ S D + V +V + + +I+D+
Sbjct: 173 VLVKAHANPVKMVRLNRKGDMVATCSQDGTLI--RVFQTDNGVLVREFRRGLDRTSIIDM 230
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKK 137
W+ DGS++ S TL ++V + K+
Sbjct: 231 RWSPDGSKLAVVSDKWTLHVFEVFNDAENKR 261
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 24/159 (15%)
Query: 49 PIMLLTGHQSAVYTMKFNPAGTVIASGS-------HDRDIFLWHVHGDCKNFMVLKGHKN 101
P+ LT +AV F+ V+ G+ + D F +V + N +LK
Sbjct: 4 PVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTS- 62
Query: 102 AILDLHWT---------TDGSQIISASPDKTLRA--WDVETGKQIKKMAEHNSFVNSCCP 150
+HW DG I+ P + + +D + Q H+ C
Sbjct: 63 ----IHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCD 118
Query: 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA 189
RGP VV +D A L+D+ + T D Y + A
Sbjct: 119 GLRGP-FVVYDPNDPAADLYDVDNDDTVITLVDWYHVAA 156
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 111 DGSQIISASPDKTLRA--WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168
DG ++ P + + +D + Q H+ C RGP VV +D A
Sbjct: 77 DGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGP-FVVYDPNDPHAS 135
Query: 169 LWDMRQRGAIQTFPDKYQITA---VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
L+D+ + T D Y + A F SD G+ + + +T QG
Sbjct: 136 LYDIDNDDTVITLADWYHVAAKLGPRFPFGSDSTLINGLGRTTGIAPSDLAVIKVT-QGK 194
Query: 226 QDMITGMSLSPDGSYLLT 243
+ +SLS D ++ +
Sbjct: 195 RYRFRLVSLSCDPNHTFS 212
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG 154
+ A+L+L T+GSQ A D +R WDV+ + + + C +++G
Sbjct: 136 QRRALLNLIGMTNGSQGSQAGRDGVVRVWDVKNAELLNNQFGTMPSLTLACLTKQG 191
>pdb|1FSL|A Chain A, Ferric Soybean Leghemoglobin Complexed With Nicotinate
pdb|1FSL|B Chain B, Ferric Soybean Leghemoglobin Complexed With Nicotinate
pdb|1BIN|A Chain A, Leghemoglobin A (Acetomet)
pdb|1BIN|B Chain B, Leghemoglobin A (Acetomet)
Length = 143
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 23 EWSTVPYSAPQAPGPNGKQRTSSLESPI----MLLTGHQSAVYTMKFNPAGTVIASGSHD 78
++S V Y++ P K S L + + LTGH ++ + + AG + ASG+
Sbjct: 24 QYSVVFYTSILEKAPAAKDLFSFLANGVDPTNPKLTGHAEKLFALVRDSAGQLKASGTVV 83
Query: 79 RDIFLWHVHGDCK----NFMV-----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129
D L VH F+V LK K A+ D W+ D+ RAW+V
Sbjct: 84 ADAALGSVHAQKAVTDPQFVVVKEALLKTIKAAVGD-KWS-----------DELSRAWEV 131
Query: 130 ---ETGKQIKK 137
E IKK
Sbjct: 132 AYDELAAAIKK 142
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 132 GKQIKKMAEHNSFVNSCCPSRRGP---PLVVSGSDDGTAKLWDMRQ 174
GK I + E+ NS S P P +++GSD G K+W++++
Sbjct: 52 GKLIATLMENEP--NSITSSAVSPGETPYLITGSDQGVIKIWNLKE 95
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 275 FEKNLLKCG----WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330
+E+ +LK WSPDG+ R+ Y SR + +LP +TGS+ +V
Sbjct: 167 YEEEILKTHIAHWWSPDGT--------RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218
Query: 331 PVIGS 335
P GS
Sbjct: 219 PKAGS 223
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---CKNFMVLKGHKNA-ILDL 106
+L+ H + + ++ N ++A+ S D I D + F +G A ++D+
Sbjct: 189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR--RGLDRADVVDM 246
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMA 139
W+TDGS++ S TL +++ + K+ A
Sbjct: 247 KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA 279
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 27/142 (19%)
Query: 28 PYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH 87
P+ A GP + T ++E M++ + + M FN GS + H
Sbjct: 21 PHEQATASGPKVTEFTMTIEEKKMVIDDSGTTLQAMTFN--------GSMPGPTLVVH-E 71
Query: 88 GDCKNFMVLKGHKNAI---LDLHWTT---DGSQIISASPDK--TLRAWDVETGKQIKKMA 139
GD ++ NA+ +D H T G+++ + +P + TLR K
Sbjct: 72 GDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRF----------KAD 121
Query: 140 EHNSFVNSCCPSRRGPPLVVSG 161
+FV C PS P VVSG
Sbjct: 122 RSGTFVYHCAPSGMVPWHVVSG 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,317,494
Number of Sequences: 62578
Number of extensions: 469503
Number of successful extensions: 2634
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 506
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)