Query 019006
Match_columns 347
No_of_seqs 343 out of 2264
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0265 U5 snRNP-specific prot 100.0 2.4E-61 5.2E-66 381.6 31.4 310 38-347 28-337 (338)
2 KOG0271 Notchless-like WD40 re 100.0 8.1E-51 1.8E-55 331.5 26.9 288 51-347 109-438 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-50 3.1E-55 330.1 26.3 292 45-346 145-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-50 4.9E-55 332.6 24.6 282 55-346 173-458 (459)
5 KOG0286 G-protein beta subunit 100.0 1.5E-46 3.2E-51 296.7 33.3 290 48-346 46-343 (343)
6 KOG0279 G protein beta subunit 100.0 4.2E-43 9.1E-48 275.5 31.1 286 51-347 9-312 (315)
7 KOG0282 mRNA splicing factor [ 100.0 8.6E-44 1.9E-48 298.4 22.0 295 48-346 205-503 (503)
8 KOG0284 Polyadenylation factor 100.0 1.2E-43 2.6E-48 291.8 18.4 279 57-346 96-378 (464)
9 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-43 1.5E-47 288.5 20.6 241 98-346 173-416 (459)
10 KOG0295 WD40 repeat-containing 100.0 4.1E-42 8.8E-47 279.0 23.7 288 50-347 101-405 (406)
11 KOG0293 WD40 repeat-containing 100.0 3E-41 6.5E-46 278.1 24.6 288 51-347 218-512 (519)
12 KOG0266 WD40 repeat-containing 100.0 4.3E-40 9.4E-45 297.0 33.7 292 50-347 151-453 (456)
13 KOG0273 Beta-transducin family 100.0 2.9E-40 6.2E-45 276.5 29.6 277 58-347 236-522 (524)
14 KOG0296 Angio-associated migra 100.0 1.4E-39 3E-44 264.5 30.3 289 47-347 54-397 (399)
15 KOG0315 G-protein beta subunit 100.0 2.1E-39 4.6E-44 250.9 29.6 271 70-347 11-287 (311)
16 cd00200 WD40 WD40 domain, foun 100.0 1.1E-38 2.3E-43 272.3 37.0 286 51-346 3-289 (289)
17 KOG0273 Beta-transducin family 100.0 1E-39 2.2E-44 273.2 28.8 284 53-347 174-481 (524)
18 KOG0645 WD40 repeat protein [G 100.0 1E-38 2.2E-43 249.9 32.0 283 50-347 7-310 (312)
19 KOG0285 Pleiotropic regulator 100.0 1.5E-39 3.3E-44 263.6 26.6 287 48-346 142-437 (460)
20 KOG0315 G-protein beta subunit 100.0 1E-38 2.3E-43 247.0 29.7 266 52-327 35-309 (311)
21 PLN00181 protein SPA1-RELATED; 100.0 2.6E-38 5.7E-43 305.2 39.6 289 53-347 479-792 (793)
22 KOG0279 G protein beta subunit 100.0 1.2E-38 2.7E-43 250.4 28.1 251 48-306 54-313 (315)
23 KOG0316 Conserved WD40 repeat- 100.0 1.7E-38 3.7E-43 244.0 27.0 279 50-340 10-292 (307)
24 KOG0319 WD40-repeat-containing 100.0 2E-38 4.3E-43 278.5 27.2 285 52-346 318-617 (775)
25 KOG0318 WD40 repeat stress pro 100.0 6.2E-37 1.3E-41 259.7 32.9 286 52-347 185-559 (603)
26 KOG1407 WD40 repeat protein [F 100.0 1.8E-37 4E-42 241.7 27.1 285 51-346 14-309 (313)
27 KOG0291 WD40-repeat-containing 100.0 5.2E-37 1.1E-41 270.2 32.6 287 51-347 301-611 (893)
28 KOG0263 Transcription initiati 100.0 1.3E-38 2.9E-43 282.0 22.5 270 57-347 378-648 (707)
29 KOG0318 WD40 repeat stress pro 100.0 4.2E-36 9E-41 254.7 34.2 291 50-347 52-349 (603)
30 KOG0643 Translation initiation 100.0 5.6E-37 1.2E-41 239.7 24.6 284 51-345 4-314 (327)
31 KOG0288 WD40 repeat protein Ti 100.0 3.5E-38 7.5E-43 260.0 18.5 288 51-346 169-459 (459)
32 KOG0286 G-protein beta subunit 100.0 9E-36 2E-40 235.8 29.6 244 93-346 48-301 (343)
33 KOG0306 WD40-repeat-containing 100.0 5.7E-36 1.2E-40 263.5 29.5 319 7-346 331-662 (888)
34 KOG0284 Polyadenylation factor 100.0 1.8E-37 3.8E-42 255.5 16.1 244 52-305 133-379 (464)
35 KOG0291 WD40-repeat-containing 100.0 2.3E-34 5E-39 253.6 33.4 291 50-347 182-507 (893)
36 KOG0263 Transcription initiati 100.0 1E-35 2.3E-40 263.7 24.5 206 50-257 444-650 (707)
37 KOG0319 WD40-repeat-containing 100.0 3.3E-35 7.1E-40 258.3 27.0 293 52-347 99-534 (775)
38 KOG0295 WD40 repeat-containing 100.0 1.1E-35 2.4E-40 241.7 21.7 245 52-305 145-405 (406)
39 KOG0285 Pleiotropic regulator 100.0 3.7E-35 8E-40 238.3 22.4 246 90-346 141-387 (460)
40 KOG0306 WD40-repeat-containing 100.0 3.8E-34 8.2E-39 252.1 30.5 306 37-347 85-579 (888)
41 KOG0281 Beta-TrCP (transducin 100.0 4.5E-36 9.8E-41 242.9 15.9 268 56-347 196-476 (499)
42 KOG0278 Serine/threonine kinas 100.0 2.7E-35 5.9E-40 228.3 18.3 282 52-347 9-296 (334)
43 KOG0276 Vesicle coat complex C 100.0 2.7E-34 5.9E-39 248.3 26.4 283 52-344 8-295 (794)
44 KOG0772 Uncharacterized conser 100.0 1.7E-34 3.7E-39 244.5 24.1 290 51-345 161-484 (641)
45 KOG0283 WD40 repeat-containing 100.0 1.1E-34 2.5E-39 259.1 23.9 247 53-307 262-577 (712)
46 KOG0275 Conserved WD40 repeat- 100.0 6.7E-35 1.4E-39 234.3 19.1 285 55-346 211-507 (508)
47 KOG0313 Microtubule binding pr 100.0 1.6E-33 3.4E-38 230.3 26.6 279 55-346 103-416 (423)
48 KOG0276 Vesicle coat complex C 100.0 3.5E-34 7.6E-39 247.7 22.9 242 96-346 9-255 (794)
49 KOG0277 Peroxisomal targeting 100.0 1.1E-33 2.5E-38 219.8 23.1 278 61-346 12-307 (311)
50 KOG1446 Histone H3 (Lys4) meth 100.0 6.6E-32 1.4E-36 216.4 33.7 288 51-346 8-303 (311)
51 KOG0266 WD40 repeat-containing 100.0 3.1E-33 6.7E-38 252.5 29.5 244 99-347 158-408 (456)
52 KOG0292 Vesicle coat complex C 100.0 1.5E-33 3.2E-38 252.4 25.8 285 53-346 5-319 (1202)
53 KOG0316 Conserved WD40 repeat- 100.0 1.4E-33 3.1E-38 217.0 22.0 243 92-347 9-256 (307)
54 KOG0274 Cdc4 and related F-box 100.0 6.1E-33 1.3E-37 250.3 29.3 277 52-347 202-481 (537)
55 KOG0282 mRNA splicing factor [ 100.0 3E-34 6.4E-39 241.3 15.7 249 91-347 205-461 (503)
56 PTZ00421 coronin; Provisional 100.0 1.6E-31 3.4E-36 240.7 33.7 269 56-330 19-315 (493)
57 KOG0647 mRNA export protein (c 100.0 2.4E-32 5.2E-37 217.3 24.9 278 55-337 25-312 (347)
58 cd00200 WD40 WD40 domain, foun 100.0 2.2E-31 4.9E-36 226.9 31.3 244 95-347 4-248 (289)
59 KOG0645 WD40 repeat protein [G 100.0 1E-31 2.2E-36 210.8 25.9 245 54-306 58-311 (312)
60 KOG0283 WD40 repeat-containing 100.0 1.2E-32 2.6E-37 246.2 23.1 249 96-347 262-575 (712)
61 KOG1407 WD40 repeat protein [F 100.0 2.7E-32 5.8E-37 212.9 22.0 243 95-346 15-259 (313)
62 KOG0289 mRNA splicing factor [ 100.0 1.3E-31 2.9E-36 222.5 26.2 280 58-346 220-504 (506)
63 KOG0268 Sof1-like rRNA process 100.0 4.5E-33 9.7E-38 226.5 17.0 278 51-346 60-343 (433)
64 PTZ00420 coronin; Provisional 100.0 1.6E-30 3.5E-35 235.4 34.4 251 74-331 49-319 (568)
65 KOG0277 Peroxisomal targeting 100.0 1.5E-32 3.2E-37 213.6 18.2 243 56-305 59-308 (311)
66 KOG0305 Anaphase promoting com 100.0 3.1E-31 6.7E-36 231.2 28.6 272 61-347 181-460 (484)
67 KOG0265 U5 snRNP-specific prot 100.0 1.1E-31 2.3E-36 213.5 22.8 245 92-346 39-294 (338)
68 KOG0292 Vesicle coat complex C 100.0 2.7E-32 5.9E-37 244.4 21.5 246 97-347 6-279 (1202)
69 PLN00181 protein SPA1-RELATED; 100.0 1.1E-30 2.3E-35 252.5 33.5 258 78-346 457-736 (793)
70 KOG0313 Microtubule binding pr 100.0 6.2E-31 1.3E-35 215.2 23.8 248 49-306 136-418 (423)
71 KOG1036 Mitotic spindle checkp 100.0 2E-30 4.3E-35 207.1 26.1 276 56-338 12-294 (323)
72 KOG0640 mRNA cleavage stimulat 100.0 1E-30 2.2E-35 209.0 23.7 292 50-346 105-424 (430)
73 KOG0308 Conserved WD40 repeat- 100.0 1.1E-31 2.4E-36 233.2 19.7 283 56-346 20-325 (735)
74 KOG0641 WD40 repeat protein [G 100.0 1.1E-28 2.5E-33 189.1 31.3 286 52-347 28-348 (350)
75 KOG0281 Beta-TrCP (transducin 100.0 3.9E-32 8.4E-37 220.1 12.8 227 100-347 197-427 (499)
76 KOG0310 Conserved WD40 repeat- 100.0 2.1E-30 4.6E-35 218.4 21.8 242 53-305 64-308 (487)
77 KOG0299 U3 snoRNP-associated p 100.0 1.7E-29 3.8E-34 211.5 26.9 282 50-339 135-447 (479)
78 KOG0310 Conserved WD40 repeat- 100.0 1.5E-29 3.3E-34 213.3 26.2 276 57-344 26-305 (487)
79 KOG0296 Angio-associated migra 100.0 3.2E-29 6.9E-34 204.3 26.7 246 49-306 98-398 (399)
80 KOG2096 WD40 repeat protein [G 100.0 2.2E-29 4.9E-34 201.9 24.9 286 51-339 80-394 (420)
81 KOG0973 Histone transcription 100.0 3.7E-29 8.1E-34 229.4 28.9 285 54-347 9-354 (942)
82 KOG1446 Histone H3 (Lys4) meth 100.0 2.3E-28 4.9E-33 196.2 29.4 246 96-347 10-261 (311)
83 KOG0641 WD40 repeat protein [G 100.0 2.2E-28 4.9E-33 187.5 27.8 247 53-305 85-348 (350)
84 KOG1332 Vesicle coat complex C 100.0 5.7E-30 1.2E-34 198.2 19.1 248 53-305 7-285 (299)
85 KOG0300 WD40 repeat-containing 100.0 1.1E-29 2.3E-34 203.8 21.1 285 51-347 142-475 (481)
86 KOG1273 WD40 repeat protein [G 100.0 4.7E-29 1E-33 199.8 24.5 283 60-346 26-320 (405)
87 KOG0973 Histone transcription 100.0 5.1E-29 1.1E-33 228.5 25.3 256 46-309 58-358 (942)
88 KOG0288 WD40 repeat protein Ti 100.0 9.2E-30 2E-34 210.4 18.3 243 50-303 212-458 (459)
89 KOG0274 Cdc4 and related F-box 100.0 1.4E-28 3.1E-33 222.0 27.4 256 53-326 245-503 (537)
90 KOG0294 WD40 repeat-containing 100.0 3.1E-28 6.8E-33 195.0 25.7 246 48-308 34-283 (362)
91 KOG0264 Nucleosome remodeling 100.0 2.5E-28 5.4E-33 204.4 26.2 259 53-347 120-403 (422)
92 KOG0301 Phospholipase A2-activ 100.0 2.6E-28 5.6E-33 213.8 27.4 277 49-346 6-286 (745)
93 KOG0293 WD40 repeat-containing 100.0 3E-29 6.6E-34 207.4 20.2 244 92-346 216-468 (519)
94 PTZ00421 coronin; Provisional 100.0 1.6E-27 3.4E-32 214.9 31.5 238 103-347 23-289 (493)
95 PTZ00420 coronin; Provisional 100.0 2.3E-27 5E-32 215.0 32.4 225 118-347 50-292 (568)
96 KOG0278 Serine/threonine kinas 100.0 1.2E-29 2.6E-34 197.1 14.1 250 48-310 50-301 (334)
97 KOG4283 Transcription-coupled 100.0 8.5E-28 1.8E-32 191.0 24.8 290 52-345 38-362 (397)
98 KOG0294 WD40 repeat-containing 100.0 1.2E-27 2.6E-32 191.7 25.2 262 72-347 4-280 (362)
99 KOG0643 Translation initiation 100.0 2.8E-27 6.1E-32 185.6 24.6 236 94-338 4-251 (327)
100 KOG0640 mRNA cleavage stimulat 100.0 1.1E-27 2.4E-32 191.7 20.6 246 94-346 106-381 (430)
101 KOG0268 Sof1-like rRNA process 100.0 8.1E-29 1.8E-33 201.8 14.2 237 95-346 61-300 (433)
102 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-25 2.8E-30 193.9 34.8 270 69-347 1-278 (300)
103 KOG0321 WD40 repeat-containing 100.0 2E-27 4.4E-32 206.4 22.9 283 61-347 53-390 (720)
104 KOG0269 WD40 repeat-containing 100.0 8.3E-28 1.8E-32 213.0 20.1 278 59-344 41-336 (839)
105 KOG1539 WD repeat protein [Gen 100.0 7.7E-27 1.7E-31 208.4 26.2 290 49-347 236-605 (910)
106 KOG1408 WD40 repeat protein [F 100.0 4.3E-27 9.2E-32 207.0 23.4 288 55-347 367-712 (1080)
107 KOG0275 Conserved WD40 repeat- 100.0 1.2E-27 2.5E-32 192.7 17.7 241 98-346 211-465 (508)
108 KOG0650 WD40 repeat nucleolar 100.0 1.2E-26 2.6E-31 200.4 25.0 285 51-346 394-733 (733)
109 KOG0639 Transducin-like enhanc 100.0 5.2E-27 1.1E-31 198.8 20.4 279 55-346 417-702 (705)
110 KOG4328 WD40 protein [Function 100.0 3.2E-26 6.9E-31 191.9 24.9 293 52-346 181-493 (498)
111 KOG2055 WD40 repeat protein [G 100.0 3.3E-26 7.3E-31 192.0 24.9 285 57-347 213-511 (514)
112 KOG0289 mRNA splicing factor [ 100.0 2.9E-26 6.3E-31 190.9 24.1 248 50-305 254-505 (506)
113 KOG0647 mRNA export protein (c 100.0 2.6E-26 5.7E-31 183.0 22.1 240 97-346 24-279 (347)
114 KOG2445 Nuclear pore complex c 100.0 8.2E-26 1.8E-30 180.7 24.8 263 53-346 9-316 (361)
115 KOG0308 Conserved WD40 repeat- 100.0 6.3E-27 1.4E-31 203.8 19.4 234 105-347 29-284 (735)
116 KOG1036 Mitotic spindle checkp 100.0 7.1E-26 1.5E-30 181.2 23.9 237 99-347 12-261 (323)
117 KOG1274 WD40 repeat protein [G 100.0 9.2E-26 2E-30 203.7 26.2 248 97-347 10-261 (933)
118 KOG1332 Vesicle coat complex C 100.0 1.2E-26 2.5E-31 179.9 17.7 245 96-346 7-284 (299)
119 KOG0305 Anaphase promoting com 100.0 1.2E-25 2.7E-30 196.3 26.0 241 55-308 215-463 (484)
120 KOG0300 WD40 repeat-containing 99.9 5.1E-26 1.1E-30 182.8 20.0 251 50-307 183-477 (481)
121 KOG1063 RNA polymerase II elon 99.9 1E-25 2.2E-30 197.7 23.4 290 52-346 262-697 (764)
122 KOG0299 U3 snoRNP-associated p 99.9 1.2E-25 2.7E-30 188.5 22.2 234 54-295 199-444 (479)
123 KOG0301 Phospholipase A2-activ 99.9 9.1E-26 2E-30 198.0 22.0 238 93-347 7-248 (745)
124 KOG1274 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 196.3 28.7 272 54-338 10-290 (933)
125 KOG0267 Microtubule severing p 99.9 6.5E-27 1.4E-31 206.0 11.9 255 69-339 4-259 (825)
126 KOG2048 WD40 repeat protein [G 99.9 1.4E-23 2.9E-28 184.0 30.9 280 52-344 20-315 (691)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.7E-23 1.2E-27 177.3 33.6 264 50-328 24-300 (300)
128 KOG0302 Ribosome Assembly prot 99.9 9.8E-25 2.1E-29 179.0 21.0 257 53-341 147-432 (440)
129 KOG0270 WD40 repeat-containing 99.9 5.4E-25 1.2E-29 183.9 19.6 237 69-311 192-454 (463)
130 KOG2106 Uncharacterized conser 99.9 8.3E-24 1.8E-28 179.6 26.8 286 55-347 285-625 (626)
131 KOG1063 RNA polymerase II elon 99.9 3.2E-24 6.8E-29 188.3 25.0 291 48-347 182-647 (764)
132 KOG2919 Guanine nucleotide-bin 99.9 8.3E-24 1.8E-28 170.4 24.9 275 59-339 51-361 (406)
133 KOG0264 Nucleosome remodeling 99.9 9.2E-25 2E-29 183.1 20.1 209 48-256 168-404 (422)
134 KOG0646 WD40 repeat protein [G 99.9 8.3E-25 1.8E-29 183.9 19.2 242 57-331 81-332 (476)
135 KOG0267 Microtubule severing p 99.9 3.2E-26 7E-31 201.6 11.2 237 52-298 23-260 (825)
136 KOG4283 Transcription-coupled 99.9 4.9E-24 1.1E-28 169.7 22.1 211 96-309 39-279 (397)
137 KOG1034 Transcriptional repres 99.9 4.4E-24 9.5E-29 172.3 21.6 293 51-346 32-381 (385)
138 KOG0646 WD40 repeat protein [G 99.9 1.1E-23 2.5E-28 177.1 24.6 262 74-347 12-306 (476)
139 KOG0322 G-protein beta subunit 99.9 1.3E-24 2.8E-29 170.4 17.7 290 48-347 5-322 (323)
140 KOG2106 Uncharacterized conser 99.9 8E-23 1.7E-27 173.6 29.5 274 53-346 241-519 (626)
141 KOG0639 Transducin-like enhanc 99.9 1.1E-24 2.5E-29 184.7 16.9 238 57-305 465-703 (705)
142 KOG0269 WD40 repeat-containing 99.9 6.1E-25 1.3E-29 195.0 15.6 237 60-304 90-338 (839)
143 KOG0772 Uncharacterized conser 99.9 4.7E-24 1E-28 181.5 19.8 241 94-338 161-429 (641)
144 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.7E-26 175.5 32.9 291 53-347 110-522 (910)
145 KOG1408 WD40 repeat protein [F 99.9 2.8E-23 6.1E-28 183.1 20.7 244 54-307 456-714 (1080)
146 KOG0307 Vesicle coat complex C 99.9 3.4E-24 7.4E-29 198.0 15.6 277 62-346 11-325 (1049)
147 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-22 2.7E-27 172.2 20.3 260 59-330 36-305 (673)
148 KOG1334 WD40 repeat protein [G 99.9 2.1E-23 4.5E-28 176.5 15.5 294 51-346 136-464 (559)
149 KOG1538 Uncharacterized conser 99.9 7.6E-22 1.7E-26 173.0 22.7 271 59-347 14-292 (1081)
150 KOG4328 WD40 protein [Function 99.9 6.3E-22 1.4E-26 166.3 21.2 247 95-346 181-448 (498)
151 KOG2096 WD40 repeat protein [G 99.9 4.4E-22 9.6E-27 160.3 19.4 210 95-347 81-307 (420)
152 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-19 4E-24 162.1 38.8 286 52-347 60-358 (466)
153 KOG0270 WD40 repeat-containing 99.9 2.1E-21 4.5E-26 162.7 23.6 273 62-347 130-448 (463)
154 KOG4227 WD40 repeat protein [G 99.9 5.1E-21 1.1E-25 158.2 24.0 288 53-346 52-385 (609)
155 KOG2055 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 165.9 19.4 231 100-338 213-455 (514)
156 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.5E-26 169.8 20.6 242 94-345 394-677 (733)
157 KOG2048 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 166.0 26.4 243 100-345 25-272 (691)
158 KOG0307 Vesicle coat complex C 99.9 6.1E-22 1.3E-26 183.2 16.3 244 58-309 65-330 (1049)
159 KOG0321 WD40 repeat-containing 99.9 6E-21 1.3E-25 166.5 20.7 271 51-329 94-428 (720)
160 KOG0302 Ribosome Assembly prot 99.9 5.9E-21 1.3E-25 156.9 19.0 206 97-307 148-379 (440)
161 COG2319 FOG: WD40 repeat [Gene 99.9 3E-18 6.5E-23 154.2 38.8 287 48-347 146-441 (466)
162 KOG0642 Cell-cycle nuclear pro 99.9 2.9E-21 6.3E-26 166.3 17.3 263 47-319 284-574 (577)
163 KOG1007 WD repeat protein TSSC 99.9 2.6E-20 5.6E-25 148.2 20.2 273 52-346 58-359 (370)
164 PRK11028 6-phosphogluconolacto 99.9 1E-18 2.2E-23 152.9 32.0 273 72-347 5-303 (330)
165 KOG1445 Tumor-specific antigen 99.9 1.8E-20 3.9E-25 163.7 19.8 123 50-173 72-200 (1012)
166 KOG1517 Guanine nucleotide bin 99.9 1.9E-19 4.1E-24 165.4 24.2 285 55-346 1062-1379(1387)
167 KOG1009 Chromatin assembly com 99.9 1.8E-19 4E-24 149.5 21.9 275 58-341 14-365 (434)
168 KOG1188 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 147.7 19.2 276 70-346 41-344 (376)
169 KOG0649 WD40 repeat protein [G 99.9 3.1E-19 6.6E-24 138.9 20.7 246 58-345 11-271 (325)
170 KOG4378 Nuclear protein COP1 [ 99.8 6.4E-20 1.4E-24 155.9 17.5 219 61-288 83-305 (673)
171 KOG0303 Actin-binding protein 99.8 1.8E-19 3.9E-24 149.1 19.7 209 94-309 75-297 (472)
172 KOG1009 Chromatin assembly com 99.8 6.7E-19 1.4E-23 146.2 19.7 251 51-310 59-376 (434)
173 KOG1273 WD40 repeat protein [G 99.8 8.6E-19 1.9E-23 141.2 19.6 235 103-346 26-278 (405)
174 KOG2919 Guanine nucleotide-bin 99.8 1.8E-18 4E-23 139.8 21.3 236 103-347 52-326 (406)
175 KOG2445 Nuclear pore complex c 99.8 2.3E-18 5E-23 138.3 21.4 219 96-347 9-255 (361)
176 KOG2110 Uncharacterized conser 99.8 1.6E-17 3.5E-22 136.6 25.7 232 101-347 6-247 (391)
177 PRK01742 tolB translocation pr 99.8 2.8E-18 6.2E-23 154.8 23.3 234 78-330 183-427 (429)
178 KOG0644 Uncharacterized conser 99.8 6.6E-20 1.4E-24 164.6 12.3 274 52-345 185-465 (1113)
179 KOG1240 Protein kinase contain 99.8 1.3E-17 2.8E-22 155.6 27.1 295 51-346 1042-1431(1431)
180 PRK11028 6-phosphogluconolacto 99.8 8.7E-17 1.9E-21 140.7 31.3 244 57-306 34-304 (330)
181 KOG1587 Cytoplasmic dynein int 99.8 4.1E-18 8.9E-23 153.4 22.7 252 49-307 235-517 (555)
182 KOG0303 Actin-binding protein 99.8 1.9E-18 4E-23 143.2 18.5 203 52-257 76-295 (472)
183 KOG1963 WD40 repeat protein [G 99.8 3.7E-17 7.9E-22 148.1 28.4 287 55-347 203-537 (792)
184 KOG0642 Cell-cycle nuclear pro 99.8 4.3E-19 9.2E-24 153.1 15.2 208 48-256 335-561 (577)
185 KOG0290 Conserved WD40 repeat- 99.8 1.6E-17 3.4E-22 132.6 22.3 278 51-339 39-357 (364)
186 KOG1310 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 150.0 16.7 242 51-312 44-309 (758)
187 KOG0771 Prolactin regulatory e 99.8 1.1E-18 2.4E-23 145.7 15.7 194 61-256 148-354 (398)
188 KOG0771 Prolactin regulatory e 99.8 1.7E-17 3.6E-22 138.8 21.9 158 188-346 148-352 (398)
189 KOG1523 Actin-related protein 99.8 3.9E-17 8.4E-22 132.0 22.9 200 57-257 10-237 (361)
190 KOG1034 Transcriptional repres 99.8 1.1E-17 2.4E-22 135.6 18.2 244 55-306 87-383 (385)
191 KOG1587 Cytoplasmic dynein int 99.8 8.4E-17 1.8E-21 145.1 26.0 261 79-347 222-515 (555)
192 KOG0290 Conserved WD40 repeat- 99.8 3.2E-17 7E-22 130.8 19.8 236 55-297 94-357 (364)
193 KOG1524 WD40 repeat-containing 99.8 9.4E-18 2E-22 144.2 16.5 208 69-303 75-283 (737)
194 KOG1188 WD40 repeat protein [G 99.8 3.8E-17 8.2E-22 133.1 18.5 264 38-305 49-345 (376)
195 KOG2110 Uncharacterized conser 99.8 1.1E-15 2.4E-20 126.0 26.3 235 57-306 5-248 (391)
196 KOG1524 WD40 repeat-containing 99.8 8.1E-17 1.8E-21 138.5 20.5 263 55-344 12-282 (737)
197 KOG4227 WD40 repeat protein [G 99.8 7.1E-17 1.5E-21 133.9 18.8 250 95-347 51-321 (609)
198 KOG2394 WD40 protein DMR-N9 [G 99.8 2.6E-17 5.5E-22 141.5 16.4 196 110-327 183-383 (636)
199 KOG1517 Guanine nucleotide bin 99.8 7.9E-17 1.7E-21 148.5 20.4 250 57-309 1109-1384(1387)
200 KOG1538 Uncharacterized conser 99.8 8.1E-17 1.7E-21 141.9 19.0 241 49-306 45-293 (1081)
201 PRK03629 tolB translocation pr 99.8 2.3E-15 5.1E-20 135.6 28.8 235 80-329 180-428 (429)
202 KOG0644 Uncharacterized conser 99.7 4.9E-18 1.1E-22 152.7 9.6 234 95-347 185-425 (1113)
203 KOG1007 WD repeat protein TSSC 99.7 3.3E-16 7.2E-21 125.0 18.6 200 55-256 121-361 (370)
204 KOG0649 WD40 repeat protein [G 99.7 9E-15 1.9E-19 114.2 24.4 236 49-303 54-313 (325)
205 KOG1963 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 134.4 25.6 274 62-344 21-318 (792)
206 KOG1445 Tumor-specific antigen 99.7 2.7E-16 5.8E-21 137.9 16.3 231 111-347 590-843 (1012)
207 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 137.4 20.9 222 51-287 197-426 (429)
208 KOG1272 WD40-repeat-containing 99.7 7.3E-17 1.6E-21 136.4 11.5 265 57-338 129-399 (545)
209 KOG2111 Uncharacterized conser 99.7 1.8E-14 4E-19 116.7 24.3 234 102-347 7-255 (346)
210 PRK04922 tolB translocation pr 99.7 1.1E-14 2.4E-19 131.8 25.1 235 79-328 184-432 (433)
211 PRK02889 tolB translocation pr 99.7 5.2E-14 1.1E-18 127.0 27.1 235 80-329 177-425 (427)
212 KOG3881 Uncharacterized conser 99.7 1.1E-14 2.3E-19 121.1 20.1 263 56-329 54-342 (412)
213 KOG1240 Protein kinase contain 99.7 2E-14 4.3E-19 134.8 24.0 248 92-347 1040-1333(1431)
214 PRK05137 tolB translocation pr 99.7 1.9E-13 4.1E-18 123.9 29.1 234 80-329 183-433 (435)
215 KOG1354 Serine/threonine prote 99.7 1.9E-14 4.2E-19 117.7 19.8 282 57-345 25-431 (433)
216 KOG4497 Uncharacterized conser 99.7 2.6E-14 5.6E-19 116.4 20.4 279 63-346 14-389 (447)
217 KOG2111 Uncharacterized conser 99.7 4.1E-13 8.9E-18 109.0 27.0 233 60-307 8-257 (346)
218 KOG3881 Uncharacterized conser 99.7 3.7E-14 8E-19 117.9 21.2 238 100-347 55-319 (412)
219 KOG2321 WD40 repeat protein [G 99.7 1.3E-13 2.7E-18 120.1 24.1 272 55-342 49-337 (703)
220 KOG0322 G-protein beta subunit 99.6 8.7E-15 1.9E-19 115.6 15.1 241 52-305 50-322 (323)
221 KOG1523 Actin-related protein 99.6 1.6E-13 3.4E-18 111.4 20.8 226 100-330 10-261 (361)
222 PF10282 Lactonase: Lactonase, 99.6 2.4E-11 5.1E-16 106.7 35.7 276 72-347 2-321 (345)
223 KOG1310 WD40 repeat protein [G 99.6 1.7E-14 3.8E-19 124.7 14.6 164 94-257 44-232 (758)
224 PF08662 eIF2A: Eukaryotic tra 99.6 2.1E-13 4.5E-18 109.0 19.1 147 188-347 9-178 (194)
225 PF02239 Cytochrom_D1: Cytochr 99.6 3.1E-11 6.7E-16 106.1 33.9 284 51-346 30-345 (369)
226 KOG1334 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 118.7 16.0 253 94-346 136-422 (559)
227 KOG4497 Uncharacterized conser 99.6 3.5E-12 7.6E-17 104.1 24.3 272 58-341 49-425 (447)
228 TIGR02800 propeller_TolB tol-p 99.6 4.1E-12 8.9E-17 115.0 27.8 232 80-326 171-416 (417)
229 PRK03629 tolB translocation pr 99.6 2.2E-12 4.9E-17 116.4 25.2 220 53-286 194-427 (429)
230 KOG1272 WD40-repeat-containing 99.6 3.3E-14 7.2E-19 120.6 11.0 229 102-345 131-359 (545)
231 PRK04922 tolB translocation pr 99.6 2.2E-12 4.8E-17 116.8 23.7 200 52-256 198-411 (433)
232 PRK04792 tolB translocation pr 99.5 9.8E-12 2.1E-16 112.7 27.5 234 80-329 199-447 (448)
233 PF08662 eIF2A: Eukaryotic tra 99.5 1.4E-12 3E-17 104.3 18.7 149 104-256 9-179 (194)
234 KOG0974 WD-repeat protein WDR6 99.5 5E-13 1.1E-17 123.8 18.0 182 156-347 100-287 (967)
235 KOG2139 WD40 repeat protein [G 99.5 3.6E-12 7.8E-17 105.3 20.7 194 57-255 98-308 (445)
236 PF10282 Lactonase: Lactonase, 99.5 2.9E-10 6.2E-15 99.9 34.2 251 58-312 37-330 (345)
237 PRK05137 tolB translocation pr 99.5 6.8E-12 1.5E-16 113.8 24.4 201 51-256 195-412 (435)
238 PRK00178 tolB translocation pr 99.5 2.6E-11 5.5E-16 110.1 28.0 234 81-329 181-428 (430)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 6.3E-13 1.4E-17 114.9 16.3 174 68-257 184-363 (636)
240 PRK02889 tolB translocation pr 99.5 5.9E-12 1.3E-16 113.7 23.0 208 122-340 176-392 (427)
241 KOG2139 WD40 repeat protein [G 99.5 2.3E-11 5.1E-16 100.6 23.8 240 55-305 138-430 (445)
242 PF02239 Cytochrom_D1: Cytochr 99.5 6E-11 1.3E-15 104.2 28.1 269 72-347 9-301 (369)
243 KOG1409 Uncharacterized conser 99.5 3.4E-12 7.3E-17 104.8 18.2 246 50-305 17-269 (404)
244 KOG2321 WD40 repeat protein [G 99.5 7E-12 1.5E-16 109.4 20.4 243 98-346 49-300 (703)
245 KOG4547 WD40 repeat-containing 99.5 3.9E-12 8.4E-17 111.3 17.8 208 110-346 3-218 (541)
246 KOG1354 Serine/threonine prote 99.4 4.3E-11 9.3E-16 98.4 20.2 245 100-346 25-357 (433)
247 KOG2315 Predicted translation 99.4 3.1E-10 6.8E-15 99.0 26.0 269 59-347 36-389 (566)
248 KOG0974 WD-repeat protein WDR6 99.4 1.3E-11 2.9E-16 114.5 18.1 195 103-307 90-289 (967)
249 KOG0280 Uncharacterized conser 99.4 4E-11 8.8E-16 96.5 17.9 244 57-306 69-333 (339)
250 COG2706 3-carboxymuconate cycl 99.4 3.3E-09 7.2E-14 88.3 29.4 269 78-346 15-319 (346)
251 KOG2041 WD40 repeat protein [G 99.4 1.4E-10 3E-15 104.0 22.3 279 57-347 14-336 (1189)
252 KOG1064 RAVE (regulator of V-A 99.4 7E-12 1.5E-16 122.0 14.7 192 52-258 2203-2400(2439)
253 KOG0309 Conserved WD40 repeat- 99.4 8.4E-12 1.8E-16 111.9 14.0 283 57-347 24-338 (1081)
254 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.7E-08 3.6E-13 87.1 33.7 262 79-347 27-329 (352)
255 TIGR02800 propeller_TolB tol-p 99.4 2.5E-10 5.4E-15 103.4 23.3 192 52-248 184-386 (417)
256 PRK00178 tolB translocation pr 99.4 6.6E-10 1.4E-14 100.9 25.4 200 52-256 193-406 (430)
257 KOG4532 WD40-like repeat conta 99.4 1E-09 2.2E-14 87.6 22.8 220 112-337 84-321 (344)
258 KOG4190 Uncharacterized conser 99.4 4.3E-12 9.3E-17 110.5 10.3 280 51-344 729-1032(1034)
259 KOG2314 Translation initiation 99.3 4.3E-10 9.4E-15 98.1 21.2 266 61-339 214-558 (698)
260 PRK04792 tolB translocation pr 99.3 1E-09 2.2E-14 99.6 23.9 196 55-255 215-424 (448)
261 PRK01029 tolB translocation pr 99.3 3.5E-09 7.7E-14 95.4 27.1 238 80-330 166-426 (428)
262 KOG2315 Predicted translation 99.3 1E-09 2.2E-14 96.0 21.7 249 61-329 129-411 (566)
263 TIGR03300 assembly_YfgL outer 99.3 4.1E-09 8.8E-14 94.1 26.7 259 68-345 104-376 (377)
264 COG2706 3-carboxymuconate cycl 99.3 1.2E-07 2.5E-12 79.3 32.0 269 55-327 37-345 (346)
265 PF04762 IKI3: IKI3 family; I 99.3 1.1E-08 2.5E-13 99.6 29.5 272 56-345 74-376 (928)
266 KOG0280 Uncharacterized conser 99.3 4.4E-10 9.5E-15 90.7 15.9 192 61-253 125-330 (339)
267 PLN02919 haloacid dehalogenase 99.3 2.5E-08 5.3E-13 99.0 31.8 242 61-310 571-892 (1057)
268 KOG4547 WD40 repeat-containing 99.3 3.2E-09 7E-14 93.4 22.1 188 67-257 3-221 (541)
269 PRK01029 tolB translocation pr 99.3 7E-09 1.5E-13 93.5 25.1 199 56-257 183-404 (428)
270 KOG1064 RAVE (regulator of V-A 99.2 1.2E-10 2.7E-15 113.7 12.7 183 144-347 2210-2397(2439)
271 COG5170 CDC55 Serine/threonine 99.2 6E-10 1.3E-14 90.7 14.5 243 57-305 26-366 (460)
272 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.6E-13 89.5 25.8 257 68-346 64-336 (377)
273 PLN02919 haloacid dehalogenase 99.2 4.4E-08 9.6E-13 97.3 30.1 238 105-347 572-887 (1057)
274 KOG1409 Uncharacterized conser 99.2 1.8E-09 4E-14 89.0 16.9 245 93-347 17-269 (404)
275 COG5354 Uncharacterized protei 99.2 3.4E-08 7.3E-13 85.7 25.1 275 56-347 70-394 (561)
276 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.3E-07 5E-12 80.1 29.1 235 65-314 53-338 (352)
277 KOG0309 Conserved WD40 repeat- 99.2 3.8E-10 8.2E-15 101.6 12.0 206 51-256 108-339 (1081)
278 KOG4532 WD40-like repeat conta 99.1 3.1E-08 6.7E-13 79.3 20.0 246 61-309 71-334 (344)
279 KOG2041 WD40 repeat protein [G 99.1 7.4E-09 1.6E-13 93.2 17.0 236 101-340 15-280 (1189)
280 PF04762 IKI3: IKI3 family; I 99.1 2.1E-07 4.6E-12 90.9 28.5 279 57-339 120-507 (928)
281 PRK04043 tolB translocation pr 99.1 6.7E-07 1.5E-11 80.3 29.1 208 102-324 189-417 (419)
282 KOG1912 WD40 repeat protein [G 99.1 8.8E-08 1.9E-12 87.3 22.9 206 50-256 48-304 (1062)
283 PF08450 SGL: SMP-30/Gluconola 99.1 1E-06 2.2E-11 73.8 28.4 223 105-336 4-244 (246)
284 COG5354 Uncharacterized protei 99.1 1E-07 2.3E-12 82.7 22.3 254 62-340 136-421 (561)
285 KOG2695 WD40 repeat protein [G 99.1 7.7E-10 1.7E-14 91.2 8.9 164 159-327 228-401 (425)
286 COG5170 CDC55 Serine/threonine 99.1 2.4E-08 5.3E-13 81.5 17.2 240 100-341 26-360 (460)
287 PF15492 Nbas_N: Neuroblastoma 99.0 5.2E-07 1.1E-11 73.3 22.6 233 63-315 3-268 (282)
288 COG4946 Uncharacterized protei 99.0 6.9E-07 1.5E-11 77.2 23.0 172 111-295 331-507 (668)
289 PF13360 PQQ_2: PQQ-like domai 99.0 2.2E-06 4.7E-11 71.3 26.2 186 111-313 35-237 (238)
290 KOG0882 Cyclophilin-related pe 99.0 3.7E-08 8.1E-13 84.2 14.9 255 55-313 7-312 (558)
291 KOG1832 HIV-1 Vpr-binding prot 98.9 9.7E-10 2.1E-14 101.0 5.7 219 92-334 1093-1317(1516)
292 PF13360 PQQ_2: PQQ-like domai 98.9 5.2E-07 1.1E-11 75.1 21.4 217 121-347 2-229 (238)
293 KOG3914 WD repeat protein WDR4 98.9 3.4E-08 7.5E-13 83.2 13.3 152 154-314 73-231 (390)
294 PF00400 WD40: WD domain, G-be 98.9 3.9E-09 8.4E-14 60.7 5.4 39 308-346 1-39 (39)
295 KOG4714 Nucleoporin [Nuclear s 98.9 4.6E-08 1E-12 78.0 12.7 193 60-256 39-254 (319)
296 KOG2695 WD40 repeat protein [G 98.9 1.5E-08 3.2E-13 83.9 10.2 148 106-257 217-377 (425)
297 PRK11138 outer membrane biogen 98.9 3.9E-06 8.5E-11 75.4 26.4 258 69-346 120-392 (394)
298 KOG1912 WD40 repeat protein [G 98.9 7.8E-07 1.7E-11 81.3 21.2 241 103-345 18-301 (1062)
299 KOG4190 Uncharacterized conser 98.9 1.7E-08 3.6E-13 88.5 10.2 210 94-315 729-957 (1034)
300 KOG3914 WD repeat protein WDR4 98.9 5.7E-08 1.2E-12 81.9 13.0 155 104-260 66-227 (390)
301 KOG4714 Nucleoporin [Nuclear s 98.9 1.1E-07 2.4E-12 75.8 13.9 146 69-215 101-255 (319)
302 PF00400 WD40: WD domain, G-be 98.9 6.3E-09 1.4E-13 59.8 5.1 37 49-85 3-39 (39)
303 PF08450 SGL: SMP-30/Gluconola 98.9 1.4E-05 3.1E-10 66.8 27.5 216 62-294 4-243 (246)
304 PRK04043 tolB translocation pr 98.8 3E-06 6.5E-11 76.2 24.2 190 59-255 189-399 (419)
305 COG4946 Uncharacterized protei 98.8 5.9E-06 1.3E-10 71.7 24.4 146 54-202 356-506 (668)
306 KOG1832 HIV-1 Vpr-binding prot 98.8 5.1E-09 1.1E-13 96.4 6.3 259 49-335 1093-1376(1516)
307 PF07433 DUF1513: Protein of u 98.8 1.9E-05 4E-10 66.3 26.0 231 103-342 7-280 (305)
308 KOG1920 IkappaB kinase complex 98.8 5.1E-06 1.1E-10 79.7 25.3 274 57-345 68-362 (1265)
309 PF15492 Nbas_N: Neuroblastoma 98.7 1E-05 2.3E-10 65.9 21.4 190 58-259 44-262 (282)
310 KOG1275 PAB-dependent poly(A) 98.7 4.6E-07 1E-11 84.1 15.0 178 156-346 148-340 (1118)
311 KOG1008 Uncharacterized conser 98.7 1.3E-08 2.8E-13 90.7 4.6 268 58-332 57-357 (783)
312 KOG0882 Cyclophilin-related pe 98.7 3.4E-07 7.4E-12 78.5 11.5 213 99-314 8-239 (558)
313 PRK11138 outer membrane biogen 98.6 3.6E-05 7.9E-10 69.2 24.9 258 69-346 69-351 (394)
314 KOG1645 RING-finger-containing 98.6 4.3E-06 9.3E-11 70.9 16.0 235 95-344 188-457 (463)
315 KOG2114 Vacuolar assembly/sort 98.6 1.4E-05 3E-10 74.2 20.4 206 107-322 30-260 (933)
316 KOG2066 Vacuolar assembly/sort 98.6 5.2E-06 1.1E-10 76.4 17.3 165 156-338 50-225 (846)
317 KOG2314 Translation initiation 98.6 8.6E-06 1.9E-10 71.9 17.7 235 104-345 214-522 (698)
318 KOG1275 PAB-dependent poly(A) 98.5 7.3E-06 1.6E-10 76.4 16.1 182 69-256 147-342 (1118)
319 KOG3617 WD40 and TPR repeat-co 98.5 6.4E-06 1.4E-10 76.3 15.0 267 60-339 62-376 (1416)
320 KOG2066 Vacuolar assembly/sort 98.5 1.3E-05 2.9E-10 73.8 16.8 185 101-306 40-233 (846)
321 KOG2114 Vacuolar assembly/sort 98.5 9E-05 2E-09 69.1 22.0 189 64-257 30-244 (933)
322 PF08553 VID27: VID27 cytoplas 98.4 0.0001 2.2E-09 70.1 21.8 222 112-337 493-761 (794)
323 PF07433 DUF1513: Protein of u 98.3 0.0015 3.3E-08 55.0 28.1 189 62-258 9-249 (305)
324 cd00216 PQQ_DH Dehydrogenases 98.3 0.0011 2.4E-08 61.2 25.7 261 69-346 61-422 (488)
325 PF00780 CNH: CNH domain; Int 98.3 0.0018 3.9E-08 55.1 27.0 229 67-317 5-266 (275)
326 PF11768 DUF3312: Protein of u 98.3 7.7E-06 1.7E-10 73.1 10.5 71 275-347 258-328 (545)
327 KOG1920 IkappaB kinase complex 98.2 0.00026 5.6E-09 68.5 19.9 231 101-346 69-320 (1265)
328 PF11768 DUF3312: Protein of u 98.2 2.1E-05 4.5E-10 70.4 10.9 87 168-256 239-329 (545)
329 PRK02888 nitrous-oxide reducta 98.2 0.0011 2.5E-08 61.1 22.1 107 193-307 285-405 (635)
330 PF08596 Lgl_C: Lethal giant l 98.1 0.0019 4.1E-08 57.5 22.5 234 59-297 3-327 (395)
331 cd00216 PQQ_DH Dehydrogenases 98.1 0.004 8.7E-08 57.6 25.3 238 70-316 111-434 (488)
332 PF04053 Coatomer_WDAD: Coatom 98.1 0.0016 3.4E-08 58.8 21.6 221 100-346 32-260 (443)
333 KOG1008 Uncharacterized conser 98.1 1.9E-06 4.1E-11 77.3 2.5 199 102-306 58-275 (783)
334 PF04053 Coatomer_WDAD: Coatom 98.1 0.002 4.4E-08 58.1 21.7 227 53-309 28-265 (443)
335 KOG3617 WD40 and TPR repeat-co 98.0 8.8E-05 1.9E-09 69.1 12.5 93 163-256 39-131 (1416)
336 COG0823 TolB Periplasmic compo 98.0 0.0011 2.3E-08 59.7 19.3 185 144-337 194-388 (425)
337 PF08553 VID27: VID27 cytoplas 98.0 0.00024 5.2E-09 67.7 15.3 133 203-341 501-641 (794)
338 KOG1645 RING-finger-containing 98.0 7.2E-05 1.6E-09 63.8 10.6 94 124-217 175-269 (463)
339 COG3391 Uncharacterized conser 98.0 0.0096 2.1E-07 53.2 26.8 192 148-344 79-279 (381)
340 PF04841 Vps16_N: Vps16, N-ter 98.0 0.012 2.5E-07 53.1 28.8 166 80-256 62-246 (410)
341 COG3386 Gluconolactonase [Carb 98.0 0.0093 2E-07 51.2 23.5 222 108-339 32-277 (307)
342 KOG2395 Protein involved in va 98.0 0.00024 5.2E-09 63.0 13.1 141 195-339 344-492 (644)
343 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.007 1.5E-07 49.2 22.5 122 112-236 23-145 (354)
344 PF14583 Pectate_lyase22: Olig 97.9 0.011 2.4E-07 51.6 22.7 268 64-343 42-376 (386)
345 COG0823 TolB Periplasmic compo 97.9 0.0044 9.5E-08 55.8 21.1 183 101-296 193-389 (425)
346 smart00320 WD40 WD40 repeats. 97.9 4.7E-05 1E-09 42.4 5.3 38 309-346 3-40 (40)
347 PF03178 CPSF_A: CPSF A subuni 97.9 0.0033 7.2E-08 54.8 19.1 169 165-343 62-260 (321)
348 smart00320 WD40 WD40 repeats. 97.8 5.2E-05 1.1E-09 42.2 4.7 37 49-85 4-40 (40)
349 PRK02888 nitrous-oxide reducta 97.8 0.0036 7.8E-08 57.9 18.5 95 121-215 295-405 (635)
350 COG3391 Uncharacterized conser 97.8 0.023 5E-07 50.8 24.2 196 59-257 75-284 (381)
351 PF04841 Vps16_N: Vps16, N-ter 97.8 0.016 3.5E-07 52.2 22.5 113 184-321 216-329 (410)
352 PF06977 SdiA-regulated: SdiA- 97.7 0.02 4.2E-07 47.5 21.0 198 52-253 16-247 (248)
353 KOG3621 WD40 repeat-containing 97.7 0.00053 1.2E-08 62.8 11.7 139 187-327 36-179 (726)
354 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.041 8.8E-07 48.7 23.6 249 66-334 1-296 (353)
355 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0056 1.2E-07 43.2 12.9 102 60-168 2-109 (111)
356 KOG2444 WD40 repeat protein [G 97.6 0.00016 3.4E-09 57.3 5.7 140 199-347 33-176 (238)
357 KOG4499 Ca2+-binding protein R 97.6 0.029 6.2E-07 45.1 18.6 154 184-338 108-275 (310)
358 PF08596 Lgl_C: Lethal giant l 97.5 0.02 4.3E-07 51.1 19.0 232 102-346 3-288 (395)
359 PF03178 CPSF_A: CPSF A subuni 97.5 0.05 1.1E-06 47.5 21.8 173 122-303 62-262 (321)
360 KOG2395 Protein involved in va 97.5 0.0059 1.3E-07 54.5 14.9 141 111-255 344-499 (644)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.095 2E-06 49.0 29.4 188 69-260 69-337 (527)
362 KOG4640 Anaphase-promoting com 97.4 0.0008 1.7E-08 60.9 8.9 78 58-137 21-99 (665)
363 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.047 1E-06 44.6 24.6 100 112-213 63-164 (354)
364 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.018 3.8E-07 40.8 13.6 100 103-209 2-109 (111)
365 PF06977 SdiA-regulated: SdiA- 97.4 0.054 1.2E-06 44.9 20.6 200 143-345 22-247 (248)
366 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.083 1.8E-06 46.8 25.0 260 57-335 42-344 (353)
367 PF06433 Me-amine-dh_H: Methyl 97.4 0.07 1.5E-06 45.9 26.6 259 80-346 18-318 (342)
368 TIGR03074 PQQ_membr_DH membran 97.4 0.12 2.6E-06 50.3 23.0 112 112-223 194-353 (764)
369 KOG2079 Vacuolar assembly/sort 97.3 0.0042 9.1E-08 59.9 12.7 103 68-172 98-202 (1206)
370 KOG3621 WD40 repeat-containing 97.3 0.0021 4.5E-08 59.1 9.7 114 101-215 34-155 (726)
371 PRK13616 lipoprotein LpqB; Pro 97.1 0.094 2E-06 49.5 19.0 177 144-328 351-550 (591)
372 PF12894 Apc4_WD40: Anaphase-p 97.1 0.002 4.4E-08 38.0 5.2 35 276-311 11-45 (47)
373 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.21 4.6E-06 44.7 19.9 86 62-148 6-114 (415)
374 KOG4640 Anaphase-promoting com 97.1 0.0024 5.2E-08 58.0 7.7 70 277-347 21-91 (665)
375 PF06433 Me-amine-dh_H: Methyl 96.9 0.23 4.9E-06 42.8 24.7 240 63-316 41-330 (342)
376 KOG2444 WD40 repeat protein [G 96.9 0.0047 1E-07 49.2 7.0 102 156-257 71-178 (238)
377 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.45 9.8E-06 44.6 29.3 31 287-317 471-501 (527)
378 PF02897 Peptidase_S9_N: Proly 96.8 0.39 8.5E-06 43.6 27.0 239 59-310 125-408 (414)
379 PRK13616 lipoprotein LpqB; Pro 96.8 0.51 1.1E-05 44.7 21.7 159 58-256 350-525 (591)
380 PF00780 CNH: CNH domain; Int 96.7 0.29 6.4E-06 41.5 20.1 147 155-311 7-170 (275)
381 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0076 1.7E-07 35.5 5.3 34 100-134 11-44 (47)
382 KOG2079 Vacuolar assembly/sort 96.5 0.01 2.3E-07 57.3 8.0 97 157-255 101-202 (1206)
383 TIGR02604 Piru_Ver_Nterm putat 96.4 0.64 1.4E-05 41.4 18.8 151 186-339 15-204 (367)
384 KOG1897 Damage-specific DNA bi 96.3 1.2 2.6E-05 43.6 27.2 272 60-344 586-894 (1096)
385 KOG4441 Proteins containing BT 96.2 0.34 7.3E-06 45.8 16.1 218 112-344 285-537 (571)
386 PF05096 Glu_cyclase_2: Glutam 96.1 0.64 1.4E-05 38.7 20.9 173 156-337 57-249 (264)
387 PF05694 SBP56: 56kDa selenium 96.1 0.92 2E-05 40.5 22.0 191 68-259 86-345 (461)
388 PF12234 Rav1p_C: RAVE protein 96.1 0.32 6.9E-06 45.9 14.8 114 190-306 35-156 (631)
389 PF05096 Glu_cyclase_2: Glutam 95.9 0.85 1.9E-05 38.0 19.6 184 103-295 47-249 (264)
390 PF02897 Peptidase_S9_N: Proly 95.7 1.6 3.4E-05 39.7 26.5 222 103-331 126-383 (414)
391 KOG4499 Ca2+-binding protein R 95.7 0.9 2E-05 36.8 14.7 133 102-236 110-263 (310)
392 COG3204 Uncharacterized protei 95.7 1.1 2.4E-05 37.6 15.3 159 97-256 82-263 (316)
393 PHA02713 hypothetical protein; 95.6 0.45 9.8E-06 44.9 14.0 33 287-319 512-546 (557)
394 PF08728 CRT10: CRT10; InterP 95.5 0.61 1.3E-05 44.5 14.3 119 229-347 103-245 (717)
395 KOG4441 Proteins containing BT 95.5 2.4 5.1E-05 40.3 18.3 182 68-256 284-499 (571)
396 PF15390 DUF4613: Domain of un 95.4 1.1 2.3E-05 41.4 15.0 154 185-346 20-184 (671)
397 KOG3630 Nuclear pore complex, 95.4 0.3 6.5E-06 48.2 12.2 143 102-245 102-262 (1405)
398 PHA02713 hypothetical protein; 95.4 2.6 5.6E-05 39.9 18.4 52 287-340 463-523 (557)
399 COG5167 VID27 Protein involved 95.3 0.55 1.2E-05 42.4 12.4 140 194-339 477-624 (776)
400 PF10647 Gmad1: Lipoprotein Lp 95.2 1.6 3.5E-05 36.6 18.4 147 186-340 25-187 (253)
401 KOG3630 Nuclear pore complex, 95.1 0.33 7.1E-06 48.0 11.4 142 185-335 101-260 (1405)
402 PF14727 PHTB1_N: PTHB1 N-term 95.1 2.4 5.2E-05 38.2 29.5 146 68-213 36-203 (418)
403 COG3823 Glutamine cyclotransfe 95.0 1.4 3.1E-05 35.1 12.8 165 165-336 68-247 (262)
404 COG5167 VID27 Protein involved 95.0 0.59 1.3E-05 42.2 11.8 146 109-256 476-632 (776)
405 PF14870 PSII_BNR: Photosynthe 95.0 2.1 4.6E-05 36.8 25.0 107 225-340 143-254 (302)
406 KOG4460 Nuclear pore complex, 94.9 0.99 2.2E-05 41.0 12.9 102 185-316 104-208 (741)
407 TIGR02604 Piru_Ver_Nterm putat 94.7 2.8 6E-05 37.4 15.9 142 102-247 15-204 (367)
408 PF14583 Pectate_lyase22: Olig 94.5 3.2 6.9E-05 36.7 19.7 224 107-339 42-303 (386)
409 PF10168 Nup88: Nuclear pore c 94.5 1.5 3.2E-05 42.6 14.1 25 184-208 84-108 (717)
410 PF10647 Gmad1: Lipoprotein Lp 94.4 2.6 5.7E-05 35.3 22.1 153 145-298 26-187 (253)
411 KOG2280 Vacuolar assembly/sort 94.4 3.1 6.6E-05 39.7 15.3 162 58-223 84-255 (829)
412 PF10168 Nup88: Nuclear pore c 94.4 5.4 0.00012 38.9 21.5 93 102-216 86-181 (717)
413 PF12234 Rav1p_C: RAVE protein 94.2 2.3 5.1E-05 40.3 14.5 97 157-255 43-155 (631)
414 PF14761 HPS3_N: Hermansky-Pud 94.2 2.4 5.3E-05 34.1 15.7 128 70-216 29-165 (215)
415 PHA03098 kelch-like protein; P 94.1 5.3 0.00012 37.6 17.4 185 111-309 294-514 (534)
416 PF14727 PHTB1_N: PTHB1 N-term 94.1 4.4 9.4E-05 36.6 17.4 146 196-346 37-202 (418)
417 COG3386 Gluconolactonase [Carb 94.0 3.7 8E-05 35.5 18.1 143 102-245 112-274 (307)
418 KOG4460 Nuclear pore complex, 93.8 3.1 6.7E-05 38.0 13.6 96 102-219 105-203 (741)
419 PF07569 Hira: TUP1-like enhan 93.5 0.37 8E-06 39.4 7.2 75 234-309 18-98 (219)
420 COG3490 Uncharacterized protei 93.5 4 8.7E-05 34.3 16.9 178 64-254 120-346 (366)
421 KOG2247 WD40 repeat-containing 93.4 0.019 4.2E-07 51.0 -0.4 145 103-250 37-182 (615)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 93.3 3.4 7.4E-05 37.2 13.4 90 49-139 299-407 (415)
423 PF10313 DUF2415: Uncharacteri 93.2 0.33 7.1E-06 27.8 4.5 30 58-87 1-33 (43)
424 PHA03098 kelch-like protein; P 93.1 6.2 0.00014 37.2 15.9 52 286-339 436-497 (534)
425 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.7 1.5E-05 26.1 6.0 40 286-326 1-41 (42)
426 PF15390 DUF4613: Domain of un 92.9 8 0.00017 36.1 15.2 148 58-214 20-186 (671)
427 COG1520 FOG: WD40-like repeat 92.5 7.4 0.00016 34.7 21.8 200 113-317 69-279 (370)
428 PF07995 GSDH: Glucose / Sorbo 92.4 3.3 7.1E-05 36.3 12.1 109 229-340 4-135 (331)
429 PF07569 Hira: TUP1-like enhan 92.4 0.99 2.2E-05 36.9 8.2 62 284-346 18-93 (219)
430 PF10313 DUF2415: Uncharacteri 92.3 0.86 1.9E-05 26.1 5.4 30 278-307 2-34 (43)
431 KOG2377 Uncharacterized conser 91.9 2 4.4E-05 38.4 9.8 118 55-174 64-186 (657)
432 KOG2247 WD40 repeat-containing 91.8 0.03 6.4E-07 49.8 -1.3 142 188-340 38-180 (615)
433 TIGR03074 PQQ_membr_DH membran 91.7 15 0.00031 36.3 23.4 147 112-259 260-480 (764)
434 COG3490 Uncharacterized protei 91.5 7.8 0.00017 32.7 20.7 226 61-304 71-346 (366)
435 TIGR03118 PEPCTERM_chp_1 conse 91.1 8.9 0.00019 32.7 26.2 90 243-339 217-324 (336)
436 PF11715 Nup160: Nucleoporin N 90.9 1.8 3.9E-05 41.0 9.4 72 67-138 156-256 (547)
437 KOG1916 Nuclear protein, conta 90.8 0.6 1.3E-05 45.1 5.9 172 52-257 127-324 (1283)
438 PF08728 CRT10: CRT10; InterP 90.8 3 6.4E-05 40.1 10.4 102 154-255 113-245 (717)
439 PF14870 PSII_BNR: Photosynthe 90.6 10 0.00022 32.6 25.5 149 184-343 144-299 (302)
440 PRK13684 Ycf48-like protein; P 90.4 12 0.00026 32.9 28.0 151 185-345 173-328 (334)
441 KOG1916 Nuclear protein, conta 90.3 0.23 4.9E-06 47.8 2.8 98 248-347 153-264 (1283)
442 PHA02790 Kelch-like protein; P 90.2 16 0.00034 34.0 15.7 142 68-217 271-426 (480)
443 COG3204 Uncharacterized protei 90.2 11 0.00023 32.1 19.1 165 142-308 85-265 (316)
444 PF11715 Nup160: Nucleoporin N 90.1 2 4.3E-05 40.7 9.0 37 278-314 216-256 (547)
445 PRK10115 protease 2; Provision 89.2 23 0.0005 34.6 28.8 110 102-213 128-254 (686)
446 PF08801 Nucleoporin_N: Nup133 89.1 13 0.00029 33.8 13.3 29 319-347 190-218 (422)
447 smart00564 PQQ beta-propeller 89.0 1.2 2.5E-05 23.6 4.0 26 289-314 7-32 (33)
448 PF07995 GSDH: Glucose / Sorbo 88.7 16 0.00034 32.1 24.3 52 59-111 3-59 (331)
449 COG4590 ABC-type uncharacteriz 88.5 2.6 5.7E-05 37.7 7.7 162 54-218 217-390 (733)
450 PF13449 Phytase-like: Esteras 88.2 17 0.00037 31.8 17.5 148 186-334 21-230 (326)
451 TIGR03606 non_repeat_PQQ dehyd 88.2 21 0.00045 32.8 19.5 53 186-238 31-90 (454)
452 PF14761 HPS3_N: Hermansky-Pud 87.6 13 0.00029 29.9 12.5 48 197-245 29-78 (215)
453 KOG1900 Nuclear pore complex, 86.4 13 0.00027 38.2 11.7 136 120-257 97-273 (1311)
454 PRK10115 protease 2; Provision 86.4 35 0.00075 33.4 31.8 192 58-255 127-343 (686)
455 PF07250 Glyoxal_oxid_N: Glyox 86.2 18 0.00039 30.0 11.5 148 168-318 49-209 (243)
456 KOG1897 Damage-specific DNA bi 86.2 39 0.00084 33.8 29.0 136 165-306 470-613 (1096)
457 PF02333 Phytase: Phytase; In 85.7 26 0.00055 31.3 17.3 187 67-257 66-291 (381)
458 COG3823 Glutamine cyclotransfe 85.6 17 0.00038 29.2 14.8 102 111-214 55-158 (262)
459 PF01011 PQQ: PQQ enzyme repea 85.0 2.7 5.9E-05 23.2 4.1 27 290-316 2-28 (38)
460 KOG1900 Nuclear pore complex, 84.6 14 0.00031 37.8 11.2 144 202-347 95-271 (1311)
461 PF14269 Arylsulfotran_2: Aryl 84.4 6.8 0.00015 33.8 8.2 68 279-346 146-218 (299)
462 PF14781 BBS2_N: Ciliary BBSom 83.1 17 0.00036 27.0 12.4 115 189-315 3-134 (136)
463 PF12657 TFIIIC_delta: Transcr 82.9 9.6 0.00021 29.8 7.9 27 320-346 87-119 (173)
464 PF12657 TFIIIC_delta: Transcr 82.4 10 0.00023 29.6 7.9 29 102-130 87-121 (173)
465 PLN02193 nitrile-specifier pro 81.7 44 0.00096 31.0 16.5 52 287-339 328-387 (470)
466 TIGR01063 gyrA DNA gyrase, A s 80.4 67 0.0014 32.2 26.0 230 109-344 493-765 (800)
467 PF10214 Rrn6: RNA polymerase 80.3 41 0.0009 33.4 12.8 116 231-347 150-275 (765)
468 PF08801 Nucleoporin_N: Nup133 80.1 39 0.00085 30.7 12.0 30 228-257 191-220 (422)
469 KOG4659 Uncharacterized conser 79.6 84 0.0018 32.9 22.3 17 280-296 596-612 (1899)
470 TIGR02276 beta_rpt_yvtn 40-res 79.5 7.1 0.00015 21.7 4.7 30 154-183 3-32 (42)
471 PHA02790 Kelch-like protein; P 79.5 54 0.0012 30.5 15.5 101 112-217 272-387 (480)
472 KOG1983 Tomosyn and related SN 79.5 80 0.0017 32.5 14.7 29 59-87 37-65 (993)
473 PF05694 SBP56: 56kDa selenium 78.7 52 0.0011 29.9 18.3 186 156-347 89-341 (461)
474 COG5290 IkappaB kinase complex 78.3 72 0.0016 31.4 13.7 134 190-331 207-349 (1243)
475 PF13449 Phytase-like: Esteras 78.1 47 0.001 29.1 17.1 31 57-87 19-55 (326)
476 TIGR03118 PEPCTERM_chp_1 conse 77.5 21 0.00046 30.5 8.4 69 278-346 24-116 (336)
477 COG4590 ABC-type uncharacteriz 76.5 32 0.0007 31.2 9.6 157 99-258 219-388 (733)
478 PF01011 PQQ: PQQ enzyme repea 76.3 7.9 0.00017 21.3 4.0 27 198-224 2-28 (38)
479 PRK05560 DNA gyrase subunit A; 73.7 1E+02 0.0023 30.9 26.6 260 66-331 495-794 (805)
480 PF03088 Str_synth: Strictosid 71.9 29 0.00062 23.7 7.8 43 201-244 32-74 (89)
481 KOG2377 Uncharacterized conser 70.6 87 0.0019 28.7 11.9 100 226-332 66-167 (657)
482 KOG2280 Vacuolar assembly/sort 70.5 1.1E+02 0.0024 29.9 20.6 170 80-256 65-246 (829)
483 PF05935 Arylsulfotrans: Aryls 69.9 95 0.0021 28.9 17.5 126 190-318 153-313 (477)
484 PF07676 PD40: WD40-like Beta 69.9 16 0.00035 20.0 4.7 26 313-338 3-28 (39)
485 PF13570 PQQ_3: PQQ-like domai 69.6 9.4 0.0002 21.2 3.4 21 287-307 20-40 (40)
486 TIGR03548 mutarot_permut cycli 69.6 75 0.0016 27.6 17.5 62 156-217 125-197 (323)
487 PLN02153 epithiospecifier prot 69.4 79 0.0017 27.7 20.7 53 287-340 251-325 (341)
488 PF03022 MRJP: Major royal jel 69.2 73 0.0016 27.3 17.0 167 166-337 35-254 (287)
489 KOG3522 Predicted guanine nucl 68.2 1.3E+02 0.0028 29.8 12.1 67 186-256 628-697 (925)
490 PF12768 Rax2: Cortical protei 68.0 77 0.0017 27.1 11.8 98 207-309 17-126 (281)
491 PRK13684 Ycf48-like protein; P 67.3 88 0.0019 27.5 22.8 108 226-344 172-284 (334)
492 TIGR03548 mutarot_permut cycli 67.3 85 0.0018 27.3 18.8 60 196-256 124-194 (323)
493 TIGR03547 muta_rot_YjhT mutatr 67.1 88 0.0019 27.5 18.9 40 299-340 291-332 (346)
494 PF14781 BBS2_N: Ciliary BBSom 67.0 50 0.0011 24.5 13.1 106 107-215 5-126 (136)
495 PF11635 Med16: Mediator compl 66.8 1.4E+02 0.0031 29.7 17.5 187 65-251 56-345 (753)
496 PF02333 Phytase: Phytase; In 66.7 97 0.0021 27.8 21.7 193 111-307 67-291 (381)
497 TIGR03547 muta_rot_YjhT mutatr 64.8 98 0.0021 27.2 15.1 12 122-133 168-179 (346)
498 KOG3522 Predicted guanine nucl 64.3 1.6E+02 0.0034 29.3 13.6 135 70-214 548-697 (925)
499 PF14779 BBS1: Ciliary BBSome 62.3 43 0.00092 28.1 7.0 56 289-344 196-254 (257)
500 PF07250 Glyoxal_oxid_N: Glyox 59.2 1E+02 0.0023 25.6 12.2 133 208-343 48-194 (243)
No 1
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-61 Score=381.61 Aligned_cols=310 Identities=66% Similarity=1.137 Sum_probs=300.4
Q ss_pred CCCCccCCCCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEE
Q 019006 38 NGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIIS 117 (347)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 117 (347)
.+.++..++..|++.+.||++.|+.+.|+|+|..|||||.|..|.+|++.++++.+..+++|+++|..+.|.+|++.|++
T Consensus 28 ~~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 28 LGKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred hcccccccccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEE
Confidence 55666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
+|.|++++.||.++|+..++++.|...++.+.+...+..++.+|+.|+++++||+|++..+++++.+.+++++.|..++.
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.+++|+-|+.|++||++.++..+.+.+|.+.|+.|..+|+|.++++.+.|.++++||++++.+..++++.+.++.++++.
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
....++|+|++.++.+|+.|+.+++||..+...+++++||.+.|+++.|||..++|.+++.|.+|++.+|
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-51 Score=331.52 Aligned_cols=288 Identities=28% Similarity=0.556 Sum_probs=254.2
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.||.++|.+++|+|+|..||+|+.|.++++||+..+ .+....++|..-|.+++|+|||+.|++|+.||+|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 357799999999999999999999999999999999754 5677899999999999999999999999999999999999
Q ss_pred CCcee-eeeeccCcceeEeecCCC----CCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 131 TGKQI-KKMAEHNSFVNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 131 ~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+++++ ..+..|...|..+++.|- ...++++++.||.++|||+..+.++..+. |...|+|+.|-- ..++++|+.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCC
Confidence 88764 568889999999887552 23479999999999999999888877765 557899999975 358999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEEC-----------CCCC-------------------------EEEEEcCCC
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLS-----------PDGS-------------------------YLLTNGMDC 248 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~-----------~~~~-------------------------~l~t~~~d~ 248 (347)
|++|++|+...|.+..++++|...|+.++.+ |.++ .|++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999999999999999999999998876 3344 499999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
++.+|+-.. ..+++..+.+|+ ..|..+.||||++++|++|.|+.|++||.++|+.+..++||-..|..++|+.
T Consensus 347 tlflW~p~~---~kkpi~rmtgHq----~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 347 TLFLWNPFK---SKKPITRMTGHQ----ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred eEEEecccc---cccchhhhhchh----hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 999998643 233445556664 5688999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
|.++|+|+|.|.++++||+
T Consensus 420 DsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred CccEEEEcCCCceEEEEEe
Confidence 9999999999999999985
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-50 Score=330.07 Aligned_cols=292 Identities=26% Similarity=0.493 Sum_probs=260.0
Q ss_pred CCCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-----CCCEEEEec
Q 019006 45 SLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-----DGSQIISAS 119 (347)
Q Consensus 45 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~~ 119 (347)
..++|.++..||..-|.|++|+|||..||+|+.||+|++||.......-..+.+|+..|++++|.| ..++|++++
T Consensus 145 ~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 145 DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 456788999999999999999999999999999999999998655555668999999999999975 567999999
Q ss_pred CCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEc-----
Q 019006 120 PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFS----- 193 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~----- 193 (347)
.||.++|||+..++++..+.+|...|.++++-.. .++++|+.|++|++|+...+..+..+.. ...|+.++.+
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence 9999999999999999999999999998887644 5899999999999999998888877754 4567766654
Q ss_pred ------CCCC-------------------------eEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEE
Q 019006 194 ------DASD-------------------------KIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 194 ------~~~~-------------------------~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l 241 (347)
|.++ .+++|+.|.++.+|+.... +++..+.+|+..|+.+.|+||++++
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI 382 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE
Confidence 3333 4999999999999987544 4677888999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
|+++-|..|++||.++ ++.+..+++|. ..|+.++|+.|.++|++||.|.++++||++++++.+.++||..+|
T Consensus 383 ASaSFDkSVkLW~g~t----Gk~lasfRGHv----~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRT----GKFLASFRGHV----AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred EEeecccceeeeeCCC----cchhhhhhhcc----ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 9999999999999885 44567788774 579999999999999999999999999999999999999999999
Q ss_pred eeEEEcCCCCEEEEecCCCcEEeec
Q 019006 322 NESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+.|+|++..+++++.|..+++|.
T Consensus 455 f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-50 Score=332.63 Aligned_cols=282 Identities=25% Similarity=0.423 Sum_probs=260.6
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEEEECCCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 132 (347)
|-+.+|..+.|++++.+||||+.+|.+++|+.. ++.....+.+|+..|.++.|+|. +..|+||+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecC-CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 678899999999999999999999999999985 56778899999999999999996 568999999999999999998
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
..+..+.+|...|..++|+|++ .++.+++.|.+-++||++++..+... .|...|.+++|.++|..+++|+.|..-+||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred cchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 9999999999999999999987 58899999999999999988765444 355689999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CCCE
Q 019006 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSK 290 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~ 290 (347)
|+|++.+++.+.+|...|.+|+|+|+|-.|||||.|++++|||++.. +.+..+.+|. +.|..+.|+| .|.+
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~----nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR----SELYTIPAHS----NLVSQVKYSPQEGYF 402 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc----ccceeccccc----chhhheEecccCCeE
Confidence 99999999999999999999999999999999999999999999853 3466777774 5688899998 7899
Q ss_pred EEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 291 VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+++|.|+++++|...+..+++.+.||++.|.++.+++++..|+|+|.|.++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999994
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=296.69 Aligned_cols=290 Identities=21% Similarity=0.379 Sum_probs=258.1
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
+..++|+||.+.|++|.|++|.+.|++++.||.+.+||.....+ ...++-...-|..++|+|+|+++++|+.|....||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 34478999999999999999999999999999999999875433 34455566789999999999999999999999999
Q ss_pred ECCCC------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC-CCCeE
Q 019006 128 DVETG------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD-ASDKI 199 (347)
Q Consensus 128 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l 199 (347)
++.+. +..+.+..|.+++.+|.+..+ ..+++++.|.++.+||+++++.++.|. |...|.+++++| +++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 99854 345678899999998888764 468899999999999999999998886 457899999999 89999
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
++|+.|+..++||+|.+.++.++.+|...|++++|.|+|.-+++|+.|++.++||+|.. +.+..+.. ......+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD----~~~a~ys~--~~~~~gi 276 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD----QELAVYSH--DSIICGI 276 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC----cEEeeecc--CcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999842 22333332 2334679
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+++||..|++|++|..|..+.+||.-.++.+..+.||++.|.++..+|++--++|+|-|.+++||-
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999993
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-43 Score=275.54 Aligned_cols=286 Identities=27% Similarity=0.427 Sum_probs=247.3
Q ss_pred eEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
.+|++|.+.|..++..+. .+.|.+++.|.++.+|++.... ...+.+.||...|..+..+++|++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 468899999999999886 5789999999999999997542 23567899999999999999999999999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--CCceEEEEEcCC--CCeEEE
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDA--SDKIYT 201 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~ 201 (347)
+||+.+++..+.|.+|...|.++++++++. .+++|+.|.+|++||+........... ...|+|+.|+|. ..++++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 999999999999999999999999988764 689999999999999976655444333 567999999998 678999
Q ss_pred EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
++.|++|++||+++.+....+.+|++.++.++++|||..+++|+.||.+.+||++. .+++..+.. ...|.+
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~----~k~lysl~a-----~~~v~s 238 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE----GKNLYSLEA-----FDIVNS 238 (315)
T ss_pred ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC----CceeEeccC-----CCeEee
Confidence 99999999999999999999999999999999999999999999999999999984 344444433 357999
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec----CC-----ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP----GH-----TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~----~h-----~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++|+|..-.|+.+... .|+|||++++.++..++ +. ...-..++|+++|..|.++-.|+.|++|++
T Consensus 239 l~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 9999998888777655 49999999998876543 22 223478999999999999999999999975
No 7
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.6e-44 Score=298.45 Aligned_cols=295 Identities=24% Similarity=0.448 Sum_probs=256.8
Q ss_pred cCeeEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
..++.+.||+..|.++.|.| .+.+|++++.|+.|+||++......+..+.+|..+|.+++|+++|..++++|.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45788999999999999999 88999999999999999998777788899999999999999999999999999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
||+++|+.+..+.. ...+.++.+.+++.+++++|+.|+.|+.||++.++.++.+.. ...+..+.|-+.+..+++.+.|
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 99999999888753 344566778888888999999999999999999999988864 4679999999999999999999
Q ss_pred CcEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+.++||+.+.+.....+. .+.....++..+|++++++.-+.|+.|.++.+...-.. ...+.+++|. ..+.-..+.|
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~--vaGys~~v~f 440 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHS--VAGYSCQVDF 440 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc-CHhhhhccee--ccCceeeEEE
Confidence 999999998765433222 22334678999999999999999999999987643222 2234455553 3567788999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGE 346 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~ 346 (347)
||||.+|++|+.||.+++||..+-+++.++++|.+.+..+.|||..+ .+||||-||.|++||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999999999999999999999975 899999999999997
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=291.79 Aligned_cols=279 Identities=24% Similarity=0.495 Sum_probs=238.9
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
...|..|.|.|+|+.|++|+..|.+.+|+... ......+.+|.++|.++.|++++.++++|+.+|.|++|+.+-. .++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 45899999999999999999999999999732 2222356899999999999999999999999999999987543 233
Q ss_pred eeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 137 KMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 137 ~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
.+..| ...|.++++++.+ ..|++++.||+|+|||....+....+. +...|.++.|+|....+++|+.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44444 4788999999865 568999999999999998766655554 45689999999999999999999999999999
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEE
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTA 293 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~s 293 (347)
++.++.++.+|+..|..+.|+|++++|+|+|.|..++++|++.. +.+..+++| ...+.++.|+|- ..+|++
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~~~r~H----kkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELFTYRGH----KKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHHHhhcc----hhhheeeccccccccceee
Confidence 99999999999999999999999999999999999999999842 223445555 457899999995 578889
Q ss_pred eeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 294 GSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 294 gs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+.||.|..|.+...+.+..+ .+|.+.|++++|||-|.+|++++.|.+++.|.
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999999999855555444 58999999999999999999999999999984
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-43 Score=288.53 Aligned_cols=241 Identities=25% Similarity=0.492 Sum_probs=225.0
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEEeCCCCC
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
+-+.+|..+.|+.+++.|+|||.+|.+++|+..+...+..+.+|...+..+.|+|. ....+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45678999999999999999999999999999999999999999999999999998 46689999999999999999988
Q ss_pred ceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 177 AIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 177 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+++.+.+ ..+|..++|+|+|++|++++.|.+-++||++++.......+|...|.+++|++||..++|||.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 8888764 468999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC-CCCEEE
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA-TEPVIG 334 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 334 (347)
|+ ++++-.+.+|. ..|.+++|+|+|..|||||.|++++|||++..+.++.+++|...|..|.|+| .+.+|+
T Consensus 333 Rt----gr~im~L~gH~----k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 333 RT----GRCIMFLAGHI----KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred cc----CcEEEEecccc----cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE
Confidence 94 56777888874 6799999999999999999999999999999999999999999999999999 788999
Q ss_pred EecCCCcEEeec
Q 019006 335 SCSSDKQIYLGE 346 (347)
Q Consensus 335 s~s~D~~i~i~~ 346 (347)
|+|.|++++||-
T Consensus 405 TasyD~t~kiWs 416 (459)
T KOG0272|consen 405 TASYDNTVKIWS 416 (459)
T ss_pred EcccCcceeeec
Confidence 999999999993
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-42 Score=279.01 Aligned_cols=288 Identities=24% Similarity=0.429 Sum_probs=261.6
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.||..+|+.+-|+|+-.+.++++.|++|++||... ......++||.+.|.++.|+..|++|++++.|=.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 456789999999999999999999999999999999853 3446678999999999999999999999999999999999
Q ss_pred CC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCc
Q 019006 130 ET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 130 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
++ .++++.+.+|...|.++++.|.+ ..+++++.|.+|+.|++.++-++..++.+ ..+..+..+.||..+++++.|.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 77 56677788888888888888876 68899999999999999999999998755 46888999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCC---------------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPD---------------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~---------------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
+++|-+.+.++...+..|..+|.+++|.|. ++++.+++.|++|++||+. .+.|+-.+.+|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----tg~cL~tL~ghd 334 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----TGMCLFTLVGHD 334 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----CCeEEEEEeccc
Confidence 999999999888999999999999999653 2489999999999999997 457888888874
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..|..++|+|.|+||+++.+|+++++||+.+++++..+.+|+..++++.|+.+.++++||+-|.++++|+.
T Consensus 335 ----nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 ----NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ----ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 67999999999999999999999999999999999999999999999999999999999999999999974
No 11
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-41 Score=278.13 Aligned_cols=288 Identities=25% Similarity=0.440 Sum_probs=239.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.++..|..+|+-+.|+++|++|||++.|.+..+|.+... .+...++.+|..+|..+.||||+++|++|+.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 467899999999999999999999999999999998543 334567899999999999999999999999999999999
Q ss_pred CCCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecC
Q 019006 129 VETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 129 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+.+|.....+... ...+.+|++.|++. .+++|+.|++|..||+.... ..... ....|.++++++||+++++.+.|
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9999887766543 45677888888764 58899999999999987543 21111 22468999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
..|++|+..+......+.. ..+|++++.+.+++++++.-.+..+.+||+.. ...+..+.+|... ..+..-+|.
T Consensus 376 ~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e----~~lv~kY~Ghkq~--~fiIrSCFg 448 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEE----NKLVRKYFGHKQG--HFIIRSCFG 448 (519)
T ss_pred cceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecch----hhHHHHhhccccc--ceEEEeccC
Confidence 9999999876554434443 35799999999999999999999999999973 3445556666433 234444554
Q ss_pred -CCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 286 -PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 286 -~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
.+..++++||.|+.||+|+..+++++..+.||.+.|++|+|+|..+ ++||+|.||+|+||..
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 4568999999999999999999999999999999999999999885 8999999999999963
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-40 Score=296.97 Aligned_cols=292 Identities=34% Similarity=0.628 Sum_probs=255.3
Q ss_pred eeEecCc-cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 50 IMLLTGH-QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 50 ~~~~~~h-~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
...+.+| ...|.++.|+++|..|++++.|+.+++|+..... .....+.+|...|.+++|+|+++++++++.|++++||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3445455 7889999999999999999999999999985332 2445568999999999999999999999999999999
Q ss_pred EC-CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 128 DV-ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 128 d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
|+ ..+..++.+.+|...+.++++++.+ .++++|+.|++|++||+++++++..+.. ...|++++|++++..+++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99 5568889999999999999999998 8999999999999999999888888764 5689999999999999999999
Q ss_pred CcEEEEeCCCCc--eEEEecCCCCc--eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 206 NDVKVWDLRKGE--VSMTLQGHQDM--ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 206 g~i~iwd~~~~~--~~~~~~~~~~~--i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
+.|++||+.++. +...+.++... ++.+.|+|++.++++++.|+.+++||++. ..+...+.+|.... ..+.+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~----~~~~~~~~~~~~~~-~~~~~ 384 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS----GKSVGTYTGHSNLV-RCIFS 384 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC----CcceeeecccCCcc-eeEec
Confidence 999999999998 56677776555 89999999999999999999999999984 34455666665431 24445
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-ccCeeeEEEcCCCCEEEEec--CCCcEEeecC
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-TGSVNESVFHATEPVIGSCS--SDKQIYLGEI 347 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s--~D~~i~i~~~ 347 (347)
...++.+.++++|+.|+.|++||..++..+.++.+| ...+..++++|...++++++ .|+.+++|+.
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 556889999999999999999999999999999999 88999999999999999999 7999999973
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-40 Score=276.45 Aligned_cols=277 Identities=25% Similarity=0.473 Sum_probs=244.9
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
..|++++|+.+|.+||+|+.||.+++|+.++. ....+..|+++|.++.|+..|++|++++.|+++.+||..++..-..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 57999999999999999999999999998764 4567889999999999999999999999999999999999988888
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 216 (347)
+..|.....++.+... .-|++.+.|+.|+++-+....++.++. |+.+|.++.|+|.+..|++++.|++++||+....
T Consensus 314 f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 8777776445555433 458999999999999999888887765 5679999999999999999999999999999888
Q ss_pred ceEEEecCCCCceeEEEECCCCC---------EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 217 EVSMTLQGHQDMITGMSLSPDGS---------YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~~~~---------~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
.....+++|...|..+.|+|+|. .+++++.|++|++||+.. +.++..+..|. .+|.+++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~----gv~i~~f~kH~----~pVysvafS~~ 463 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES----GVPIHTLMKHQ----EPVYSVAFSPN 463 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC----CceeEeeccCC----CceEEEEecCC
Confidence 88899999999999999999763 689999999999999874 44566666664 57999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|++||+|+.||.|.+|+.+++++.+.+.+ .+.|..+.|+.++..|+.+-.|+.+++=|+
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999999999999999999888765 456999999999999999999999998664
No 14
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-39 Score=264.45 Aligned_cols=289 Identities=17% Similarity=0.357 Sum_probs=241.7
Q ss_pred CcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 47 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
+..+..|..|.+.|++++.+|+.+++||||.|...++|++... .....+.+|++.|+++.|+.+|.+||||+.+|.|+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 5667889999999999999999999999999999999999643 456788999999999999999999999999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
|...++.....+...-..+.-+.++|.. .+|++|+.||.+.+|.+.++...+.+.. ...+++-.|.|+|+.++++..|
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 9999998877776444455556777754 6889999999999999998777777764 5689999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecC---------------------------------------------------CCCceeEE--
Q 019006 206 NDVKVWDLRKGEVSMTLQG---------------------------------------------------HQDMITGM-- 232 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~---------------------------------------------------~~~~i~~v-- 232 (347)
|+|++||+.++++...+.. +...+.++
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 9999999999876654430 01111222
Q ss_pred -EECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 233 -SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 233 -~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
.++..-...|+|+.||+|.|||+........| .+...|.++.|-+ ..+|++++.+|.|+.||.++|+++
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 22333356788999999999998754322111 2245699999999 889999999999999999999999
Q ss_pred EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.||...|.+++++|++++++|+|.|++.+||++
T Consensus 362 ~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999999999999999999999999974
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=250.85 Aligned_cols=271 Identities=22% Similarity=0.409 Sum_probs=230.1
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeE
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNS 147 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~ 147 (347)
-+|+++|.|.+|++|.... ......++.....|..+...|+++.|++++. ..||+||++++. .+.++..|...|..
T Consensus 11 viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 4799999999999999853 3445566666778999999999998888764 679999998865 47788899899998
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe-cCCC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-QGHQ 226 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~ 226 (347)
+.|..++ ...++|++||+++|||++...+-+.+.+...|+++..+|....|++|..+|.|++||++...+...+ ....
T Consensus 89 VgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 8887665 5889999999999999999777777888899999999999999999999999999999887555443 3344
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC--CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA--PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
..|.++...|+|.+++.+...|...+|++-... ....++..++.| ...+.+|.+|||+++||++|.|.+++||+
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah----~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH----NGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc----cceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 679999999999999999999999999986421 111233334444 46789999999999999999999999999
Q ss_pred CCCc-eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 305 TTSR-RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 305 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.. ++...+.+|...+++.+|+.++.+|+|+|.|+.+++|++
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 9887 666789999999999999999999999999999999985
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-38 Score=272.26 Aligned_cols=286 Identities=32% Similarity=0.588 Sum_probs=250.3
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.+|.+.|.++.|+|++++|++++.||.+++|+.... .....+..|...+..+.|++++++|++++.||.+++|++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 356799999999999999999999999999999999643 3455678899999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+++....+..+...+..+.+.+. ..++++++.++.+.+||+++.+....+. +...+.++.|+|++.++++++.++.|+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 88778888888878888888776 4678888889999999999777666665 556799999999988888888899999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||++.++....+..|...+.++.|+|+++.+++++.|+.+++||++.. .....+..+ ...+..+.|+|++.
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~----~~~i~~~~~~~~~~ 232 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGH----ENGVNSVAFSPDGY 232 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----ceecchhhc----CCceEEEEEcCCCc
Confidence 9999988888888888889999999999999999999999999998742 223333332 34788999999999
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++++++.||.|++||..+++.+..+.+|...|..++|+|+++.+++++.|+.|++|+
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999899999999999999999999999999999999999999999999999996
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-39 Score=273.20 Aligned_cols=284 Identities=26% Similarity=0.447 Sum_probs=242.0
Q ss_pred ecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCC---eeeEEEe----------CcccceeEEEEcCCCCEEEEe
Q 019006 53 LTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDC---KNFMVLK----------GHKNAILDLHWTTDGSQIISA 118 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~---~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~ 118 (347)
+..|+.+|++.+|+|... +||+|+.|-+.++|++..+. .....++ .....|++++|+.+|..||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 344999999999999776 99999999999999986311 1100111 123579999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCce-EEEEEcCCCC
Q 019006 119 SPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI-TAVSFSDASD 197 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~ 197 (347)
+.||.+++|+. .|.++..+..|.++|.++.+...+ .++++++.|+++.+||..++...+.++.+... ..+.|-. ..
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~ 330 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-ND 330 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cc
Confidence 99999999995 467788899999999999998876 57889999999999999988887777654433 5566653 46
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.|++.+.|+.|+++-+....+..++.+|.+.|.+|.|+|.+..|++++.|++++||.... ..++..+..|. .
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~----~~~~~~l~~Hs----k 402 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ----SNSVHDLQAHS----K 402 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC----Ccchhhhhhhc----c
Confidence 789999999999999988889999999999999999999999999999999999999763 34555565553 5
Q ss_pred ceEEEEECCCCC---------EEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 278 NLLKCGWSPDGS---------KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 278 ~~~~~~~s~~g~---------~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|..+.|+|+|. .|++++.|++|++||+..+.++..+..|..+|.+++|+|+++++|+|+.||.|+||.+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 688899998764 6999999999999999999999999999999999999999999999999999999974
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-38 Score=249.92 Aligned_cols=283 Identities=22% Similarity=0.418 Sum_probs=234.7
Q ss_pred eeEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccC-CCeeeE--EEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 50 IMLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHG-DCKNFM--VLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~-~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
+..++||.+.|..++|+|- |.+|||+|.|+.|++|+..+ +.-... .-.+|+..|.+++|+|.|++|+++|.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4678899999999999998 89999999999999999863 211111 2247999999999999999999999999999
Q ss_pred EEECCCC--ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce---eec-CCCCceEEEEEcCCCCeE
Q 019006 126 AWDVETG--KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI---QTF-PDKYQITAVSFSDASDKI 199 (347)
Q Consensus 126 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~-~~~~~v~~~~~~~~~~~l 199 (347)
||.-..+ +.+..+.+|...|.+++++.++ .+|++++.|+.+.+|.+..+... ..+ +|...|..+.|+|....|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9976543 5678899999999999998876 58999999999999998855433 333 455679999999999999
Q ss_pred EEEecCCcEEEEeCC---CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 200 YTGGIDNDVKVWDLR---KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
++++.|++|++|+-. .-.+..++.+|...|.+++|++.|..|++++.|++++||-... .+. ..+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~---------~~~---~~~s 233 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT---------DLS---GMHS 233 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc---------Ccc---hhcc
Confidence 999999999999765 2357889999999999999999999999999999999997541 111 1124
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCc------eee-EEecCCccCeeeEEEcCC-CCEEEEecCCCcEEeecC
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR------RIL-YKLPGHTGSVNESVFHAT-EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~------~~~-~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~i~~~ 347 (347)
..+..++|. ...|++++.|+.|++|.-... +++ .+-..|+..|+.+.|.|. ..+|+++|.||.|++|++
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 578888888 568999999999999964432 122 245689999999999995 679999999999999975
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=263.65 Aligned_cols=287 Identities=24% Similarity=0.429 Sum_probs=250.7
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
+....+.||.+-|.++++.|-.+++++|+.|++++|||+.. .+....+.||...|..+++|+-..|+++++.|++|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 34567889999999999999999999999999999999964 45667889999999999999999999999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|++..+.++.+.+|-+.|.++..+|.. ..+++|+.|.++++||++++..+..+. |...|..+.+.|....+++|+.|+
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 999999999999999999988888765 578999999999999999999998886 668899999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+|++||++.++...++..|+..+.+++.+|....+++++.| .|+-|++... ..+..+.+| ...+.+++.+.
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g----~f~~nlsgh----~~iintl~~ns 370 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG----EFLQNLSGH----NAIINTLSVNS 370 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc----chhhccccc----cceeeeeeecc
Confidence 99999999999999999999999999999999999999988 6999998643 233334444 34577777776
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEe-----cC---CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKL-----PG---HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~---h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|| ++++|+++|.+.+||.+++-..+++ +| .+..|...+|...+..|+||..|.+|.+|+
T Consensus 371 D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 65 7789999999999999998665544 12 235688999999999999999999999985
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-38 Score=247.03 Aligned_cols=266 Identities=21% Similarity=0.426 Sum_probs=225.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
+++-..+.|+.+...|++..||+++. -.|++||+.... .+...+.+|+..|+++.|..+|+.++|||.||+++|||++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 34444678999999999999998887 479999997543 3778899999999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CC-CCceEEEEEcCCCCeEEEEecCCcE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PD-KYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.... .....+.+.|+++..++... -|++|..+|.|++||+....+...+ +. ...+.++...|+|.+++.+...|..
T Consensus 114 ~~~~-qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 114 SLSC-QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred Cccc-chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 8444 34445778999999988765 4678999999999999887554443 33 3578999999999999999999999
Q ss_pred EEEeCCCC------ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 209 KVWDLRKG------EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 209 ~iwd~~~~------~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
++|++-.. +++..++.|+..+....+||++++|+++|.|.+++||+...+ .+.-..+.+| ...++.|
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh----~rWvWdc 264 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGH----QRWVWDC 264 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecC----CceEEee
Confidence 99998654 345678899999999999999999999999999999998764 1223345555 3689999
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+||.||+||++|+.|+.+++||+..++.+..+.+|.....+++.+
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999999999999888887764
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.6e-38 Score=305.23 Aligned_cols=289 Identities=22% Similarity=0.368 Sum_probs=240.4
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-------eeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-------KNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTL 124 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i 124 (347)
+.+|.+.|.+++|+|+|++||+|+.|+.|++|+..... .....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 34589999999999999999999999999999974210 0112233 346789999987 47899999999999
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEc-CCCCeEEEEe
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS-DASDKIYTGG 203 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 203 (347)
++||+.+++.+..+..|...|.++.+++.++.++++|+.|++|++||++++..+..+.....+.++.|+ +++..+++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999999999888999999999999998766779999999999999999988887777766788999995 5688999999
Q ss_pred cCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC--cCceeEEEeccccccccceE
Q 019006 204 IDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP--QNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 204 ~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 280 (347)
.||.|++||++..+ ....+.+|...|.++.|. ++.++++++.|++|++||++.... ...++..+.+|. ..+.
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~----~~i~ 712 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT----NVKN 712 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC----CCee
Confidence 99999999998765 456778999999999997 688999999999999999974321 123455666653 4577
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE-------------ecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK-------------LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.++|+|++.+|++|+.||.|++|+......+.. ...|...|.+++|+|++..|++++.||+|+|||+
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 889999999999999999999999765543321 2345667999999999999999999999999986
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=250.40 Aligned_cols=251 Identities=27% Similarity=0.472 Sum_probs=208.6
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.+...|.||...|..+..+++|++.++++.|+++++||+.+. +....+.+|...|.+++|++|.++|++|+.|.+|++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 467789999999999999999999999999999999999754 6678899999999999999999999999999999999
Q ss_pred ECCCCceeeeeecc--CcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEe
Q 019006 128 DVETGKQIKKMAEH--NSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 128 d~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 203 (347)
++..... .++..+ ...|.+++|+|.. ..++++++.|+++++||+++.+....+.. ..-++.+.++|||...++|+
T Consensus 133 nt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 133 NTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred eecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 9875433 333333 6789999999875 67899999999999999998887777654 46799999999999999999
Q ss_pred cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-----cccc
Q 019006 204 IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-----FEKN 278 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~ 278 (347)
.||.+.+||++.++....+. |...|.+++|+|+.-. ++...+..|+|||+.... ++..++..... -...
T Consensus 212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~----~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYW-LCAATATSIKIWDLESKA----VVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred CCceEEEEEccCCceeEecc-CCCeEeeEEecCCcee-EeeccCCceEEEeccchh----hhhhccccccccccccCCcE
Confidence 99999999999998876664 6788999999997544 445556679999987532 22222211111 1235
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.+++|++||+.|++|-.|+.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7889999999999999999999999764
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-38 Score=244.02 Aligned_cols=279 Identities=29% Similarity=0.479 Sum_probs=242.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+..|+++|.++.|+-+|++.++++.|++|++||... ...+....+|...|..++.+.|...+++|+.|+.+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 456789999999999999999999999999999999863 4567788999999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC--CceeecCC-CCceEEEEEcCCCCeEEEEecCC
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR--GAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
++|+.++.+..|.+.|+.+.++... ..+++|+.|.++++||-+.. ++++.+.. ...|.++... +..+++|+.||
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999998764 58999999999999998754 56676643 4568888775 46799999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+++.||+|.|.....+.+| +|++++|+++++..+.++.|+++++.|-. .++.++.+.+|.. ...-..++++.
T Consensus 166 tvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~----tGklL~sYkGhkn--~eykldc~l~q 237 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKE----TGKLLKSYKGHKN--MEYKLDCCLNQ 237 (307)
T ss_pred cEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccc----hhHHHHHhccccc--ceeeeeeeecc
Confidence 9999999999877666664 79999999999999999999999999965 4556677777753 24456778899
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC-eeeEEEcCCCCEEEEecCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS-VNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~D~ 340 (347)
....+++||.||.|++||+.....+.+++.|+.. |.++.+||....++++...+
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 9999999999999999999999999999999888 79999999998777766544
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-38 Score=278.49 Aligned_cols=285 Identities=22% Similarity=0.400 Sum_probs=251.8
Q ss_pred EecCccccEEEEEE-CCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKF-NPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~-~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.|..+.|..|.| .|+.++||++++.+.+++|++.+. ....+.||+..|.++....+|.+|+||+.|.++++|.++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 35688899999997 578899999999999999988653 334789999999999965677899999999999999884
Q ss_pred CCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce----e------ecCCCCceEEEEEcCCC
Q 019006 131 TGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI----Q------TFPDKYQITAVSFSDAS 196 (347)
Q Consensus 131 ~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----~------~~~~~~~v~~~~~~~~~ 196 (347)
++. .+....+|...+..++.+..+..+|+++|.|+++++|++...+.. . ...|+..|++++++|..
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 432 234456788888888888888889999999999999999762211 1 12356789999999999
Q ss_pred CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
..+++|+.|.+.++|++........+.+|+..|.++.|+|..+.++|++.|++|+||.+.+ ..|.+.+.+|.
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~----fSClkT~eGH~---- 547 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST----FSCLKTFEGHT---- 547 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc----ceeeeeecCcc----
Confidence 9999999999999999999999999999999999999999999999999999999999985 46888999885
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..|.++.|-.+|..|++++.||.|++|+..+++++..+++|...|+.++-+|...+++|++.||.|.+|+
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 5789999999999999999999999999999999999999999999999999999999999999999995
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-37 Score=259.75 Aligned_cols=286 Identities=23% Similarity=0.415 Sum_probs=229.0
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe---CcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.++.|..-|++++|+|||.++|+++.||++++||-. .......+. +|++.|.++.|+||+.+++|++.|.+++|||
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 456799999999999999999999999999999964 334455565 8999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCc---ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 129 VETGKQIKKMAEHNS---FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.+.+.++++..... ....|.+- ...|++.+.+|+|.+++.....+...+. |...|+++..++++.++++|+.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence 999988888765433 11223332 3468899999999999998777666654 5568999999999999999999
Q ss_pred CCcEEEEeCCCCceE-----------EE----------------------------------------------------
Q 019006 205 DNDVKVWDLRKGEVS-----------MT---------------------------------------------------- 221 (347)
Q Consensus 205 dg~i~iwd~~~~~~~-----------~~---------------------------------------------------- 221 (347)
||.|.-||..++..- ..
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 999999998654210 00
Q ss_pred ----------ecCCC--------CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 222 ----------LQGHQ--------DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 222 ----------~~~~~--------~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
++.+. -...+++++|++..++.|+.|+.+++|.+....... ...... ....+..++
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e--e~~~~~----h~a~iT~va 494 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE--EAKLLE----HRAAITDVA 494 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc--eeeeec----ccCCceEEE
Confidence 00000 013557889999999999999999999887432211 111222 246899999
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeE-EecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILY-KLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
||||+.+||+|...+.+.+||+.+++... ++.-|...|++++|+|++.++||+|.|-.|+||++
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 99999999999999999999999887643 45569999999999999999999999999999975
No 26
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=241.69 Aligned_cols=285 Identities=21% Similarity=0.407 Sum_probs=245.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 128 (347)
+.+++|...|.+|+|+.+|..||+|+.|+++.+|+++.... .-....+|.+.|-.++|+| ..+.+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34679999999999999999999999999999999975421 1124578999999999987 567899999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+..+++...+......+. .+++|++ .+++.++.|..|.+.|.++.+.....+....+..++|+.++..++.....|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 999999888766655554 4555665 47888999999999999999988888888899999999888888888888999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
.|.....-+.+.++++|...-.+|.|+|+|+|+|+|+.|..+.+||+.. ..|.+.+..+ +=+|..+.||.||
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~isRl----dwpVRTlSFS~dg 243 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE----LICERCISRL----DWPVRTLSFSHDG 243 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH----hhhheeeccc----cCceEEEEeccCc
Confidence 9999998999999999999899999999999999999999999999874 3455555443 3468999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC---------CcEEeec
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD---------KQIYLGE 346 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---------~~i~i~~ 346 (347)
++||+||.|..|-|=++++|..+.+++ +.++...|+|||..++||.+..| |.|+|+.
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred ceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence 999999999999999999999999886 68899999999999999988865 5667664
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=270.20 Aligned_cols=287 Identities=24% Similarity=0.474 Sum_probs=244.6
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCC-CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHD-RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d-~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+.--+..|..++|+..|.+||.|+.. |.+.+|++..+ .-+...++|...+++++++|||.+|+||+.||.|+|||.
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 3344445678899999999999998764 88999999654 334556799999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--CCceEEEEEcCCCCeEEEEecCC-
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDASDKIYTGGIDN- 206 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg- 206 (347)
.++-+..+|..|.+.|..+.+...+ +.+++.+-||+++.||+......+++.. ..+..|++.+|.|..+.+|+.|.
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred cCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 9999999999999999999998775 5788999999999999998888877754 45789999999999999999886
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|++|++++|+..-.+.+|.++|.+++|+|++..|++++.|.+|++||+-.... .+..++ +...+..++|+|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~---~vEtl~-----i~sdvl~vsfrP 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG---TVETLE-----IRSDVLAVSFRP 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc---eeeeEe-----eccceeEEEEcC
Confidence 699999999999999999999999999999999999999999999999864322 233332 235688999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEec--------------------CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLP--------------------GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
||+.|++++.||.|.+||...+..+..+. +..+..+.+.+++|+..|.++|....|+|.+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 99999999999999999987655443221 1235688999999999999999999999987
Q ss_pred C
Q 019006 347 I 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 611 v 611 (893)
T KOG0291|consen 611 V 611 (893)
T ss_pred C
Confidence 4
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-38 Score=281.98 Aligned_cols=270 Identities=21% Similarity=0.409 Sum_probs=234.2
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
...+.|..|++++.+||.|-.|..|++|.+... .+..+++ ..+. ..+=+.+.|-.+.+.|-......+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~--kl~~lk~-------~~~l---~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK--KLKKLKD-------ASDL---SNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh--hhccccc-------hhhh---ccccccccchhhhhccccCCceeE
Confidence 457999999999999999999999999998531 2222222 1111 122334555557777777777777
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
.+.+|.+.|..+.++|+. .+|++++.|+++|+|.+.+...+..+. |..+|..+.|+|-|.+|++++.|++.++|....
T Consensus 446 ~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 799999999999999876 578999999999999999888777665 457899999999999999999999999999998
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
......+.+|...|.|+.|+|+.+|+++||.|.++++||+.+ +..++.+.+|. ..|.+++|||+|++|++|+
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~----G~~VRiF~GH~----~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST----GNSVRIFTGHK----GPVTALAFSPCGRYLASGD 596 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC----CcEEEEecCCC----CceEEEEEcCCCceEeecc
Confidence 888899999999999999999999999999999999999974 56688888874 6899999999999999999
Q ss_pred CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.||.|.+||+.+++++..+.+|.+.|.++.|+.++..||++|.|.+|++||+
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999999999996
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-36 Score=254.73 Aligned_cols=291 Identities=22% Similarity=0.320 Sum_probs=246.5
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCC--CeEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPD--KTLRA 126 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~i 126 (347)
...+.+|...++..+|+|.|.++|+|...|+|++|+..... .....++.-.++|.+++|+.++++|+..+.. +..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45678999999999999999999999999999999986532 2223455667899999999999999887643 33444
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+-.++|..+.++.+|...+++|.+-+..+..+++|++|+++.+|+-.--+...++. |..-|.++.|+|++..+++.+.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 44456777888999999999999999988999999999999999855444333443 34569999999999999999999
Q ss_pred CcEEEEeCCCCceEEEec---CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQ---GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|++.+||=.+++.+..+. +|++.|.+++|+||+..++|++.|.+++|||+.. ..+++.+..... ..+....|
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~----~slv~t~~~~~~-v~dqqvG~ 286 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST----NSLVSTWPMGST-VEDQQVGC 286 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec----cceEEEeecCCc-hhceEEEE
Confidence 999999999999999887 8999999999999999999999999999999974 355555544332 45566677
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
-|. ...|++-|.+|.|.+++......+..+.||...|+.+..+|+++.|.|++.||.|.-|++
T Consensus 287 lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 287 LWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 776 668999999999999999999999999999999999999999999999999999999985
No 30
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-37 Score=239.75 Aligned_cols=284 Identities=24% Similarity=0.364 Sum_probs=232.6
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..++||+.+++-++|+.+|.+|++++.|.+..+|-.. +.+.+....||+++|++++.+-+.++++||+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 3688999999999999999999999999999999763 334567889999999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEE----cCCCceEEEeCCC-------CCceeecC-CCCceEEEEEcCCCCe
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSG----SDDGTAKLWDMRQ-------RGAIQTFP-DKYQITAVSFSDASDK 198 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~----~~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~ 198 (347)
+|+++..+. -+..|..+.++..+...+++. +..+.|.++|++. ..+...++ ....++.+.|.|.+++
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 999988775 345677788877765333322 2346789999883 33344443 4578999999999999
Q ss_pred EEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+++|..||.|.+||+++++. +...+.|...|+.|.++++..+++|++.|.+-++||++.. .+++.+.. +.
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty~t-----e~ 232 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTYTT-----ER 232 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEeee-----cc
Confidence 99999999999999999854 4455789899999999999999999999999999999854 34444433 35
Q ss_pred ceEEEEECCCCCEEEEeeCCC--------------eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEE
Q 019006 278 NLLKCGWSPDGSKVTAGSSDR--------------MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg--------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
++.+.+++|-...++.|+... ..++|++-..+.+.+++||-++|+.++|||+++..+|+++||.|+
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 788999999877777765421 123445444566778999999999999999999999999999999
Q ss_pred ee
Q 019006 344 LG 345 (347)
Q Consensus 344 i~ 345 (347)
+.
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 85
No 31
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.5e-38 Score=260.01 Aligned_cols=288 Identities=27% Similarity=0.421 Sum_probs=245.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
..+..|.+.|..+.|-++...|++|+.|..|++|+..+.. .....+.|..+.|+++.|.+++.++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4577899999999999999999999999999999987543 234567788889999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
...+...++.+|...|....+..... .+++|+.|.+|++||+....+..+.-....+..++.+ ...+++|..|++|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence 99999999999999998887765543 3899999999999999987777766555566666665 45788999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||.++.....+...+. .|+++..++++..+++++.|.++.+.|++.... ...+......-......+.|||++.
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI----~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI----RQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE----EEEeeccccccccccceeEECCCCc
Confidence 99999999888888765 899999999999999999999999999986432 2233322222223577889999999
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecCCcc--CeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+++||.||.|+||++.++++..++..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999998876544 599999999999999999999999995
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9e-36 Score=235.76 Aligned_cols=244 Identities=26% Similarity=0.487 Sum_probs=217.0
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
.+.+++|...|.++.|++|.++|++++.||.+.|||.-+...+..+......|..|+++|.+ ++++.|+-|+..-||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEec
Confidence 36799999999999999999999999999999999998888888888889999999999886 58899999999999999
Q ss_pred CCCC------ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC-CCCEEEEE
Q 019006 173 RQRG------AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP-DGSYLLTN 244 (347)
Q Consensus 173 ~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~ 244 (347)
..+. ..+.+. |..-+.+..|-+ ...+++++.|.+.-+||+++++....+.+|.+.|.+++++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 8541 223333 445678888876 67899999999999999999999999999999999999999 99999999
Q ss_pred cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC--CccCee
Q 019006 245 GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG--HTGSVN 322 (347)
Q Consensus 245 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~--h~~~v~ 322 (347)
+-|+..++||+|. ..+++.+.+|. ..|.++.|.|+|.-+++||+|++.++||++..+.+..+.. --..|+
T Consensus 206 ~cD~~aklWD~R~----~~c~qtF~ghe----sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 206 GCDKSAKLWDVRS----GQCVQTFEGHE----SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred ccccceeeeeccC----cceeEeecccc----cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 9999999999994 47888998885 5688999999999999999999999999999887766642 234789
Q ss_pred eEEEcCCCCEEEEecCCCcEEeec
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++|+..+++|.++..|.++.+||
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eEEEcccccEEEeeecCCceeEee
Confidence 999999999999999999999998
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-36 Score=263.52 Aligned_cols=319 Identities=23% Similarity=0.360 Sum_probs=267.0
Q ss_pred ccccccceeeeccCCCccccCCCCCCCCCCCCCCCccCCCCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEec
Q 019006 7 QRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV 86 (347)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~ 86 (347)
+-..++.+-.+..+..+|-..+++.+..|. +.-.....+.||+..|+++.++.+...++||+. +.+++|+.
T Consensus 331 ~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~--------~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~ 401 (888)
T KOG0306|consen 331 SGGTENTLVLLANNTVEWYSLENSGKTSPE--------ADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNR 401 (888)
T ss_pred cCCcceeEEEeecCceEEEEeccCCCCCcc--------ccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEc
Confidence 334446666688888888887774433321 111122356799999999999999888888766 67999998
Q ss_pred cCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc
Q 019006 87 HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166 (347)
Q Consensus 87 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~ 166 (347)
.. .+..+.+.. ..+.+..|-|.++++++|...|.+.+||+.+...+..+..|.+.++++...+++. -+++|+.|.+
T Consensus 402 ~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDkt 477 (888)
T KOG0306|consen 402 DT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKT 477 (888)
T ss_pred cC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-ceEEecCCcE
Confidence 63 233444433 3788889999999999999999999999999999989999999999999888764 5789999999
Q ss_pred eEEEeCCC-------C-Cce-----eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEE
Q 019006 167 AKLWDMRQ-------R-GAI-----QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMS 233 (347)
Q Consensus 167 i~iwd~~~-------~-~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 233 (347)
|++||..- . +.+ ..+.-...|.|+.++|++++++++--|+++++|-+.+-+...++.||.-+|.+|.
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 99999641 1 111 1223356799999999999999999999999999999999999999999999999
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
.+||++.++|||.|..|++|-+. -+.|.+.+-+| .+.|.++.|-|+..++.++|.|+.|+-||...-+.++.
T Consensus 558 IS~DSklivTgSADKnVKiWGLd----FGDCHKS~fAH----dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLD----FGDCHKSFFAH----DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccc----cchhhhhhhcc----cCceeEEEEcccceeEEEecCcceEEeechhhhhhhee
Confidence 99999999999999999999876 35666666665 36789999999999999999999999999999999999
Q ss_pred ecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 314 LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 314 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++|..+|++++.+|+|.+++|+|.|.+|++|+
T Consensus 630 L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 630 LDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 999999999999999999999999999999996
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=255.52 Aligned_cols=244 Identities=28% Similarity=0.465 Sum_probs=213.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+++|...|++|.|+++|.+++||+.+|.|++|+..- .....+.+|. .+|.+++|+|++..+++|+.||+|+|||..
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 4678999999999999999999999999999998743 2334455555 899999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
..+..+.+.+|.-.|.++.++|.. .++++|+.|..|++||.+++.++.++ .|+..|..+.|.+++++|++++.|..++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred CCchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 888888889999999999998875 48999999999999999999988776 4677899999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
+||+++-+.++.+++|+..++++.|+|- ...|.+||.||.|..|.+...++. .......+..|++++|+|=|
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------GEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-------cCCCcccccceeeeeccccc
Confidence 9999988888999999999999999994 567888999999999998632222 11122335689999999999
Q ss_pred CEEEEeeCCCeEEEEeC
Q 019006 289 SKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~ 305 (347)
..|++|+.|..+++|.-
T Consensus 363 hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTR 379 (464)
T ss_pred eeEeecCCCcceeeecc
Confidence 99999999999999964
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=253.59 Aligned_cols=291 Identities=20% Similarity=0.365 Sum_probs=248.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC----------------------Cee------eE-----EE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD----------------------CKN------FM-----VL 96 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~----------------------~~~------~~-----~~ 96 (347)
...+.||.++|.+.-|..+...|.+-+.||.+.+|..... .++ .. .+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 3567899999999999999999999999999999987510 000 01 12
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
......|++.+|++..+.|+++-..|...+|.+-....+..+......+.++.++..+.-+.+.++.-|.+.+|+.....
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 22336799999999999999999999999999998888888887778888888887776555555566899999988776
Q ss_pred ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 177 AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 177 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
-+...+ |-..+++++++|||..+++|+.||+|++||..++-+..++..|+..|+.+.|+..++.+++.+.||+|+.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 655544 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
..+ ++.+++... -.....+++..|.|..+..|+.|.. |+||++++|+++-.+.||+++|.+++|+|.+..|+
T Consensus 422 kRY----rNfRTft~P---~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 422 KRY----RNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred ccc----ceeeeecCC---CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 854 334444332 2346778888999999999999875 99999999999999999999999999999999999
Q ss_pred EecCCCcEEeecC
Q 019006 335 SCSSDKQIYLGEI 347 (347)
Q Consensus 335 s~s~D~~i~i~~~ 347 (347)
|+|-|.+|++|++
T Consensus 495 S~SWDkTVRiW~i 507 (893)
T KOG0291|consen 495 SGSWDKTVRIWDI 507 (893)
T ss_pred eccccceEEEEEe
Confidence 9999999999986
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-35 Score=263.68 Aligned_cols=206 Identities=30% Similarity=0.552 Sum_probs=192.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.||+++|+.++|+|+.++|++++.|+++++|.+.. .......+||..+|+++.|+|-|-++||+|.|++.++|..
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 456889999999999999999999999999999999964 3455677899999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
...+.++.+.+|.+-|.++.++|+. .++++||.|.++++||+.++..++.|. |...|.+++|+|+|.+|++|+.||.|
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 9989999999999999999998875 588999999999999999999998885 56789999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
.+||+.+++.+..+.+|++.|.++.|+.+|..|+++|.|++|++||+..
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999999874
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=258.35 Aligned_cols=293 Identities=23% Similarity=0.424 Sum_probs=223.1
Q ss_pred EecC-ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC--EEEEecCCCeEEEEE
Q 019006 52 LLTG-HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS--QIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~-h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd 128 (347)
.+.+ |+++|..|+|+|.+.+||+||.|+.+++||+.+. .....++||.+.|.++.|+|+-. .|++|+.|+++++||
T Consensus 99 swKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred hHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 3445 9999999999999999999999999999999643 45678999999999999999754 488999999999999
Q ss_pred CCCCce-eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcC-------------
Q 019006 129 VETGKQ-IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSD------------- 194 (347)
Q Consensus 129 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~------------- 194 (347)
+.+... +..+..|.+.+.++.+.+++ ..+++++.|..+.+||+.+-+.....+....+-++.+-+
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 986544 67788899999999998875 457789999999999986544333333322233333322
Q ss_pred ------------------------------------------------------------------------------CC
Q 019006 195 ------------------------------------------------------------------------------AS 196 (347)
Q Consensus 195 ------------------------------------------------------------------------------~~ 196 (347)
..
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 23
Q ss_pred CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce------------
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC------------ 264 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~------------ 264 (347)
.+++++++.+.+|+|++.+..+. .+.+|.+.|.+++...+|-+|+|++.|+++++|.+.+......+
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 34444444445555544443332 45688888988885566778899999999999966321111000
Q ss_pred --------------------eEEE--ec--------------cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 265 --------------------VKIL--EG--------------HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 265 --------------------~~~~--~~--------------~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
++.. .. ....++..|.+++++|+.+++||||.|++.++|+++..
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 0000 00 11123457889999999999999999999999999999
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+++..+.||...|++|.|+|..+.|||+|.|++|+||.|
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 999999999999999999999999999999999999975
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=241.65 Aligned_cols=245 Identities=26% Similarity=0.561 Sum_probs=217.6
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|+||+++|..++|+..|..||+++.|-.+++|+..+.......+.+|...|.+++|-|-|++|++++.|.+|+.|++.+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 47899999999999999999999999999999998654444556789999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCC---------------
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA--------------- 195 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--------------- 195 (347)
+.++..+..|...+..+....++ .++++++.|.++++|-+.++++...+. ++..+-+++|.|.
T Consensus 225 g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 225 GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 99999999999999988887665 689999999999999999887665553 4567777777652
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+.++.+++.|++|++||+.++.+++++.+|.+.|.+++|+|.|+||+++..|+++++||++. .+|.+.++.|.
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~----~~cmk~~~ah~--- 376 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN----LQCMKTLEAHE--- 376 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc----ceeeeccCCCc---
Confidence 24788999999999999999999999999999999999999999999999999999999984 56777777664
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
..+.+++|+.+-.++++|+-|..+++|..
T Consensus 377 -hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 -HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -ceeEEEecCCCCceEEeccccceeeeeec
Confidence 35889999999999999999999999964
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=238.26 Aligned_cols=246 Identities=22% Similarity=0.428 Sum_probs=222.3
Q ss_pred CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
.+....+.+|.+-|.++++.|....+++|+.|++++|||+.++++..++.+|...+..+++++.. +++++++.|+.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKC 219 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKC 219 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEE
Confidence 34556789999999999999999999999999999999999999999999999999999888775 47889999999999
Q ss_pred EeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 170 WDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 170 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
||+...+.++.+. |-..|.+++.+|.-..+++|+.|.++++||+|+...+..+.+|..+|.++.+.|.+..+++|+.|+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 9999999888764 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
+|++||++. ++....+..| +..+.+++.+|+...+|+++.| .|+-|++..++.+..+.+|..-|+.++.+.
T Consensus 300 tvrlWDl~a----gkt~~tlt~h----kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 300 TVRLWDLRA----GKTMITLTHH----KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred eEEEeeecc----CceeEeeecc----cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence 999999984 3444445444 4578899999999999999998 699999999999999999999999999998
Q ss_pred CCCEEEEecCCCcEEeec
Q 019006 329 TEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~ 346 (347)
|+ .+.+|+.+|.+..||
T Consensus 371 D~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred Cc-eEEEcCCceEEEEEe
Confidence 87 666999999999997
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=252.11 Aligned_cols=306 Identities=26% Similarity=0.435 Sum_probs=231.3
Q ss_pred CCCCCccCCCC--cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCE
Q 019006 37 PNGKQRTSSLE--SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114 (347)
Q Consensus 37 ~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 114 (347)
++|..+..+.. .+..++.||..+|+++.|...|..|||||.|+.|.+||+-++.. ...++||++.|+.+.|..+.+.
T Consensus 85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-l~rL~GHkd~iT~~~F~~~~~~ 163 (888)
T KOG0306|consen 85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-LFRLRGHKDSITQALFLNGDSF 163 (888)
T ss_pred cCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-eEEeecchHHHhHHhccCCCeE
Confidence 56666666665 67788999999999999999999999999999999999986543 4578999999999999998899
Q ss_pred EEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC----------------------
Q 019006 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM---------------------- 172 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~---------------------- 172 (347)
+++.|.|++|++||+++..+..+...|...++.++..+ +++++++.|..+++|++
T Consensus 164 lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~ 240 (888)
T KOG0306|consen 164 LVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI 240 (888)
T ss_pred EEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceee
Confidence 99999999999999988766666666666665555543 34555555555555554
Q ss_pred --------------------------------------------------------------------------------
Q 019006 173 -------------------------------------------------------------------------------- 172 (347)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (347)
T Consensus 241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~ 320 (888)
T KOG0306|consen 241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS 320 (888)
T ss_pred eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 019006 173 -------------------------------------------------------------------------------- 172 (347)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (347)
T Consensus 321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn 400 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWN 400 (888)
T ss_pred hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEE
Confidence
Q ss_pred -CCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 173 -RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 173 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
.+.+++.+++.. -+.+..|-|.++++++|...|.+.+||+.+.....++++|.+.|++++.+||+..++|+|.|.+|+
T Consensus 401 ~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 401 RDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence 333333332222 222333334444444445555555555544444455678999999999999999999999999999
Q ss_pred EEeCCCCC----CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 252 IWDMRPYA----PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 252 ~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+||..-.. .+.+.++..........+.+.++.+||||++||++--|++++||-+++-+..-.+-||.-+|.++.++
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 99975211 11122222222223456789999999999999999999999999999988777888999999999999
Q ss_pred CCCCEEEEecCCCcEEeecC
Q 019006 328 ATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~i~~~ 347 (347)
|+.++++|||.|.+|+||.+
T Consensus 560 ~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred CCcCeEEeccCCCceEEecc
Confidence 99999999999999999964
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.5e-36 Score=242.86 Aligned_cols=268 Identities=27% Similarity=0.489 Sum_probs=224.6
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
....|+|+.+ |...+++|..|++|++||... ......+.||++.|.++.|. .+.|++|+.|.+|++||+++++.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 4568999987 577899999999999999853 34456788999999999996 458999999999999999999999
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
..+..|...|..+.++. .++++++.|.++.+||+.....+.. ..|...|+.+.|+. +++++++.|.+|++|
T Consensus 271 ~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred hHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 99999988888777753 4899999999999999876543321 24566789888864 699999999999999
Q ss_pred eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEE
Q 019006 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 291 (347)
++.+++.+.++.+|+..|-|+.+ .++++++|+.|.+|++||+. .+.|+..+++|. +-+.++.| |.+.+
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~----~G~cLRvLeGHE----eLvRciRF--d~krI 413 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHE----ELVRCIRF--DNKRI 413 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc----ccHHHHHHhchH----Hhhhheee--cCcee
Confidence 99999999999999988887766 58999999999999999987 467788888874 45666666 46799
Q ss_pred EEeeCCCeEEEEeCCCce---------eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 292 TAGSSDRMVYIWDTTSRR---------ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 292 ~sgs~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++|..||+|++||+..+. ++..+-.|++.|..+-| +...+++++.|.+|.|||+
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 999999999999987653 23455678999998888 4568899999999999985
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-35 Score=228.34 Aligned_cols=282 Identities=23% Similarity=0.369 Sum_probs=235.4
Q ss_pred EecCccccEEEEEECC---CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNP---AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~---~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
+-.||..+|..++|+| +|-+|++++.|+.-.+-+-+. ..=+..+.+|+++|++...+.+..+-++++.|=+.++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC-CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4569999999999985 889999999999876644321 122457899999999999998888889999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec-CCCCceEEEEEcCCCCeEEEEecCC
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.-+|..+..+ .|...|..|++..+. +.+++|+.++.+++||+.+.. +...+ .+...|..+-|....+.+++.+.|+
T Consensus 88 a~tgdelhsf-~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 88 AVTGDELHSF-EHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhh-hhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 9999888777 477888889988765 568899999999999987543 23333 3456788888888888999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+||+||.+++..+.+++- +..|+++.++++|++|.+ ...+.|++||...+.. ++.+ .+...|.+...+|
T Consensus 166 tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~----lKs~-----k~P~nV~SASL~P 234 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGL----LKSY-----KMPCNVESASLHP 234 (334)
T ss_pred ceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEE-ecCceeEEeccccccc----eeec-----cCccccccccccC
Confidence 999999999999888874 567999999999987655 5567899999875432 2222 2245678888999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+...+++|+.|..++.||..+++.+..+ .+|.++|-+|.|+|++...|++|+||+|+||..
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999999999999999999999998886 899999999999999999999999999999963
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=248.33 Aligned_cols=283 Identities=22% Similarity=0.406 Sum_probs=250.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+..|...|-++.|+|..++++++-..|.|.|||.+.+ .....+.-..-+|.+..|-+-.+.+++|+.|..||||+.++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 35568899999999999999999999999999998643 44555666677899999998889999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCC-CCceEEEEEcCC-CCeEEEEecCCcE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPD-KYQITAVSFSDA-SDKIYTGGIDNDV 208 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg~i 208 (347)
++.+..|..|..++.+++.+|.. ++++++|.|-+|++||-... .+.+++.. ..-|.+++|+|. .+.+++++-|++|
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred ceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 99999999999999999998876 57889999999999998754 45566654 467999999985 5689999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCC--CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
++|.+.+..+.+++++|...|+++.+-+. ..+|++|+.|.++++||.. ...|++++++|.+ .+..+.|+|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~----Nvs~v~fhp 237 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTN----NVSFVFFHP 237 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccc----cceEEEecC
Confidence 99999999999999999999999999774 4699999999999999986 4678999999875 467888999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.=..+++||.||++++|+..+-++...+...-+.|++++-++....++.|...|.|.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999888888877889999999999999999988888765
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=244.46 Aligned_cols=290 Identities=23% Similarity=0.401 Sum_probs=232.4
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee---eEEEe-CcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN---FMVLK-GHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~---~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
..+.+|+..|.++++.|.|..|++||.|.+|++||..+.... +..+. .....|.+++|++.|+.|+..+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 468899999999999999999999999999999999764322 22222 23347899999999999999999999999
Q ss_pred EECCCCceee------------eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeecCC------CCce
Q 019006 127 WDVETGKQIK------------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTFPD------KYQI 187 (347)
Q Consensus 127 wd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~------~~~v 187 (347)
+|-....... ..++|...+.+.+|+|.....|++++.||++++||+..-+ ..+.+.+ ...+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9955433322 2345777788889999999999999999999999987432 2333321 2458
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCce---EEEecCCCC--ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQD--MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
+.++|+++++.+|+|..||.|.+|+.++... ...-++|.. .|++|+|+++|++|++-|.|+++++||++...
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k--- 397 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK--- 397 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc---
Confidence 8999999999999999999999999764321 223356766 89999999999999999999999999999653
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeC------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
.++....+... ...-..|+|||+.++|++|+. .|.+++||..+.+.++++.-....|..+.|||.-+.|..+
T Consensus 398 kpL~~~tgL~t--~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 KPLNVRTGLPT--PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred cchhhhcCCCc--cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 33333333222 234567899999999999975 5789999999999999998888899999999999999999
Q ss_pred cCCCcEEee
Q 019006 337 SSDKQIYLG 345 (347)
Q Consensus 337 s~D~~i~i~ 345 (347)
+.||++++.
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999998874
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=259.07 Aligned_cols=247 Identities=28% Similarity=0.500 Sum_probs=205.7
Q ss_pred ec-CccccEEEEEECCCCCeEEEeeCCCcEEEEeccC--------------------------------C----------
Q 019006 53 LT-GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG--------------------------------D---------- 89 (347)
Q Consensus 53 ~~-~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~--------------------------------~---------- 89 (347)
+. +|.++|++|.|++||++||+||+|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 45 8999999999999999999999999999998754 0
Q ss_pred -----------------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCC
Q 019006 90 -----------------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSR 152 (347)
Q Consensus 90 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 152 (347)
.+++..+.||.+.|.++.|+.+ .+|++++.|++||+|++...+++..| .|+.+|++++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 0123356799999999999976 58999999999999999988888776 5999999999999
Q ss_pred CCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC--C-----
Q 019006 153 RGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--H----- 225 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~----- 225 (347)
.+..+|++|+-|+.++||++...+.+.-...+.-|++++|.|+|+..++|+.+|.+++|+.+..+.....+- |
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 999999999999999999999887776666667899999999999999999999999999987765544321 1
Q ss_pred -CCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 226 -QDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 226 -~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
...|+++.|.|... .+++.+.|..|+|+|.++. .++..+++... ...-.+..|+.||++|++|+.|..||+|
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n--~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRN--TSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccch----hhhhhhccccc--CCcceeeeEccCCCEEEEeecCceEEEE
Confidence 12799999998543 5778899999999999642 33445555432 2335677899999999999999999999
Q ss_pred eCCC
Q 019006 304 DTTS 307 (347)
Q Consensus 304 d~~~ 307 (347)
+...
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9743
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=234.26 Aligned_cols=285 Identities=21% Similarity=0.358 Sum_probs=243.3
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-Cee-e-----EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKN-F-----MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~-~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
|..+-+.|-.|+|||++|++|+.||.|.+||.... .+. + -.+--+.++|.++.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 56777899999999999999999999999997422 110 0 1233477899999999999999999999999999
Q ss_pred ECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecC
Q 019006 128 DVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 128 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+.+|.+++.|. .|...|.++.++.++. .+++++.|.++++--++.++.+..+..+ .-|+...|.++|..+++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999999999887 7888899999988765 5678999999999999999999888754 568999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecC--CCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQG--HQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|+|++|+.++.++..+++. ..-+|+++..-|. -..++.+...+++.+.++. +..++.+..... -.+...++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-----GQvVrsfsSGkR-EgGdFi~~ 443 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-----GQVVRSFSSGKR-EGGDFINA 443 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-----ceEEeeeccCCc-cCCceEEE
Confidence 9999999999998887754 3346788777774 4678888999999999875 344555432211 13567888
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+|.|.++.+.+.|+.+|.|.+.+|.+...++-|+..|..++.||..++|||=++||.+++|+
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.6e-33 Score=230.35 Aligned_cols=279 Identities=28% Similarity=0.461 Sum_probs=226.7
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC---CCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD---GSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|.+-|.++... +.++++|+.||.+++|+..+. ....+.||.++|.+++|... ...+++++.|.++++|-.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 477778777765 789999999999999999764 45678899999999998643 33699999999999998877
Q ss_pred Ccee----eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-------------------------Cceeec-
Q 019006 132 GKQI----KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-------------------------GAIQTF- 181 (347)
Q Consensus 132 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-------------------------~~~~~~- 181 (347)
+... ..-.+|...|.++...+++ ..+++|+.|.++++|+.... .++..+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 6432 2334788889888876665 57899999999999993211 111222
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.|...|.++.|++ ...+++++.|.+|+.||+.++....++.+. ..+++++.+|..++|++|+.|..+++||.|... .
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-g 334 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-G 334 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCC-C
Confidence 2446789999987 778999999999999999999988887764 568999999999999999999999999998653 2
Q ss_pred CceeEEEeccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCCce-eeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSRR-ILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
......+-+|. ..|.++.|+|... .|++|+.|+++++||+++-. .++.+.+|...|.++.|+.. ..|+|||.|
T Consensus 335 s~v~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD 409 (423)
T KOG0313|consen 335 SVVSQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGAD 409 (423)
T ss_pred ceeEEeeecch----hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCc
Confidence 23344566663 4788999999765 57899999999999999877 99999999999999999755 488999999
Q ss_pred CcEEeec
Q 019006 340 KQIYLGE 346 (347)
Q Consensus 340 ~~i~i~~ 346 (347)
.+|+|++
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 9999975
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-34 Score=247.67 Aligned_cols=242 Identities=20% Similarity=0.378 Sum_probs=216.9
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
+..++..|.++.++|....++++-.+|.|.|||.++...++.+....-+|.++.+.... +.+++|+.|..|++|+..+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccc
Confidence 44588999999999999999999999999999999999999998888888887776554 57899999999999999999
Q ss_pred CceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECC-CCCEEEEEcCCCcEEE
Q 019006 176 GAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCKLCI 252 (347)
Q Consensus 176 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~ 252 (347)
..+..|. |..-+.+++.+|..+++++++.|-+|++||.+.. .+.+++.+|...|.+++|.| |.+.+++++-|++|++
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 8888875 4567999999999999999999999999998765 57789999999999999999 5789999999999999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCC--CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD--GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
|.+.. ..+..++++|. ..|.++.|-+. -++|++|++|..|+|||..++.+++++.||...|..+.|||.-
T Consensus 168 Wslgs----~~~nfTl~gHe----kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 168 WSLGS----PHPNFTLEGHE----KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred EEcCC----CCCceeeeccc----cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 99874 34556788875 45778888664 4799999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEeec
Q 019006 331 PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~ 346 (347)
++++|||+||+++||.
T Consensus 240 piiisgsEDGTvriWh 255 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWN 255 (794)
T ss_pred cEEEEecCCccEEEec
Confidence 9999999999999994
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=219.76 Aligned_cols=278 Identities=26% Similarity=0.395 Sum_probs=224.6
Q ss_pred EEEEECCC-CCeEEEee-------CCCcEEEEeccCCCeeeEEE--eCcccceeEEEEcCCC-CEEEEecCCCeEEEEEC
Q 019006 61 YTMKFNPA-GTVIASGS-------HDRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTTDG-SQIISASPDKTLRAWDV 129 (347)
Q Consensus 61 ~~v~~~~~-~~~l~s~~-------~d~~v~~w~~~~~~~~~~~~--~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~ 129 (347)
+++.|+|- .+.||++. ..|.++|-++.+.. -+..+ -.-.+.+.+++|+++. +.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC-CeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57899983 33443332 35778888874221 11111 2235789999999864 57889999999999996
Q ss_pred CC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCC-CCeEEEEecCC
Q 019006 130 ET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDA-SDKIYTGGIDN 206 (347)
Q Consensus 130 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg 206 (347)
.. ...+..++.|...|.++.+.......+++++.|++|++|+....+.++++.. ...|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 3567888999999999999888888899999999999999998888888864 567999999987 56788999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECC-CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++++||++.....+.+..|...|.++.|+. +.+.|+|++.|+.|+.||++..+ ..+..+.+|. -.|.++.||
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~----~AVRkvk~S 243 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHG----LAVRKVKFS 243 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCc----eEEEEEecC
Confidence 999999997666666999998999999987 45688999999999999999754 3456666664 468999999
Q ss_pred CC-CCEEEEeeCCCeEEEEeCCCc-eeeEEecCCccCeeeEEEcCCC-CEEEEecCCCcEEeec
Q 019006 286 PD-GSKVTAGSSDRMVYIWDTTSR-RILYKLPGHTGSVNESVFHATE-PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 286 ~~-g~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~i~~ 346 (347)
|. ...||+++.|-++++||...+ ..+.+..-|++.+..+.|++-. .++|+++-|+.++||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 96 468899999999999999854 4556778899999999999864 5999999999999997
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-32 Score=216.44 Aligned_cols=288 Identities=20% Similarity=0.295 Sum_probs=234.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC--CCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP--DKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd 128 (347)
..+..-.+.|++|.|+++|..|++++.|.++++||.. ..+....+..++..+..++|......++.++. |.+||.-+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3455567789999999999999999999999999996 34556677777788888999877777777765 88999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+.+.+.++.|.+|...|.+++.+|.+ ..+++++.|++|++||++..++...+... .-...+|+|.|-.+|++...+.|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999999998877 67899999999999999966654443322 23457899999999999888899
Q ss_pred EEEeCCCCc--e--EEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 209 KVWDLRKGE--V--SMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 209 ~iwd~~~~~--~--~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
++||+|.-. + ...+. +.....+.|.|+|+|++++.+...+.+.+.|.-.+ .....+..+..... .-..+.
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G----~~~~tfs~~~~~~~-~~~~a~ 239 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG----TVKSTFSGYPNAGN-LPLSAT 239 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC----cEeeeEeeccCCCC-cceeEE
Confidence 999998642 2 22222 33456899999999999999999999999997643 34455555543322 236788
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+||++++++|+.||+|.+|+++++..+.++++ +.+.+.++.|+|...+++|+++.-..++.+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 999999999999999999999999999999998 788999999999999999998865555543
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=252.51 Aligned_cols=244 Identities=28% Similarity=0.551 Sum_probs=214.4
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-C
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-R 175 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~ 175 (347)
|...|.++.|+++|+.+++++.|+.+++|+....+ ....+..|...|..+++++++. ++++++.|+++++||+.. +
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC
Confidence 37789999999999999999999999999997777 6667788999999999998865 899999999999999944 4
Q ss_pred Cceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 176 GAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 176 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
..++.+ .|...|++++|+|+++.+++|+.|++|++||++++++...+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 566666 4667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC---eeeEEEcCCCC
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS---VNESVFHATEP 331 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~---v~~~~~~~~~~ 331 (347)
+...... +...+..+... . .+..+.|+|++.+|++++.|+.+++||+..+..+..+.+|... +....+++.++
T Consensus 317 ~~~~~~~--~~~~~~~~~~~-~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 317 LETGSKL--CLKLLSGAENS-A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CCCCcee--eeecccCCCCC-C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 9864321 44455544321 2 6899999999999999999999999999999999999999874 55666788999
Q ss_pred EEEEecCCCcEEeecC
Q 019006 332 VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~~ 347 (347)
++.+++.|+.|++|++
T Consensus 393 ~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDS 408 (456)
T ss_pred eEEEEeCCceEEEEeC
Confidence 9999999999999985
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=252.38 Aligned_cols=285 Identities=19% Similarity=0.362 Sum_probs=244.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
++.-.+.|-.++|+|..+++.++--.|.|.+||.. .+..+..+..|.++|..++|+|....+++||.|-.|++|+..+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 44456789999999999999999999999999984 44556678899999999999999999999999999999999999
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
+++.++.+|-.+|..+.|++.- +.++++|.|.+|+||+-.+++++..+.+ ..-|.|..|+|....+++++-|.+||+|
T Consensus 84 rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 9999999999999999998765 5789999999999999999999988864 4679999999999999999999999999
Q ss_pred eCCC--------C---------------------ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 212 DLRK--------G---------------------EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 212 d~~~--------~---------------------~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
|+.. + -..+.+.+|...|+-++|+|.-..+++|+.|+.|++|.+...+ .
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--a 240 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--A 240 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--c
Confidence 9742 1 0123567899899999999999999999999999999886321 1
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
-.+.+.++|. +.|.++-|+|...++++.|.|+.|+|||+.....+++++.-.+.-+.++-||..+++| ++.|+-+
T Consensus 241 WEvDtcrgH~----nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm 315 (1202)
T KOG0292|consen 241 WEVDTCRGHY----NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGM 315 (1202)
T ss_pred eeehhhhccc----CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCce
Confidence 1233445554 5688999999999999999999999999999999998877777889999999998885 4556556
Q ss_pred Eeec
Q 019006 343 YLGE 346 (347)
Q Consensus 343 ~i~~ 346 (347)
.+++
T Consensus 316 ~VFk 319 (1202)
T KOG0292|consen 316 IVFK 319 (1202)
T ss_pred EEEE
Confidence 5654
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=216.96 Aligned_cols=243 Identities=21% Similarity=0.371 Sum_probs=213.2
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
....+..|.++|..+.|+.+|+|.++|+.|++|++|+...+.+++++..|...|.+.....++. .+++|+.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-ccccCCCCceEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999887776654 588999999999999
Q ss_pred CCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC--ceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 172 MRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG--EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 172 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
+.+++.++.+. |..+|+.+.|+.+...+++|+.|..+++||.|+. ++++.+....+.|.++..+ +..+++|+.||
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 99999999886 4579999999999999999999999999999864 5666676667889888885 57899999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC--eeeEEE
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS--VNESVF 326 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~ 326 (347)
+++.||+|... ...- .+..+|.++.|++|++.++.++.|+.+++.|-.+|+++..+.||.+. =.+..+
T Consensus 166 tvRtydiR~G~----l~sD------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 166 TVRTYDIRKGT----LSSD------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred cEEEEEeecce----eehh------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 99999998532 2111 22357999999999999999999999999999999999999999764 357778
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.....++++|+||.|++||+
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeEEeccCCceEEEEEe
Confidence 888899999999999999996
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=250.26 Aligned_cols=277 Identities=27% Similarity=0.514 Sum_probs=238.9
Q ss_pred EecC-ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTG-HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~-h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.+ |...+.+..|. ...+++++.|++|++|+..........+.||.+.|.++++...+.+|++|+.|.++++||..
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 3444 45677788887 77899999999999999864433333489999999999999878899999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
++.+...+..|...+..+... +.++++|+.|.+|++|++.++..+..+. +...|.++..+ +..+++|+.|++|+
T Consensus 280 sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred CCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence 999999999999888766543 3578889999999999999999999888 78899999997 78999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||+.+++++.++.+|...|.++.+.+. +.+++|+.|++|++||++... +|+..+.+|... +. .....++
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~----v~--~l~~~~~ 424 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSL----VS--SLLLRDN 424 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcCCccc----cc--ccccccc
Confidence 9999999999999999999999988765 899999999999999998532 677777776532 22 2345789
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|++++.|+.|++||..+++++..+.+ |.+.|..+++. .+.+++++.|+++++||+
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 999999999999999999999999998 67888888887 678999999999999986
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3e-34 Score=241.27 Aligned_cols=249 Identities=22% Similarity=0.368 Sum_probs=216.2
Q ss_pred eeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 91 KNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
+....+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|...|.+++++..+. .+++++.|+.++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLK 283 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-eeeeeecceeee
Confidence 34567899999999999999 888999999999999999876 788999999999999999988765 578999999999
Q ss_pred EEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 169 LWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
+||+++++++..+.....++|+.|+|++ +.|++|+.|+.|+.||+|+++.+.++..|-+.|..+.|-++|+++++.+.|
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999999999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee---eEEecCCc--cCee
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI---LYKLPGHT--GSVN 322 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~---~~~~~~h~--~~v~ 322 (347)
+.+++|+.+...+... ..... .-.+.++..+|.++++++-+.|+.|.+|.+...-. ..++.||. +.-.
T Consensus 364 ks~riWe~~~~v~ik~---i~~~~----~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKN---IADPE----MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ccEEEEEcCCCccchh---hcchh----hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 9999999874322111 11111 12456788899999999999999999998755332 24677884 6678
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.|||++.+|++|+.||.+++||.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeec
Confidence 9999999999999999999999983
No 56
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.6e-31 Score=240.74 Aligned_cols=269 Identities=16% Similarity=0.237 Sum_probs=211.9
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe------------eeEEEeCcccceeEEEEcC-CCCEEEEecCCC
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK------------NFMVLKGHKNAILDLHWTT-DGSQIISASPDK 122 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~------------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 122 (347)
|-..|.....++++..+++++.+.....|+..+... ....+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 444566666777877778888888877887543211 1124789999999999999 888999999999
Q ss_pred eEEEEECCCCc-------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC
Q 019006 123 TLRAWDVETGK-------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD 194 (347)
Q Consensus 123 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 194 (347)
+|++||+.++. .+..+..|...|..+.+++....++++++.|++|++||+.++..+..+. +...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997642 3556778999999999998877799999999999999999888777765 456799999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCceEEEecCCCCc-eeEEEECCCCCEEEEEc----CCCcEEEEeCCCCCCcCceeEEEe
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPDGSYLLTNG----MDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~~~~l~t~~----~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
++..|++++.|+.|++||+++++....+.+|.+. +..+.|.+++..+++++ .|+.|++||++.... ......
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~ 255 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVD 255 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC---ceeEec
Confidence 9999999999999999999999988888888764 34678899888888765 478999999985432 222222
Q ss_pred ccccccccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCC
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATE 330 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~ 330 (347)
.+. ...+....|++++.+|++|+ .|+.|++||+.+++++..... +...+..++|.|..
T Consensus 256 ~d~---~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 256 LDQ---SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred cCC---CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 111 23455667999999999887 599999999999988766544 34567888888864
No 57
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=217.33 Aligned_cols=278 Identities=19% Similarity=0.333 Sum_probs=223.8
Q ss_pred CccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 55 GHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 55 ~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
..++.|.+|+||| ...+++.+|.|++|++|++..... .......|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3568899999999 556778999999999999975321 22345678999999999999999999999999999999998
Q ss_pred ceeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
++..+..|...|..|.+.+.. ...|++|+.|++|+.||.|...++.++....+++++..- ...++++..++.|.+|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEE
Confidence 567788899999988876543 257899999999999999999988888777788877654 4678889999999999
Q ss_pred eCCCCceEEEe-cC-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc--cc---cceEEEEE
Q 019006 212 DLRKGEVSMTL-QG-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN--FE---KNLLKCGW 284 (347)
Q Consensus 212 d~~~~~~~~~~-~~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~ 284 (347)
+++.+...... .. -+-.+++++..++....+.|+-+|.+.+..+....+. ..-.++.|... .. -.|.+++|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEecceEe
Confidence 99876432211 11 1234789998888888899999999999988764332 22234444321 11 25778999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 337 (347)
+|....|++.+.||...+||.+....+...+.|..+|.+..|+.+|.++|.+.
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999999999999888888899999999999999999998654
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-31 Score=226.95 Aligned_cols=244 Identities=31% Similarity=0.613 Sum_probs=212.1
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 174 (347)
.+++|..+|.+++|+|++++|++++.||.+++|++.+++....+..|...+..+.+.+.+ .++++++.++.+++||+..
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc
Confidence 456899999999999999999999999999999999887777777788777777777765 5788899999999999998
Q ss_pred CCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 175 RGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 175 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
++....+. +...+.++.|++++..+++++.++.|++||+++++....+..|...+.+++|+|++.++++++.|+.+++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 76666554 34579999999998888888889999999999888888888899999999999999999988889999999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 333 (347)
|++.. .....+..+ ...+.++.|+|+++.|++++.|+.|++||...++.+..+..|...+..++|+|++.++
T Consensus 163 d~~~~----~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 163 DLRTG----KCVATLTGH----TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred Ecccc----ccceeEecC----ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 98743 223334433 3468899999999999999999999999999999988888999999999999999999
Q ss_pred EEecCCCcEEeecC
Q 019006 334 GSCSSDKQIYLGEI 347 (347)
Q Consensus 334 ~s~s~D~~i~i~~~ 347 (347)
++++.|+.|++|++
T Consensus 235 ~~~~~~~~i~i~~~ 248 (289)
T cd00200 235 ASGSEDGTIRVWDL 248 (289)
T ss_pred EEEcCCCcEEEEEc
Confidence 99999999999985
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=210.77 Aligned_cols=245 Identities=20% Similarity=0.439 Sum_probs=196.0
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
.+|+..|++++|+|.|++||+|+.|.++.||.-. ++.+....+.||...|.+++|+++|++||+|+.|+.|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 5899999999999999999999999999999764 334556789999999999999999999999999999999998754
Q ss_pred c---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---CceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 133 K---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---GAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 133 ~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
. ....+..|..-|..+.++|.. .+|++++.|.+|++|+-..+ .+.+++.. ...|.+++|++.|..|++++.|
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 3 455678899999999998865 58999999999999976522 34566654 4589999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++++||-..+.-. ..|...+..+.|. +..|++++.|+.|++|.-.. .+.......+......+...|.+++|+
T Consensus 217 ~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 217 GTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD-SPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred cceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecC-CCCCchHHHHHhhhcccccccceEEEc
Confidence 9999997653211 2366789999998 56899999999999997542 111111111111112234579999999
Q ss_pred CC-CCEEEEeeCCCeEEEEeCC
Q 019006 286 PD-GSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 286 ~~-g~~l~sgs~dg~i~vwd~~ 306 (347)
|. ..+|++|+.||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 95 6899999999999999864
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=246.16 Aligned_cols=249 Identities=22% Similarity=0.351 Sum_probs=200.0
Q ss_pred Ee-CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------------------------------------
Q 019006 96 LK-GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----------------------------------------- 133 (347)
Q Consensus 96 ~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------------------- 133 (347)
+. +|.++|++|.|++||+|||+||.|+.|+||.+...+
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 899999999999999999999999999999875400
Q ss_pred -------------------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcC
Q 019006 134 -------------------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSD 194 (347)
Q Consensus 134 -------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 194 (347)
.+..+.+|.+.|.++.|+.+ ++|++++.|.++++|++....++..|.|..-|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence 01123345556666666654 589999999999999999999999999999999999998
Q ss_pred C-CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc
Q 019006 195 A-SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273 (347)
Q Consensus 195 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 273 (347)
. .++|++|+-|++||||++...+.+.....+ +.|++++|.|+|++.+.|+.+|..++|+....+......-.+.....
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 5 679999999999999999877766555444 78999999999999999999999999998864432221111111111
Q ss_pred ccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCcc--CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 274 NFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.....|+.+.|.|.. ..|++.+.|..|+|||.+...++.+++|+.. .-....|+.+++.|+++++|..||||++
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 112368899998754 3588889999999999999999999998754 4567889999999999999999999984
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=212.94 Aligned_cols=243 Identities=22% Similarity=0.345 Sum_probs=211.5
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
.+++|...|.+++|+.+|..|++++.|+++++|+++..+.... ...|.+.|..+++.+..+.++++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 4578999999999999999999999999999999987654433 35677788888899999999999999999999999
Q ss_pred CCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEE
Q 019006 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
++++++........-.-+.|+|+++++++++.|..|.+.|.++.+...+.+- .-.++.++|+.++..++.....|.|.|
T Consensus 95 r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 95 RSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred ccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEE
Confidence 9999999888877777889999999999999999999999998877666543 345788999988887777777889999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
-.... .+.+..++.|. ..+.++.|+|+|+++|+|+.|-.+.+||+...-++..+..+.=+|..+.|+.++++
T Consensus 174 Lsyps----Lkpv~si~AH~----snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 174 LSYPS----LKPVQSIKAHP----SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred Eeccc----cccccccccCC----cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 87653 34456677774 56899999999999999999999999999998888889999999999999999999
Q ss_pred EEEecCCCcEEeec
Q 019006 333 IGSCSSDKQIYLGE 346 (347)
Q Consensus 333 l~s~s~D~~i~i~~ 346 (347)
||++|+|..|-|.+
T Consensus 246 lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 246 LASASEDHFIDIAE 259 (313)
T ss_pred eeccCccceEEeEe
Confidence 99999999998765
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=222.55 Aligned_cols=280 Identities=23% Similarity=0.384 Sum_probs=240.8
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
..+.++...|..+.+++|+.|.++.++|...+ +.+..++||...|+.+.++++...+++++.|..|+||..-.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 56788888888889999999999999998643 45668999999999999999999999999999999999877666666
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC---CceEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
...|...|.....++.+ .+|++++.|++..+.|++++..+....++ ..+++.+|+|||..|.+|..|+.|++||+.
T Consensus 299 ~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 77888999888887776 57889999999999999999877666553 468999999999999999999999999999
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 294 (347)
++.....|.+|.++|..++|+.+|-||+++..|+.|++||+|..+. .+.+.-.. ...+.++.|.+.|.+|+.+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----~kt~~l~~---~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----FKTIQLDE---KKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc----cceeeccc---cccceeEEEcCCCCeEEee
Confidence 9998999999999999999999999999999999999999996432 23332211 2358899999999999999
Q ss_pred eCCCeEEEEeCCC--ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 295 SSDRMVYIWDTTS--RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 295 s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.|=+||+++-.+ ...+..+..|.+..+.+.|....++++++|.|..+++.-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 9888888887544 456778888999999999999999999999999888764
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-33 Score=226.48 Aligned_cols=278 Identities=18% Similarity=0.317 Sum_probs=219.8
Q ss_pred eEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
..|.||.+.|.+++=+|.. ..+|+|+.||.|++||+. +......+++|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4578999999999999987 789999999999999996 4455678999999999999987 67999999999999987
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCC-eEEEEecCCc
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASD-KIYTGGIDND 207 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~l~~~~~dg~ 207 (347)
+. ..+.++.... .+..+..+. ....+++++. .|-|||.....+++.+.-. ..+.++.|+|... .|++++.|+.
T Consensus 137 ~~-~p~~tilg~s-~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILGKS-VYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-Ccceeeeccc-ccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 65 3444443322 222232222 2346777765 5999999988888888754 4699999999876 4566779999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
|.+||++.+.++..+.- ...-+.++|+|.+-.+.+++.|..++.+|++... ..+....+| -..+.+++|||.
T Consensus 212 IvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dh----vsAV~dVdfspt 283 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDH----VSAVMDVDFSPT 283 (433)
T ss_pred eEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc---ccchhhccc----ceeEEEeccCCC
Confidence 99999999877665432 2346789999977778889999999999998643 334444544 357999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCc---cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHT---GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+-+++||.|.+|+||.+..+.-.-. .|. ..|.+|.|+-|.++++|||.|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999876543211 232 3689999999999999999999999996
No 64
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.6e-30 Score=235.41 Aligned_cols=251 Identities=16% Similarity=0.227 Sum_probs=196.5
Q ss_pred EeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC-CCEEEEecCCCeEEEEECCCCc--------eeeeeeccCcc
Q 019006 74 SGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKTLRAWDVETGK--------QIKKMAEHNSF 144 (347)
Q Consensus 74 s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~ 144 (347)
.|+.++.+++|+... ......+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+..|...
T Consensus 49 gGG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 49 GGGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 367789999999854 3456778999999999999996 7899999999999999997542 23356778889
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 224 (347)
|..+++++.+..++++++.|++|++||++++.....+.+...+.+++|++++..|++++.|+.|++||+++++...++.+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999877778899999999999999888776666667899999999999999999999999999999999999999
Q ss_pred CCCceeE-----EEECCCCCEEEEEcCCC----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 225 HQDMITG-----MSLSPDGSYLLTNGMDC----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 225 ~~~~i~~-----v~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
|.+.+.. ..|++++.+++++|.|+ +|+|||++... .++....... ....+......++|.++++|+
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDN--ASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecC--CccceEEeeeCCCCCEEEEEE
Confidence 9875433 33568899999988774 79999998532 2233322211 112233333355689999999
Q ss_pred CCCeEEEEeCCCceeeEEecC--CccCeeeEEEcCCCC
Q 019006 296 SDRMVYIWDTTSRRILYKLPG--HTGSVNESVFHATEP 331 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~ 331 (347)
.|+.|++|++..+.+ ..+.. +..++..++|.|+..
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 999999999987643 23322 456788999999753
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=213.61 Aligned_cols=243 Identities=25% Similarity=0.485 Sum_probs=204.3
Q ss_pred ccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCc
Q 019006 56 HQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 56 h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
-++.++.++|+++ .+.+++++.||++++||......++..++.|+..|.++.|++ ..+.++++|.|++|++|+.....
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999985 478899999999999998766677788999999999999998 55678888999999999999999
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCC-CCeEEEEecCCcEEEE
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA-SDKIYTGGIDNDVKVW 211 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 211 (347)
.+.++.+|...|....++|..++++++++.|+++++||++.......++ +..++.++.|+.- .+.+++|+.|+.|+.|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999999999999999999999999998654443344 5568999999865 4577899999999999
Q ss_pred eCCCCc-eEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CC
Q 019006 212 DLRKGE-VSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DG 288 (347)
Q Consensus 212 d~~~~~-~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g 288 (347)
|+++-+ ++.++.+|.-.|..++|+|. ...|++++.|-+++|||.... ..++.....| ..-+..+.||+ ++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~---ds~~e~~~~H----tEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ---DSAIETVDHH----TEFVCGLDWSLFDP 291 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc---hhhhhhhhcc----ceEEeccccccccC
Confidence 998754 56788999999999999996 468899999999999997632 2233333333 24467778877 67
Q ss_pred CEEEEeeCCCeEEEEeC
Q 019006 289 SKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~ 305 (347)
.++|+.+.|+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 89999999999999984
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-31 Score=231.18 Aligned_cols=272 Identities=20% Similarity=0.377 Sum_probs=226.6
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
.-+.|+ ..+.||+|.. ..|++|+.... ........+...|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+..
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 345677 4556666654 57999997533 22233344478999999999999999999999999999999998888888
Q ss_pred -cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc
Q 019006 141 -HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217 (347)
Q Consensus 141 -~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (347)
|...|.++++. ...+.+|+.|+.|..+|++..+.... + .|..+|..+.|++++.++++|+.|+.+.|||....+
T Consensus 258 ~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 258 SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 88888888776 35789999999999999997665443 3 356789999999999999999999999999998888
Q ss_pred eEEEecCCCCceeEEEECCC-CCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE-
Q 019006 218 VSMTLQGHQDMITGMSLSPD-GSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA- 293 (347)
Q Consensus 218 ~~~~~~~~~~~i~~v~~~~~-~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s- 293 (347)
....+..|...|..++|+|. ...||+|+ .|+.|++||.... ..+..+.. ...|..+.|++..+-|++
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----~~i~~vdt-----gsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG----ARIDSVDT-----GSQVCSLIWSKKYKELLST 405 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC----cEeccccc-----CCceeeEEEcCCCCEEEEe
Confidence 89999999999999999995 66888875 6999999998743 22322221 257899999999877766
Q ss_pred -eeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 294 -GSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 294 -gs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|-.++.|.||++.+..++..+.+|...|..++++|++..+++++.|.++++|++
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 456789999999999999999999999999999999999999999999999985
No 67
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=213.45 Aligned_cols=245 Identities=24% Similarity=0.419 Sum_probs=205.8
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
+.+.+.+|++.|..+.|+|+|.+|+||+.|..|.+|++. ..+....++.|.+.|..+.+..++ ..+++++.|.+++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEE
Confidence 345678999999999999999999999999999999954 345566778999999999988776 478899999999999
Q ss_pred eCCCCCceeecCCCC-ceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 171 DMRQRGAIQTFPDKY-QITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 171 d~~~~~~~~~~~~~~-~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
|.++++.+..+..+. -++++.-..-+. .+.+++.|+++++||+|+.+.+.+++. +-.++++.|..++..+++|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccC
Confidence 999999998887654 456665444444 456788999999999998877776643 45689999999999999999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCc----cC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHT----GS 320 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~----~~ 320 (347)
.|++||++. +.....+.+|. +.|+.+..+|+|.++.+-+.|..+++||.+.. +++..+.+|. ..
T Consensus 197 ~ikvWd~r~----~d~~~~lsGh~----DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 197 DIKVWDLRK----NDGLYTLSGHA----DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ceeeecccc----CcceEEeeccc----CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 999999984 45567777774 68999999999999999999999999998753 3456666663 45
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 321 VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
....+|+|++..+..++.|..+|+||
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred cceeeccCCCCccccccccceEEEee
Confidence 67889999999999999999999998
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-32 Score=244.35 Aligned_cols=246 Identities=22% Similarity=0.431 Sum_probs=215.5
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
...+..|..++|+|....++++-..|.|++||.+-+.++..|..|.++|..++|++.. +++++|+.|.+|++|+.+++.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccce
Confidence 3445688999999999999999999999999999999999999999999999999876 589999999999999999998
Q ss_pred ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 177 AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 177 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++.++. |..-|..+.|++.-+.+++++.|.+|+||+..+.+++..+.+|+..|.|..|+|....+++++-|.+|++||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 887765 4567999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcC-------------------------ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-
Q 019006 256 RPYAPQN-------------------------RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR- 309 (347)
Q Consensus 256 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~- 309 (347)
...+... .....+++| +..|.-++|+|.-.++++|++|+.|++|....-+
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 5321100 011233444 3567788999999999999999999999875432
Q ss_pred -eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 310 -ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 310 -~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+-+.+||-+.|.++.|||...++.|.|+|++|++||+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 23467899999999999999999999999999999996
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-30 Score=252.51 Aligned_cols=258 Identities=18% Similarity=0.292 Sum_probs=206.7
Q ss_pred CCcEEEEeccCCCeeeE-----EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC----c----eeeeeeccCcc
Q 019006 78 DRDIFLWHVHGDCKNFM-----VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG----K----QIKKMAEHNSF 144 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~ 144 (347)
+|.+++|+...- .... .+..|...|.+++|+|++++|++|+.|+.|+||+.... . ....+. +...
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSK 534 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCc
Confidence 566777776421 1111 23458899999999999999999999999999997532 1 111222 2345
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC-CCCeEEEEecCCcEEEEeCCCCceEEEe
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (347)
+..+++.+....++++++.||+|++||+.+++.+..+. |...|.+++|+| ++..|++|+.|+.|++||++++.....+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 66677776666789999999999999999887776664 557899999996 6789999999999999999998888887
Q ss_pred cCCCCceeEEEEC-CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 223 QGHQDMITGMSLS-PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 223 ~~~~~~i~~v~~~-~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
..+ ..+.++.|+ +++.++++|+.|+.|++||++... .....+.+| ...+..+.|. ++.+|++++.|+.|+
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h----~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGH----SKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCC----CCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 755 578999995 578999999999999999997532 123344444 3468888996 788999999999999
Q ss_pred EEeCCC------ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 302 IWDTTS------RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 302 vwd~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+||+.. ...+..+.+|...++.++|+|++.+|++++.|+.|++|+
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 999874 356788999999999999999999999999999999997
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.2e-31 Score=215.19 Aligned_cols=248 Identities=25% Similarity=0.482 Sum_probs=204.7
Q ss_pred CeeEecCccccEEEEEECCC---CCeEEEeeCCCcEEEEeccCCCe---eeEEEeCcccceeEEEEcCCCCEEEEecCCC
Q 019006 49 PIMLLTGHQSAVYTMKFNPA---GTVIASGSHDRDIFLWHVHGDCK---NFMVLKGHKNAILDLHWTTDGSQIISASPDK 122 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~---~~~l~s~~~d~~v~~w~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 122 (347)
.++++.||.++|.+++|.-. ...+++++.|.++++|..+.... .....+||+..|.++.-.++|.++++|+.|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 35678899999998888533 34699999999999998853211 1223459999999999999999999999999
Q ss_pred eEEEEECCCC-------------------------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 123 TLRAWDVETG-------------------------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 123 ~i~iwd~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
++++|+..+. ..+-.+.+|...|.++.+.+ ...+++++.|.+|+.||+.+++.
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc
Confidence 9999993211 12334667888898888877 35789999999999999999999
Q ss_pred eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEE
Q 019006 178 IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIW 253 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~w 253 (347)
+..+.....++++..+|....+++|+.|..|++||.|++. ...++.+|++.|.++.|+|.+. .|++++.|+++++|
T Consensus 294 ~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 294 KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 9999888899999999999999999999999999999764 4568899999999999999765 57789999999999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
|+|... ..+..+.+| .+.+.++.|+. +.+|++|+.|++|+++...
T Consensus 374 DvRS~k---~plydI~~h----~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 374 DVRSTK---APLYDIAGH----NDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EeccCC---CcceeeccC----CceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999632 234555555 57899999974 6799999999999999643
No 71
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2e-30 Score=207.07 Aligned_cols=276 Identities=21% Similarity=0.337 Sum_probs=220.5
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
.+..|.+|.|+|.++.|++++.||++++|+.... .....-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 3678999999999999999999999999999654 3333446889999999997 45799999999999999998764
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
..+..|...+.++...... ..+++|+.|++|++||.++......+.....|.++... ++.|++|+.+..+.+||+|+
T Consensus 88 ~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 3456788888877776443 46899999999999999987666666666678887764 67899999999999999998
Q ss_pred CceEEEec--CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-----cccceEEEEECCCC
Q 019006 216 GEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-----FEKNLLKCGWSPDG 288 (347)
Q Consensus 216 ~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g 288 (347)
.....+.. .-+-.+.++++-|++.-.++++-||.|.+=.+.+......-...++.|... ..-+|.+++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 76544222 123468999999988889999999999886665432112222233444322 22368899999999
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
..||||+.||.|.+||+.+++.+.++...+.+|..++|+.++..||.++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999888899999999999999998873
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1e-30 Score=208.95 Aligned_cols=292 Identities=23% Similarity=0.358 Sum_probs=233.3
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-----------------CeeeEEEeCcccceeEEEEcCCC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-----------------CKNFMVLKGHKNAILDLHWTTDG 112 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~ 112 (347)
...+..|.+++++-+|+|||.++|+|+.|-.|+|.|++.. -..++.+-.|.+.|.++.|+|-.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 4567899999999999999999999999999999998511 01234566799999999999999
Q ss_pred CEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec----CCCCc
Q 019006 113 SQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQ 186 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~ 186 (347)
..|++++.|++|++||+..-. ...+.......+.++.++|.+ .+++.|..-.++++||+.+-++.... .+...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999986532 222223345567788888876 57778999999999999987765443 24567
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec-CCC-CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
|+++.+++.++..++++.||.|++||--+++++.++. +|. ..|.+..|..+++|+++.|.|..+++|.+.. +++
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t----~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST----GRM 339 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC----Cce
Confidence 9999999999999999999999999988888887764 453 4699999999999999999999999999874 566
Q ss_pred eEEEecccccc-ccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 265 VKILEGHQHNF-EKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
++.+.+....- ..--....|+....+++.-. ..+.+.-||.++...+..+ -||.+.+..+..+|.++-+.|||.|..
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 66665532110 11123345777777776654 3567999999998776544 389999999999999999999999999
Q ss_pred EEeec
Q 019006 342 IYLGE 346 (347)
Q Consensus 342 i~i~~ 346 (347)
++.|-
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99983
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=233.19 Aligned_cols=283 Identities=24% Similarity=0.418 Sum_probs=231.2
Q ss_pred ccccEE---EEEEC-CCCCeEEEeeCCCcEEEEeccCCCe-----eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 56 HQSAVY---TMKFN-PAGTVIASGSHDRDIFLWHVHGDCK-----NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 56 h~~~V~---~v~~~-~~~~~l~s~~~d~~v~~w~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
|...|. ++..+ |.+++|+|||.||.|++|+...... ....++.|.+-|.++....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444554 44444 4667899999999999999853322 23457789999999999999999999999999999
Q ss_pred EECCCC--ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeec----------CCCCceEEEEE
Q 019006 127 WDVETG--KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTF----------PDKYQITAVSF 192 (347)
Q Consensus 127 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~----------~~~~~v~~~~~ 192 (347)
|+...+ -+...+..|..+|.+++....+..++++|+-|+.|.+||+..+. .+..+ .++..+++++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 998876 45667888999999988856667899999999999999998662 22221 23457999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
++.+..+++|+..+.+++||.++.+.++.+++|++.|..+..++||+.+++++.||+|++||+. +++|+.++..|.
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~ 255 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHK 255 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc----ccceeeeEEecc
Confidence 9999899999999999999999999999999999999999999999999999999999999998 567888777664
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.++++..+|+=..+++|+.||.|+.=|+++......+...+.+|..+..+....-+-.+..|+.|.=|.
T Consensus 256 ----e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 256 ----EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ----CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 4599999999999999999999999999988544444444556677777775555556667777777665
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.1e-28 Score=189.15 Aligned_cols=286 Identities=20% Similarity=0.297 Sum_probs=222.5
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--------------CeeeEEEeCcccceeEEEEcCCCCEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--------------CKNFMVLKGHKNAILDLHWTTDGSQIIS 117 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s 117 (347)
+|+ ...+|++++|+|.|.+.|+|++..+.++.....- ...+..-+.|++.|.+.+|+|+|++|++
T Consensus 28 ~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 28 ILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred Eec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 444 4567999999999999999999999998754210 1112344678999999999999999999
Q ss_pred ecCCCeEEEEECCCCce-----eeeeeccCcceeEeecCC---CCCCEEEEEc-CCCceEEEeCCCCCceeecCCC-Cce
Q 019006 118 ASPDKTLRAWDVETGKQ-----IKKMAEHNSFVNSCCPSR---RGPPLVVSGS-DDGTAKLWDMRQRGAIQTFPDK-YQI 187 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~-~~v 187 (347)
|+.|++|++..++.... ..++..|.+-+.++++.. .+..++++++ .|..|.+-|-.+++..+.+..+ ..|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999987654322 234566888888887743 2344666544 5667777787788877777544 445
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC--C-----CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--H-----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
.++ ++-.+-.+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|+.|++|..|....+||++.
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg--- 262 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG--- 262 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC---
Confidence 443 333567899999999999999998877776532 1 35689999999999999999999999999984
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
++.++.+..| ...+.++.|+|...||+++|.|..|++=|+... -.+.....|...+..+.|||..--+++.
T Consensus 263 -~r~iq~f~ph----sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 263 -GRMIQRFHPH----SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred -CceeeeeCCC----ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 4556666554 357899999999999999999999999998642 2234556799999999999999999999
Q ss_pred cCCCcEEeecC
Q 019006 337 SSDKQIYLGEI 347 (347)
Q Consensus 337 s~D~~i~i~~~ 347 (347)
|.|.++.+|.+
T Consensus 338 sadkt~tlwa~ 348 (350)
T KOG0641|consen 338 SADKTATLWAL 348 (350)
T ss_pred cCcceEEEecc
Confidence 99999999964
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=3.9e-32 Score=220.11 Aligned_cols=227 Identities=23% Similarity=0.411 Sum_probs=194.0
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
...|.++.+. +..+++|..|.+|+|||.++...+..+.+|.+.|.++.+.. .++++|+.|.+|++||..++.++.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhh
Confidence 4578998885 56899999999999999999888899999999987766543 489999999999999999999998
Q ss_pred ecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 180 TFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 180 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++-++ ..|..+.|+. +++++++.|..+.+||+.+.. +...+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 87554 5688888864 799999999999999998654 223567899999999995 569999999999999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
.+ ..++..+.+|.. .+.++. -.|+++++||+|.+|++||...|.++..+.||+.-|.++.|. ++.++|
T Consensus 348 st----~efvRtl~gHkR----GIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 348 ST----CEFVRTLNGHKR----GIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred cc----eeeehhhhcccc----cceehh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee
Confidence 74 456777877753 344443 358999999999999999999999999999999999999994 568999
Q ss_pred ecCCCcEEeecC
Q 019006 336 CSSDKQIYLGEI 347 (347)
Q Consensus 336 ~s~D~~i~i~~~ 347 (347)
|+.||+|++||+
T Consensus 416 GaYDGkikvWdl 427 (499)
T KOG0281|consen 416 GAYDGKIKVWDL 427 (499)
T ss_pred ccccceEEEEec
Confidence 999999999996
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=218.42 Aligned_cols=242 Identities=24% Similarity=0.441 Sum_probs=206.5
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 131 (347)
+.--...|+++.|-.||.+||+|+..|.|++||. .....+..+.+|+.+|..+.|+|.+ ..+++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3345678999999999999999999999999995 3334456788999999999999965 5677888999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
......+..|..+|.+..+++.++.++++|+.||+|++||++.. ..+.++.+..+|..+.+-|.|..+++++. +.|++
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence 88766888999999999999998899999999999999999976 67788899999999999999999888775 46999
Q ss_pred EeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 211 WDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 211 wd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
||+-+|. ....+..|...|+|+++..++..|+++|-|+.+++||+.++ +.+. .-.+.+++.+++.+|+++
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----Kvv~-----s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----KVVH-----SWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----EEEE-----eeecccceeeEEecCCCc
Confidence 9998654 44445559999999999999999999999999999997643 2222 234568899999999999
Q ss_pred EEEEeeCCCeEEEEeC
Q 019006 290 KVTAGSSDRMVYIWDT 305 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~ 305 (347)
.++.|..+|.+.+=+.
T Consensus 293 t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEEecccceeeeehh
Confidence 9999999998877643
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=211.49 Aligned_cols=282 Identities=21% Similarity=0.376 Sum_probs=226.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee----------------eEEE-eCcccceeEEEEcCCC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN----------------FMVL-KGHKNAILDLHWTTDG 112 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~----------------~~~~-~~h~~~v~~~~~~~~~ 112 (347)
+..+..|.-+|.+|+++|++.+.++++.|++|.-|++...... +..- ++|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4567789999999999999999999999999999987532111 0111 3788899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEE
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVS 191 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~ 191 (347)
++|++|+.|..|.||+.++.+.+..+..|.+.|...++-.. ...+++++.|.++++|++.....+.++ .|+..|..+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999998888554 456788999999999999887776654 5677888888
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe-c
Q 019006 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE-G 270 (347)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-~ 270 (347)
...-++.+-+|+.|+++++|++ ..+....+.+|.+.+-|++|-. ...+++|+.+|.|.+|++...++ +...+ .
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkp----lf~~~~A 367 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKP----LFTSRLA 367 (479)
T ss_pred hhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCc----eeEeecc
Confidence 7777777778889999999999 4455667788888999999975 56789999999999999875332 22221 2
Q ss_pred ccc-------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCccCeeeEEEcCCCC-EEEEecC
Q 019006 271 HQH-------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEP-VIGSCSS 338 (347)
Q Consensus 271 ~~~-------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~ 338 (347)
|.. +.+..+.+++..|...++|+||.+|.|++|-...+ .+++.++ -.+.|+.++|+++++ +++..+.
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 211 11137889999999999999999999999988776 4566665 568999999999999 5555554
Q ss_pred C
Q 019006 339 D 339 (347)
Q Consensus 339 D 339 (347)
.
T Consensus 447 E 447 (479)
T KOG0299|consen 447 E 447 (479)
T ss_pred c
Confidence 3
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=213.30 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=225.4
Q ss_pred cccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 57 QSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 57 ~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
.+.|.+++|+|..+ -+|+++. -.+.+|+..+ +.....+...++.|.++.|-.||+++++|+..|.|+|+|..+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch-hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 36799999999664 3444433 3577787643 2333345566788999999999999999999999999997776677
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCC-eEEEEecCCcEEEEeC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDL 213 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 213 (347)
+.+..|...+....|.+.+..++++|++|+.+++||+.+......+ .+..-|.|.+++|... .+++|+.||+|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8889999999999999999999999999999999999887753344 4566799999999866 6789999999999999
Q ss_pred CCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 214 RKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 214 ~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
+.. ..+.++ .|..+|..+.+-|.|..++++|.. .+++||+.... +.+..+. ++...|+++.+..++..|+
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~---qll~~~~----~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG---QLLTSMF----NHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc---eehhhhh----cccceEEEEEeecCCceEe
Confidence 987 455555 478899999999999999998854 89999997432 1222222 2346899999999999999
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
+||-|+.|++||+.+.+.++.+. -+++|.+++.+|++..++.|-.||.+-+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 99999999999999988888774 4689999999999999999999998754
No 79
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=204.29 Aligned_cols=246 Identities=22% Similarity=0.355 Sum_probs=201.8
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
....+.||...|+++.|+.+|.+||||+.+|.|++|+.... .....+...-..+.-|.|+|-+..|+.|+.||.+-+|.
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 34568899999999999999999999999999999998644 33344445556788899999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-----------------------C
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-----------------------Y 185 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------------~ 185 (347)
+.+....+.+.+|+..+.+-.+.|++ +.++++..||+|++||.++++++..+... .
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 99877788899999999888888885 67899999999999999988765544300 0
Q ss_pred -----------------------------ceEE---EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEE
Q 019006 186 -----------------------------QITA---VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMS 233 (347)
Q Consensus 186 -----------------------------~v~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 233 (347)
.+.+ +.++..-+..|+|+-||+|.|||+...+..+.++ |...|..+.
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~ 334 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLK 334 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEE
Confidence 0011 1122233457889999999999998777655554 778899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
|-+ ..+|++++.+|.|+.||.|. +++...+.+|. ..|...+++|++++++++|.|++.+||+..
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRt----G~l~~~y~GH~----~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDART----GQLKFTYTGHQ----MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccc----cceEEEEecCc----hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 998 78999999999999999984 56777788875 468999999999999999999999999864
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=201.94 Aligned_cols=286 Identities=19% Similarity=0.291 Sum_probs=204.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eee--EEEeCcccceeEEEEcCCCCEEE-EecCCCeEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNF--MVLKGHKNAILDLHWTTDGSQII-SASPDKTLRA 126 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~--~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~i 126 (347)
..|.||.+.|++|+|+.||..|||++.|++|++|++..-. +.. +...-.-+--+.+.|+||-+-++ ++-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4688999999999999999999999999999999985310 000 00011112347788999876554 4555567999
Q ss_pred EECCCC---ceeeee---------eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEc
Q 019006 127 WDVETG---KQIKKM---------AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFS 193 (347)
Q Consensus 127 wd~~~~---~~~~~~---------~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~ 193 (347)
|-+... .....+ ..|...+..+-. ..+..++++++.|..|.+|+++ ++.++.+.. ...-+..+.+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 876432 111100 112222222222 2345689999999999999998 666666643 3456678899
Q ss_pred CCCCeEEEEecCCcEEEEeCC---CC-----ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC---
Q 019006 194 DASDKIYTGGIDNDVKVWDLR---KG-----EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN--- 262 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~--- 262 (347)
|+|+++++++..-.|++|.+- .| ..++++++|+..|..++|+++.+.++|.+.||++++||..-.....
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999999999999863 22 2457899999999999999999999999999999999985321111
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCC
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
..++......+..-....+++.+|.|+.||.+... .+++|..++++....+ +.|++.|.+++|+++++++||+|.-
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 11221111111112344589999999999876543 7999999988766544 4799999999999999999999864
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.7e-29 Score=229.38 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=226.8
Q ss_pred cCc-cccEEEEEECCCCCeEEEee--CCCcEEEEeccCC-----------CeeeEEEeCcccceeEEEEcCCCCEEEEec
Q 019006 54 TGH-QSAVYTMKFNPAGTVIASGS--HDRDIFLWHVHGD-----------CKNFMVLKGHKNAILDLHWTTDGSQIISAS 119 (347)
Q Consensus 54 ~~h-~~~V~~v~~~~~~~~l~s~~--~d~~v~~w~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 119 (347)
-+| +..|+++..+|+|..+|||| .|+.+++|+...- .+.+.....|.+.|.|+.|++||.+||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 345 45699999999999999999 8999999986411 123345678999999999999999999999
Q ss_pred CCCeEEEEECCC-------C-----------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 120 PDKTLRAWDVET-------G-----------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 120 ~dg~i~iwd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.|+.|.||.... + +....+.+|...|.++++++++ .++++++.|++|.+||.++...+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee
Confidence 999999998762 1 2345677899999999999854 68999999999999999988777776
Q ss_pred C-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC------CceeEEEECCCCCEEEEEc----CCCcE
Q 019006 182 P-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ------DMITGMSLSPDGSYLLTNG----MDCKL 250 (347)
Q Consensus 182 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~v~~~~~~~~l~t~~----~d~~i 250 (347)
. |...|..+.|+|.|++|++-+.|++|++|+...-...+.+.++. .....+.|+|||.+|++.. .-..+
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 5 55789999999999999999999999999976655555554432 3567899999999999864 23467
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-------------C----CEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-------------G----SKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------g----~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
.|.+... .++-..+-+|. ..+..+.|+|. . ..+|+||.|+.|.||.....+++..
T Consensus 248 ~IieR~t----Wk~~~~LvGH~----~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 248 AIIERGT----WKVDKDLVGHS----APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred EEEecCC----ceeeeeeecCC----CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 7777543 23334555664 46778888761 1 1578999999999999988877754
Q ss_pred ecC-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 314 LPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 314 ~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.. ...+|.++.|+|+|-.|..||.||+|.+..+
T Consensus 320 i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 320 IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 432 2468999999999999999999999998753
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-28 Score=196.18 Aligned_cols=246 Identities=21% Similarity=0.354 Sum_probs=201.2
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC--CCceEEEeCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD--DGTAKLWDMR 173 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--d~~i~iwd~~ 173 (347)
++.....|.++.|+++|.++++++.|.++++||..+++.++.+..+.-.+...++..... .++.++. |.+|+..++.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEee
Confidence 444567899999999999999999999999999999999988876655555556554443 3445555 8899999999
Q ss_pred CCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEE
Q 019006 174 QRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 174 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
..+.++.+++ +..|+.++.+|-+..+++++.|++|++||+|..++...+..... ...+|.|+|-++|++.....|++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEE
Confidence 9999999875 56899999999999999999999999999998777666544333 34789999999999988889999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe---eeEEEcCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV---NESVFHAT 329 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v---~~~~~~~~ 329 (347)
||+|.+... +...+.-.. ........+.|||||++|+.++..+.+++.|.-+|.++..+.++...- .+..|.|+
T Consensus 167 yD~Rs~dkg--PF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 167 YDLRSFDKG--PFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEecccCCC--CceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999976322 222222211 223567889999999999999999999999999999999888876543 68899999
Q ss_pred CCEEEEecCCCcEEeecC
Q 019006 330 EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 330 ~~~l~s~s~D~~i~i~~~ 347 (347)
++++.+++.||+|++|++
T Consensus 244 s~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CcEEEEecCCCcEEEEEc
Confidence 999999999999999975
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=187.54 Aligned_cols=247 Identities=23% Similarity=0.442 Sum_probs=201.0
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCC----CCEEEEec-CCCe
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTD----GSQIISAS-PDKT 123 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~-~dg~ 123 (347)
-.-|.+.|+|.+|+|+|++||+|++|.+|++.-...+. ..-..+.-|.+.|..++|..+ +..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 35689999999999999999999999999986543221 123467789999999999643 45677665 4677
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--------CceEEEEEcCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--------YQITAVSFSDA 195 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~ 195 (347)
|++-|...|+....+.+|.+.+..+... ++.++++|+.|.+|++||++-..++..+... ..|.+++.+|.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 8888888999999999999888665432 3468999999999999999987777665421 35899999999
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
++.+++|..|....+||++.++.+..+..|...|.++.|+|...|+++++.|..|++=|+...-...-.+-.... .
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e----h 318 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE----H 318 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe----c
Confidence 999999999999999999999999999999999999999999999999999999999998632111111112222 2
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
++.+..+.|+|..--+++.|.|+++.+|-+
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEecc
Confidence 467889999999999999999999999965
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-30 Score=198.18 Aligned_cols=248 Identities=24% Similarity=0.423 Sum_probs=199.7
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--eeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--KNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
-.+|++.|+.+...--|..|||++.|++|+|+....+. ..+..|.||.++|+.++|.. .|..|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 45899999999988899999999999999999986544 45678999999999999976 799999999999999999
Q ss_pred CCCCce--eeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCC-c-ee--ecCCCCceEEEEEcCC---C--
Q 019006 129 VETGKQ--IKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRG-A-IQ--TFPDKYQITAVSFSDA---S-- 196 (347)
Q Consensus 129 ~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~-~-~~--~~~~~~~v~~~~~~~~---~-- 196 (347)
-++++- ......|...|+++++.|.. +.+|+.++.||.|.+.+.+... - .. ...|...+++++|.|. +
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887742 33456788899998887654 3467889999999999887552 1 11 2245677999999886 3
Q ss_pred ---------CeEEEEecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCC----CEEEEEcCCCcEEEEeCCCCCCc
Q 019006 197 ---------DKIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDG----SYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 197 ---------~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~----~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
+.|++|+.|+.|+||+..++. ...++.+|.+.|+.++|.|.- .++++++.||++.||-.+...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-- 244 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-- 244 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc--
Confidence 459999999999999987753 344689999999999999964 489999999999999876321
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
.....++ .+.++..++++.||+.|..|+.++.|+.|.+|--
T Consensus 245 e~wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 245 EPWKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred Ccccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1111111 1235678999999999999999999999999953
No 85
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=203.82 Aligned_cols=285 Identities=20% Similarity=0.388 Sum_probs=230.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..|.||.+.|+.++-....+++.+++.|.+.+||.++. ...+....||.+.|.+++|++.+.++++++.|++..||...
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 45789999999999887778999999999999999964 34566789999999999999999999999999999999621
Q ss_pred ------C--------Cc--------------------------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 131 ------T--------GK--------------------------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 131 ------~--------~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
. ++ .+..+.+|...|..+.+.. +...+++++.|.+..+|
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLW 299 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceee
Confidence 0 00 1223445555555544433 44578999999999999
Q ss_pred eCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 171 DMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 171 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
|++++..+..+. |+.+.+.++-+|..+.+++.+.|-+.++||.+.. ..+..+++|++.|+++.|..+ ..+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCc
Confidence 999999998875 4567888999999999999999999999999843 456689999999999999865 5689999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe-----cCCccCeee
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-----PGHTGSVNE 323 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~ 323 (347)
+|++||+++... .+..++. +..+..++.+..++.|+.--.+..|++||+...+ +.++ .+|...|.+
T Consensus 379 TvKvWdLrNMRs---plATIRt-----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 379 TVKVWDLRNMRS---PLATIRT-----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTC 449 (481)
T ss_pred eEEEeeeccccC---cceeeec-----CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeee
Confidence 999999986543 2333332 3467788888888899999999999999986543 4444 489999999
Q ss_pred EEEcCCC--CEEEEecCCCcEEeecC
Q 019006 324 SVFHATE--PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 324 ~~~~~~~--~~l~s~s~D~~i~i~~~ 347 (347)
++|..+- .-|.+||.|..+.-|+|
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred eeccccCcccccccccccceeeeeEe
Confidence 9997664 36789999999988875
No 86
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=199.80 Aligned_cols=283 Identities=20% Similarity=0.345 Sum_probs=220.2
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
-.++.|++.|.+||+|..||.|.+||..+ ...-..+.+|..+|.+++||++|+.|+|+|.|..|++||+..|..+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 67999999999999999999999999964 34455788999999999999999999999999999999999999887775
Q ss_pred ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC------CceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 140 EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK------YQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
. .+.|..+.+++...+.+++.-.+..-.+.++.... ...++.. ....+..|++.|+++++|...|.+.++|.
T Consensus 105 f-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 F-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred c-cCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 3 45677888888777777766666555555554321 1122211 12334468999999999999999999999
Q ss_pred CCCceEEEecCCC-CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc--ccc-ccceEEEEECCCCC
Q 019006 214 RKGEVSMTLQGHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ--HNF-EKNLLKCGWSPDGS 289 (347)
Q Consensus 214 ~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~s~~g~ 289 (347)
.+.+++..++-.. ..|..+.|+..|+.|+....|+.|+.|+++.....++-...-..|. ..+ .-.-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9988888776544 6788999999999999999999999999874322221111110010 000 11335778999999
Q ss_pred EEEEeeC-CCeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSS-DRMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|++.|+. ...+|+|....|.++..+.|.. ....++.|||-.+.+++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988774 4679999999999999998887 567899999999999999 778999995
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.1e-29 Score=228.50 Aligned_cols=256 Identities=24% Similarity=0.435 Sum_probs=212.2
Q ss_pred CCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-----------------CCeeeEEEeCcccceeEEEE
Q 019006 46 LESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-----------------DCKNFMVLKGHKNAILDLHW 108 (347)
Q Consensus 46 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-----------------~~~~~~~~~~h~~~v~~~~~ 108 (347)
+...+..+..|.+.|.|+.|+|||++||+|++|+.|.+|.... .++....+.+|...|.+++|
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 4456677889999999999999999999999999999998752 12345678999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-----
Q 019006 109 TTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD----- 183 (347)
Q Consensus 109 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~----- 183 (347)
+|++.+|++++.|++|.|||..+.+.+..+..|...|..+.+.|.+ +++++-+.|++|++|++..-+..+.+..
T Consensus 138 sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 138 SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred CCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 9999999999999999999999999999999999999999998886 5889999999999999766555444432
Q ss_pred --CCceEEEEEcCCCCeEEEEec----CCcEEEEeCCCCceEEEecCCCCceeEEEECCC-----CC------------E
Q 019006 184 --KYQITAVSFSDASDKIYTGGI----DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD-----GS------------Y 240 (347)
Q Consensus 184 --~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-----~~------------~ 240 (347)
...+..+.|+|||.+|++... -..+.|.+-.+.+....+-+|..+++++.|+|. .. .
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 235788999999999998643 235888887777788899999999999999872 11 5
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+|+|+.|+.|.||.....+|.-.. ..-+...|..++|+|||-.|+++|.||+|.++..+.++
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi-------~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVI-------HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhh-------hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 788999999999997543332111 12235679999999999999999999999999886643
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.2e-30 Score=210.42 Aligned_cols=243 Identities=24% Similarity=0.458 Sum_probs=205.0
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+|.|-.+.|+++.|.+++..+++++.|+.+++|++. ..+....+.||++.|+++.|......+++|+.|.+|++||+
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 45677888999999999999999999999999999995 44566788999999999999987777999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
....+.++... ...+.+++.. ...+++|..|++|++||++........+..+.|+++..++++..+.+.+.|.++.
T Consensus 291 ~k~~C~kt~l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 291 QKAYCSKTVLP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred hhhheeccccc-cccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCcee
Confidence 98877665543 2333444433 3468899999999999999999999999889999999999999999999999999
Q ss_pred EEeCCCCceEEEecCC----CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 210 VWDLRKGEVSMTLQGH----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++|+++.+....+.+. ....+.+.|||++.|+++||.||.|+||++.. .++.+.+..... +..|.+++|+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t----gKlE~~l~~s~s--~~aI~s~~W~ 440 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT----GKLEKVLSLSTS--NAAITSLSWN 440 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC----ceEEEEeccCCC--CcceEEEEEc
Confidence 9999998877766532 23478899999999999999999999999874 344444443322 2369999999
Q ss_pred CCCCEEEEeeCCCeEEEE
Q 019006 286 PDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vw 303 (347)
|.|..|++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=222.02 Aligned_cols=256 Identities=27% Similarity=0.521 Sum_probs=213.4
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
+.||.+.|.+++|..-+.+|++|+.|.++++||.. .......+.+|...|.++...+ .++++|+.|.+|++|++.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc
Confidence 78999999999998878999999999999999975 4455678899999999987764 47888999999999999999
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
..+..+.+|...|.++... ..++++|+.|++|++||+.+++++..+. |...|.++.+... +.+++|+.|++|++|
T Consensus 322 ~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVW 397 (537)
T ss_pred ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEee
Confidence 9999888899999988776 4689999999999999999999988875 4578999988765 899999999999999
Q ss_pred eCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 212 DLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 212 d~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
|+++. +++..+++|...+.++.+ .++.|++++.|++|++||... +.+.+.+.+.. ...+..+++. ...
T Consensus 398 dl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~----~~~~~~~~~~~---~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE----GECLRTLEGRH---VGGVSALALG--KEE 466 (537)
T ss_pred cCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeeccc----CceeeeeccCC---cccEEEeecC--cce
Confidence 99999 999999999998876655 578999999999999999874 45566666531 2345555544 578
Q ss_pred EEEeeCCCeEEEEeCCCceeeEEecCCc-cCeeeEEE
Q 019006 291 VTAGSSDRMVYIWDTTSRRILYKLPGHT-GSVNESVF 326 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~ 326 (347)
+++++.||.+++||++++.++..+-.+. .....+++
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 9999999999999999999887664443 23344444
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-28 Score=195.03 Aligned_cols=246 Identities=21% Similarity=0.365 Sum_probs=201.4
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC--EEEEecCCCeEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS--QIISASPDKTLR 125 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 125 (347)
.|++.+.+|.+++++++. +++++|+||.|-+|+|||+.. ......+..|.+.|+++.|.++-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 467788999999999997 589999999999999999964 345667788999999999998765 899999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+|+......+..++.|...|+.++.+|.+ ++.++.+.|+.+++||+-+++.-...+-....+.+.|+|.|.+++.+..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 99999999999999999999999998876 68889999999999999887765555555556669999999999888876
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE--
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG-- 283 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (347)
.|-+|-+.+......+.. ...+.++.|- ++.+|++|+.|+.|.+||... ..+...+.+|.. .|..+.
T Consensus 190 -~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds----~~~~~~~~AH~~----RVK~i~~~ 258 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS----DTPLTEFLAHEN----RVKDIASY 258 (362)
T ss_pred -EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC----Cccceeeecchh----heeeeEEE
Confidence 588998876654444332 2446667764 578999999999999999874 344556666643 344443
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
-.|++.+|+++|+||.|+|||.+..
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 3688999999999999999998776
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.5e-28 Score=204.40 Aligned_cols=259 Identities=24% Similarity=0.491 Sum_probs=204.8
Q ss_pred ecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccC---------CCeeeEEEeCcccceeEEEEcCCC-CEEEEecCC
Q 019006 53 LTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHG---------DCKNFMVLKGHKNAILDLHWTTDG-SQIISASPD 121 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d 121 (347)
-..|.+.|+.+++-|.. .++|+++..+.|+|||... ++.+-..+.+|...-.++.|++.. -+|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 45799999999999966 5778888999999999742 233445789999988999999853 479999999
Q ss_pred CeEEEEECCCCce-------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC--CCceeec-CCCCceEEEE
Q 019006 122 KTLRAWDVETGKQ-------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ--RGAIQTF-PDKYQITAVS 191 (347)
Q Consensus 122 g~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~--~~~~~~~-~~~~~v~~~~ 191 (347)
++|.+||+..... ...+..|...|.++++++....+|++++.|+.+.|||+|+ .++.... .+...+.|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999975432 3456788999999999999999999999999999999995 2222222 3567899999
Q ss_pred EcCCCC-eEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 192 FSDASD-KIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 192 ~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
|+|-+. .||+|+.|++|++||+|+- ++..++.+|.+.|..|.|+|+ ...|+++|.|+.+.+||+........
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~----- 354 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS----- 354 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-----
Confidence 998765 6678999999999999975 467889999999999999996 46788999999999999864221100
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
++. ..| ...++++...||...|.++.|+|..+ .|+|++.|+.+.||++
T Consensus 355 -----------------~ed------a~d--------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 355 -----------------PED------AED--------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred -----------------hhh------hcc--------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 000 001 12456677888999999999999988 5668888999999975
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.6e-28 Score=213.79 Aligned_cols=277 Identities=22% Similarity=0.359 Sum_probs=224.0
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeE-EEEcC-CCCEEEEecCCCeEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILD-LHWTT-DGSQIISASPDKTLR 125 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~-~~~~~-~~~~l~s~~~dg~i~ 125 (347)
....+.||...|..+++.+. ..++++|.||++++|+-.++ ......+.+|.+-|.. +++.+ ++-.|++|+.|+++.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 34578899999999997654 47889999999999987433 2233456777777766 77775 455699999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEec
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+|.......+..+.+|...|.++...... .+++||.|.++++|-..+ +.... .|...|.++..-|.+ .+++|+.
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccC
Confidence 99999999999999999998776654443 489999999999997643 22233 466789999888876 8999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
|.+|++|.- ++...++.+|++.|+.+++-++ ..+++++.||.|++|++. +.++..+.+|. ..+.+++.
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-----ge~l~~~~ght----n~vYsis~ 227 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-----GEVLLEMHGHT----NFVYSISM 227 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-----Cceeeeeeccc----eEEEEEEe
Confidence 999999964 7788899999999999999875 458899999999999984 34555565553 56888888
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+++..+++++.|+++++|+.. ++.+.+.-...+|+++.+-+++. |++|++||.||||.
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 8889999999999999999876 67777764456899999988885 45899999999985
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=207.44 Aligned_cols=244 Identities=20% Similarity=0.367 Sum_probs=205.7
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
....+..|++.|+-+.||++|++||+++.|.+..+|.+.... ...++.+|...|..+.++|++. ++++++.|..++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchHhee
Confidence 345678999999999999999999999999999999876543 3667788999999999998875 567888888999
Q ss_pred EEeCCCCCceeecCCC--CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-CceeEEEECCCCCEEEEEc
Q 019006 169 LWDMRQRGAIQTFPDK--YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-DMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~t~~ 245 (347)
+||+.++.....+++. ..+.+.+|.||+..+++|+.|+.+..||+... .....++-. ..|.+++.++||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999888888765 78999999999999999999999999998643 344444432 4589999999999999999
Q ss_pred CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCc--cCeee
Q 019006 246 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT--GSVNE 323 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~v~~ 323 (347)
.|..|++++...... ...+.. ...+.+...|.||+++++.-.+..+++||++...++.++.||. ..|..
T Consensus 374 ~d~~i~l~~~e~~~d----r~lise-----~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 374 VDKKIRLYNREARVD----RGLISE-----EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred cccceeeechhhhhh----hccccc-----cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 999999999763211 112222 3468899999999999999999999999999999999999996 45788
Q ss_pred EEEcCCC-CEEEEecCCCcEEeec
Q 019006 324 SVFHATE-PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 324 ~~~~~~~-~~l~s~s~D~~i~i~~ 346 (347)
.+|...+ .++||||+|+.||||+
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEE
Confidence 8888766 8999999999999996
No 94
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.6e-27 Score=214.92 Aligned_cols=238 Identities=21% Similarity=0.306 Sum_probs=181.7
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCcee-------------eeeeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQI-------------KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
|.....++++..+++++.+.....|+...+..+ ..+.+|...|.++.+++.+..++++|+.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333444556556666666666666664433211 1356788899999999866678999999999999
Q ss_pred EeCCCCC-------ceeec-CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCE
Q 019006 170 WDMRQRG-------AIQTF-PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240 (347)
Q Consensus 170 wd~~~~~-------~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 240 (347)
||+..+. .+..+ .|...|.+++|+|++ +.|++++.|+.|++||+++++....+.+|...|.+++|+|++++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 9997643 23333 355789999999985 68999999999999999999988899999999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee----CCCeEEEEeCCCce-eeEEec
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS----SDRMVYIWDTTSRR-ILYKLP 315 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs----~dg~i~vwd~~~~~-~~~~~~ 315 (347)
|++++.|+.|++||++.. ..+..+..|.. .....+.|.+++..|++++ .|+.|++||+++.. .+....
T Consensus 183 Latgs~Dg~IrIwD~rsg----~~v~tl~~H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDG----TIVSSVEAHAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred EEEecCCCEEEEEECCCC----cEEEEEecCCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 999999999999999853 34555665542 2345677899888877654 47999999998654 333333
Q ss_pred CC-ccCeeeEEEcCCCCEEEEec-CCCcEEeecC
Q 019006 316 GH-TGSVNESVFHATEPVIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 316 ~h-~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~~ 347 (347)
.+ ...+....|++++.+|++++ .|+.|++||+
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 33 34566778999999999888 4999999985
No 95
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.3e-27 Score=214.96 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=178.0
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--------eeec-CCCCceE
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--------IQTF-PDKYQIT 188 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--------~~~~-~~~~~v~ 188 (347)
|+.++.+++|+......+..+..|...|.++++++....++++|+.|++|++||+..+.. +..+ .|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998777778888899999999999987677999999999999999975421 1222 3556899
Q ss_pred EEEEcCCCCeE-EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 189 AVSFSDASDKI-YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 189 ~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
+++|+|++..+ ++++.|+.|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||++.. ..+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i~t 204 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIASS 204 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEEEE
Confidence 99999998764 689999999999999998777775 5578999999999999999999999999999853 34556
Q ss_pred Eeccccccc-cceEEEEECCCCCEEEEeeCCC----eEEEEeCCC-ceeeEE--ecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 268 LEGHQHNFE-KNLLKCGWSPDGSKVTAGSSDR----MVYIWDTTS-RRILYK--LPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 268 ~~~~~~~~~-~~~~~~~~s~~g~~l~sgs~dg----~i~vwd~~~-~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+.+|..... ..++...|++++.+|++++.|+ .|+|||++. .+.+.. +..+.+.+.-....+++.++++|+.|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 677654321 2334456789999999987764 799999985 555554 33444555555556678899999999
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
++|++|++
T Consensus 285 ~tIr~~e~ 292 (568)
T PTZ00420 285 GNCRYYQH 292 (568)
T ss_pred CeEEEEEc
Confidence 99999985
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-29 Score=197.08 Aligned_cols=250 Identities=22% Similarity=0.358 Sum_probs=208.2
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
..+.++.||.++|+...++.+....|+++.|-+.++||..... .+. .-.|+.-|.+++|+.|.++|++|+.++.+|||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd-elh-sf~hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD-ELH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh-hhh-hhhhhheeeeEEecccchhhhccchHHHhhhh
Confidence 3577899999999999999999999999999999999975332 222 23588889999999999999999999999999
Q ss_pred ECCCCc-eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 128 DVETGK-QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 128 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|++..+ ....+.+|.+.|..+.+...+. .+++.+.|++||+||.+++..++++.....|+++.+++++.++.++ ..+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCc
Confidence 998654 3566788999998888766654 5677799999999999999999999999999999999998766554 456
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEE-eccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL-EGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s 285 (347)
.|.+||..+-..+..+... -.|.+.+++|+...+++|+.|..++.||....... ..+ .+| ..+|.++.|+
T Consensus 206 sV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi----~~~nkgh----~gpVhcVrFS 276 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI----GSYNKGH----FGPVHCVRFS 276 (334)
T ss_pred eeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCcee----eecccCC----CCceEEEEEC
Confidence 7999999888777776543 45899999999999999999999999998764332 222 333 4789999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
|||..-++||.||+|++|....++.
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999998766543
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=8.5e-28 Score=191.02 Aligned_cols=290 Identities=21% Similarity=0.317 Sum_probs=217.6
Q ss_pred EecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCC---------eeeE-----EEeCcccceeEEEEcC-CCCEE
Q 019006 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDC---------KNFM-----VLKGHKNAILDLHWTT-DGSQI 115 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~---------~~~~-----~~~~h~~~v~~~~~~~-~~~~l 115 (347)
+.+-|.+.|+++...+ .|+++++|+.||.|.+||+..-. +... .-.+|+..|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567999999999987 78999999999999999985321 0001 1246888999999998 56688
Q ss_pred EEecCCCeEEEEECCCCceeeeeeccCcceeEeecC--CCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEE
Q 019006 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPS--RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSF 192 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 192 (347)
.+++.|.++++||.++.+....|... +.|.+-+++ .....++++|..|-.|++.|+..+..-..+. |...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 89999999999999988776655432 233332222 2234588999999999999999998888775 4578999999
Q ss_pred cCCCCe-EEEEecCCcEEEEeCCCC-ceEEE--------------ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 193 SDASDK-IYTGGIDNDVKVWDLRKG-EVSMT--------------LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 193 ~~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+|..++ |++|+.||.|++||+|.. .+... -.+|.+.+++++|+.++.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 998875 568999999999999854 22222 23567789999999999999999999999999987
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
..+...+..-..- |.....-.+. +. +-+...++---.++.+.++++-++..+..+.+|-..|++.+|-|+-+...++
T Consensus 277 ~G~ntl~~~g~~~-~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 277 SGRNTLREFGPII-HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred cCccccccccccc-ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 6543322111110 0000000111 11 3333444444456899999999999999999999999999999999999999
Q ss_pred cCCCcEEee
Q 019006 337 SSDKQIYLG 345 (347)
Q Consensus 337 s~D~~i~i~ 345 (347)
+.|+.|+.|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-27 Score=191.72 Aligned_cols=262 Identities=23% Similarity=0.352 Sum_probs=206.9
Q ss_pred EEEeeCCCcEEEEeccCCC-----------eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 72 IASGSHDRDIFLWHVHGDC-----------KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+++|+....|.-+++.... .+...+..|..+|++++.+ +.++++||.|.+|+|||+....++..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 4556665555555543211 1244578899999999886 78999999999999999999999999999
Q ss_pred cCcceeEeecCCCCC-CEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce
Q 019006 141 HNSFVNSCCPSRRGP-PLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218 (347)
Q Consensus 141 ~~~~v~~~~~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (347)
|.+.++++.+.++.. ..|++|+.||.|.+|+...-..+..+. |..+|+.++++|.++..++.+.|+.+++||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999998876532 257899999999999998877777764 567899999999999999999999999999998887
Q ss_pred EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 219 SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 219 ~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.+.+.--+ .-+.+.|+|.|.+++.++.+ .|-+|.+.... ....+. ....+.++.|- ++..|++|.+|+
T Consensus 162 a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~----v~~~i~-----~~~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 162 AFVLNLKN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS----VFREIE-----NPKRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred ceeeccCC-cceeeEEcCCCCEEEEEecc-EEEEEecccHh----Hhhhhh-----ccccceeeeec-CCceEEEecCCc
Confidence 66554322 23459999999999888876 58899876421 111111 11234454443 578999999999
Q ss_pred eEEEEeCCCceeeEEecCCccCeeeEEE--cCCCCEEEEecCCCcEEeecC
Q 019006 299 MVYIWDTTSRRILYKLPGHTGSVNESVF--HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|.+||..+..+...+.+|+..|-++.+ .|+..+|+|+|+||.|+|||+
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 9999999999999999999999999884 455689999999999999996
No 99
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-27 Score=185.56 Aligned_cols=236 Identities=22% Similarity=0.326 Sum_probs=205.3
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
..+.||..+++.+.++.+|++|++|+.|.+..+|-..+|+.+.++.+|.+.|++|...... ..+++|+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence 3578999999999999999999999999999999988999999999999999988776554 578999999999999999
Q ss_pred CCCceeecCCCCceEEEEEcCCCCeEEEEec-----CCcEEEEeCC-------CCceEEEecCCCCceeEEEECCCCCEE
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGI-----DNDVKVWDLR-------KGEVSMTLQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~v~~~~~~~~l 241 (347)
+++.+..++....|..+.|++++++++..+. .+.|.++|++ ..++...+..+.+.++.+.|.|-+.+|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999999999999999999999998876654 3569999998 345577788888999999999999999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
++|..||.|..||.+... ..+...+.|. ..|..+.+++|..++++||.|.+.++||..+.+++.++.. ..+|
T Consensus 163 i~Ghe~G~is~~da~~g~---~~v~s~~~h~----~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~Pv 234 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK---ELVDSDEEHS----SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPV 234 (327)
T ss_pred EEecCCCcEEEEEcccCc---eeeechhhhc----cccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccc
Confidence 999999999999998532 2334444443 4788999999999999999999999999999999888764 5689
Q ss_pred eeEEEcCCCCEEEEecC
Q 019006 322 NESVFHATEPVIGSCSS 338 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~ 338 (347)
++.+++|....++-+|.
T Consensus 235 N~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGG 251 (327)
T ss_pred cceecccccceEEecCC
Confidence 99999999887776664
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=191.67 Aligned_cols=246 Identities=24% Similarity=0.414 Sum_probs=200.2
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC------------C------ceeeeeeccCcceeEeecCCCCC
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET------------G------KQIKKMAEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 155 (347)
..+..|+.++.+.+|++||.++++|+.|-.|+|.|++. + ..++++..|...|+.+.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45778999999999999999999999999999999861 1 2356777888899999998875
Q ss_pred CEEEEEcCCCceEEEeCCCCCc---eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe---cCCCCce
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGA---IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL---QGHQDMI 229 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i 229 (347)
.+|++|+.|++|++||+..... .+.+.....+.++.|+|.|.++++|..-..+++||+.+.++...- ..|++.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 5899999999999999875432 334556678999999999999999999999999999988765543 4688899
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+++.+++.++..+|++.||.|++||-- .++|+..+..... ...|.+..|..+|++|++.+.|..+++|.+.+++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~--gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHG--GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcC--CceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999999999999999999954 4677776654322 2468899999999999999999999999999999
Q ss_pred eeEEecCCc--c---CeeeEEEcCCCCEEEEecC-CCcEEeec
Q 019006 310 ILYKLPGHT--G---SVNESVFHATEPVIGSCSS-DKQIYLGE 346 (347)
Q Consensus 310 ~~~~~~~h~--~---~v~~~~~~~~~~~l~s~s~-D~~i~i~~ 346 (347)
.+.++.|-. + --+...|+..+.++..-.+ .+.++-||
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 998876541 2 2245567777776665554 34566665
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.1e-29 Score=201.80 Aligned_cols=237 Identities=21% Similarity=0.361 Sum_probs=202.5
Q ss_pred EEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 95 VLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
.+.||.+.|.+++=+|.. ..+++|+.||.|+|||+....+...+..|.+.|..++... ..+++++.|.+++.|-+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeecc
Confidence 468999999999999976 6799999999999999999999999999999999988765 457899999999999876
Q ss_pred CCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEE
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCI 252 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~ 252 (347)
. .++.++-.+..+..+.-+..+..+++++. .|.|||.....++..+..-.+.|.++.|+|... .|++++.|+.|.+
T Consensus 138 ~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 138 G-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred C-CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 5 46777777777888887777788888887 499999988888888887788899999999654 6677789999999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc-eeeEEecCCccCeeeEEEcCCCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR-RILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
||+|...+..+.+..+ .-..++|+|.+--+++|+.|..+|.||.+.. +.+..+.+|..+|.+|.|+|.|+
T Consensus 215 yD~R~~~Pl~KVi~~m---------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTM---------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred EecccCCccceeeeec---------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 9999776655444332 2446789997777889999999999999864 45678899999999999999999
Q ss_pred EEEEecCCCcEEeec
Q 019006 332 VIGSCSSDKQIYLGE 346 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~ 346 (347)
-++|||.|.+|+|+.
T Consensus 286 EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFP 300 (433)
T ss_pred hhccccccceEEEee
Confidence 999999999999985
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.3e-25 Score=193.86 Aligned_cols=270 Identities=13% Similarity=0.127 Sum_probs=198.4
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
+.++++++.|+.+++|++.+. +....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL-EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC-ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 357889999999999998543 3444555553 46789999999876 5677899999999998887666654433 345
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC-cEEEEeCCCCceEEEecCCC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN-DVKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 226 (347)
+.+++.+..+++++..++.+++||+++...+..++....+..++|+|++..+++++.++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 66777766566666778999999999877777766555678899999999999888765 577889988766554432 2
Q ss_pred CceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccc---cccceEEEEECCCCCEEEE-eeCCCeEE
Q 019006 227 DMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHN---FEKNLLKCGWSPDGSKVTA-GSSDRMVY 301 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~s-gs~dg~i~ 301 (347)
.....++|+|++++++.+ ..++.|.+||+...+ ....+..+... .......++|+|+++++++ .+.++.+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 345789999999988654 468999999997532 22222211100 0112346789999998655 34567899
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe-cCCCcEEeecC
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC-SSDKQIYLGEI 347 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~D~~i~i~~~ 347 (347)
+||..+++.+..+. +...+..++|+|+++.|+++ +.+++|++||+
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999888776553 44578999999999998876 56999999985
No 103
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=2e-27 Score=206.41 Aligned_cols=283 Identities=28% Similarity=0.481 Sum_probs=212.5
Q ss_pred EEEEECC---CCCeEEEeeCCCcEEEEeccCCC-----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 61 YTMKFNP---AGTVIASGSHDRDIFLWHVHGDC-----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 61 ~~v~~~~---~~~~l~s~~~d~~v~~w~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
++..|++ ...+||.+.+||.|.++|..... ..+.....|...|.++.|.|....|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 4466765 34689999999999999974321 123445689999999999997778999999999999999998
Q ss_pred ceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--ee-----------e-------c--------C
Q 019006 133 KQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--IQ-----------T-------F--------P 182 (347)
Q Consensus 133 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~-----------~-------~--------~ 182 (347)
+.+.. +.+|...+.+.|+.+.++..|++|+.||.|.|||++-... .. . . .
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 87765 8899999999999999999999999999999999864320 00 0 0 0
Q ss_pred CCCceEE---EEEcCCCCeEEEEec-CCcEEEEeCCCCceEEEe--------cCC---CCceeEEEECCCCCEEEEEcCC
Q 019006 183 DKYQITA---VSFSDASDKIYTGGI-DNDVKVWDLRKGEVSMTL--------QGH---QDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 183 ~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~i~~v~~~~~~~~l~t~~~d 247 (347)
+...+.+ +.+..|...|++++. |+.|+|||++........ ..| .-.+.++.....|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0112333 445567888998876 999999999976544322 222 1236677777788999998889
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee-eEEecCCccCeeeEEE
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI-LYKLPGHTGSVNESVF 326 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~ 326 (347)
+.|.+||++.... ..+..+.++.. ......-..+||+.+|++|+.|...++|.+.+.+. ...+.||.-+|..+.|
T Consensus 293 ~sIy~ynm~s~s~--sP~~~~sg~~~--~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI--SPVAEFSGKLN--SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW 368 (720)
T ss_pred CcEEEEeccccCc--CchhhccCccc--ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence 9999999986432 22333333221 11223334689999999999999999999887553 4467899999999999
Q ss_pred cCCC-CEEEEecCCCcEEeecC
Q 019006 327 HATE-PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~-~~l~s~s~D~~i~i~~~ 347 (347)
.|.. .-++||+.|..++||++
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccccCCCceeeccCcceEEEec
Confidence 8875 46778899999999986
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=213.02 Aligned_cols=278 Identities=23% Similarity=0.369 Sum_probs=214.5
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee--e-EEEeCc---ccceeEEEEcC-CCCEEEEecCCCeEEEEECCC
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN--F-MVLKGH---KNAILDLHWTT-DGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~--~-~~~~~h---~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 131 (347)
...+|+.+++-..++.++. ..+.+|........ . ...+.. ...+..+.|.. +.++|+|++.+|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3456677788888877776 35667766432211 1 111111 12345677875 567899999999999999987
Q ss_pred ---CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCC-CCeEEEEecCC
Q 019006 132 ---GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDA-SDKIYTGGIDN 206 (347)
Q Consensus 132 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-~~~l~~~~~dg 206 (347)
.+++..|..|...+..+.+++..+.++++|+.||+|++||++..+...++... ..|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 45566788899999999999999999999999999999999988877776554 46899999986 55788889999
Q ss_pred cEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.+.+||+|.. ++...+.+|.++|.++.|+|++.+|||||.|+.|+|||+...+. ....++.. -.++.++.|-
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~~~tInT-----iapv~rVkWR 272 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KPKHTINT-----IAPVGRVKWR 272 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cceeEEee-----cceeeeeeec
Confidence 9999999865 45667889999999999999999999999999999999985332 11222221 2468899999
Q ss_pred CCCCE-EEEee--CCCeEEEEeCCCceee-EEecCCccCeeeEEEcC-CCCEEEEecCCCcEEe
Q 019006 286 PDGSK-VTAGS--SDRMVYIWDTTSRRIL-YKLPGHTGSVNESVFHA-TEPVIGSCSSDKQIYL 344 (347)
Q Consensus 286 ~~g~~-l~sgs--~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~i 344 (347)
|+.++ ||+++ .|-.|+|||++..-+- ..+..|...+..++|-. +...+.+++.||+|..
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 98765 56655 4778999999875443 46889999999999976 4568889999998753
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=7.7e-27 Score=208.44 Aligned_cols=290 Identities=16% Similarity=0.304 Sum_probs=221.6
Q ss_pred CeeEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.++.++.-.+.|++++|.-|| .+||+|+..|.+.+||+++..........|.+.|....|.+....+++++.|..+++|
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 345565446999999999998 4788888899999999976544444456899999999999999999999999999998
Q ss_pred ECCCC----ceeeeeeccCcceeEeecCCCCCCE----------------------------------------------
Q 019006 128 DVETG----KQIKKMAEHNSFVNSCCPSRRGPPL---------------------------------------------- 157 (347)
Q Consensus 128 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~---------------------------------------------- 157 (347)
=.+++ +.++.-.+|..+...+.+.......
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 55432 2222222333332222222222222
Q ss_pred -------------------EEEEcCCCceEEEeCCCCCc-eeecCC------CCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 158 -------------------VVSGSDDGTAKLWDMRQRGA-IQTFPD------KYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 158 -------------------~~s~~~d~~i~iwd~~~~~~-~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
++..-.+..++.|+.++... ...+.+ ...+++++.+++|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 23333344556666654433 122222 2468899999999999999999999999
Q ss_pred eCCCCceEEEe---cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 212 DLRKGEVSMTL---QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 212 d~~~~~~~~~~---~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
++++|-...++ +.|...|++++....++.+++++.+|.+++||..... ....++ ....+..+.++...
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----l~~~l~-----l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----LKKSLR-----LGSSITGIVYHRVS 546 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----eeeeec-----cCCCcceeeeeehh
Confidence 99999887777 5899999999999999999999999999999987432 222222 22356667778888
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..++.+-.|-.|+++|..+.+.+..+.||++.|++++|||++++|++++.|++|++||+
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999996
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.3e-27 Score=206.96 Aligned_cols=288 Identities=21% Similarity=0.290 Sum_probs=224.5
Q ss_pred CccccEEEEEECCC-----------CCeEEEeeCCCcEEEEeccCCC--ee----e-----------------E------
Q 019006 55 GHQSAVYTMKFNPA-----------GTVIASGSHDRDIFLWHVHGDC--KN----F-----------------M------ 94 (347)
Q Consensus 55 ~h~~~V~~v~~~~~-----------~~~l~s~~~d~~v~~w~~~~~~--~~----~-----------------~------ 94 (347)
-|..-|+.+.--|- ..-+.|++.|++|++|++..-. .. + +
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 46666666654441 1348899999999999986410 00 0 0
Q ss_pred -------EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC--CCCEEEEEcCCC
Q 019006 95 -------VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR--GPPLVVSGSDDG 165 (347)
Q Consensus 95 -------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~d~ 165 (347)
..-.....+.+++.+|+|++|++|..-|+++||++..-+....+..|...|.++.++.. ..++|++++.|.
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR 526 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR 526 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc
Confidence 00112346899999999999999999999999999988888888899998887766543 346899999999
Q ss_pred ceEEEeCCCC-CceeecC-CCCceEEEEEcCCC--CeEEEEecCCcEEEEeCCCCceEEEecCC-----CCceeEEEECC
Q 019006 166 TAKLWDMRQR-GAIQTFP-DKYQITAVSFSDAS--DKIYTGGIDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSP 236 (347)
Q Consensus 166 ~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~ 236 (347)
-|.++|+... .+++++. |...|+++.|...+ ..+++++.|..|.+--.+.......+..| +..+..|+..|
T Consensus 527 lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 527 LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC
Confidence 9999998754 3445554 45689999998776 67899999987765332211111111111 24688999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 237 DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 237 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
+.+++++++.|+.|+|||+... +..+.+++.. ..++....+...|.|-|||+...|+++.++|.-+++++.++.|
T Consensus 607 ~~k~v~t~cQDrnirif~i~sg----Kq~k~FKgs~-~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESG----KQVKSFKGSR-DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred CcceEEEEecccceEEEecccc----ceeeeecccc-cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 9999999999999999999753 4455665532 3356788899999999999999999999999999999999999
Q ss_pred CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 317 HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 317 h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|+..|+.+.|.+|.+.|++++.||.|.||++
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEEC
Confidence 9999999999999999999999999999985
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=192.69 Aligned_cols=241 Identities=20% Similarity=0.380 Sum_probs=198.7
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee--------eeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--------MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
+.+..+.+..|+|||++|++|+.||.|.+||..+|+..+. +..+...|.+++++.+. .++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEE
Confidence 4456678889999999999999999999999999876443 33456677777887654 68999999999999
Q ss_pred EeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 170 WDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 170 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
|.++++.+++.|. |...|+|+.|+.++..+++++.|.++++.-+++|++..++.+|.+.|+...|.++|.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999998885 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCCceeeEEecC---CccCeee
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVNE 323 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~~ 323 (347)
|+|++|+... ..|+..++.... +..+.++-.-|. -..++++...++|++.++. |+.+..+.. -.+.-.+
T Consensus 370 gtvkvW~~Kt----teC~~Tfk~~~~--d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 370 GTVKVWHGKT----TECLSTFKPLGT--DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred ccEEEecCcc----hhhhhhccCCCC--cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence 9999999874 345555543332 335666665564 4678888888899999875 555555532 2345667
Q ss_pred EEEcCCCCEEEEecCCCcEEeec
Q 019006 324 SVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 324 ~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+.+|.+.++.+.++|+.+|.|.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEE
Confidence 78999999999999999999874
No 108
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-26 Score=200.37 Aligned_cols=285 Identities=20% Similarity=0.362 Sum_probs=212.1
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCE-EEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ-IISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~ 129 (347)
..+.||++.|.+|+..|.|.+||+|+.||+|++|.+.+. +.+..+. ..+.|.+++|+|.++. ++.++.+..+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 468899999999999999999999999999999999643 3333222 2347999999997653 333333333444443
Q ss_pred CCCce-------------------------------------eeeeeccCcceeEeecCCCCCCEEEEEcC---CCceEE
Q 019006 130 ETGKQ-------------------------------------IKKMAEHNSFVNSCCPSRRGPPLVVSGSD---DGTAKL 169 (347)
Q Consensus 130 ~~~~~-------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~---d~~i~i 169 (347)
.-|.. ++....|...+..+.++..+.+ |++... ...|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEE
Confidence 22211 1122234555666777776654 444332 356778
Q ss_pred EeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 170 WDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 170 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
.++..+.....| ..++.+.++.|+|...+|++++.. .|++||+.....+..+......|.+|+.+|.|..|+.++.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 888766555445 345679999999999999988875 699999988777776666667799999999999999999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC------CCc---eeeEEecCCcc
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT------TSR---RILYKLPGHTG 319 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~------~~~---~~~~~~~~h~~ 319 (347)
.++.+|+.-. .+..+.++.| ...+.+++|++.-.++++|+.||.+.||.. ... ..+.+++||..
T Consensus 630 k~~WfDldls---skPyk~lr~H----~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 630 KMCWFDLDLS---SKPYKTLRLH----EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred eeEEEEcccC---cchhHHhhhh----hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999998742 2334445444 467899999999999999999999999842 111 24568999976
Q ss_pred C----eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 320 S----VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 320 ~----v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
. |.++.|||..++|.|++.||+|++|.
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEeeC
Confidence 6 99999999999999999999999984
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=5.2e-27 Score=198.82 Aligned_cols=279 Identities=19% Similarity=0.318 Sum_probs=221.3
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--eeeEEEe--CcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--KNFMVLK--GHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.|..-|.++.++...+.+.||+. |.|++||+.... .+...+. .....|.++..+|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68899999999999999999887 789999996432 2222222 234578999999999999999999999999998
Q ss_pred CCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCc
Q 019006 131 TGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 131 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
.....-+ +.........++.+++ .++.+++..||.|.|||+++...+..++. ...+.|+.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7543221 2222223334445554 46788899999999999999988888865 467999999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
||-||++.+....... ..+.|.++..+|++.+|+.|-.++.+.+-...... .+.-|. .+..|.++.|.+.
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------kyqlhl--heScVLSlKFa~c 644 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------KYQLHL--HESCVLSLKFAYC 644 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc-------ceeecc--cccEEEEEEeccc
Confidence 9999999886544432 24679999999999999999999988887665311 122222 3567999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+++++.+.|+.+..|....|.-+++.+. ..+|.+..++.++++|+|+|.|+...+.+
T Consensus 645 GkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred CceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEE
Confidence 99999999999999999999988887764 45899999999999999999998776654
No 110
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=191.90 Aligned_cols=293 Identities=21% Similarity=0.362 Sum_probs=212.5
Q ss_pred EecCccccEEEEEECCCC--CeEEEeeCCCcEEEEeccC---CCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEE
Q 019006 52 LLTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHG---DCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~--~~l~s~~~d~~v~~w~~~~---~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~ 125 (347)
...-|.+.|++++|+|.. .++|+|+.-|.|-+||+.+ ....+..+..|..+|.+|.|+| +..++++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 345578899999999964 5899999999999999942 2233566789999999999999 456899999999999
Q ss_pred EEECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeec-CCCCceEEEEEcCCCC-eEE
Q 019006 126 AWDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTF-PDKYQITAVSFSDASD-KIY 200 (347)
Q Consensus 126 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~-~l~ 200 (347)
+-|++.... +............+.++.... .++.+..=|...+||++..+. ...+ -++..|+.++++|... +++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999987543 222222333344444444444 455566666999999997664 2222 2445899999999866 678
Q ss_pred EEecCCcEEEEeCCCCc--e--EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc--
Q 019006 201 TGGIDNDVKVWDLRKGE--V--SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-- 274 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~--~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-- 274 (347)
+++.|++.+|||+|.-. . ......|...|.+..|+|++..|+|.+.|..|+|||..-..........+. |...
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~ 418 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG 418 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc
Confidence 99999999999998532 2 244556889999999999988899999999999999842111111111221 1111
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-Cee-eEEEcCCCC-EEEEecCCCcEEeec
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-SVN-ESVFHATEP-VIGSCSSDKQIYLGE 346 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~-~~~~~~~~~-~l~s~s~D~~i~i~~ 346 (347)
-.-......|.|+..++++|-.-..|-|||...++.+..+..... .|. -.+|||-+. ++|-++.-|.|+||.
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 112355678999999999999999999999999997777543322 343 457999998 555555789999984
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=191.97 Aligned_cols=285 Identities=17% Similarity=0.292 Sum_probs=224.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeee-EEEeCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCce
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF-MVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.+.|++|.|+|..++|.+||.|+++++|.+++...+. ..+.--.-+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999998765442 23333456899999999998 899999999999999988764
Q ss_pred ee--eeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 135 IK--KMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 135 ~~--~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
.. ...++. ..+..+..++.+ ++++..+..|.|.+....++..+..+.-...+..+.|+.+++.+++.+.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 32 222222 233344445554 47888889999999999999999999888999999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCce--eEEEECCCCCEEEEEcCCCcEEEEeCCCCC--CcCceeEEEeccccccccceEEEEECCC
Q 019006 212 DLRKGEVSMTLQGHQDMI--TGMSLSPDGSYLLTNGMDCKLCIWDMRPYA--PQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i--~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
|++...+...+... +.| ++++.++++.|||+|+..|.|.|||...-- ...++++.+ .+....|.++.|+||
T Consensus 372 nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----DNLTTAITSLQFNHD 446 (514)
T ss_pred ecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh----hhhheeeeeeeeCcc
Confidence 99999888877632 233 567778999999999999999999965311 111222222 123457889999999
Q ss_pred CCEEEEeeC--CCeEEEEeCCCceeeEEecCCc---cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 288 GSKVTAGSS--DRMVYIWDTTSRRILYKLPGHT---GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~--dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++.||-+|. +..+++-.+.+......++... +.|++++|+|.+.+||-|-.+|.|.+|+|
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999987774 6779999888877666565443 46899999999999999999999999986
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=190.94 Aligned_cols=248 Identities=23% Similarity=0.370 Sum_probs=202.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+|.||+..|+.+.|+|+...+++++.|..|++|..... ........|..+|+.+..+|.|+||++++.||+....|+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 4568999999999999999999999999999999998533 344567889999999999999999999999999999999
Q ss_pred CCCceeeeeeccC--cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCC
Q 019006 130 ETGKQIKKMAEHN--SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 130 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.+++.+....... -.+.+..++|++ .+|.+|+.|+.+++||+..+.....|+. ...|..+.|+.+|.+++++..|+
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 9998776554422 235567777765 6899999999999999999888888865 57899999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCC-CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.|++||+|..+...+++... ..+.+++|.+.|.+|+.+|.|=.|++++-. ..+.++...+..|. +....+.|.
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~--~k~W~~~~~~~~~s----g~st~v~Fg 485 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK--TKSWTEIKELADHS----GLSTGVRFG 485 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc--cccceeeehhhhcc----cccceeeec
Confidence 99999999877666655432 358999999999999999887555555522 23344444444332 456778899
Q ss_pred CCCCEEEEeeCCCeEEEEeC
Q 019006 286 PDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~ 305 (347)
...++++++|.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 99999999999999888753
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=183.05 Aligned_cols=240 Identities=20% Similarity=0.287 Sum_probs=191.9
Q ss_pred eCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC-Ccee-eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 97 KGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET-GKQI-KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 97 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
....+.|.+|+||| ...+++.+|.|++||+|+++. +..+ +....|.+.+.+++++.++ ..+++|+.|+.+++||+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEcc
Confidence 34567899999999 455666899999999999986 3332 3455688899999998877 578899999999999999
Q ss_pred CCCceeecCCCCceEEEEEcCCCC--eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASD--KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
+++..+.-.|...|..+.|-+... .|++|+.|.+|+.||.|....+.+++- .+.+.++..- ...++.+..++.|.
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEE
Confidence 998888878888999999877655 889999999999999999888887764 3556666543 45777888899999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc--eeeEEecCCcc---------C
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR--RILYKLPGHTG---------S 320 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~---------~ 320 (347)
+|+++... ..++.+....+-.+.+++..+|....+.|+-+|.+-+..+..+ ..-+.++.|.. +
T Consensus 180 vynL~n~~------te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 180 VYNLENPP------TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred EEEcCCCc------chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 99996432 1222233334456788888888888899999999999988775 44456777762 5
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 321 VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|++++|||.-..|+|+|.||++..||
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ecceEeecccceEEEecCCceEEEec
Confidence 89999999999999999999999998
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.2e-26 Score=180.71 Aligned_cols=263 Identities=21% Similarity=0.334 Sum_probs=190.6
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC---CeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---CKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAW 127 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw 127 (347)
-.+|.+-|+++.|.+-|+.+|+|+.|++|+||+.... .......+.|.+.|..+.|.+ -|+.+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3589999999999999999999999999999996433 333456789999999999975 48899999999999999
Q ss_pred ECCCC---------ceeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCC------ceeecC--------C
Q 019006 128 DVETG---------KQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRG------AIQTFP--------D 183 (347)
Q Consensus 128 d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~------~~~~~~--------~ 183 (347)
.-... ....++......|.+++|.|.. +-.+++++.||++|||+...-. ....+. +
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75211 1233455566778888887653 3468899999999999864322 222222 3
Q ss_pred CCceEEEEEcCC---CCeEEEEecC-----CcEEEEeCCCC----ceEEEecCCCCceeEEEECCC-C---CEEEEEcCC
Q 019006 184 KYQITAVSFSDA---SDKIYTGGID-----NDVKVWDLRKG----EVSMTLQGHQDMITGMSLSPD-G---SYLLTNGMD 247 (347)
Q Consensus 184 ~~~v~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~v~~~~~-~---~~l~t~~~d 247 (347)
.....|+.|+|. .+.|++|+.+ +.++||....+ ..+.++.+|.++|++++|.|+ | ..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 456788888864 4567777765 47888865433 345577899999999999996 2 478999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
| |+||.++..... +. ...+. .|+. +.+ -.-+.+..+.+|.+.|+.+.|+
T Consensus 249 g-v~I~~v~~~~s~------i~------~ee~~----~~~~-------------~~~-l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 249 G-VRIFKVKVARSA------IE------EEEVL----APDL-------------MTD-LPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred c-EEEEEEeeccch------hh------hhccc----CCCC-------------ccc-cceEEeeeccCCCCceEEEEEe
Confidence 9 999998742110 00 00000 1111 001 1223456788899999999999
Q ss_pred CCCCEEEEecCCCcEEeec
Q 019006 328 ATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~i~~ 346 (347)
-.|..|+|+|.||.|++|+
T Consensus 298 mtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeeeEEeecCCCceeeehh
Confidence 9999999999999999986
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.3e-27 Score=203.82 Aligned_cols=234 Identities=24% Similarity=0.457 Sum_probs=192.4
Q ss_pred EEEEc-CCCCEEEEecCCCeEEEEECCCCc------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-
Q 019006 105 DLHWT-TDGSQIISASPDKTLRAWDVETGK------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG- 176 (347)
Q Consensus 105 ~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~- 176 (347)
.+..+ |.+++|+|||.||.|++|++.... ....+..|...|+++.....+ +.++++|.|-+|++|+...+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcc
Confidence 34444 467789999999999999986432 255677888888887665544 468999999999999988663
Q ss_pred -ceeec-CCCCceEEEEE-cCCCCeEEEEecCCcEEEEeCCCCc--eEE--------Eec-CCCCceeEEEECCCCCEEE
Q 019006 177 -AIQTF-PDKYQITAVSF-SDASDKIYTGGIDNDVKVWDLRKGE--VSM--------TLQ-GHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 177 -~~~~~-~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~--~~~--------~~~-~~~~~i~~v~~~~~~~~l~ 242 (347)
+..++ .|..-|.|+++ .++...+++|+-|+.|.+||+.++. ... .+. ++...|.+++.++.|..++
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 44444 35567999999 7788899999999999999998762 222 223 7888999999999999999
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN 322 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~ 322 (347)
+||.++.+++||.+..+ -+-.+++|. ..|..+..++||..++++|+||+|++||+...+++.++..|...|+
T Consensus 188 sGgtek~lr~wDprt~~----kimkLrGHT----dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCK----KIMKLRGHT----DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred ecCcccceEEecccccc----ceeeeeccc----cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 99999999999988532 234456775 4577888899999999999999999999999999999999999999
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.-+|.-..+.+|+.||.|+.-||
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEeccc
Confidence 9999999999999999999987664
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.1e-26 Score=181.16 Aligned_cols=237 Identities=20% Similarity=0.298 Sum_probs=193.7
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~ 178 (347)
..+.|.+|.|+|.+..|+.++.||.+++||+........+ .|...+.+|++.+. ..+++|+-||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcce
Confidence 4678999999999999999999999999999877544333 57788889998764 46889999999999999998888
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
+...|...+.|+.+.+..+.+++|+.|++|++||.+.......+.. ...|.++... ++.|+.|+.|..+.+||+|..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 8888888999999999999999999999999999997544444443 3478887764 788999999999999999964
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCcc---------CeeeEE
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTG---------SVNESV 325 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~---------~v~~~~ 325 (347)
.... ......++-.+.++++-|.+.=.+++|-||.|.+=.++.. +..+.++.|.. +|++++
T Consensus 166 ~~~~------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 166 DEPF------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cchh------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 3321 1112334456888899999888999999999888665554 44567777753 699999
Q ss_pred EcCCCCEEEEecCCCcEEeecC
Q 019006 326 FHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 326 ~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|||--..+||||.||.|.+||+
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eccccceEEecCCCceEEEccC
Confidence 9999999999999999999985
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.2e-26 Score=203.65 Aligned_cols=248 Identities=17% Similarity=0.325 Sum_probs=199.7
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
-+|+...+.++|.|+|+.|++++.||.|++|+.... +.-..+..+...+.+++... ..|++|+.+++|..|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence 368888999999999999999999999999987665 33333333666666665443 37899999999999998766
Q ss_pred Cceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 176 GAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 176 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
..-..+ +...++.+++++.+|.+++.|+.|-.|++-++........+.+|..+|.++.|+|.+++||+.+-||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 543222 2345688999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC--CccCeeeEEEcCCCCE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG--HTGSVNESVFHATEPV 332 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~ 332 (347)
+.+...........+.........+..++|+|+|..|+.-..|+.|++|+....+..+.+.. |+..+..+.|+|.|++
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98643322211111111111135678899999999999999999999999999998887754 3445899999999999
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
||+++.||.|.|||.
T Consensus 247 iAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 247 IAASTLDGQILVWNV 261 (933)
T ss_pred EeeeccCCcEEEEec
Confidence 999999999999984
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=179.88 Aligned_cols=245 Identities=19% Similarity=0.300 Sum_probs=193.0
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC---ceeeeeeccCcceeEeecC-CCCCCEEEEEcCCCceEEEe
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG---KQIKKMAEHNSFVNSCCPS-RRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~d~~i~iwd 171 (347)
...|.+.|.++...-.|++|+||+.|++|+|+.+... +.+.++.+|.+++..+.+. |.-+.+|++++.||.+.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4578899988888878999999999999999998764 4577889999999988764 44567999999999999999
Q ss_pred CCCCCceeec---CCCCceEEEEEcCCC--CeEEEEecCCcEEEEeCCCC---ceEEEecCCCCceeEEEECCC---C--
Q 019006 172 MRQRGAIQTF---PDKYQITAVSFSDAS--DKIYTGGIDNDVKVWDLRKG---EVSMTLQGHQDMITGMSLSPD---G-- 238 (347)
Q Consensus 172 ~~~~~~~~~~---~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~v~~~~~---~-- 238 (347)
-.++.-.+.+ .|...+++++|.|.+ -.|++++.||.|.+.+.+.. ......+.|.--|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 8776433333 356789999998874 47889999999999988754 233445678888999999986 4
Q ss_pred ---------CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC----CEEEEeeCCCeEEEEeC
Q 019006 239 ---------SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG----SKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 239 ---------~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g----~~l~sgs~dg~i~vwd~ 305 (347)
+.|++||.|+.|+||+.... ....-..+++| .+.+..++|.|.- .+||++|.||.+.||..
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H----~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGH----KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhc----chhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 56999999999999998753 22222335555 4678889999864 57999999999999976
Q ss_pred CCcee---eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 306 TSRRI---LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 306 ~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.... ..-+......++.+.|+..+.+|+-++.|..|++|+
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 52211 112333456799999999999999999999999995
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-25 Score=196.27 Aligned_cols=241 Identities=23% Similarity=0.399 Sum_probs=200.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.++..|+++.|+++|..||+|..+|.|.|||.. +.+....+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 347899999999999999999999999999985 3445556677 99999999998 6689999999999999998776
Q ss_pred eeee-eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCC-eEEEE--ecCCcE
Q 019006 134 QIKK-MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASD-KIYTG--GIDNDV 208 (347)
Q Consensus 134 ~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~--~~dg~i 208 (347)
.... +..|...|..+.+.+++ .++++|+.|+.+.|||.....+...+ .|...|.+++|+|-.. .||+| +.|+.|
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 5444 77889999988888776 57999999999999999665555544 6778999999999754 66765 489999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
++||..++..+..+.. ...|.+|.|++..+.|+++. .++.|.||+... ...+..+.+|. ..|..++++|
T Consensus 371 ~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----~~~~~~l~gH~----~RVl~la~SP 441 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----MKLVAELLGHT----SRVLYLALSP 441 (484)
T ss_pred EEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc----cceeeeecCCc----ceeEEEEECC
Confidence 9999999988777654 46799999999987777654 467899999764 34455666664 5699999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCc
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
||..+++|+.|.++++|++-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 9999999999999999998764
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=182.78 Aligned_cols=251 Identities=26% Similarity=0.490 Sum_probs=199.6
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEec------cCC---------------------------------C
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV------HGD---------------------------------C 90 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~------~~~---------------------------------~ 90 (347)
+..+.||.+.|++++|++.+.++++++.|++.+||.. ..+ .
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 3468899999999999999999999999999999972 110 0
Q ss_pred eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
.++..+.+|...|.+..|...|+.+++++.|.+..+||++++..+..+.+|.....-|+.++.. .++++.+.|.+.++|
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEec
Confidence 2345788999999999999999999999999999999999999999999999998888887764 689999999999999
Q ss_pred eCCCCC-ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 171 DMRQRG-AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 171 d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
|++..- .+..|. |...|+++.|..+ ..+++|+.|.+|++||+++... +.++. -.++++.++.+..+..++.-..+
T Consensus 342 DFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 342 DFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred cchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCC
Confidence 998432 233444 4567999999864 5789999999999999987653 34444 35678999999877888888888
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC--CEEEEeeCCCeEEEEeCCC
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG--SKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~l~sgs~dg~i~vwd~~~ 307 (347)
..|++||+.......-+-...++| ...+.+++|..+. .-|++++.|..+.-|....
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgH----rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGH----RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ceEEEEecCCCccccCCccccccc----ceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 899999997533222121223333 4578899997654 4578889999999997653
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1e-25 Score=197.65 Aligned_cols=290 Identities=21% Similarity=0.413 Sum_probs=216.7
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-----------------------------------------
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC----------------------------------------- 90 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----------------------------------------- 90 (347)
++.||++-|+++.|+|.+..|.+++.|.++.+|....+.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 356999999999999999999999999999999764331
Q ss_pred ----------eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeeccCcceeEeecCCCCCC
Q 019006 91 ----------KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 91 ----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.......||.+.|.+++|+|.|++|+++|.|.+-|++---..+ .+..-+.|+-...++.+.+. +.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-Cc
Confidence 0011245899999999999999999999999999998543111 11122335545555555543 45
Q ss_pred EEEEEcCCCceEEEeCCC----------C---------------------------------Cc----e-----------
Q 019006 157 LVVSGSDDGTAKLWDMRQ----------R---------------------------------GA----I----------- 178 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~----------~---------------------------------~~----~----------- 178 (347)
.+++|..++.+|+|+... + .. .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 688888888888887410 0 00 0
Q ss_pred -------------------eecCCCCceEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCceEEEecCCCCceeEEEE
Q 019006 179 -------------------QTFPDKYQITAVSFSDASDKIYTGGIDN-----DVKVWDLRKGEVSMTLQGHQDMITGMSL 234 (347)
Q Consensus 179 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 234 (347)
+.+.|.++|.+++.+|+++.++++.... .|++|+..+-.....+++|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 0112445699999999999999887543 4999999888888889999999999999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc--eeeE
Q 019006 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR--RILY 312 (347)
Q Consensus 235 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~--~~~~ 312 (347)
+||+++|++.+.|+++.+|..........-....+.| ...|+.|.|+|++.+++|+|.|++|++|..... +.+.
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H----tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH----TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhcccccc----ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh
Confidence 9999999999999999999875322111112223333 467999999999999999999999999987766 4443
Q ss_pred E--ecCCccCeeeEEEcCCCC-----EEEEecCCCcEEeec
Q 019006 313 K--LPGHTGSVNESVFHATEP-----VIGSCSSDKQIYLGE 346 (347)
Q Consensus 313 ~--~~~h~~~v~~~~~~~~~~-----~l~s~s~D~~i~i~~ 346 (347)
+ ...++.+|+.++|.|-.. .++-|-+.|.|++|.
T Consensus 657 ~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 657 RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 3 346788999999988643 445555789999986
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=188.51 Aligned_cols=234 Identities=21% Similarity=0.401 Sum_probs=192.3
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.+|...+.+++.++||++||+|+.|..|.||+.. .......+++|.+.|.+++|-.....|++++.|+.+++|+++...
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCc-ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 3899999999999999999999999999999985 455666789999999999999888899999999999999999888
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
.+.++.+|...|..+...... ..+..|+.|.++++|++..........+...+-|++|-. ...|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence 888999999988877655443 355667799999999997665555556677888888874 578999999999999999
Q ss_pred CCCceEEEec-CC-----------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 214 RKGEVSMTLQ-GH-----------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 214 ~~~~~~~~~~-~~-----------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
.+.+++++.+ +| +..|++++..|..+.+++|+.+|.|++|-+.+...+...+..+ .+.+.|.+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-----s~~GfVNs 430 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-----SLVGFVNS 430 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec-----ccccEEEE
Confidence 8877766542 22 2278999999999999999999999999987643333333332 24567999
Q ss_pred EEECCCCCEEEEee
Q 019006 282 CGWSPDGSKVTAGS 295 (347)
Q Consensus 282 ~~~s~~g~~l~sgs 295 (347)
++|+++|++|++|-
T Consensus 431 l~f~~sgk~ivagi 444 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGI 444 (479)
T ss_pred EEEccCCCEEEEec
Confidence 99999999777663
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=9.1e-26 Score=197.97 Aligned_cols=238 Identities=22% Similarity=0.384 Sum_probs=198.2
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee--eeeccCcceeE-eecCCCCCCEEEEEcCCCceEE
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK--KMAEHNSFVNS-CCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~~~s~~~d~~i~i 169 (347)
-..+.+|+..|..++..++ ..++++|.||++++|+-..++.+. .+..+.+++.. .++.+.+...+++|+.|.+|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 4568899999988887654 479999999999999976554433 35556666665 6665555556899999999999
Q ss_pred EeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 170 WDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 170 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
|...+..+...+. |+..|+++....++. +++|+.|.++++|- .+++...+++|+..|++++.-|++ .++||+.|.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 9999988888775 567899998877665 99999999999994 567788899999999999998877 889999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
+|++|.- .++++.+.+|. +.|..+++-+++ .+++++.||.|++|++ +++.+.++.||+..|.++....
T Consensus 162 tIklWk~------~~~l~tf~gHt----D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 162 TIKLWKG------GTLLKTFSGHT----DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eeeeccC------Cchhhhhccch----hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999973 45677788774 567888887765 4668999999999998 7888889999999999999888
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
++..++|+|+|++++||+.
T Consensus 230 ~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred CCCeEEEecCCceEEEeec
Confidence 8899999999999999973
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=196.29 Aligned_cols=272 Identities=17% Similarity=0.331 Sum_probs=207.7
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.+|...-+.|.|.|+|.+|.+++.||.|++|+..........+..+...|.+++-. +.++++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 47999999999999999999999999999998754422223333366677776654 5599999999999999987765
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEe
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWD 212 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 212 (347)
.-..+..-.-.+..++++.. +.++++|+.|-.|++-+.........+ .++.+|.++.|+|.+++|++.+.||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 42222222334555666555 468899999999999998866655544 5678999999999999999999999999999
Q ss_pred CCCCceEEEecCC--------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 213 LRKGEVSMTLQGH--------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 213 ~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+.++.+..++.+- ...+..++|+|++..++..+.|+.|++|+...++.+. .++.... ...+..+.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f----~Lr~~~~--ss~~~~~~w 240 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF----KLRDKLS--SSKFSDLQW 240 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe----eeccccc--ccceEEEEE
Confidence 9988776665431 2345678999999999999999999999987665432 2332221 234889999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
+|.|.|||+++.||.|.|||.++-+. ......|.+++|.|+..-+-....
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEee
Confidence 99999999999999999999987222 112357999999999876544333
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.5e-27 Score=205.95 Aligned_cols=255 Identities=24% Similarity=0.435 Sum_probs=216.8
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
..+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+.+|.+.....+..+..|...|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 3445555556667777653 245688888888776678899999999999999988776677788999999998
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (347)
.+.... .++++|+.+|+|++||+...+.++++. +...+.++.|+|-+.+++.|+.|..+++||.+...+.+.+.+|..
T Consensus 77 ~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 887664 588999999999999999888877765 456889999999999999999999999999998889999999999
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.+..+.|+|+|++++.++.|.++++||... +.....++.| ...+..+.|+|..-++++||.|+.+++||+++
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a----gk~~~ef~~~----e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTA----GKLSKEFKSH----EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccc----cccccccccc----cccccccccCchhhhhccCCCCceeeeeccce
Confidence 999999999999999999999999999873 4445555555 35677888999999999999999999999999
Q ss_pred ceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 308 RRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
-+.+.........|.+++|+|++..+.++..+
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99998888878899999999999988887654
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-23 Score=184.01 Aligned_cols=280 Identities=16% Similarity=0.286 Sum_probs=223.8
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.--.++|.+|+|+.+.+.||.+-.||.|.+|++...+-....+.++. ..|.+++|+ ++..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 3333457899999999999999999999999999976655555666665 469999999 45679999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee--cC-CCCceEEEEEcCCCCeEEEEecCCc
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT--FP-DKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
+++....+....+.+++++.++.+ ..++.|+.||.+..++...+..... +. .+.++.++.|+|++..++.|+.||.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 999999888888999999988876 4677788999888888776665432 22 3578999999999999999999999
Q ss_pred EEEEeCCCCceEEEec-------C-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 208 VKVWDLRKGEVSMTLQ-------G-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~-------~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
|++||..++...+... . ..--|+++.|-. ...+++|..-|+|.+||.... ..++....| ...+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h----~adV 248 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFG----TLIQSHSCH----DADV 248 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCc----chhhhhhhh----hcce
Confidence 9999999887665211 1 223467777764 457999999999999997643 333333333 4678
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCcee----eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI----LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.+++-.+++.++++++.|+.|..|...++.. ......|...|.+++..++ .+.++|.|..+.+
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999999999887766532 2345678889999999888 8999999998876
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=5.7e-23 Score=177.35 Aligned_cols=264 Identities=14% Similarity=0.175 Sum_probs=187.4
Q ss_pred eeEecCccccEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAW 127 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iw 127 (347)
...+.+|. .+..++|+|++..+ ++++.++.|++|+.... +....+..+. .+..++|+|+++.++++ +.|+.+++|
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 34455554 46789999999876 67788999999998643 3333344443 35678999999977654 568999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE-ecC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG-GID 205 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 205 (347)
|+.+.+.+..+... ..+..+.+++++. ++++++.++ .+.+||.+++..............+.|++++..++++ ..+
T Consensus 101 d~~~~~~~~~~~~~-~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPVG-VEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeCC-CCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 99987766655422 2345567777654 566666554 5677898877665544444456789999999988655 468
Q ss_pred CcEEEEeCCCCceEEEecCCC-----C--ceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQ-----D--MITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~-----~--~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+.|++||+++++....+..+. . ....++|+|+++++++ .+.++.+.+||++.. .....+.. ..
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-----~~ 249 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY----EVLDYLLV-----GQ 249 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC----cEEEEEEe-----CC
Confidence 999999999887665543221 1 2346889999998655 455678999998743 22222221 13
Q ss_pred ceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 278 NLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
.+..++|+|+|++|+++ +.+|.|++||+.+++++.+++.. +..+.++|+|
T Consensus 250 ~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 250 RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 47788999999999886 46899999999999999888754 6669998876
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=9.8e-25 Score=178.95 Aligned_cols=257 Identities=23% Similarity=0.415 Sum_probs=195.2
Q ss_pred ecCccccEEEEEECCCC--CeEEEeeCCCcEEEEeccC---------------CCeeeEEEeCcccceeEEEEcCC-CCE
Q 019006 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHG---------------DCKNFMVLKGHKNAILDLHWTTD-GSQ 114 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~--~~l~s~~~d~~v~~w~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~-~~~ 114 (347)
...|.+.++.+.-++-+ .+.|+-+..|.|.+|++.. ..+++..+.+|...-+.++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 44788888888877654 6788889999999999732 12456778899999999999993 235
Q ss_pred EEEecCCCeEEEEECCCCcee---eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---CceeecCCCCceE
Q 019006 115 IISASPDKTLRAWDVETGKQI---KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---GAIQTFPDKYQIT 188 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~v~ 188 (347)
|++|..-+.|++|...++.-. .-+..|...|..++++|....+|++|+.||+|+|||+|.+ ..+..-.+...|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 888888899999998876532 2355699999999999999999999999999999999977 3344445667899
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCC---CceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRK---GEVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
.+.|+....+|++|+.||+++|||+|. ++++.+++.|+.+|+++.|+|. ...++++|.|..|.+||+..-....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e-- 384 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE-- 384 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh--
Confidence 999999888999999999999999985 5677889999999999999995 4678888999999999986311000
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCc
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQ 341 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~ 341 (347)
..- .++... +-|+ ..++++...| +.++.++.||+.-+ +++|.+.||.
T Consensus 385 -------------e~~----~~a~~~-----------L~dl-PpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 385 -------------EID----QEAAEG-----------LQDL-PPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred -------------hhc----cccccc-----------hhcC-CceeEEEecc-hhHhhhheeccCCCCeEEEecccce
Confidence 000 000000 1122 2344444333 45789999999875 7888888875
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.4e-25 Score=183.94 Aligned_cols=237 Identities=25% Similarity=0.442 Sum_probs=186.2
Q ss_pred CCeEEEeeCCCcEEEEeccC--CCeeeEE------------------EeCcccceeEEEEcCCC-CEEEEecCCCeEEEE
Q 019006 69 GTVIASGSHDRDIFLWHVHG--DCKNFMV------------------LKGHKNAILDLHWTTDG-SQIISASPDKTLRAW 127 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~--~~~~~~~------------------~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw 127 (347)
|+++|.|..|..|.|||+.= ...+... -.+|++.|.++.|+..- +.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999851 1111112 23699999999998754 578999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeecCCCCceEEEEEcCCCC-eEEEEecC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTFPDKYQITAVSFSDASD-KIYTGGID 205 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 205 (347)
|+.++++...+..|+..|.++.+++..+..+++|+.|+++.+.|.|... .-........|-.+.|+|... .+++++.|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 9999999999999999999999999999999999999999999998422 222334456788999998765 56778899
Q ss_pred CcEEEEeCCCC-ceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 206 NDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 206 g~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
|+|+-+|+|.. +++.++++|.+.|.++++++.- ..++|++.|+.+++|++....+.. ...|...+ ....+.+
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-----v~~~~~~~-~rl~c~~ 425 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-----VKEHSFKL-GRLHCFA 425 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-----cccccccc-cceeecc
Confidence 99999999975 8899999999999999998864 578889999999999987543321 11121111 2355566
Q ss_pred ECCCCC-EEEEeeCCCeEEEEeCCCceee
Q 019006 284 WSPDGS-KVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 284 ~s~~g~-~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
+.|+-. +|+.|+..+.++|||..+...+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 777654 5677888889999998876543
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=8.3e-24 Score=179.56 Aligned_cols=286 Identities=19% Similarity=0.291 Sum_probs=217.8
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-------------C---------------ee-----------eEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-------------C---------------KN-----------FMV 95 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-------------~---------------~~-----------~~~ 95 (347)
.|.+.|+++..-.+|.+|- |+.|+.|..||-.-+ . +. ...
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 8999999999999888775 999999999983200 0 00 013
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
..+|.+..+.++.+|+.++++|++.|+.+++|+ ..+.+.... -...+.+..+++.+ .++.|+..|...+.|.++.
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccc
Confidence 457888999999999999999999999999999 334333322 23345566777776 7889999999999999998
Q ss_pred CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE-e-cCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT-L-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
..+.......+++++.|+|+|.+||.|+.|+.|++|.+..+..... . +.+..+|+.+.|++|++++.+.+.|..|.+|
T Consensus 439 ~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 8877777778999999999999999999999999998865433322 1 2234789999999999999999999999999
Q ss_pred eCCCCCCcCceeEEEec-----------cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC---ceeeEEecCCcc
Q 019006 254 DMRPYAPQNRCVKILEG-----------HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS---RRILYKLPGHTG 319 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~---~~~~~~~~~h~~ 319 (347)
... ...+...++-++. ........+..++-+.++++||+|.+.|+|++|...- ...-.++.+|+.
T Consensus 519 ~~~-~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~ 597 (626)
T KOG2106|consen 519 KPS-ECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS 597 (626)
T ss_pred ccc-cCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence 432 1222211111110 0001112344455577889999999999999998643 233457889999
Q ss_pred CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 320 SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 320 ~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
-|.+|+|..+...+++.+.|.+|..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999999999999999999999985
No 131
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.2e-24 Score=188.33 Aligned_cols=291 Identities=20% Similarity=0.367 Sum_probs=211.8
Q ss_pred cCeeEecCccccEEEEEECCCC---CeEEEeeCCCcEEEEeccCCC--------------------eee----------E
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAG---TVIASGSHDRDIFLWHVHGDC--------------------KNF----------M 94 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~---~~l~s~~~d~~v~~w~~~~~~--------------------~~~----------~ 94 (347)
.....+.||.+-|++++|+..+ -+|||+|+|..|+||.+.-.. ... .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3456789999999999998654 489999999999999873111 000 0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eee-----eeeccCcceeEeecCCCCCCEEEEEcCCCce
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIK-----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i 167 (347)
.+.||.+-|.++.|+|++..|++++.|.++.+|...+.. -+. .+.+.......+.++++. ..+++-+.-|-.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGF 340 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcE
Confidence 134999999999999999999999999999999765542 111 122122234556676665 577888889999
Q ss_pred EEEeCCCCCceee---c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC---------------------------
Q 019006 168 KLWDMRQRGAIQT---F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG--------------------------- 216 (347)
Q Consensus 168 ~iwd~~~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------------- 216 (347)
++|-.+....... + .|-..|..++|+|.|+++++.+.|.+-|+|-.-..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 9998332111111 1 23456888888888888888888877666532100
Q ss_pred --------ce----------------------------------------------------------------------
Q 019006 217 --------EV---------------------------------------------------------------------- 218 (347)
Q Consensus 217 --------~~---------------------------------------------------------------------- 218 (347)
+.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 00
Q ss_pred -----------------EEEecCCCCceeEEEECCCCCEEEEEcCC-----CcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 219 -----------------SMTLQGHQDMITGMSLSPDGSYLLTNGMD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 219 -----------------~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
+..+.+|.-.|.+++.+|+++.+|++... ..|++|+...... ++.+.+|.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~----~~~L~~Hs---- 572 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ----VQELEGHS---- 572 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh----hheecccc----
Confidence 00123566678999999999999998753 4689999875332 33455554
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee----eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI----LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
-.|..++|||||++|++.|.|+++.+|....... ...++.|+.-|++..|+|+++.++|+|.|++|.+|..
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 3588999999999999999999999998754322 2247899999999999999999999999999999963
No 132
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=8.3e-24 Score=170.40 Aligned_cols=275 Identities=21% Similarity=0.325 Sum_probs=207.0
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-------ee----eEEEe-CcccceeEEEEc-------CCCCEEEEec
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-------KN----FMVLK-GHKNAILDLHWT-------TDGSQIISAS 119 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-------~~----~~~~~-~h~~~v~~~~~~-------~~~~~l~s~~ 119 (347)
....+.|+|||..|.+-+.|..+.+|++.... .. ...++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567999999999999999999999985211 00 01111 122457777774 6778899999
Q ss_pred CCCeEEEEECCCCceeeeeec--cCc---ceeEeecCCCCCCEEEEEcCCCceEEEeC-CCCCceeec---C-----CCC
Q 019006 120 PDKTLRAWDVETGKQIKKMAE--HNS---FVNSCCPSRRGPPLVVSGSDDGTAKLWDM-RQRGAIQTF---P-----DKY 185 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~s~~~d~~i~iwd~-~~~~~~~~~---~-----~~~ 185 (347)
.|.-|++||.-+|+....+.. |.. ...+++|++++..+ + ++...+|+++|+ |.+.....+ . ...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-f-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-F-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-e-ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999999987655533 222 23467888887654 3 456789999999 444322211 1 234
Q ss_pred ceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCc
Q 019006 186 QITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 186 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~ 263 (347)
-+.+++|+|... .++.|+....+-||.-....+...+-+|.+-|+.+.|+++|+.|++|+. |..|..||+|... .
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~---~ 285 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR---D 285 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc---c
Confidence 578899999765 7889999889989888888888889999999999999999999999986 5689999998643 2
Q ss_pred eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-ceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-RRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.+..+..|...-+ .-+-....|+|++|++|+.||.|++||++. +.....+..|+..++.|+++|--+++|+++..
T Consensus 286 pv~~L~rhv~~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 286 PVYALERHVGDTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhhccCcc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3344444443212 222344579999999999999999999988 77677888999999999999999999999865
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=9.2e-25 Score=183.12 Aligned_cols=209 Identities=27% Similarity=0.513 Sum_probs=173.5
Q ss_pred cCeeEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCe------eeEEEeCcccceeEEEEcC-CCCEEEEec
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCK------NFMVLKGHKNAILDLHWTT-DGSQIISAS 119 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~ 119 (347)
.|-..|.||+.+=++|+|++.. -.|++|+.|++|.+||+..... +...+.+|.+.|..++|++ +...+++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 4566899999989999999854 5789999999999999964322 3456889999999999998 456788999
Q ss_pred CCCeEEEEECC--CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec-CCCCceEEEEEcCC
Q 019006 120 PDKTLRAWDVE--TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDA 195 (347)
Q Consensus 120 ~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~ 195 (347)
.|+.+.|||++ +.+.......|.+.++++.+++.+..+|++|+.|+++.+||+|+-. ++..+ .++..|.++.|+|.
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999999 4455566778999999999999999999999999999999999643 34444 46678999999998
Q ss_pred CC-eEEEEecCCcEEEEeCCCC--------------ceEEEecCCCCceeEEEECCCCCE-EEEEcCCCcEEEEeCC
Q 019006 196 SD-KIYTGGIDNDVKVWDLRKG--------------EVSMTLQGHQDMITGMSLSPDGSY-LLTNGMDCKLCIWDMR 256 (347)
Q Consensus 196 ~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~i~~v~~~~~~~~-l~t~~~d~~i~~wd~~ 256 (347)
.. .|++++.|+.+.+||+..- +..+.-.||...|..+.|+|...+ +++.+.|+.+.||++.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 65 6678889999999998632 234566789999999999998775 5677889999999875
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.3e-25 Score=183.90 Aligned_cols=242 Identities=22% Similarity=0.347 Sum_probs=185.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC-----
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET----- 131 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~----- 131 (347)
.+.|.+++-+|+|.+|+.|+..|.+++|.+.. ...+..+.+|-..|+++.|+.||.+|+|||.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 46799999999999999999999999999964 355566789999999999999999999999999999998642
Q ss_pred ----CceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 132 ----GKQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 132 ----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
-+.+..+..|.-.|.++..... ....+++++.|.++++||+..+..+.++.....+.+++.+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 2356677788888887665443 34578999999999999999999988888888999999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|.+.++.... +....|..=.+++++ .....+.+|.. ...|.+++++-
T Consensus 240 ~I~~~~~~~~~------~~~~~v~~k~~~~~~------------------------t~~~~~~Gh~~--~~~ITcLais~ 287 (476)
T KOG0646|consen 240 KIFQNLLFKLS------GQSAGVNQKGRHEEN------------------------TQINVLVGHEN--ESAITCLAIST 287 (476)
T ss_pred eEEeeehhcCC------ccccccccccccccc------------------------ceeeeeccccC--CcceeEEEEec
Confidence 99998874321 111111111112211 11222333321 24688888888
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
||.+|++|+.||.|.|||..+.+++.++..-.++|+.+.+.|-.+
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 888888888888888888888888877765667888888866543
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.2e-26 Score=201.62 Aligned_cols=237 Identities=24% Similarity=0.461 Sum_probs=205.9
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+..|...|.++..-..++.+++|+.|..+-+|.+.. ......+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccC-CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 4568999999999877789999999999999999853 344456899999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
++.++++.+|...+..+.|+|-+ .++++|+.|+.+++||++...+...+..+ ..+.++.|+|+|.+++.|+.|..+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 99999999999988888888765 46789999999999999988888887654 45788999999999999999999999
Q ss_pred EeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 211 wd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
||+..|+...+|..|...+..+.|+|..-.+++||.|+++++||++.++. +.... .....+.+.+|+|++..
T Consensus 181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~----I~s~~----~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV----ISSGK----PETDGVRSLAFNPDGKI 252 (825)
T ss_pred ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE----eeccC----CccCCceeeeecCCcee
Confidence 99999999999999999999999999999999999999999999985421 11111 12467889999999999
Q ss_pred EEEeeCCC
Q 019006 291 VTAGSSDR 298 (347)
Q Consensus 291 l~sgs~dg 298 (347)
+++|-.+.
T Consensus 253 ~~~G~q~s 260 (825)
T KOG0267|consen 253 VLSGEQIS 260 (825)
T ss_pred eecCchhh
Confidence 99997653
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.9e-24 Score=169.74 Aligned_cols=211 Identities=23% Similarity=0.406 Sum_probs=170.9
Q ss_pred EeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce------eee---------eeccCcceeEeecCCCCCCEEE
Q 019006 96 LKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ------IKK---------MAEHNSFVNSCCPSRRGPPLVV 159 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~------~~~---------~~~~~~~v~~~~~~~~~~~~~~ 159 (347)
.+.|.+.|.++...+ .|+++++|+.||.|.+||+++... +.+ -..|.-.|.++.+.|-+.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346888999998876 789999999999999999976431 100 0124445667777787778999
Q ss_pred EEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCC---CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 160 SGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS---DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 160 s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
+++-|.++++||..+-+....|..+..|.+-+++|-. -.+++|..+-.|++.|+.+|...+.+++|.+.|.++.|+|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999998888888888888888888753 3677888888999999999999999999999999999999
Q ss_pred CCCE-EEEEcCCCcEEEEeCCCCCCcCceeEEEeccc----------cccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 237 DGSY-LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ----------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 237 ~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
...+ |++|+.||.|++||+|... .|...+..|. ..+.+.+..++|+.||.++++.+.|..+++|+.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRras---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRAS---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred CceeEEEecCCCceEEEEEeeccc---ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 8775 6789999999999998532 2344443332 123467889999999999999999999999998
Q ss_pred CCce
Q 019006 306 TSRR 309 (347)
Q Consensus 306 ~~~~ 309 (347)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 7764
No 137
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=4.4e-24 Score=172.29 Aligned_cols=293 Identities=19% Similarity=0.372 Sum_probs=219.7
Q ss_pred eEecCccccEEEEEECC-----CCCeEEEeeCCCcEEEEeccCCC--eeeEEE--eCcccceeEEEEcCC----CCEEEE
Q 019006 51 MLLTGHQSAVYTMKFNP-----AGTVIASGSHDRDIFLWHVHGDC--KNFMVL--KGHKNAILDLHWTTD----GSQIIS 117 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~-----~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~--~~h~~~v~~~~~~~~----~~~l~s 117 (347)
.+.++|..+++.++|++ +.+.+|+.|. +.+.+|+..++. ..+... ..|......++|+-+ .-++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999985 2245665555 568888887654 222221 236667788888753 347889
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CCCceEEEEEc
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFS 193 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~ 193 (347)
+|.-|.|+|.|+.+++....+..|+..++.+.+.|..++++++++.|..|++||+++..++..+. |...|.++.|+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999888774 56789999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCce------EE----------------------EecCCCCceeEEEECCCCCEEEEEc
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEV------SM----------------------TLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~------~~----------------------~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
.++.++++++.|..|++|++...+. .. +-.-|..+|-|+.|- |+++++-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence 9999999999999999999873221 10 112355556666663 57899999
Q ss_pred CCCcEEEEeCCCCCC-------cCceeEEEeccccc-cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee--EEec
Q 019006 246 MDCKLCIWDMRPYAP-------QNRCVKILEGHQHN-FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL--YKLP 315 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~--~~~~ 315 (347)
-++.|..|.....+. ...+...+....-. -+......+|.|-+++||.|...|.|++||++..+.. .++.
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 999999997632221 11122222111110 0122445567788999999999999999999887653 2332
Q ss_pred CC--ccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 316 GH--TGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 316 ~h--~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+ ...|...+|+.++.+|+....|++|+=||
T Consensus 349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 349 HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 22 34689999999999999999999999887
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=177.12 Aligned_cols=262 Identities=19% Similarity=0.299 Sum_probs=194.4
Q ss_pred EeeCCC-cEEEEeccCCCeeeEEEeCc-ccceeEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeeeccCcceeEeec
Q 019006 74 SGSHDR-DIFLWHVHGDCKNFMVLKGH-KNAILDLHWTTDGSQIISASP-DKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150 (347)
Q Consensus 74 s~~~d~-~v~~w~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 150 (347)
+++.|. ++.+||+... .....+++. ...-.++..- +..+++++.. -..+.+|.+...........-++.+.++..
T Consensus 12 ssS~d~~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTG-TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCCC-ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 444444 4889999644 333444443 1111111111 2356776653 457999998766554433334556666655
Q ss_pred CCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCC---------CCceEE
Q 019006 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLR---------KGEVSM 220 (347)
Q Consensus 151 ~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~ 220 (347)
++. +.+++.|+..|.|++|.+.++..+..+..+ ..|+|+.|+.++.++++|+.||.|.+|++- +-+...
T Consensus 90 ~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 90 SNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred CCC-ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 555 467777779999999999999988777544 479999999999999999999999999763 234567
Q ss_pred EecCCCCceeEEEECCC--CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 221 TLQGHQDMITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.+..|+-+|+++...+. ..+++|+|.|.++++||+... ..+..+ .++..+.+++.+|.+..++.|+.+|
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti-----~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTI-----TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----eeeEEE-----ecCCcceeEEEcccccEEEecCCcc
Confidence 78899999999987764 568999999999999999743 333222 2356789999999999999999999
Q ss_pred eEEEEeCCC----------------ceeeEEecCCcc--CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 299 MVYIWDTTS----------------RRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 299 ~i~vwd~~~----------------~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|.+.++.. +..+..+.||.+ .|++++++-|+.+|++|+.||+|+|||+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 999987532 223456789988 9999999999999999999999999996
No 139
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=170.37 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=199.3
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
.|.+.|++|.+.|+++.|..+++ |.+|..-|.|++|.+.++. ....++ .|...|+.+.--|+ +.+.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc-cchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 56788999999999999987766 8899999999999997653 344555 56778999988887 57889999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCC-----CCC---CEEEEEcCCC-ceEEEeCCCCCceeec-----CCCCceEEEEE
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSR-----RGP---PLVVSGSDDG-TAKLWDMRQRGAIQTF-----PDKYQITAVSF 192 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~~~~s~~~d~-~i~iwd~~~~~~~~~~-----~~~~~v~~~~~ 192 (347)
|++..+..+. .|.-.++++-|.+ ... .+++.-+... ...+-|......++.. .....+.+..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9987644321 1221222211111 100 1111111000 0111121111111111 12234666664
Q ss_pred cCC-CC--eEEEEecCCcEEEEeCCCCceE----------EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 193 SDA-SD--KIYTGGIDNDVKVWDLRKGEVS----------MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 193 ~~~-~~--~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
..+ +. .+++|.++|.+.+||+.++... .....|..+|.++.+.+.-..=++++.+..+..|.+....
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 322 22 4567889999999999887433 3445688899999999877777888989899999886432
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.....-..+.-. +-.+..+..-||++.+|+++.|+.||||+.++.+.+..++.|+..|++++|+|+.++||.+|+|
T Consensus 239 gslq~~~e~~lk----npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 239 GSLQIRKEITLK----NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred CcccccceEEec----CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 111111111111 1134456678999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
++|-+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=8e-23 Score=173.63 Aligned_cols=274 Identities=17% Similarity=0.330 Sum_probs=210.5
Q ss_pred ecCcc-ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQ-SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~-~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
++.++ ..|.||.|.++|+.+ +|..+|.|.+|+..+ ++.......|.+.|.+++...+|. |++|+.|..|..|| ..
T Consensus 241 fek~ekk~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~ 316 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGDVI-TGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DN 316 (626)
T ss_pred cccccceEEEEEEEcCCCCEE-eecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-cc
Confidence 44443 579999999999865 999999999999854 444444559999999999999986 55699999999999 43
Q ss_pred Cceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 132 GKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 132 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
.+.++. +....+.+..++....+ ++.|+..+.|..=.+.++-....+.+..+...++.+|+.+.+++++.|+.++
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~d---i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGD---ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCc---EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence 333333 33445566666654433 5667777777777777766666666777899999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+|+ ..+...+.+ -.++..++.|+|.| .+|.|...|...+.|..+ ...+.. |.. ...+..++|+|+|.
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~----~~lv~~---~~d--~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET----QDLVTI---HTD--NEQLSVVRYSPDGA 460 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc----ceeEEE---Eec--CCceEEEEEcCCCC
Confidence 998 444444433 24678999999999 999999999999999874 222222 222 46789999999999
Q ss_pred EEEEeeCCCeEEEEeCCCc-eeeEEec-CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSR-RILYKLP-GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+||.||.|+.|++|.+... +...+.. .|..+|+.+.|++|++++.+-|.|-.|..|+
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999999987654 3333332 2337899999999999999999999998884
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.1e-24 Score=184.71 Aligned_cols=238 Identities=18% Similarity=0.346 Sum_probs=197.2
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeee-EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF-MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
...++++.+.|||+.|++|+.-.++.|||+......+ ..+..-.-...+++.+||.+..+++..||.|.|||+.+...+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 4577899999999999999999999999996442211 122233345678899999999999999999999999999999
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
+.|.+|...+.++..++++ ..+.+|+-|.++|.||++++...+.+....+|.++.+.|.+.++++|..++.+.+-...
T Consensus 545 rqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s- 622 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS- 622 (705)
T ss_pred ecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-
Confidence 9999999988877776665 56899999999999999998887777777889999999999999999999999888754
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
+...+.+.-|.+.|.++.|.+-|+++++.|.|+.+..|..-- +..+ +.. .-...|.+|..|.|.++|++||
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy----Gasi--Fqs---kE~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY----GASI--FQS---KESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc----ccce--eec---cccCcceeeeeccCceEEEecC
Confidence 334566667889999999999999999999999999997542 2222 211 1235799999999999999999
Q ss_pred CCCeEEEEeC
Q 019006 296 SDRMVYIWDT 305 (347)
Q Consensus 296 ~dg~i~vwd~ 305 (347)
.|+...||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888864
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.1e-25 Score=195.01 Aligned_cols=237 Identities=22% Similarity=0.341 Sum_probs=186.0
Q ss_pred EEEEEECC-CCCeEEEeeCCCcEEEEeccC--CCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcee
Q 019006 60 VYTMKFNP-AGTVIASGSHDRDIFLWHVHG--DCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 60 V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
+..|+|+. +.++|||++..|.|.+||+.. ..+.+..+..|+..+.++.|++ ...+|++||.||+|++||+...+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44667774 468999999999999999965 2344457889999999999997 4568999999999999999988888
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
..+......+.++.+++..++.|+++...|.+++||+|+.... +...|.+.|.|+.|+|+..+||+|+.|+.|+|||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 8888888889999999998999999999999999999965432 23356789999999999999999999999999999
Q ss_pred CCCce--EEEecCCCCceeEEEECCCCCE-EEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-C
Q 019006 214 RKGEV--SMTLQGHQDMITGMSLSPDGSY-LLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-D 287 (347)
Q Consensus 214 ~~~~~--~~~~~~~~~~i~~v~~~~~~~~-l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~ 287 (347)
.+++. ..++. ...+|..++|.|...+ |++++ .|-.|++||++... -+...+..|. ..+..++|.. |
T Consensus 250 t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~----~~vt~i~W~~~d 321 (839)
T KOG0269|consen 250 TDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHT----DSVTGIAWDSGD 321 (839)
T ss_pred cCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc---ccceeeeccC----ccccceeccCCC
Confidence 76543 23332 2357899999998664 55554 57899999997432 2233444443 4566777754 5
Q ss_pred CCEEEEeeCCCeEEEEe
Q 019006 288 GSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd 304 (347)
-..|.+++.||.|..-.
T Consensus 322 ~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHL 338 (839)
T ss_pred ceeeEeecCccHHHHhh
Confidence 56788999998876543
No 143
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=181.49 Aligned_cols=241 Identities=19% Similarity=0.307 Sum_probs=175.7
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----QIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
..+++|+..|.++++.|.|.++++||.|-+|++||+..-. ..+.+. .....+.++.+++.+.. ++..+..-..+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~-iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ-ILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe-EEEEecCccee
Confidence 4678899999999999999999999999999999987432 122222 23345667777776654 44455567889
Q ss_pred EEeCCCCCceeec-------------CCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEe------cCCCCc
Q 019006 169 LWDMRQRGAIQTF-------------PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTL------QGHQDM 228 (347)
Q Consensus 169 iwd~~~~~~~~~~-------------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~ 228 (347)
++|-......... .|-..++|.+|+|... .|++++.||++|+||+...+..... .+-.-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9986543322211 2334689999999854 7889999999999998765432221 122346
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-
Q 019006 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS- 307 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~- 307 (347)
++..+|+++++.+|+|..||.|.+||.+.... ......-..|.. -..+.++.||+||++|++-+.|+.+++||++.
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCccc-ccceEeeeccCC--CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 88999999999999999999999999864321 112223334432 23699999999999999999999999999986
Q ss_pred ceeeEEecCCc--cCeeeEEEcCCCCEEEEecC
Q 019006 308 RRILYKLPGHT--GSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 308 ~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~ 338 (347)
++++....+-. -.-++++|+|+.++|.||.+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 44555444433 24578999999999999874
No 144
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-21 Score=175.50 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=225.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee----eEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN----FMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRA 126 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~----~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~i 126 (347)
+.+|.+.|.-+. |-|..|+++..++.+++|+......+ ...++...+.|+++ ++|. =+.|+.|+.+|.+.+
T Consensus 110 ~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql 186 (910)
T KOG1539|consen 110 TLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQL 186 (910)
T ss_pred eccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEE
Confidence 445555555443 56888999999999999998652111 11222323337776 4554 357899999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCe-EEEEec
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDK-IYTGGI 204 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~-l~~~~~ 204 (347)
|++.+++.+.++......|+++...|.- ..++.|..+|+|.++|++.++.+.++.++ ++|++++|.-||+. +++|+.
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 9999999999999999889888777654 47889999999999999999999999886 89999999998874 566777
Q ss_pred CCcEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC-------------ceeEEE--
Q 019006 205 DNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN-------------RCVKIL-- 268 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-------------~~~~~~-- 268 (347)
.|.+.+||+...+....++ .|.+.|....|-|....+++++.|+.+++|=........ .|++.+
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence 7999999998877666554 788889999999999999999999988887332000000 000000
Q ss_pred ----------------------------------------------------------------------ec--------
Q 019006 269 ----------------------------------------------------------------------EG-------- 270 (347)
Q Consensus 269 ----------------------------------------------------------------------~~-------- 270 (347)
..
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence 00
Q ss_pred -----------cc------cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe---cCCccCeeeEEEcCCC
Q 019006 271 -----------HQ------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL---PGHTGSVNESVFHATE 330 (347)
Q Consensus 271 -----------~~------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~ 330 (347)
|. .+....+.+++.++.|++.+.|++.|.|-+|++.+|-....+ ++|.++|..++....+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 00 001234677888999999999999999999999999888887 6999999999999999
Q ss_pred CEEEEecCCCcEEeecC
Q 019006 331 PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~~ 347 (347)
+.++|++.||.+..||+
T Consensus 506 ~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDF 522 (910)
T ss_pred ceEEEccCcceEEEEec
Confidence 99999999999999985
No 145
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.8e-23 Score=183.12 Aligned_cols=244 Identities=20% Similarity=0.390 Sum_probs=199.1
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC---CCCEEEEecCCCeEEEEECC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT---DGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~ 130 (347)
-+....+++++.+|+|++||+|..-|++++|++.. ......+.+|...|.++.|+. ..++|++++.|..|.|+|+.
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 35667899999999999999999999999999963 344556789999999999985 34689999999999999986
Q ss_pred CC-ceeeeeeccCcceeEeecCCCCC-CEEEEEcCCCceEEEeCCC-CCceeecC------CCCceEEEEEcCCCCeEEE
Q 019006 131 TG-KQIKKMAEHNSFVNSCCPSRRGP-PLVVSGSDDGTAKLWDMRQ-RGAIQTFP------DKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 131 ~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~d~~i~iwd~~~-~~~~~~~~------~~~~v~~~~~~~~~~~l~~ 201 (347)
.. ..+.++..|...|.++.|.-.+. ...++++.|+.|.+ +..+ ......++ .+..++.++..|..+++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 54 45677888999999888765542 35678888877654 3332 11111221 2456899999999999999
Q ss_pred EecCCcEEEEeCCCCceEEEecC---CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQG---HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
++.|..|+|||+.+++....+++ |.+....+...|.|.|+++...|.++.++|... +.|+..+.+|. ..
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s----gEcvA~m~GHs----E~ 685 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS----GECVAQMTGHS----EA 685 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc----chhhhhhcCcc----hh
Confidence 99999999999999999998875 556677789999999999999999999999874 55666777764 57
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
|..+.|.+|.+.|++.+.||.|.||.+..
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECch
Confidence 89999999999999999999999998754
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.4e-24 Score=198.00 Aligned_cols=277 Identities=23% Similarity=0.389 Sum_probs=211.1
Q ss_pred EEEECCCCC-eEEEe----------eCCCcEEEEeccCC--C---eeeEEEeCcccceeEEEEcCCCCE----EEEecCC
Q 019006 62 TMKFNPAGT-VIASG----------SHDRDIFLWHVHGD--C---KNFMVLKGHKNAILDLHWTTDGSQ----IISASPD 121 (347)
Q Consensus 62 ~v~~~~~~~-~l~s~----------~~d~~v~~w~~~~~--~---~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d 121 (347)
.++|+|++. +||+| +.+.++.||.+... . +....+ .-..+...++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 457888875 45544 23455666655311 1 111111 12346788999987765 8889999
Q ss_pred CeEEEEECCCC------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec---CCCCceEEEEE
Q 019006 122 KTLRAWDVETG------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---PDKYQITAVSF 192 (347)
Q Consensus 122 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~ 192 (347)
|.|.+||.... ..+.....|.+.|..+.+++..++++++|+.||.|.|||+.+-..-... .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997652 2345567799999999999999899999999999999999864332222 23457999999
Q ss_pred cCCC-CeEEEEecCCcEEEEeCCCCceEEEecCCCC--ceeEEEECCCC-CEEEEEcCCC---cEEEEeCCCCCCcCcee
Q 019006 193 SDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD--MITGMSLSPDG-SYLLTNGMDC---KLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 193 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~v~~~~~~-~~l~t~~~d~---~i~~wd~~~~~~~~~~~ 265 (347)
+..- ..|++++.+|++.|||+|..+.+..+..+.. .+..+.|+|+. ..+++++.|. .|.+||+|.. ...+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---ssP~ 246 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---SSPL 246 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---CCch
Confidence 8654 4677899999999999999887777765543 46789999975 4566666543 7999999853 3445
Q ss_pred EEEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEE
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIY 343 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~ 343 (347)
+.+++|. ..+.++.|++.+ .+|++++.|+.|.+|+..+++.+..++.....+.++.|.|..+ .|+.++-||.|-
T Consensus 247 k~~~~H~----~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 247 KILEGHQ----RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhcccc----cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 6666664 568999999977 8899999999999999999999999999889999999999998 888888999998
Q ss_pred eec
Q 019006 344 LGE 346 (347)
Q Consensus 344 i~~ 346 (347)
|.-
T Consensus 323 I~s 325 (1049)
T KOG0307|consen 323 IYS 325 (1049)
T ss_pred eee
Confidence 764
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-22 Score=172.22 Aligned_cols=260 Identities=19% Similarity=0.295 Sum_probs=201.3
Q ss_pred cEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeE---EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 59 AVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFM---VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 59 ~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.++++.|+.... ..|+.+.|..+++|.-.+....+. .+.+. .-.|++......++++|+..+.|+|||+.....
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 488999987663 445667788999997765422222 22222 334444444458999999999999999997666
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--CceEEEEEcCCCCeEE-EEecCCcEEEE
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--YQITAVSFSDASDKIY-TGGIDNDVKVW 211 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~-~~~~dg~i~iw 211 (347)
.+.++.|..-|..+..... ..++++++..|-|.+..+.++.....+.+. ..+.-+.|++..+.++ +++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 7778889888877766544 468999999999999999988877777654 3466899999887654 68899999999
Q ss_pred eCCCCceEEEe-cCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 212 DLRKGEVSMTL-QGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 212 d~~~~~~~~~~-~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
|.......+.+ ..|..+...|+|+|.+ ..|++.|.|..|.+||.+.... ...+. +..+...++|+++|.
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----~~~l~-----y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----TDRLT-----YSHPLSTVAFSECGT 263 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc----cceee-----ecCCcceeeecCCce
Confidence 99766555543 5688899999999965 4677889999999999984332 22222 234688999999999
Q ss_pred EEEEeeCCCeEEEEeCCC-ceeeEEecCCccCeeeEEEcCCC
Q 019006 290 KVTAGSSDRMVYIWDTTS-RRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
+|+.|+..|.|+.||++. +.++..+.+|..+|.+++|.|..
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999999986 56788899999999999998875
No 148
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-23 Score=176.46 Aligned_cols=294 Identities=24% Similarity=0.380 Sum_probs=227.5
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
..|..|.+-|..|.|+..|..|++|+.|..|.+|++......+....+|...|..-.|-| +...|++++.||++++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 457899999999999999999999999999999999765555555678999998888987 356799999999999876
Q ss_pred CCC-Cce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CC---CceEEEEEcCCCC-
Q 019006 129 VET-GKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DK---YQITAVSFSDASD- 197 (347)
Q Consensus 129 ~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~---~~v~~~~~~~~~~- 197 (347)
+.. +.. ...+..|.+.+..++..|..++-|.+++.|+.+.-+|++++.+...+. +. .....++.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 543 222 345667888888888888888889999999999999999876554432 11 2467788888765
Q ss_pred eEEEEecCCcEEEEeCCCCceE------EEecC------CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC------
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVS------MTLQG------HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA------ 259 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~------~~~~~------~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~------ 259 (347)
.+++|+.|-.+++||.+.-... ..+.. ..-.|++++|+.++.-|+++-.|-.|+++.-.-..
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 7889999999999998753321 22211 12358999999887777777778789998432110
Q ss_pred --CcCceeEE-EeccccccccceEEEE-ECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 260 --PQNRCVKI-LEGHQHNFEKNLLKCG-WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 260 --~~~~~~~~-~~~~~~~~~~~~~~~~-~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
+....++. +++|... ..|..+- |.|...|+++||.-|.|.+|+-.+++++..+.|-..-|+++.-||--+.|||
T Consensus 376 ~s~~~~~~k~vYKGHrN~--~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNS--RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred Ccchhhccchhhcccccc--cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 00122222 5666432 2344443 6899999999999999999999999999988887779999999999999999
Q ss_pred ecCCCcEEeec
Q 019006 336 CSSDKQIYLGE 346 (347)
Q Consensus 336 ~s~D~~i~i~~ 346 (347)
+|-|..|+||.
T Consensus 454 SGid~DVKIWT 464 (559)
T KOG1334|consen 454 SGIDHDVKIWT 464 (559)
T ss_pred cCCccceeeec
Confidence 99999999995
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=7.6e-22 Score=173.04 Aligned_cols=271 Identities=15% Similarity=0.271 Sum_probs=207.1
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.|+.++|.|||..|+.+..+ .+.+||.. +......+++|++.|.+++|+.||+.+++|+.|+.|.+|+..-.-.+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~n-dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTS-DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCC-CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence 79999999999887766554 58899985 44567789999999999999999999999999999999985432222 2
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (347)
..|+..+.+..++|-.. .+++++-+ ..-+|...++ .+.......++.+.+|..||.+++.|..+|+|.+-+ .+++.
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEE 165 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCc
Confidence 25888888888888764 45555532 3567766543 333444456789999999999999999999999986 34555
Q ss_pred EEEec---CCCCceeEEEECCCC-----CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 219 SMTLQ---GHQDMITGMSLSPDG-----SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 219 ~~~~~---~~~~~i~~v~~~~~~-----~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
...++ +.+++|.+++|+|.. ..+++.....++.++.+.. +.+.. .........++.+-++|.+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-----~~Igk----~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-----KQIGK----DRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-----eeecc----cccCCCCchhheeccCCcE
Confidence 44444 367899999999963 3677777777777777642 11111 1122334667889999999
Q ss_pred EEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 291 VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+..|+.|+.+.+|. +.|..+.++......|+.|+.+|+++.++-|..||+|..+.+
T Consensus 237 ~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 99999999999996 567777777777889999999999999999999999987653
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=6.3e-22 Score=166.31 Aligned_cols=247 Identities=19% Similarity=0.240 Sum_probs=188.8
Q ss_pred EEeCcccceeEEEEcCCC--CEEEEecCCCeEEEEECCCC----ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 95 VLKGHKNAILDLHWTTDG--SQIISASPDKTLRAWDVETG----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
..+-+..+|++++|+|.. +++++|+.-|+|-+||+.+. ..+..+..|...|..+.+++.+...+++.+.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 455688899999999964 46788888999999999522 335567788899999999999988999999999999
Q ss_pred EEeCCCCCceeecCC---CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCC-CEEEE
Q 019006 169 LWDMRQRGAIQTFPD---KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDG-SYLLT 243 (347)
Q Consensus 169 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~-~~l~t 243 (347)
+-|+.+...-..+.. ...+..+.|+.+...++.+..=|...+||++++.. ...+..|...|++|+++|-. .+|||
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 999986543333322 24567788888888888888888999999998764 45566788899999999964 57899
Q ss_pred EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC----CceeeEEecCCc-
Q 019006 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT----SRRILYKLPGHT- 318 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~----~~~~~~~~~~h~- 318 (347)
+|.|++.+|||+|.........-.... +...|.++.|||++..|+|.+.|..|+|||.. .-+....+. |.
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~----HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLP----HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceeccc----ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 999999999999976544322111222 24578899999999889999999999999983 223333332 22
Q ss_pred -----cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 319 -----GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 319 -----~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
-.....+|+|+..+++.+-.-..|-|+|
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 1356778999999999888766666554
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=160.25 Aligned_cols=210 Identities=20% Similarity=0.414 Sum_probs=158.0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eee--eccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI--KKM--AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
.+++|.+.|++++|+.||++|+|++.|+.|++|++.+.... +.+ ....+....+.|.++-..++++.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 57899999999999999999999999999999998764321 011 01112334567777777788888888899999
Q ss_pred eCCCCCc----ee-------ecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC
Q 019006 171 DMRQRGA----IQ-------TFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD 237 (347)
Q Consensus 171 d~~~~~~----~~-------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~ 237 (347)
-+..+.. .. .++ +...+..+.....+.++++++.|.+|.+|+++ |+.+..+...+..-+..+.+|+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 7643221 10 011 22345667777778899999999999999998 8888877766666777889999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 238 GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 238 ~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
|+++++++----+++|.+- |..||.+ ..-..++.+.||
T Consensus 240 GRFia~~gFTpDVkVwE~~---------------------------f~kdG~f---------------qev~rvf~LkGH 277 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPI---------------------------FTKDGTF---------------QEVKRVFSLKGH 277 (420)
T ss_pred CcEEEEecCCCCceEEEEE---------------------------eccCcch---------------hhhhhhheeccc
Confidence 9999999987778888631 2233321 122334578899
Q ss_pred ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 318 TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 318 ~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
...|..++|+++...++|+|.||+++|||.
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 999999999999999999999999999984
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.8e-19 Score=162.09 Aligned_cols=286 Identities=35% Similarity=0.646 Sum_probs=226.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEE-cCCCC-EEEEecC-CCeEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHW-TTDGS-QIISASP-DKTLRAW 127 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~s~~~-dg~i~iw 127 (347)
.+.+|...+..+.|.+.+..++.++.|+.+.+|+..........+.++. ..+..+.+ ++++. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 4668999999999999999999999999999999875542445555543 36777777 78777 5555444 9999999
Q ss_pred ECCC-CceeeeeeccCcceeEeecCCCCCCEEEEEcC-CCceEEEeCCCCCceeecC-CCCceEEEEEcCCCC-eEEEEe
Q 019006 128 DVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASD-KIYTGG 203 (347)
Q Consensus 128 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~ 203 (347)
+... ......+..|...+..+.+.+.+. .+++++. |+.+++|++.....+..+. +...+.+++++|++. .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9987 677788888999898888888775 6666675 9999999999877666665 467899999999888 455559
Q ss_pred cCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 204 IDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
.|+.|++||...+.... .+..|.... ...|+|++.++++++.|+.+++||.+.... ....+..| ...+..+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~----~~~v~~~ 290 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGH----SSSVLSV 290 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---EEEEEecC----CccEEEE
Confidence 99999999988777777 688887764 348999998999999999999999985432 22333233 4578888
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEec--CCccCeeeEEEcCCC-CEEEEe-cCCCcEEeecC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP--GHTGSVNESVFHATE-PVIGSC-SSDKQIYLGEI 347 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~-~~l~s~-s~D~~i~i~~~ 347 (347)
.|+|++..+++++.|+.+.+||........... .|...+..+.| +.. ..+..+ ..|+.+.+|++
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeec
Confidence 999999999889999999999998887776665 88888999999 533 455555 68888888864
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.1e-21 Score=162.65 Aligned_cols=273 Identities=15% Similarity=0.294 Sum_probs=191.4
Q ss_pred EEEECCCCCeEEEeeCCCc-----EEEEeccCCCeeeEEEeCcc----cceeEEEEcC-------CCCEEEEecCCCeEE
Q 019006 62 TMKFNPAGTVIASGSHDRD-----IFLWHVHGDCKNFMVLKGHK----NAILDLHWTT-------DGSQIISASPDKTLR 125 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~-----v~~w~~~~~~~~~~~~~~h~----~~v~~~~~~~-------~~~~l~s~~~dg~i~ 125 (347)
.+..-|..++++++-.+.. +++|+-.. ..+. -.|. ..-.|++|.. -|+++|.|..|..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e--~nlY--vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE--ENLY--VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC--ccee--EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 4455576777777655433 45555422 1211 1121 1225666753 267999999999999
Q ss_pred EEECCCCcee---------------------eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-C
Q 019006 126 AWDVETGKQI---------------------KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-D 183 (347)
Q Consensus 126 iwd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~ 183 (347)
|||+.--..+ .....|...|..++++.....+|++|+.|.+|++||+.++++...+. +
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 9997521100 01124666666777777778899999999999999999999999998 4
Q ss_pred CCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCC
Q 019006 184 KYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 184 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
..+|.++.|+|.. ..+++|+.|++|.++|.|.. .....++ -.+.|..++|.|.. ..++++..||+++-+|+|..
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-- 362 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-- 362 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCC--
Confidence 5789999999874 47889999999999999942 2122222 13468899999865 46777788999999999964
Q ss_pred cCceeEEEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCc---cCeeeEEEcCCCC-EEEE
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHT---GSVNESVFHATEP-VIGS 335 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~-~l~s 335 (347)
+.++..+..|. ..|..+++++.- .+|+++|.|+.|++|++..-.... ...|. +...++++.|+-. +||.
T Consensus 363 -~~~vwt~~AHd----~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-v~~~~~~~~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 363 -GKPVWTLKAHD----DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-VKEHSFKLGRLHCFALDPDVAFTLAF 436 (463)
T ss_pred -CCceeEEEecc----CCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-cccccccccceeecccCCCcceEEEe
Confidence 36677777774 578888888764 578899999999999876533211 11222 2355667777764 7788
Q ss_pred ecCCCcEEeecC
Q 019006 336 CSSDKQIYLGEI 347 (347)
Q Consensus 336 ~s~D~~i~i~~~ 347 (347)
+|..+.++|||+
T Consensus 437 GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 437 GGEKAVLRVWDI 448 (463)
T ss_pred cCccceEEEeec
Confidence 888889999985
No 154
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.1e-21 Score=158.23 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=210.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC----C-CeeeEEE-eCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG----D-CKNFMVL-KGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~----~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
+.+|.+-|+++.|+.++++||+|+.|..+++|++.. . .+++... ..|...|.+++|....+.+++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 679999999999999999999999999999999852 1 2333222 235578999999999999999999999999
Q ss_pred EECCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec---CCCCceEEEEEcCCCC-eE
Q 019006 127 WDVETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF---PDKYQITAVSFSDASD-KI 199 (347)
Q Consensus 127 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~v~~~~~~~~~~-~l 199 (347)
.|+++.+.+..+... .+.|..+..+|. .+.+++.+.++.+.+||.+... .+..+ ........+.|+|... .+
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999988766554322 236676777776 4678899999999999998665 33222 2334578889998765 56
Q ss_pred EEEecCCcEEEEeCCCCceE-E------EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 200 YTGGIDNDVKVWDLRKGEVS-M------TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~-~------~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
++.+..+-+-+||.+..... . .++.....-.++.|+|+|+.+++.-....-.+||+... +|...-..|.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~----R~~V~k~D~N 286 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ----RCFVLKSDHN 286 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc----cceeEeccCC
Confidence 67888899999999865321 1 12221222367889999999988776666678887632 2221111111
Q ss_pred c-cc--ccceEEEEECCCCCEEEEeeCCCeEEEEeCCC----------ce-------------eeEEecCCccCeeeEEE
Q 019006 273 H-NF--EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS----------RR-------------ILYKLPGHTGSVNESVF 326 (347)
Q Consensus 273 ~-~~--~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~----------~~-------------~~~~~~~h~~~v~~~~~ 326 (347)
. .+ ...+.+|+|--|. .+++||.+=.|++|.+.. |. .+..++||..-++.|.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 1 11 1345667776554 499999999999997532 11 23468899999999999
Q ss_pred cCCCCEEEEecCCCcEEeec
Q 019006 327 HATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~ 346 (347)
+|...+|.+.|-...++||-
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 99999999999999999983
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.8e-22 Score=165.93 Aligned_cols=231 Identities=15% Similarity=0.274 Sum_probs=188.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCC--CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVET--GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
.+.|+++.|+|....|++|+.|++++||.++. ...+..+.....++..+++.+.+...+++++.......||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998764 3456666666778888999998877899999999999999987765
Q ss_pred eeecCC----CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 178 IQTFPD----KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 178 ~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
.+.-+. ...+....+++++++++..+..|.|.+-...+++.+.+++- .+.|..++|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 443221 22466788899999999999999999999988888877764 4679999999999999999999999999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC------ceeeEEecCCccCeeeEEEc
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS------RRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~ 327 (347)
|++.. .++..+..... ..-.+++.+++|+|||+||..|.|.|||..+ .+++..+..-...|+.+.|+
T Consensus 372 nl~~~----~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 372 NLRQN----SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ecCCc----ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99843 45544433221 1345677889999999999999999999644 45677777778899999999
Q ss_pred CCCCEEEEecC
Q 019006 328 ATEPVIGSCSS 338 (347)
Q Consensus 328 ~~~~~l~s~s~ 338 (347)
++.++||.||.
T Consensus 445 ~d~qiLAiaS~ 455 (514)
T KOG2055|consen 445 HDAQILAIASR 455 (514)
T ss_pred cchhhhhhhhh
Confidence 99999998884
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-21 Score=169.77 Aligned_cols=242 Identities=20% Similarity=0.268 Sum_probs=187.0
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
..++||++.|.++...|.|..|++|+.||+|+||.+.++++++.+... +.|.+++|.+....-+++.....++.+-+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 467899999999999999999999999999999999999999887643 4677778877655444444444444444321
Q ss_pred CC--------------------------------------CceeecCCCCceEEEEEcCCCCeEEEEecC---CcEEEEe
Q 019006 174 QR--------------------------------------GAIQTFPDKYQITAVSFSDASDKIYTGGID---NDVKVWD 212 (347)
Q Consensus 174 ~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd 212 (347)
-+ .....+.+...|..+.|+..|.+|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 011223345568899999999999987654 3688999
Q ss_pred CCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 213 LRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
+........++-..+.|.++.|+|...+|++++. ..|++||+... ..++.+.. ....+..++.+|.|..|+
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq----elvKkL~t----g~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ----ELVKKLLT----GSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH----HHHHHHhc----CCeeeeeeeecCCCCeEE
Confidence 8766655555545677999999999999998885 47999998642 22333221 134688899999999999
Q ss_pred EeeCCCeEEEEeCCCc-eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 293 AGSSDRMVYIWDTTSR-RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
.|+.|+.+..||+.-. +..++++.|+..+.+|+||+.-+++++|+.||++.|+
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999999865 4556788999999999999999999999999999886
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=165.99 Aligned_cols=243 Identities=14% Similarity=0.219 Sum_probs=191.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK-KMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
..+|++|+++...+.||.+-.||.|-+|++..+-... .+.+ ....+..+++.+. ..|++.+-+|.|.-||+.+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCce
Confidence 4689999999999999999999999999998764433 2333 3456777888743 3578889999999999999888
Q ss_pred eeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE--ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 178 IQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 178 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
...+.. ...+.+++.+|.+..++.|+.||.++.++...++.... +.-.++.|.+++|+|++..+++|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 777654 56899999999999999999999888888776654432 333457899999999999999999999999999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
.............+.+....-+.-++++.|-. ...|++|.+.|.|.+||...+.+++.+..|.+.|.+++-.+++..+.
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 87532211000001111111123577777764 45899999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEee
Q 019006 335 SCSSDKQIYLG 345 (347)
Q Consensus 335 s~s~D~~i~i~ 345 (347)
++|.|+.|.-+
T Consensus 262 saGvd~~ii~~ 272 (691)
T KOG2048|consen 262 SAGVDPKIIQY 272 (691)
T ss_pred EccCCCceEEE
Confidence 99999997654
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.1e-22 Score=183.24 Aligned_cols=244 Identities=20% Similarity=0.366 Sum_probs=189.9
Q ss_pred ccEEEEEECCCCCe----EEEeeCCCcEEEEeccCC-----CeeeEEEeCcccceeEEEEcCCCC-EEEEecCCCeEEEE
Q 019006 58 SAVYTMKFNPAGTV----IASGSHDRDIFLWHVHGD-----CKNFMVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAW 127 (347)
Q Consensus 58 ~~V~~v~~~~~~~~----l~s~~~d~~v~~w~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw 127 (347)
...+.++|.+.|.. ||.|..||.|.+|+.... ...+.....|++.|..+.|++... .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45789999988765 899999999999997531 112345678999999999999654 99999999999999
Q ss_pred ECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC---CceEEEEEcCCCC-eEEE
Q 019006 128 DVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK---YQITAVSFSDASD-KIYT 201 (347)
Q Consensus 128 d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~ 201 (347)
|++.-+.-.... .....|..+.|+.....+|++++.+|++.|||++..+.+-.+... ..+..+.|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998744322221 134567778888777788999999999999999988777665433 4588999999864 5666
Q ss_pred EecCC---cEEEEeCCCC-ceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 202 GGIDN---DVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 202 ~~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
++.|. .|.+||+|.. .....+++|+..|.+|.|++.+ .+|++++.|+.|.+|+.... ..+..+... .
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~----~ 296 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG----EVLGELPAQ----G 296 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc----eEeeecCCC----C
Confidence 66554 5999999865 3556778999999999999966 89999999999999998753 233333321 2
Q ss_pred cceEEEEECCCCC-EEEEeeCCCeEEEEeCCCce
Q 019006 277 KNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 277 ~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~~ 309 (347)
+.+..+.|.|... .+++++-||.|.||.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 5688899999876 78889999999999886543
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=6e-21 Score=166.51 Aligned_cols=271 Identities=19% Similarity=0.332 Sum_probs=184.4
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd 128 (347)
.....|..+|+.+.|.|....|++++.|.++++||+.+.. .-...+.||...|.+++|.+.. ..+++|+.||.+.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 3456899999999999966789999999999999996431 1123478999999999999954 5788999999999999
Q ss_pred CCCCce--e-------------------------eeeeccCcceeE---eecCCCCCCEEEEEcC-CCceEEEeCCCCCc
Q 019006 129 VETGKQ--I-------------------------KKMAEHNSFVNS---CCPSRRGPPLVVSGSD-DGTAKLWDMRQRGA 177 (347)
Q Consensus 129 ~~~~~~--~-------------------------~~~~~~~~~v~~---~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~ 177 (347)
+..... . ..-..+...+.. +.+..+. ..|++++. |+.|++||+++...
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc
Confidence 863220 0 000111111222 2233333 45666665 99999999986543
Q ss_pred eee--------cCC----CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc--eEEEecCCCCc--eeEEEECCCCCEE
Q 019006 178 IQT--------FPD----KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDM--ITGMSLSPDGSYL 241 (347)
Q Consensus 178 ~~~--------~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~v~~~~~~~~l 241 (347)
... ++. ...+.++..+..|.++++.+.|+.|+.||+++.. .+..+.++... -..-..+|++.++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 322 111 2357888888888999888889999999997643 33444443221 1122458999999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCce-----------
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRR----------- 309 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~----------- 309 (347)
++|+.|....+|.+...+.. ...+.+|. ..+..++|.|.. .-++++++|..+++|++..+-
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~---~~~l~Ght----~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~ 405 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAP---PALLLGHT----REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSI 405 (720)
T ss_pred eccCCCcceeeeeecCccCC---hhhhhCcc----eEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchh
Confidence 99999999999998754322 23345553 468888887742 345666999999999985431
Q ss_pred ---eeEEecCCccCeeeEEEcCC
Q 019006 310 ---ILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 310 ---~~~~~~~h~~~v~~~~~~~~ 329 (347)
...++++|...+..+.++-.
T Consensus 406 v~~~~~rfk~~~p~~~nv~ss~~ 428 (720)
T KOG0321|consen 406 VYEYSRRFKGHLPQVLNVNSSLR 428 (720)
T ss_pred hhhhhhhhhcccccccccccccc
Confidence 12345677666666655543
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.9e-21 Score=156.91 Aligned_cols=206 Identities=19% Similarity=0.322 Sum_probs=159.5
Q ss_pred eCcccceeEEEEcCCC--CEEEEecCCCeEEEEECCC----------------CceeeeeeccCcceeEeecCCCCCCEE
Q 019006 97 KGHKNAILDLHWTTDG--SQIISASPDKTLRAWDVET----------------GKQIKKMAEHNSFVNSCCPSRRGPPLV 158 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 158 (347)
.+|.+.+..+.-++-+ .+.++=+..|.|+||++.. .+.+.++..|...-+.+++++.....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566777776666544 4555667889999999752 123556667777777788887655568
Q ss_pred EEEcCCCceEEEeCCCCCcee----ecCCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCc--eEEEecCCCCceeE
Q 019006 159 VSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITG 231 (347)
Q Consensus 159 ~s~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~ 231 (347)
++|..-+.|++|...++.-.. ...|...|-.+.|+|... .|++++.||.|+|||+|.+. .....+.|...|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999987754221 123556788999999754 77899999999999999873 33445889999999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCC
Q 019006 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~ 307 (347)
|+|+....+||+|+.||+++|||+|.++.. .++..++.| ..+|.++.|+|. ...|++++.|.+|.+||+.-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~H----k~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYH----KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEec----cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999998889999999999999999987654 566677766 367999999995 56788899999999999854
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=3e-18 Score=154.17 Aligned_cols=287 Identities=36% Similarity=0.650 Sum_probs=222.6
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeC-CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC-EEEEecCCCeEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSH-DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS-QIISASPDKTLR 125 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~-d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~ 125 (347)
.....+.+|...|..++|+|++..+++++. |+.+++|+... ......+.+|...|.+++|+|++. .+++++.|+.++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 344567899999999999999999999886 99999999864 345567778999999999999998 556669999999
Q ss_pred EEECCCCceee-eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeec-CCCCceEEEEEcCCCCeEEEE
Q 019006 126 AWDVETGKQIK-KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTF-PDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 126 iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~ 202 (347)
+||...+.... .+..|.... ...+.+.+ .++++++.|+.+++|+.+.... ...+ .+...+.++.|.|++..++++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 99988777766 566666653 32555555 6778999999999999986654 3333 446789999999988888889
Q ss_pred ecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
+.|+.+.+||........... .|...+..+.|.+++..++.+ ..|+.+.+|++.... ........ ..+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~-----~~~ 373 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK----PLKTLEGH-----SNV 373 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc----eeEEecCC-----ceE
Confidence 888889999998877666554 777778999994332556655 678899999987532 11111111 116
Q ss_pred EEEEECCCCCEEEE-eeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 280 LKCGWSPDGSKVTA-GSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 280 ~~~~~s~~g~~l~s-gs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.+++ ...++. +..++.+.+|+............+...+....+.+++..+++++.+.++.+|++
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 7788888 544444 788999999999998887777665478899999999999999999999999874
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.9e-21 Score=166.35 Aligned_cols=263 Identities=17% Similarity=0.286 Sum_probs=191.9
Q ss_pred CcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-------CCeeeEEEeCcccceeEEEEcCCCCEEEEec
Q 019006 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-------DCKNFMVLKGHKNAILDLHWTTDGSQIISAS 119 (347)
Q Consensus 47 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 119 (347)
.++.+++..|...|+++.|+|....|++++.||++.+|++.. ..+++..+.+|.++|.|++..+++.++++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 345567889999999999999999999999999999999931 2345678999999999999999999999999
Q ss_pred CCCeEEEEECC------CC----ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC---CCc
Q 019006 120 PDKTLRAWDVE------TG----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD---KYQ 186 (347)
Q Consensus 120 ~dg~i~iwd~~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~ 186 (347)
.||+|+.|++- +. .....+.+|...++.++++... ..+++++.||+++.|+.....+ .++.. ...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 99999999543 11 1234567888989888877664 4588999999999999876665 23321 223
Q ss_pred eEEEEEcCCCCe-EEEEecCCcEEEEeCCCCceEEEecC-------CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 187 ITAVSFSDASDK-IYTGGIDNDVKVWDLRKGEVSMTLQG-------HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 187 v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..++.+...... .++...-+.--+++.........+.. ....++-+.++|.+...+++..|+.|+++|....
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 345555433322 22222222223333333332222221 1234677889999999999999999999998754
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG 319 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~ 319 (347)
.+ +.....| ...+.++++.|+|.+|++|+.||.+++|.+..+.++.....|..
T Consensus 522 ~~----l~s~~a~----~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 522 KI----LHSMVAH----KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cc----chheeec----cceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 33 2222222 35788999999999999999999999999988888777766653
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=2.6e-20 Score=148.21 Aligned_cols=273 Identities=18% Similarity=0.324 Sum_probs=184.8
Q ss_pred EecCccccEEEEEECCCC-CeEEEeeCC-------CcEEEEeccCCCee--------eEEEe-CcccceeEEEEcCCCCE
Q 019006 52 LLTGHQSAVYTMKFNPAG-TVIASGSHD-------RDIFLWHVHGDCKN--------FMVLK-GHKNAILDLHWTTDGSQ 114 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~-~~l~s~~~d-------~~v~~w~~~~~~~~--------~~~~~-~h~~~v~~~~~~~~~~~ 114 (347)
.|.-|.++|+.++-+|.. ++|+|+-.+ -.+-||.+..+... +..+. .+-+.|.++.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 456788999999999955 566766542 23678998644222 11222 34568999999999999
Q ss_pred EEEecCCCeEEEEECCCCce-eeeeec-----cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCc
Q 019006 115 IISASPDKTLRAWDVETGKQ-IKKMAE-----HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQ 186 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~ 186 (347)
+++-. |..|.+|+++.+.. +..+.. +.....+-.++|...-.-+....|+++..||+|+......+. |...
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcce
Confidence 98775 78899999987765 322221 122233344554222223445678999999999887776664 3457
Q ss_pred eEEEEEcCCCC-eEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCc
Q 019006 187 ITAVSFSDASD-KIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 187 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
+..+.|+|..+ +|++++.||.|++||.|..+ .+.++.+|...|.++.|+|. .+.++++|.|..|.+|..........
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 99999999866 56789999999999998654 67789999999999999995 67888999999999998654322111
Q ss_pred eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQI 342 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i 342 (347)
.. ..+... + .++.. ....++ -+..+ .+.++..|+.+|.+++|+.-.+ ++||-|.||.+
T Consensus 297 i~---~~~des-e--------~e~~d------seer~k--pL~dg-~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 297 IE---FEDDES-E--------SEDED------SEERVK--PLQDG-QLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred cc---cccccc-c--------Ccchh------hHHhcc--ccccc-ccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 00 000000 0 00000 000111 12222 3557889999999999999888 56788999999
Q ss_pred Eeec
Q 019006 343 YLGE 346 (347)
Q Consensus 343 ~i~~ 346 (347)
.|-.
T Consensus 356 iIs~ 359 (370)
T KOG1007|consen 356 IISS 359 (370)
T ss_pred Eeec
Confidence 8754
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1e-18 Score=152.87 Aligned_cols=273 Identities=11% Similarity=0.218 Sum_probs=176.9
Q ss_pred EEEeeCCCcEEEEeccCCC--eeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEECCC-Cce--eeeeeccCcce
Q 019006 72 IASGSHDRDIFLWHVHGDC--KNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDVET-GKQ--IKKMAEHNSFV 145 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v 145 (347)
+++...|+.|++|++.... .....+. +......++++|++++|+.++ .++.|.+|+++. ++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 4455778999999995322 2223332 335567889999999887664 578899999863 332 22221 22234
Q ss_pred eEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEE
Q 019006 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 220 (347)
..+.+++++..++++...++.+.+|++.+.. .+..++.......++++|+++++++++ .++.|.+||+.+.....
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 4567777776666666668999999986432 222333334567788999999887655 56899999997632211
Q ss_pred -------EecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEecccccc--ccceEEEEECCCCCE
Q 019006 221 -------TLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQHNF--EKNLLKCGWSPDGSK 290 (347)
Q Consensus 221 -------~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~ 290 (347)
.... ......+.|+|++++++++.. ++.|.+||+.........+..+....... ......+.++|+|++
T Consensus 163 ~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 1111 233578999999999988765 89999999974211222233332221111 122345789999999
Q ss_pred EEEee-CCCeEEEEeCCCceeeEEecCC---ccCeeeEEEcCCCCEEEEecC-CCcEEeecC
Q 019006 291 VTAGS-SDRMVYIWDTTSRRILYKLPGH---TGSVNESVFHATEPVIGSCSS-DKQIYLGEI 347 (347)
Q Consensus 291 l~sgs-~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~-D~~i~i~~~ 347 (347)
|+++. .++.|.+|++.......++.+| ......+.|+|++++|+.+.. +++|.+|++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 99885 4789999998654321222222 134678999999998887765 899999863
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.8e-20 Score=163.67 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=99.8
Q ss_pred eeEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCCe-ee---EEEeCc-ccceeEEEEcCCCCEEEEecCCCe
Q 019006 50 IMLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCK-NF---MVLKGH-KNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~-~~---~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
+-.+.+|...|+.+.|+|- ..+||+|+.|..|+||.+..... .+ ....+| .-.|.++.|+|..+-|+..+..|.
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 4568899999999999994 56899999999999999962211 11 122344 346789999997777777778899
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
++|||+.+++.+..+..|...|.+..++.++ .++++...|+.|+|||.+
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCc
Confidence 9999999999999999999999988887765 688888999999999965
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-19 Score=165.41 Aligned_cols=285 Identities=20% Similarity=0.318 Sum_probs=198.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC---cccceeEEEEcC--CCCEEEEecCCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG---HKNAILDLHWTT--DGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~ 129 (347)
+....-..+.|+|-.+.+++++..-.|.+||.... +.+..+.. ....|+.+.+-. |..++++|+.||.||||+-
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 33345678899999999999998889999998643 33333322 234688888754 4568999999999999963
Q ss_pred C-C----CceeeeeeccC------ccee-EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC--ceEEEEEcC-
Q 019006 130 E-T----GKQIKKMAEHN------SFVN-SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY--QITAVSFSD- 194 (347)
Q Consensus 130 ~-~----~~~~~~~~~~~------~~v~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~- 194 (347)
- + .+.+..+..-. .... -+.+....+.++ +++.-..|+|||......+..++... .++++.-+-
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 2 2 12222221110 0011 112222334444 44557899999999988888877543 466665543
Q ss_pred CCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCc--eeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDM--ITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
.++.+++|..||.|++||.|... .+.....|++. |..+.+.+.|- .|++|+.||.|++||+|.. +........
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceee
Confidence 36889999999999999988643 45567778877 99999988665 4999999999999999963 222222211
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-------ccCeeeEEEcCCCCEEEEecCCCc
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-------TGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
.|. .+-....++..+++...+|+|+. +.|.||++...+ +..++.+ .+++.+++|||..-++|.|+.|.+
T Consensus 1299 -~~~-~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1299 -AHW-EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred -ecc-ccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence 111 11124788889999999999999 899999986433 3333332 357899999999999999999999
Q ss_pred EEeec
Q 019006 342 IYLGE 346 (347)
Q Consensus 342 i~i~~ 346 (347)
|.|..
T Consensus 1375 V~iYs 1379 (1387)
T KOG1517|consen 1375 VSIYS 1379 (1387)
T ss_pred EEEee
Confidence 98864
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.8e-19 Score=149.53 Aligned_cols=275 Identities=20% Similarity=0.301 Sum_probs=194.7
Q ss_pred ccEEEEEECCCCC-eEEEeeCCCcEEEEeccCC--------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 58 SAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGD--------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 58 ~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.+|+.+.|.++.. .||||+.|..|++|.+... ......+..|..+|+.+.|+|+|+.|++|+.+|.+.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5799999998776 9999999999999987521 112345788999999999999999999999999999997
Q ss_pred CC--------C--------CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEE
Q 019006 129 VE--------T--------GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVS 191 (347)
Q Consensus 129 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 191 (347)
.. + ......+..|...+..+++.+++ .++++++.|..+++||+..++....+. |..-+..++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 55 2 01123345677788888888775 578899999999999999998887764 556789999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCceEEEe-----c--------------CCC----CceeEEEECCCCCEEEEEcC--
Q 019006 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-----Q--------------GHQ----DMITGMSLSPDGSYLLTNGM-- 246 (347)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~--------------~~~----~~i~~v~~~~~~~~l~t~~~-- 246 (347)
|+|.++++++-+.|...+.+.+......... + -|. .....++|+|+|..|++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 9999999999998887777765432221110 0 011 22455789999999887542
Q ss_pred --C-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC------------------CCCCEEEEeeCCCeEE
Q 019006 247 --D-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS------------------PDGSKVTAGSSDRMVY 301 (347)
Q Consensus 247 --d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------------------~~g~~l~sgs~dg~i~ 301 (347)
. +..++++.... .++...++. .......+.|+ |-+-.+|.++.+ .|+
T Consensus 253 ~~g~~~~~n~tYvfsrk~l---~rP~~~lp~----~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svy 324 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDL---KRPAARLPS----PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVY 324 (434)
T ss_pred eeCCceeeceeEeeccccc---cCceeecCC----CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEE
Confidence 1 23345543321 111111111 11122222222 233345556654 899
Q ss_pred EEeCCCceeeEEec-CCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 302 IWDTTSRRILYKLP-GHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 302 vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
+||.++..+++... -|=..|++++|++++..|+-.|.||-
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 99999988877654 36678999999999999999999985
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=147.70 Aligned_cols=276 Identities=14% Similarity=0.232 Sum_probs=185.6
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEECCCCceeeee--eccCcce
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWDVETGKQIKKM--AEHNSFV 145 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v 145 (347)
..+|++-..|.|++||... ...+..+++|...+..+.|.. ....+.+|+.||+|++||++.......+ ..+.+..
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 5688888999999999864 556778899999999999976 4567899999999999999876554333 3343223
Q ss_pred eEeecCCCCCCEEEEEc----CCCceEEEeCCCCCc-eeec--CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCc
Q 019006 146 NSCCPSRRGPPLVVSGS----DDGTAKLWDMRQRGA-IQTF--PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGE 217 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~----~d~~i~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 217 (347)
..+........++++|+ .+-.+.+||+|..+. +..+ .|...|+++.|+|.. +.|++|+.||.|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 22222222345666664 356789999997765 4443 466789999999975 478899999999999987542
Q ss_pred ---eEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc----cccccceEEEEECCCCC
Q 019006 218 ---VSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ----HNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 218 ---~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~ 289 (347)
.+.....|...|..+.|...+ +.+.+-+...+..+|++....+....-....... ......+..+-...++.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 122223456679999998765 4588888899999999976442211100000000 00011222222233555
Q ss_pred EEEEeeC-CCeEEEEeC---CCce---eeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSS-DRMVYIWDT---TSRR---ILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~-dg~i~vwd~---~~~~---~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.++.++. -|...++-+ .++. .+..+.+ |..-|.++.|...+.++.|||+||.+.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 6555544 555555533 3333 3345555 667789999999999999999999999997
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-19 Score=138.90 Aligned_cols=246 Identities=15% Similarity=0.272 Sum_probs=172.0
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCC---------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
..|++-+++|.+++|+.|..+|.|.+..+..- .......++|..+|..++|. .++|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35777789999999999999999999987421 12234568999999999998 44677665 59999997
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.+..... .++-++|.+....... ...--+|+++...|..+-++.++.|+.+
T Consensus 88 W~E~~es----------------------------~~~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~ 138 (325)
T KOG0649|consen 88 WNEEEES----------------------------LATKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVI 138 (325)
T ss_pred ehhhhhh----------------------------ccchhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEE
Confidence 6532210 1122334432211110 1112358899999999988888899999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc------cccceEEE
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN------FEKNLLKC 282 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 282 (347)
+.||+++|+..+++.+|++.|.++.-......+++|+.||++++||.++ .++++.+....+. ....| .
T Consensus 139 y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt----~k~v~~ie~yk~~~~lRp~~g~wi--g 212 (325)
T KOG0649|consen 139 YQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT----QKHVSMIEPYKNPNLLRPDWGKWI--G 212 (325)
T ss_pred EEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc----cceeEEeccccChhhcCcccCcee--E
Confidence 9999999999999999999999999877778899999999999999985 3455555433221 11122 3
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
+..-+..+|++|+.- .+.+|++++.+....++ -...+-.+.|..+ .+.++|....|.-|
T Consensus 213 ala~~edWlvCGgGp-~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 213 ALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred EEeccCceEEecCCC-ceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeee
Confidence 344567799988754 79999999888766553 2345666777554 45556544444433
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.4e-20 Score=155.91 Aligned_cols=219 Identities=17% Similarity=0.288 Sum_probs=175.3
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+|++......++++||..+.|+|||+.. ......+++|++.|+++.++..+.+|++++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 4555555568999999999999999963 234456899999999999999999999999999999999998877767765
Q ss_pred c-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec--CCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCC
Q 019006 141 H-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 141 ~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 216 (347)
. +..+.-+.+++....+|.+++++|.+.+||+....++..+ .|..+...++|+|..+ .|++.+.|.+|++||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 5 4455567778888889999999999999999988777655 3556778899999866 5668899999999999876
Q ss_pred ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 217 EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
.....+. ...+...++|.++|.+|+.|...|.|..||+|.. ..++..+..| ...|.+++|-|.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~---k~Pv~v~sah----~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST---KAPVAVRSAH----DASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccC---CCCceEeeec----ccceeEEEeeecc
Confidence 5544443 3457899999999999999999999999999863 2345555554 3458888886653
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.8e-19 Score=149.09 Aligned_cols=209 Identities=21% Similarity=0.379 Sum_probs=167.9
Q ss_pred EEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCC-------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 94 MVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETG-------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
..+.||+++|..++|.| ++..|++||.|.+|.||.+-.+ +.+..+.+|...|..+.+++...+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34679999999999999 5667999999999999997543 235677889999999999999989999999999
Q ss_pred ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCc-eeEEEECCCCCEEEEE
Q 019006 166 TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPDGSYLLTN 244 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~~~~l~t~ 244 (347)
+|.+||+.++..+-++.|...|.++.|+.+|..+++.+.|.+|||||.++++.+.+-.+|.+. -..+.|-.++. ++|.
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTT 233 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeee
Confidence 999999999998888888899999999999999999999999999999999998888778652 33456777787 5555
Q ss_pred c----CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEEEEeCCCce
Q 019006 245 G----MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 245 ~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~vwd~~~~~ 309 (347)
| .+..+.+||....+... ....+.. ...+.---|.+|.+.+. +|-.|+.|+.|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~-~~~elDt-----SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPI-ALQELDT-----SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcc-eeEEecc-----CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4 57799999987654331 2222221 22344445789988886 56689999999987655
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=6.7e-19 Score=146.25 Aligned_cols=251 Identities=22% Similarity=0.391 Sum_probs=176.6
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEecc--------C-----C--CeeeEEEeCcccceeEEEEcCCCCEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH--------G-----D--CKNFMVLKGHKNAILDLHWTTDGSQI 115 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~--------~-----~--~~~~~~~~~h~~~v~~~~~~~~~~~l 115 (347)
..|..|+.+|+++.|+|+|.+||||+.+|.|.+|... + . +...+.+.+|...|..++|+|++.++
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence 4578999999999999999999999999999999875 1 0 22345678999999999999999999
Q ss_pred EEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-------------
Q 019006 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP------------- 182 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~------------- 182 (347)
++++.|..+++||+..|.....+..|...+..+++.+.+. ++++-+.|...+.+.+...+.++...
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred eeeeccceEEEEEeccceeEeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 9999999999999999999999999999999998887654 56677777766666554332221111
Q ss_pred -------C----CCceEEEEEcCCCCeEEEEec----C-----CcEEEEeCCC-CceEEEecCCCCceeEEEECC-----
Q 019006 183 -------D----KYQITAVSFSDASDKIYTGGI----D-----NDVKVWDLRK-GEVSMTLQGHQDMITGMSLSP----- 236 (347)
Q Consensus 183 -------~----~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~----- 236 (347)
+ +.-...++|+|+|..+++... . +..++|+-.. .++...+..-..+...+.|+|
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 1 112455788999988876431 1 2345664321 123334444444444444433
Q ss_pred -------------CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 237 -------------DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 237 -------------~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
.+..+|.+. .+.+.+||.....|.. ..... +-..+..++|++||..|+..|.||...+-
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~----~v~ni---hy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLA----VVDNI---HYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred ccccccccccccccceEEEEee-cceEEEeccccccceE----EEeee---eeeeecceeecCCCcEEEEeccCCceEEE
Confidence 222344444 4589999987543321 11111 12468899999999999999999998888
Q ss_pred eCCCcee
Q 019006 304 DTTSRRI 310 (347)
Q Consensus 304 d~~~~~~ 310 (347)
..+..++
T Consensus 370 tfe~~el 376 (434)
T KOG1009|consen 370 TFEPWEL 376 (434)
T ss_pred EEcchhc
Confidence 7766554
No 173
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.6e-19 Score=141.23 Aligned_cols=235 Identities=16% Similarity=0.237 Sum_probs=172.6
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP 182 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~ 182 (347)
..++.|++.|.+|+.|+.||.|.|||+.+...-+.+..|...+.++++++++. +|++++.|..|++||+..+.+.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEE
Confidence 57899999999999999999999999999888788889999999999998875 67899999999999999999999988
Q ss_pred CCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEEEecCC-----CCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 183 DKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 183 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
....|..+.|+|.....+.++ .+..-.+-++..++. ..+... +..-.+..|.+.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 888999999998765443332 333344444433221 111100 0111223588999999999999999999987
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------ee--eEEecC--CccCeeeEE
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR-------RI--LYKLPG--HTGSVNESV 325 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~-------~~--~~~~~~--h~~~v~~~~ 325 (347)
+. .++..++-.. ...|..+.++..|++|+.-+.|+.||.|+...- ++ .+++.. ....=..+.
T Consensus 184 t~----e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 184 TL----ECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred hh----eeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 53 4444443322 245778889999999999999999999987521 11 122211 011225778
Q ss_pred EcCCCCEEEEec-CCCcEEeec
Q 019006 326 FHATEPVIGSCS-SDKQIYLGE 346 (347)
Q Consensus 326 ~~~~~~~l~s~s-~D~~i~i~~ 346 (347)
|+.++.++..++ ..+.+|||+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred ecCCccEEEeccccceeEEEEe
Confidence 999998776555 568899996
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=1.8e-18 Score=139.79 Aligned_cols=236 Identities=22% Similarity=0.404 Sum_probs=172.6
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCC-------ce-----eeeee-ccCcceeEeecC------CCCCCEEEEEcC
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETG-------KQ-----IKKMA-EHNSFVNSCCPS------RRGPPLVVSGSD 163 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~-----~~~~~-~~~~~v~~~~~~------~~~~~~~~s~~~ 163 (347)
...+.|+|||..|++-+.|..+++|++-.. .. ...+. .....|.++++. .+...++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 356789999999999999999999987321 00 01111 123345555553 233468889999
Q ss_pred CCceEEEeCCCCCceeecC---CC---CceEEEEEcCCCCeEEEEecCCcEEEEeC-CCCce--EEEe-----cCCCCce
Q 019006 164 DGTAKLWDMRQRGAIQTFP---DK---YQITAVSFSDASDKIYTGGIDNDVKVWDL-RKGEV--SMTL-----QGHQDMI 229 (347)
Q Consensus 164 d~~i~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~--~~~~-----~~~~~~i 229 (347)
+.-|++||.-+++....+. +. ....+++|+|||..|++|. .+.|++||+ |.|.. .+.. .+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999998887665543 22 2357899999999998765 568999998 65542 1211 2335678
Q ss_pred eEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC-CCeEEEEeCCC
Q 019006 230 TGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIWDTTS 307 (347)
Q Consensus 230 ~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vwd~~~ 307 (347)
.+++|+|... .++.++...++-|+.-.. ..++..+-+|. +.|+.+.|.++|+.|.+|+. |-.|..||++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~----~~pl~llggh~----gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDG----RRPLQLLGGHG----GGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCC----CCceeeecccC----CCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 9999999654 888999888888886553 23445555553 57899999999999999985 66899999975
Q ss_pred -ceeeEEecCCccCe---eeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 308 -RRILYKLPGHTGSV---NESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 308 -~~~~~~~~~h~~~v---~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+++.+..|.+.. .-....|++++||+++.||.|++||+
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 56778888887633 23455788999999999999999985
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-18 Score=138.32 Aligned_cols=219 Identities=17% Similarity=0.308 Sum_probs=146.8
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeeccCcceeEeecC-CCCCCEEEEEcCCCceEEE
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSCCPS-RRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~d~~i~iw 170 (347)
-.+|.+-|.++.|.+.|+++++|+.|++++|||.++.. +......|.+.+..+.+. |.-+..+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999975432 334455566666655442 3334566666677777776
Q ss_pred eCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC--CCEEEEEcCCC
Q 019006 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGMDC 248 (347)
Q Consensus 171 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~--~~~l~t~~~d~ 248 (347)
.-.... +. ..=+-| ....++......|+++.|.|. |-.|++++.||
T Consensus 89 EE~~~~----~~-----------------------~~~~~W-----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 89 EEQEKS----EE-----------------------AHGRRW-----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred eecccc----cc-----------------------ccccee-----EEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 532100 00 000011 122334445567999999984 77899999999
Q ss_pred cEEEEeCCCCCCcC--ceeEEEe---ccccccccceEEEEECCC---CCEEEEeeCC-----CeEEEEeCCCc----eee
Q 019006 249 KLCIWDMRPYAPQN--RCVKILE---GHQHNFEKNLLKCGWSPD---GSKVTAGSSD-----RMVYIWDTTSR----RIL 311 (347)
Q Consensus 249 ~i~~wd~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~s~~---g~~l~sgs~d-----g~i~vwd~~~~----~~~ 311 (347)
.++||+.-+..... .....+. ...........++.|+|. .++||.|+.+ +.++||..... ..+
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 99999865321110 1111111 011122346778889874 5789999876 57888876543 245
Q ss_pred EEecCCccCeeeEEEcCC----CCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTGSVNESVFHAT----EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~----~~~l~s~s~D~~i~i~~~ 347 (347)
.++++|..+|.+++|.|. .++||+++.|| |+||++
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 678999999999999997 36999999999 999975
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.6e-17 Score=136.63 Aligned_cols=232 Identities=15% Similarity=0.205 Sum_probs=168.8
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCce
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAI 178 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~ 178 (347)
..+..+.|..+...|..|+.|| -++|..+..............|....++. .+++..+.+ ..+++.+++.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456666888888888888888 56777665433222222233344444443 244444433 45899999988888
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC---CCCceeEEEECCCCCEEEEEc--CCCcEEEE
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG---HQDMITGMSLSPDGSYLLTNG--MDCKLCIW 253 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~t~~--~d~~i~~w 253 (347)
..+.....|.++.++. +.|++.-.+ .|+|||++.-+...++.. +...+.++++++.+.|++--+ ..|.|.+|
T Consensus 82 Ce~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 8777777899998875 445555544 499999999888776653 333455666666667887533 35899999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEecCCc--cCeeeEEEcCCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLPGHT--GSVNESVFHATE 330 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~ 330 (347)
|+.+. +.+..+..| ++.+-+++|+++|.+||++|..|+ ||||...+|+.+++++.-. ..|.+++|+|+.
T Consensus 159 d~~nl----~~v~~I~aH----~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 159 DTINL----QPVNTINAH----KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred Ecccc----eeeeEEEec----CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 98753 345566666 467889999999999999999997 8999999999999887543 357899999999
Q ss_pred CEEEEecCCCcEEeecC
Q 019006 331 PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~~ 347 (347)
++|+.+|..++|+||+|
T Consensus 231 ~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKL 247 (391)
T ss_pred CeEEEecCCCeEEEEEe
Confidence 99999999999999985
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.8e-18 Score=154.77 Aligned_cols=234 Identities=17% Similarity=0.212 Sum_probs=161.7
Q ss_pred CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCce--eeeeeccCcceeEeecCC
Q 019006 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQ--IKKMAEHNSFVNSCCPSR 152 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~ 152 (347)
+..|++||.++.. ...+..|...+.+..|+|||++|+.++.+ ..|++||+.+++. +..+.. ......+++
T Consensus 183 ~~~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC--ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986543 34566778889999999999999987654 4799999987753 222222 233467778
Q ss_pred CCCCEEEEEcCCCceEEE--eCCCCCceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCC-ceEEEecCCCCc
Q 019006 153 RGPPLVVSGSDDGTAKLW--DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKG-EVSMTLQGHQDM 228 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~ 228 (347)
++..++++.+.+|.+.+| |+.++.......+...+....|+|+++.++..+ .+|...+|++... .....+ .+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 776666666678876655 665555433333445677899999999777554 5677888876432 112222 3333
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC--C
Q 019006 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT--T 306 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~--~ 306 (347)
....|+|+|++++..+.++ +.+||+.... .. .+.... ....+.|+|||++|+.++.++.+.+|++ .
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~----~~-~lt~~~-----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGS----TE-VLSSTF-----LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCC----eE-EecCCC-----CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4578999999998888765 5569986432 11 111111 1235679999999999999998888875 3
Q ss_pred CceeeEEecCCccCeeeEEEcCCC
Q 019006 307 SRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
+++.+.++.+|.+.+...+|+|--
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCCC
Confidence 577888999999999999999853
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=6.6e-20 Score=164.59 Aligned_cols=274 Identities=25% Similarity=0.449 Sum_probs=208.1
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|.||..+|+|..|...|..+++|+.|..++||..+ +...+..++||.+.|+.++.+.+..++++++.|..|++|.+.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 367999999999999999999999999999999975 3455677899999999999999989999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----ecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-----TFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+..+..+.+|.+.|++++++|.. +.+.||++++||.+-...+. .+..+..+.++-|...+.-+++++.|+
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 99999999999999999998753 67899999999987222111 122334567777777788899999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.-..|.+... ..+...+.-+.++.+ ..+.+++-.+-.+++|++..+. ....+.+| ...+..+.++
T Consensus 339 ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~----l~H~l~gh----sd~~yvLd~H 404 (1113)
T KOG0644|consen 339 EARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ----LLHNLMGH----SDEVYVLDVH 404 (1113)
T ss_pred ccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccch----hhhhhccc----ccceeeeeec
Confidence 8887765321 112222221222222 2466667777889999987532 22333333 4567888899
Q ss_pred CCCCEE-EEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 286 PDGSKV-TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 286 ~~g~~l-~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
|-...+ .+++.||...|||.-.+-.++.+.-....+.+-+|+++|..++....-|.++|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 976655 589999999999998887765433224567778999999999888888888875
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-17 Score=155.63 Aligned_cols=295 Identities=18% Similarity=0.269 Sum_probs=198.7
Q ss_pred eEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCC------eeeEEEeCcccceeEEEEcCCCCEEEEecCCCe
Q 019006 51 MLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDC------KNFMVLKGHKNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
..+..|...|..++.++. +.+++|||.||+|++|++..-. +.......-...+..+...+.++.+|.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 446678899999988865 4999999999999999984211 111222323567888888889999999999999
Q ss_pred EEEEECCCC--ce-----ee--eeeccCcceeEeecCCCCC-CEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEE
Q 019006 124 LRAWDVETG--KQ-----IK--KMAEHNSFVNSCCPSRRGP-PLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAV 190 (347)
Q Consensus 124 i~iwd~~~~--~~-----~~--~~~~~~~~v~~~~~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~ 190 (347)
|++.+++-. +. .+ .....+..+..-.+..... ..++.+..-+.|..||++......... .++-|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999988752 11 11 1111222222222222222 378888899999999999776655543 34679999
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC-CCCceeEEEECCCC---CEEEEEc--CCCcEEEEeCCCCCCcCce
Q 019006 191 SFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG-HQDMITGMSLSPDG---SYLLTNG--MDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~~~~---~~l~t~~--~d~~i~~wd~~~~~~~~~~ 264 (347)
+.+|.+..+++|+..|.+.+||+|-+..+..+.. +..+|+.+..+|.. ...++++ ..+.|.+|++.....+. .
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~-v 1280 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT-V 1280 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE-E
Confidence 9999999999999999999999998887766542 34578888877643 3555444 46899999987542211 1
Q ss_pred eEEEec------cc-c-----ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee---------------------
Q 019006 265 VKILEG------HQ-H-----NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL--------------------- 311 (347)
Q Consensus 265 ~~~~~~------~~-~-----~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~--------------------- 311 (347)
+..-.+ .. . ........+.+...+.++.+|+.|..|+.||....+.-
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~ 1360 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLS 1360 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcccc
Confidence 110000 00 0 01112344556666789999999999999996432211
Q ss_pred --------E-------------------Ee--------cCCccCeeeEEEcCCC-CEEEEecCCCcEEeec
Q 019006 312 --------Y-------------------KL--------PGHTGSVNESVFHATE-PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 312 --------~-------------------~~--------~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~i~~ 346 (347)
+ +. .+|...|+++++-... .+|++++.||.|.||+
T Consensus 1361 ~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1361 TIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 00 1466677777765544 6999999999999996
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=8.7e-17 Score=140.71 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=161.3
Q ss_pred cccEEEEEECCCCCeEEEee-CCCcEEEEeccCCCee-eEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEEEECCCCc
Q 019006 57 QSAVYTMKFNPAGTVIASGS-HDRDIFLWHVHGDCKN-FMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDVETGK 133 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~ 133 (347)
.+....+.++|++++|++++ .++.|..|++.+.... .............++|+|++++|++++. ++.|.+|++++..
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 35567889999999887664 5788999998632211 1111112234678999999999888764 7899999986422
Q ss_pred ----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-------ecCCCCceEEEEEcCCCCeEEEE
Q 019006 134 ----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-------TFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 134 ----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.+..+. +......+.+++++..++++...++.|.+||+.+...+. ..+.......+.|+|++++++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 122221 222344566777776667778888999999997643221 12223446789999999999888
Q ss_pred ec-CCcEEEEeCCC--Cc--eEEEecCC------CCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEec
Q 019006 203 GI-DNDVKVWDLRK--GE--VSMTLQGH------QDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 203 ~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
.. ++.|.+||+.. ++ ....+..+ ......+.++|++++++++.. ++.|.+|++...............
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999873 32 22233221 112335889999999998854 689999998643211122222111
Q ss_pred cccccccceEEEEECCCCCEEEEeeC-CCeEEEEeCC
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIWDTT 306 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vwd~~ 306 (347)
......+.++|||++|+++.. ++.|.+|+..
T Consensus 273 -----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 273 -----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -----cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 113446789999999998775 8899999764
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=4.1e-18 Score=153.43 Aligned_cols=252 Identities=19% Similarity=0.286 Sum_probs=181.1
Q ss_pred CeeEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCee-----eEEEeCcccceeEEEEcCCC--CEEEEecC
Q 019006 49 PIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKN-----FMVLKGHKNAILDLHWTTDG--SQIISASP 120 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~--~~l~s~~~ 120 (347)
|...+. -...|.++.|+| +..+||.|..+|.|.+||+...... -.....|..+++.+.|..+- .-+++++.
T Consensus 235 Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 235 PELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred ceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 334443 357899999999 5678899999999999999654331 12345689999999997644 44999999
Q ss_pred CCeEEEEECCCCcee-----eeeec-------cCcceeEeecCCCCCCEEEEEcCCCceEEEeCC---CCC-----ce-e
Q 019006 121 DKTLRAWDVETGKQI-----KKMAE-------HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR---QRG-----AI-Q 179 (347)
Q Consensus 121 dg~i~iwd~~~~~~~-----~~~~~-------~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~---~~~-----~~-~ 179 (347)
||.|..|+++.-... ..... ....+..+.+.+..+..++.|+.+|.|.--+-. ... .. .
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 999999987643221 01111 122355677778888889999999999873322 221 11 2
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCC
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~ 257 (347)
...+...|+++.++|-+..++..+.|.++++|... ...+...+..+.+.+++++|||... .++++..||.|.+||+..
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 22456789999999988877666669999999887 6667777788888899999999754 567777899999999974
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
... .++...... ......+.|++.|+.|++|...|.+++|++..
T Consensus 474 ~~~--~Pv~s~~~~----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDE--EPVLSQKVC----SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc--CCccccccc----ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 322 122221111 23456677899999999999999999999853
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.9e-18 Score=143.17 Aligned_cols=203 Identities=23% Similarity=0.403 Sum_probs=157.5
Q ss_pred EecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCC------CeeeEEEeCcccceeEEEEcCC-CCEEEEecCCCe
Q 019006 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGD------CKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKT 123 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 123 (347)
++.||++.|..++|+| +...+||||.|.+|.+|.+..+ ..+...+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5789999999999999 5578999999999999998643 2345678999999999999995 457899999999
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CC-CceEEEEEcCCCCeEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DK-YQITAVSFSDASDKIYT 201 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~~ 201 (347)
|.+||+.+++.+-++. |...+.+++++.++ .++++.+.|+.|++||.+++..+..-. |. .+-..+.|-.++..+-+
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999887776 99999999998876 478999999999999999998887653 32 34455667767774444
Q ss_pred Ee---cCCcEEEEeCCCCceE---EEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCC
Q 019006 202 GG---IDNDVKVWDLRKGEVS---MTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 202 ~~---~dg~i~iwd~~~~~~~---~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~ 257 (347)
|. .+..+-+||...-+.. .++... +.|.---|.++.+.+..+| .|+.|+.|.+..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 43 4678999987654332 233322 2344445678777766555 689999999864
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.7e-17 Score=148.12 Aligned_cols=287 Identities=21% Similarity=0.284 Sum_probs=202.4
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccC---CCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG---DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
-|.-.+++.+++|+++.+|+|..||.|.+|.-.+ .......+.=|.+.|.++.|+++|.+|++||..|.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3666789999999999999999999999997644 2223445677899999999999999999999999999999998
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC---ceeecCC---------CCceEEEEEcCCCCeE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG---AIQTFPD---------KYQITAVSFSDASDKI 199 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~---------~~~v~~~~~~~~~~~l 199 (347)
++ .+-+.--++.+..+..++++ .+.+....|+.|.+....... .++.+.. ..-.+.++++|-.+.+
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 87 23333446677778887665 455666779999888654322 2222211 2235678889977788
Q ss_pred EEEecCCcEEEEeCCCCceEEEec-----------CCCCceeEEEECCCCCEEEEEc--------CC--CcEEEEeCCCC
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQ-----------GHQDMITGMSLSPDGSYLLTNG--------MD--CKLCIWDMRPY 258 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~i~~v~~~~~~~~l~t~~--------~d--~~i~~wd~~~~ 258 (347)
+-.+..|.|.+||+-+.+.+..++ .+...++.++.+..|++++|.- .| -.+++|-..+.
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 888899999999998766554432 1123467777888899999863 33 36788976654
Q ss_pred CCcCceeEEE-eccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCC------ce----eeEEecCCccCeeeEEE
Q 019006 259 APQNRCVKIL-EGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTS------RR----ILYKLPGHTGSVNESVF 326 (347)
Q Consensus 259 ~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~------~~----~~~~~~~h~~~v~~~~~ 326 (347)
.........+ ..|. ...+..+..++... ..++++.||.+++|-... +. +...-..|..++...+|
T Consensus 441 ~kt~~L~T~I~~PH~---~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 441 SKTFILNTKINNPHG---NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred cceeEEEEEEecCCC---ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 3333333332 2232 12233344455444 899999999999997732 21 12222247889999999
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+|.+| ++|.|++|.|||.
T Consensus 518 s~dGsll-a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 518 SQDGSLL-AVSFDDTITIWDY 537 (792)
T ss_pred cCCCcEE-EEecCCEEEEecC
Confidence 9999555 7888999999984
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.3e-19 Score=153.11 Aligned_cols=208 Identities=22% Similarity=0.382 Sum_probs=154.8
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC---------eeeEEEeCcccceeEEEEcCCCCEEEEe
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC---------KNFMVLKGHKNAILDLHWTTDGSQIISA 118 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 118 (347)
.|+..|++|.++|.|+...+++..+.+||-||+|+.|++..+. .....+.||.+.|+.+++|+....|+++
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence 5788999999999999999999999999999999999775221 1223578999999999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--------CCceE
Q 019006 119 SPDKTLRAWDVETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--------KYQIT 188 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~ 188 (347)
+.||+++.|+...... ..+... ......+.+........++...-+.--+++......+..++. ...++
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999999766544 222211 111122222221111111111112222233333333333321 13577
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+..+|.....+++..|+.|+++|..+++..+....|...++++++.|+|.+|++++.|+.+++|.+.
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999875
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1.6e-17 Score=132.63 Aligned_cols=278 Identities=22% Similarity=0.335 Sum_probs=194.0
Q ss_pred eEecCccccEEEEEECC---CCCeEEEeeC----CCcEEEEeccCCCeeeEEE--eCcccceeEEEEcCCC-----CEEE
Q 019006 51 MLLTGHQSAVYTMKFNP---AGTVIASGSH----DRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTTDG-----SQII 116 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~---~~~~l~s~~~----d~~v~~w~~~~~~~~~~~~--~~h~~~v~~~~~~~~~-----~~l~ 116 (347)
..+..+ =.++++.|+. .+..||.|+. .+.|.+-.+.....++... ..|..+++.+.|.|+. ++|+
T Consensus 39 y~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLA 117 (364)
T KOG0290|consen 39 YTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLA 117 (364)
T ss_pred EEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhh
Confidence 344444 3588999983 2457888875 3456665554333333222 3688899999999976 3455
Q ss_pred EecCCCeEEEEECCCCc--ee--e-----eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeecCC
Q 019006 117 SASPDKTLRAWDVETGK--QI--K-----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTFPD 183 (347)
Q Consensus 117 s~~~dg~i~iwd~~~~~--~~--~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~ 183 (347)
|++ ..+|+|.+...+ .. . +-..+...+.++.+...+++++.+.+-|-++.+||+..+. ..+.+.|
T Consensus 118 Ts~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 118 TSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred ccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 543 579999987421 11 0 1112345666777777788899999999999999999863 2455678
Q ss_pred CCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEec---CCCCceeEEEECCC-CCEEEEEcCC-CcEEEEeCCC
Q 019006 184 KYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQ---GHQDMITGMSLSPD-GSYLLTNGMD-CKLCIWDMRP 257 (347)
Q Consensus 184 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~-~~~l~t~~~d-~~i~~wd~~~ 257 (347)
+.+|..++|...+. .|++.+.||.+|+||+|.-+....+. ....+...++|++. -+++||-..| ..|.+-|+|.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 89999999998654 77899999999999999765333222 22346778899874 4678887666 4799999985
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCCcee------eEEecCCccCeeeEEEcCCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRI------LYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~ 330 (347)
. ...+..+++|. ..|..++|.|. ...|++++.|..+.+||+...-. +-.+. -+++|+.+.|++..
T Consensus 276 P---~tpva~L~~H~----a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 276 P---CTPVARLRNHQ----ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred C---CcceehhhcCc----ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC
Confidence 3 34455677764 56889999996 57899999999999999875322 11122 35789999999765
Q ss_pred -CEEEEecCC
Q 019006 331 -PVIGSCSSD 339 (347)
Q Consensus 331 -~~l~s~s~D 339 (347)
.+++.+...
T Consensus 348 ~Dwiai~~~k 357 (364)
T KOG0290|consen 348 PDWIAICFGK 357 (364)
T ss_pred CCEEEEEecC
Confidence 477776654
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=150.04 Aligned_cols=242 Identities=19% Similarity=0.344 Sum_probs=162.8
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
..|.||++-|+++.|+.+|.+|++|+.|-.+.|||.........+-.||...|.++.|.| +.+.+++|+.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 358899999999999999999999999999999998743333445679999999999998 467889999999999999
Q ss_pred CCCC----------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-------e----cCCCCce
Q 019006 129 VETG----------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-------T----FPDKYQI 187 (347)
Q Consensus 129 ~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-------~----~~~~~~v 187 (347)
+... .....+..|...|..++..+.++..+.+++.||+|+-+|++...... . .+.....
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9752 22334556777777788888888899999999999999998632111 0 1122356
Q ss_pred EEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 188 TAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 188 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
.++.++|..+ +|++|+.|-..++||.|.-.. .+... .. +.++|-. .++.++.|-.... +
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~--~~--~~~~pp~-------~~~cv~yf~p~hl-------k 263 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSD--GT--MNTCPPK-------DCRCVRYFSPGHL-------K 263 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCC--cc--ccCCCCc-------ccchhheecCccc-------c
Confidence 7889998755 778899999999999653211 11110 00 1112110 0111222211000 0
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
...+........+.-+.|+|+|.-|+..-..-.||+||+..++...
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0000000001124556799999877766666689999998776544
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-18 Score=145.73 Aligned_cols=194 Identities=22% Similarity=0.392 Sum_probs=145.4
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
.+++|+++|..|++|+.||++|+|+.... ........|...|.++.|+|||+.|++-+.| ..+||+.+++-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 68899999999999999999999997543 3445567899999999999999999999999 899999999855443331
Q ss_pred -cCc-ceeEeecCCCC--CC--EEEEEcCCCceEEEeCCCCCc------eeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 141 -HNS-FVNSCCPSRRG--PP--LVVSGSDDGTAKLWDMRQRGA------IQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 141 -~~~-~v~~~~~~~~~--~~--~~~s~~~d~~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
... ....|.+..++ .. +++....-+.|+.||+..... .+.......+++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 111 22234443322 12 233334456677777642211 1112233479999999999999999999999
Q ss_pred EEEeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 209 KVWDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 209 ~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+++..+-+..+-. +.|...|+.+.|+|+.+++++.+.|.+..+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99998876655433 5788999999999999999999999988888764
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.7e-17 Score=138.80 Aligned_cols=158 Identities=25% Similarity=0.376 Sum_probs=128.6
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc------
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ------ 261 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~------ 261 (347)
.+++|+.++..+++|+.||++|+|+..+.........|...|.++.|+|||++|++.+.| ..++|++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999987777777778888899999999999999999999 8999998754100
Q ss_pred --------------C--ceeEEE---ecc------------c---------cccccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 262 --------------N--RCVKIL---EGH------------Q---------HNFEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 262 --------------~--~~~~~~---~~~------------~---------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
. ..+... ..+ . ......+.+++.++||+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 0 000000 000 0 00123678899999999999999999999
Q ss_pred EEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 302 IWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 302 vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++..+.++++.. +.|...|+.+.|+|+.+.+++.+.|.++.+-.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 9999998888755 48999999999999999999999998887754
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=3.9e-17 Score=132.04 Aligned_cols=200 Identities=17% Similarity=0.271 Sum_probs=161.1
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC-CCC-
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV-ETG- 132 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~- 132 (347)
..+|+|.+|+++++.+|.+-+...|.||...+. .+....++.|...|+.++|+|..+.|++|+.|..-++|.. ..+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999988643 4567788999999999999999999999999999999988 433
Q ss_pred -ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce-----eecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 133 -KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI-----QTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 133 -~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+....+..++.....+.++|.. +.|++|+.-..|-+|-.++...- ...+....|++++|+|.+-.+++|+.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3344455677777888888775 56888999999999987765543 2234567899999999999999999999
Q ss_pred cEEEEeCC-----C-------------CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 207 DVKVWDLR-----K-------------GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 207 ~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
+.|+|..- . |+...++....+.+..+.|+|+|+.|+=.+.|..+.+=|-..
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99998631 1 111222323446799999999999999999999999988653
No 190
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=1.1e-17 Score=135.60 Aligned_cols=244 Identities=22% Similarity=0.340 Sum_probs=178.3
Q ss_pred CccccEEEEEECCC----CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPA----GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~ 129 (347)
.|....+.++|+-+ ..+||.||.-|.|++.|+... +....+.+|..+|..+.+.|+. ++++++|.|..||+|++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 47788899999754 468999999999999998643 3445688999999999999965 68899999999999999
Q ss_pred CCCceeeee---eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee---------------ecCC--------
Q 019006 130 ETGKQIKKM---AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ---------------TFPD-------- 183 (347)
Q Consensus 130 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---------------~~~~-------- 183 (347)
++..++..+ .+|...|.++.++.++. .+++++.|.++++|++....... .++.
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 999887766 45788899998988775 88999999999999987332111 0111
Q ss_pred ------CCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCc-------------eEEEecCCCCceeEE--EECCCCCEE
Q 019006 184 ------KYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGE-------------VSMTLQGHQDMITGM--SLSPDGSYL 241 (347)
Q Consensus 184 ------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~i~~v--~~~~~~~~l 241 (347)
...|-|+.|- ++++++-+.++.|..|..- -.+ ...++.-....|.-+ +|.|-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 1112222222 4678888999999999761 111 112222222334444 556778899
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.|...|.+.+||++...+. .+. .+..+ .-...|...+|+.||..|+...+|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~-~~t-tl~~s--~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPP-KCT-TLTHS--KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCc-cCc-eEEec--cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999976553 221 22111 123568899999999999999999999999854
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=8.4e-17 Score=145.05 Aligned_cols=261 Identities=13% Similarity=0.183 Sum_probs=180.9
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce--ee----eeeccCcceeEeecC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ--IK----KMAEHNSFVNSCCPS 151 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~~ 151 (347)
+.+.+|++.....+...+. -...|+++.|+| +..+++.|..+|+|.+||+..+.. .. ....|...+..+.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4689999965534433333 356899999999 456788888999999999987654 21 123466667666654
Q ss_pred CCCC-CEEEEEcCCCceEEEeCCCCCc------eeec-------CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCC-
Q 019006 152 RRGP-PLVVSGSDDGTAKLWDMRQRGA------IQTF-------PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRK- 215 (347)
Q Consensus 152 ~~~~-~~~~s~~~d~~i~iwd~~~~~~------~~~~-------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~- 215 (347)
.... .-+++++.||.|..|+++.-.. .... .....++++.|.+.. ..|+.|+.+|.|.--+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3221 3478888999999998764321 1111 123468899998764 4788999999988743222
Q ss_pred --Cc-----eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 216 --GE-----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 216 --~~-----~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
.. ....+..|.+.|+++.++|=+..++..+.|-+++||..... ..++..+..+ ...+..++|||..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---~~Pl~~~~~~----~~~v~~vaWSptr 453 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---ASPLLSLDSS----PDYVTDVAWSPTR 453 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC---CCcchhhhhc----cceeeeeEEcCcC
Confidence 21 12244567889999999997766665555999999986521 1111112111 2458999999986
Q ss_pred C-EEEEeeCCCeEEEEeCCCc--eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 S-KVTAGSSDRMVYIWDTTSR--RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~-~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
. .++++..||.|.+||+... +.+.+.+-+....+.+.|++.+++|+.|...|++++.++
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 4 5677888999999998654 344455555667788899999999999999999999875
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=3.2e-17 Score=130.83 Aligned_cols=236 Identities=21% Similarity=0.343 Sum_probs=174.1
Q ss_pred CccccEEEEEECCCC-----CeEEEeeCCCcEEEEeccCCCeee---EE-----EeCcccceeEEEEcC-CCCEEEEecC
Q 019006 55 GHQSAVYTMKFNPAG-----TVIASGSHDRDIFLWHVHGDCKNF---MV-----LKGHKNAILDLHWTT-DGSQIISASP 120 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~-----~~l~s~~~d~~v~~w~~~~~~~~~---~~-----~~~h~~~v~~~~~~~-~~~~l~s~~~ 120 (347)
.|.=+++.+-|.|+. ++|||.+. .+++|.+..+...+ .. -..+..++++..|+. +-++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 577788999999975 46777655 69999986321111 11 124567899999986 6678999999
Q ss_pred CCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eeecCC-CCceEEEEEc
Q 019006 121 DKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTFPD-KYQITAVSFS 193 (347)
Q Consensus 121 dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~-~~~v~~~~~~ 193 (347)
|-+..|||++++. ....+..|...|.+++|...+..+|++.+.||.+|+||+|.... +..-+. ......++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 24567789999999999998888999999999999999986542 222233 4567788888
Q ss_pred CCC-CeEEEEe-cCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCC--cCceeEE
Q 019006 194 DAS-DKIYTGG-IDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAP--QNRCVKI 267 (347)
Q Consensus 194 ~~~-~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~ 267 (347)
+.. +++++-. ....|.+.|+|.. ..+..+++|+..|++++|.|. ...++|+|.|..+.+||+...-. ....+..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 765 4566544 4457999999864 567889999999999999996 56899999999999999974221 1111111
Q ss_pred EeccccccccceEEEEECC-CCCEEEEeeCC
Q 019006 268 LEGHQHNFEKNLLKCGWSP-DGSKVTAGSSD 297 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~-~g~~l~sgs~d 297 (347)
+. ....|..+.|++ ...+++.+...
T Consensus 332 y~-----a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT-----AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh-----ccceeeeeeecccCCCEEEEEecC
Confidence 11 134688899985 46778777654
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=9.4e-18 Score=144.17 Aligned_cols=208 Identities=18% Similarity=0.311 Sum_probs=162.7
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
...|+.++.||.+.+.+-.+. ......+|.+++.+-.|+|||.-|++++.||.|++|. .+|.....+......|.++
T Consensus 75 ~d~~~i~s~DGkf~il~k~~r--VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSAR--VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecccch--hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 357888999999998876443 3346789999999999999999999999999999998 5565555566667788888
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCC-CCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (347)
.+.|+....+++.+ +.+.+--+. +.+.++--.|++-|.++.|++..+.+++|+.|-+.++||. .|...+.-..|..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY 228 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcc
Confidence 88888777666543 455555554 3344555567788999999999999999999999999996 4667777788999
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
+|++++|.|+ ..++.++.+ ++++=. ...+.+..++||+||..+++|...|.+.+=
T Consensus 229 ~ITSva~npd-~~~~v~S~n-t~R~~~-------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYN-TARFSS-------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeeeeccc-cceeeeeee-eeeecC-------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999 555665543 444211 113578999999999999999999987653
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-17 Score=133.15 Aligned_cols=264 Identities=18% Similarity=0.288 Sum_probs=181.4
Q ss_pred CCCCccCCCCc--CeeEecCccccEEEEEECC--CCCeEEEeeCCCcEEEEeccCCCee-eEEEeCcc-cceeEEEEcCC
Q 019006 38 NGKQRTSSLES--PIMLLTGHQSAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGDCKN-FMVLKGHK-NAILDLHWTTD 111 (347)
Q Consensus 38 ~~~~~~~~~~~--~~~~~~~h~~~V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~~-~~~~~~h~-~~v~~~~~~~~ 111 (347)
++..+.+...+ .+..+.+|...++.++|.. ....+.+|+.||+|++||+....+. .....+|. .+..+++....
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 34444444333 4456789999999999987 4578899999999999998643322 23344555 45566666666
Q ss_pred CCEEEEec----CCCeEEEEECCCCce-eeee-eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeec
Q 019006 112 GSQIISAS----PDKTLRAWDVETGKQ-IKKM-AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTF 181 (347)
Q Consensus 112 ~~~l~s~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~ 181 (347)
++.+++|. .|-.+.+||++..+. +..+ ..|..-|+.++|+|.++++|++|+.||-+.+||++... ....+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi 208 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI 208 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh
Confidence 77777764 466799999988765 4433 45888999999999999999999999999999997543 34556
Q ss_pred CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceEEEecCC------------CCceeEEEECC-CCCEEEEEcC-
Q 019006 182 PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGH------------QDMITGMSLSP-DGSYLLTNGM- 246 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~v~~~~-~~~~l~t~~~- 246 (347)
.+...|.++.|...+ +.+++-+...+..+|++..+.....+... .+.+... .+| +...++.++.
T Consensus 209 N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTD 287 (376)
T ss_pred cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccc
Confidence 667789999998765 46888888999999999877654433211 1112111 223 3445555555
Q ss_pred CCcEEEEeCCC--CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 247 DCKLCIWDMRP--YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 247 d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
-++..++-+.. ..........+.++. ...|.++.|...+.++.+|+.||.+.+|..
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~~---~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGGH---EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCceeEEEeeecccccccCccccccCCc---HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 45666664432 111222333444432 345677778888999999999999999974
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.1e-15 Score=125.97 Aligned_cols=235 Identities=16% Similarity=0.234 Sum_probs=167.7
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC--CeEEEEECCCCce
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD--KTLRAWDVETGKQ 134 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~ 134 (347)
...+..+.|+.+...|..|+.||. ++|+.....+ +.........|.-+-|+. .++|..+.+ ..+++.+...+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 345666779999999999999985 4666542211 111222223456666764 466655544 4589999887776
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CCCceEEEEEcCCCCeEEEE--ecCCcE
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASDKIYTG--GIDNDV 208 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~--~~dg~i 208 (347)
+..+.- ...+.++.... +.++.+-.+ .|.|||++..+.+.++. +...+.++++++.+.+++-- ...|.|
T Consensus 81 ICe~~f-pt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIFF-PTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEec-CCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 665542 23444555443 345555444 49999999998887763 33457777777777788753 356899
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCc-EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK-LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
.+||..+-+....+..|.+.+-+++|+++|.+|||++..|+ ||++.+.. +..+..++.-. ....+.+++|+||
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~----G~kl~eFRRG~--~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE----GQKLYEFRRGT--YPVSIYSLSFSPD 229 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC----ccEeeeeeCCc--eeeEEEEEEECCC
Confidence 99999999999999999999999999999999999999985 68998854 23334443221 2467899999999
Q ss_pred CCEEEEeeCCCeEEEEeCC
Q 019006 288 GSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~ 306 (347)
+++|++.|..++|++|.++
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 9999999999999999754
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=8.1e-17 Score=138.50 Aligned_cols=263 Identities=13% Similarity=0.192 Sum_probs=182.8
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccce-eEEEEc-------CCCCEEEEecCCCeEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAI-LDLHWT-------TDGSQIISASPDKTLRA 126 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v-~~~~~~-------~~~~~l~s~~~dg~i~i 126 (347)
-|...|.++.|+.....+.+++.+-.+.-|++..+...... -..+-| +.+..- ...+.++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~--~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAK--LPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhh--CCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 46666779999988888877766655555555432211111 111111 111111 12357888999999988
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.+ ..++..+.+..|.+.+.+-.+++++. -+++.+.||.|++|.-...-.-........|.|++|.|+.+.++-+.. +
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 76 45666667778888888778888765 467889999999997542211112245568999999999876654433 4
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.+.+=-+.....+...++|.+.|.++.|++..+.+++||.|-..++||-.. ..+..... .+-++.+++|+|
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~----~ey~ITSva~np 237 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAA----EEYAITSVAFNP 237 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCCh----hccceeeeeecc
Confidence 577767777777788899999999999999999999999999999999642 22211122 235799999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
+ ..++.||.. ++++ -....++|..++|++||..++.+...|.+.+
T Consensus 238 d-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 238 E-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9 666667653 3441 1123578999999999999999999988765
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.1e-17 Score=133.90 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=181.0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC------ceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCce
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG------KQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTA 167 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i 167 (347)
-+.+|.+.|.++.|+.+++.|++|+.|..+++|+++.. +.+.... .|...+.++.+... ...+++|..++++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCccee
Confidence 35689999999999999999999999999999998632 3333332 24467777777654 4578999999999
Q ss_pred EEEeCCCCCceeecCCC---CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce---EEEecCCCCceeEEEECCCC-CE
Q 019006 168 KLWDMRQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQDMITGMSLSPDG-SY 240 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~v~~~~~~-~~ 240 (347)
..-|+.+.+.+..+.+. ..|+.+..+|..+.|++.+.++.|.+||.+.... ...+........++.|+|.. .+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999888877654 4899999999999999999999999999986541 22222334556788999965 46
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee-eEEecCC--
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI-LYKLPGH-- 317 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~-~~~~~~h-- 317 (347)
|++.+..+.+.+||.+......-......+... -........|+|.|..|++--....=.+||..+.++ +.+....
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcc-cchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 677888889999999853211000000111110 012235677999999988876666677888877443 3444322
Q ss_pred ----ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 318 ----TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 318 ----~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
...+.+++|..+.. ++|+|.|-.|+||+|
T Consensus 289 GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred cceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 23567888877765 889999999999986
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=141.52 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=134.7
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeee-----ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC
Q 019006 110 TDGSQIISASPDKTLRAWDVETGKQIKKMA-----EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK 184 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~ 184 (347)
+.+--++.+-.-|.+.+.|....+ +..+. .....+.++.+.+.+..+++.+..+|.+.++|...- ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~ 254 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CG 254 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------cc
Confidence 445556677777888888765522 22211 123556677777777778888899999999987211 11
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
..-.+....+++..+......+. .+...+..+.--++.|+.++|+|||++||+.+.||.++|||....+
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----- 323 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----- 323 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----
Confidence 11111222334444443222111 1112233333334579999999999999999999999999987432
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+.+....+-....+++|||||+||++|+.|--|.||.+..++++.+-.||...|..|+|.
T Consensus 324 ---Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 324 ---LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ---HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 122223345678999999999999999999999999999999999999999999999998
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.9e-17 Score=148.47 Aligned_cols=250 Identities=16% Similarity=0.306 Sum_probs=173.3
Q ss_pred cccEEEEEECC--CCCeEEEeeCCCcEEEEeccCCC----eeeE---EEeCc----ccceeEEEEcCCCCEEEEecCCCe
Q 019006 57 QSAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGDC----KNFM---VLKGH----KNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 57 ~~~V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~----~~~~---~~~~h----~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
...|+.|.+-. |..+|.+|+.||.|+||+-.... +... .+.++ .+.=.-++|.....+|+++|.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 35677787743 45789999999999999865332 1111 11111 111134678887778888877899
Q ss_pred EEEEECCCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eeec-CCCC--ceEEEEEcCCC
Q 019006 124 LRAWDVETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTF-PDKY--QITAVSFSDAS 196 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~-~~~~--~v~~~~~~~~~ 196 (347)
|+|||......+..+... ...+..+........++++|-.||.+++||.+.... +... ++.. .|..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 999999887776666443 334555555555567999999999999999875432 2222 2333 38888888865
Q ss_pred C-eEEEEecCCcEEEEeCCCCceE--EEecCCC--C-ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEec
Q 019006 197 D-KIYTGGIDNDVKVWDLRKGEVS--MTLQGHQ--D-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 197 ~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~--~-~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
- .+++|+.+|.|++||+|..... .++..|. + .++++..+++...+|+|+. +.|+||++... +...++...+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPG 1345 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccCcc
Confidence 4 5999999999999999974221 2222332 2 4899999999999999998 89999998632 1112222222
Q ss_pred cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
....-...+.+++|+|..-+||+|+.|.+|.||.....+
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 222223567899999999999999999999999876543
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=8.1e-17 Score=141.89 Aligned_cols=241 Identities=17% Similarity=0.271 Sum_probs=174.3
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
....+.||.+.|++++|+.+|..+|+|+.|..|.+|+..-+.. .--.|.+.|.+|.|+|-...|++|+... .-+|.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS 120 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWS 120 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---eeeccCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence 4567899999999999999999999999999999998642211 1236999999999999999999987643 45776
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEEEEcCCC-----CeEE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAVSFSDAS-----DKIY 200 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-----~~l~ 200 (347)
.+... +.+. .....+.+|++..+ +.+++.|-.+|+|.+-+......+..-. ....|.+++|+|.. ..++
T Consensus 121 ~~qK~-V~K~-kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 121 PEQKS-VSKH-KSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhh-HHhh-hhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 54322 1111 12234556666555 4688899999999998765443333222 34679999999874 3567
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
+.....++.+|.+. |+.+..-..-.-...|+.+.++|.+++.||.|+.+.+|-... ..+.+ ...++..|+
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGT----vg~~D~WIW 267 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGT----VGEQDSWIW 267 (1081)
T ss_pred EEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEee----ccccceeEE
Confidence 77788888888764 433332222222346889999999999999999999996431 11122 223567899
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
.++..|++++++.|..||+|--|++.
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999999999999863
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2.3e-15 Score=135.60 Aligned_cols=235 Identities=16% Similarity=0.193 Sum_probs=158.6
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec---CCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS---PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.+||.++.. ...+..+...+.+.+|+|||+.|+..+ .+..+.+|++.+++.. .+...........+++++..
T Consensus 180 ~l~~~d~dg~~--~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCC--CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCE
Confidence 57788776532 233445667889999999999988654 3457999999887532 22222233334677888876
Q ss_pred EEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-N--DVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++ .|.+||+.++...+.......+....|+|+++.++..+.+ + .|+++|+.+++.. .+..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 766656555 4888999877665544445567889999999988766654 4 4555677666432 33333344567
Q ss_pred EEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe---EEEEeC
Q 019006 232 MSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM---VYIWDT 305 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~---i~vwd~ 305 (347)
..|+|+|++++..+.+ ..|.+||+.... ...+.... ......|+|||++|+.++.++. ++++++
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----VQVLTDTF-----LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCC-----eEEeCCCC-----CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 8999999998876543 358888886432 12222111 1224679999999999887764 777777
Q ss_pred CCceeeEEecCCccCeeeEEEcCC
Q 019006 306 TSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
++....++.+|.+.+...+|+|-
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCCC
Confidence 45566788899999999999984
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=4.9e-18 Score=152.73 Aligned_cols=234 Identities=22% Similarity=0.382 Sum_probs=185.1
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 174 (347)
.+.+|..+|.|..|...|.++++|+.|..++||..+++.++....+|...+...+.+..+ .++++++.|..|++|-+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCC
Confidence 467899999999999999999999999999999999999999999999999887776543 5788999999999999999
Q ss_pred CCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE---ec-CCCCceeEEEECCCCCEEEEEcCCCc
Q 019006 175 RGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT---LQ-GHQDMITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 175 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
+.++..+. |.+.|++++|+|- .+.+.||++++||.+-.-.... +. ...+.+.++-|..++..++|++.|+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 98887764 5678999999994 3788999999999872111111 11 11345677888888999999999999
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
-..|.+....... ..+.-+.++.| ..+.+++-.+-.+.+|++.++.++..+.+|...+.-+.+||
T Consensus 340 a~n~e~~~l~~~~--------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRS--------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cccchhhHhhhhc--------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 8888764211000 00111111112 25666777888999999999999999999999999999999
Q ss_pred CCCEEE-EecCCCcEEeecC
Q 019006 329 TEPVIG-SCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~-s~s~D~~i~i~~~ 347 (347)
-++.++ +++.||...|||+
T Consensus 406 fn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred CCcHhhhhccCCCceEeeec
Confidence 998655 9999999999996
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=3.3e-16 Score=125.02 Aligned_cols=200 Identities=22% Similarity=0.372 Sum_probs=153.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEE-----EeCcccceeEEEEcC--CCCEEEEecCCCeEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV-----LKGHKNAILDLHWTT--DGSQIISASPDKTLRAW 127 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~-----~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw 127 (347)
.|-+.|.|+.|.|++..||+-. |..|.+|++....+.... -.+|....++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4566899999999999998876 889999999643321111 123566778889998 67777765 68999999
Q ss_pred ECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecC-CCCceEEEEEcCCC-CeEEEEe
Q 019006 128 DVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFP-DKYQITAVSFSDAS-DKIYTGG 203 (347)
Q Consensus 128 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~ 203 (347)
|+++.++...+. .|...+.++.++|+...++++|+.||.|++||.|.- .+++.++ |...+.++.|+|.. +.+++|+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 999876655553 467778889999998899999999999999999853 4566654 45689999999874 4677999
Q ss_pred cCCcEEEEeCCCCc-----------------------------eEEEecCCCCceeEEEECCCCCE-EEEEcCCCcEEEE
Q 019006 204 IDNDVKVWDLRKGE-----------------------------VSMTLQGHQDMITGMSLSPDGSY-LLTNGMDCKLCIW 253 (347)
Q Consensus 204 ~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~v~~~~~~~~-l~t~~~d~~i~~w 253 (347)
.|..|.+|...+-. .+.++..|.+.|.+++|+.-..+ +|+-+.||.+.|=
T Consensus 279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 99999999753210 12345678899999999986665 5677999999887
Q ss_pred eCC
Q 019006 254 DMR 256 (347)
Q Consensus 254 d~~ 256 (347)
.+.
T Consensus 359 ~V~ 361 (370)
T KOG1007|consen 359 SVP 361 (370)
T ss_pred cCC
Confidence 654
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9e-15 Score=114.25 Aligned_cols=236 Identities=16% Similarity=0.290 Sum_probs=159.8
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe-----eeE--EEeCcc-----cceeEEEEcCCCCEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK-----NFM--VLKGHK-----NAILDLHWTTDGSQII 116 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-----~~~--~~~~h~-----~~v~~~~~~~~~~~l~ 116 (347)
++...++|.++|+.|+|. ..+|++|+. |.|+-|......+ ... ....|. ..|.+|...|..+-++
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 455668999999999997 566777665 9999987643211 111 112233 3578898999888888
Q ss_pred EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC---C--------C
Q 019006 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD---K--------Y 185 (347)
Q Consensus 117 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~--------~ 185 (347)
.++.|+.++-||+++|+..+.+.+|..++.++..-... ..+++|+.||++|+||.++++.++.+.. + .
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence 88899999999999999999999999999987763333 3578999999999999999988776531 1 1
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
.|.+++. +...+++|+. ..+.+|.+++.++...+.- ...+..+.|- ...++++|..+.+.-|.+.. ...
T Consensus 210 wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G-----vl~ 278 (325)
T KOG0649|consen 210 WIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG-----VLQ 278 (325)
T ss_pred eeEEEec--cCceEEecCC-CceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeecc-----EEE
Confidence 2455554 4467776654 4699999998876555432 2346667774 45678888778888887642 111
Q ss_pred EEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEE
Q 019006 266 KILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIW 303 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vw 303 (347)
...+.. .-.+.+..|+.. -++|..++..+.+.++
T Consensus 279 a~ip~~----s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 279 ANIPVE----STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EeccCC----ccceeeecccCCceEEEEecccceeeeee
Confidence 111111 112444444433 2445556666667666
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.1e-15 Score=134.44 Aligned_cols=274 Identities=14% Similarity=0.198 Sum_probs=182.1
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC---CEEEEecCCCeEEEEECCCCceeeee
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG---SQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.-.|++|++.++.... ..|.+|.... ......+.+|..+++.+.+.|.. .++++++.||.|++||...+.+++.+
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~T-g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTAT-GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecch-HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3468899988876554 5789998753 23344789999999999998754 46789999999999999999888877
Q ss_pred eccCcceeEe---ecCCCCCCEEEEEcCCCce------------EEEeCCCCCc--eeecCCCCceEEEEEcCCCCeEEE
Q 019006 139 AEHNSFVNSC---CPSRRGPPLVVSGSDDGTA------------KLWDMRQRGA--IQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 139 ~~~~~~v~~~---~~~~~~~~~~~s~~~d~~i------------~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
..+....... ++.... ..+.....|..+ +-+.+.+... .........-.++.+.+.+.+...
T Consensus 99 ~~~~~v~~~~~~~~~a~~s-~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADIS-ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred ecCCceeEEEechhHhCcc-ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 6543322111 111111 111112222111 1111111000 000000111356677776666555
Q ss_pred EecCCcEEEEeCCCCceEE----EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 202 GGIDNDVKVWDLRKGEVSM----TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.... .+.+|+........ .-..|.-.+++.++||++++++++..||.|.+|.--..+........+..| ..
T Consensus 178 ~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH----~~ 252 (792)
T KOG1963|consen 178 VHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH----HD 252 (792)
T ss_pred EEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec----cc
Confidence 5544 57888876643111 112466668999999999999999999999999532211111122334444 35
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.+.+++|+++|.+|++|+..|.+.+|.+.+++ .+.++.-...|..+.++|++.+.+..-+|.+|.+
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 79999999999999999999999999999988 5567777889999999999999999999998875
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=2.7e-16 Score=137.91 Aligned_cols=231 Identities=19% Similarity=0.291 Sum_probs=161.3
Q ss_pred CCCEEE--EecCCCeEEEEECCCCceeee----eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----
Q 019006 111 DGSQII--SASPDKTLRAWDVETGKQIKK----MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ----- 179 (347)
Q Consensus 111 ~~~~l~--s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----- 179 (347)
+..+++ .++..|.|-||+++..-.+-. -......|.++.+.+.+...++.++.||.|++|.+..+..-.
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 334444 346679999999875322211 112345678888888888889999999999999987554321
Q ss_pred --ec-CCCCceEEEEEcCC-CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 180 --TF-PDKYQITAVSFSDA-SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 180 --~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
.+ .+..+|+++.|+|- ...|++++.|-+|++||+++.+....+.+|++.|.+++|+|+|+.+++.+.||+|++|+-
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 12 24457999999986 457889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC----CeEEEEeCCCce--eeEEec-CCccCeeeEEEcC
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD----RMVYIWDTTSRR--ILYKLP-GHTGSVNESVFHA 328 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d----g~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~~~ 328 (347)
+..+. .+..-++ .....-.++.|-=||+++++.+.| ++|.+||..+-. .++..- .-...+.--.+.+
T Consensus 750 rs~e~---pv~Eg~g---pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 750 RSREQ---PVYEGKG---PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred CCCCC---ccccCCC---CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccC
Confidence 75322 1111111 111234456677899999887655 578899876533 333221 0011111112344
Q ss_pred CC-CEEEEecCCCcEEeecC
Q 019006 329 TE-PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~-~~l~s~s~D~~i~i~~~ 347 (347)
|. -++.|+-.|..|+++++
T Consensus 824 Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred CCceEEEecCCCceEEEEEe
Confidence 43 36778888999999875
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=137.35 Aligned_cols=222 Identities=17% Similarity=0.251 Sum_probs=149.1
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~ 125 (347)
..+..|...+...+|+|+|+.|+..+.+ ..|++|++.+.. ..+..+.+| ....+|+|||++|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3456788889999999999999887654 369999986432 222223333 34689999999888764 678766
Q ss_pred EE--ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 126 AW--DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 126 iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
|| |+.+++ ...+..+...+....+++++..++++...++...+|++... .....+.... ....|+|+++.++..
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEE
Confidence 65 655554 34455555556667788887766666667888888876432 2222222222 457899999999887
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
+.++ +.+||+.+++.......+ ....+.|+|+|++++.++.++...+|++... .+.....+..+. ..+...
T Consensus 351 ~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~--~G~~~~~l~~~~----g~~~~p 421 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA--DGRFKARLPGSD----GQVKFP 421 (429)
T ss_pred cCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC--CCCceEEccCCC----CCCCCc
Confidence 7754 666999888654332222 2456889999999999999998888876421 233445554432 345667
Q ss_pred EECCC
Q 019006 283 GWSPD 287 (347)
Q Consensus 283 ~~s~~ 287 (347)
+|+|-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 78874
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=7.3e-17 Score=136.44 Aligned_cols=265 Identities=17% Similarity=0.261 Sum_probs=194.0
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
+-..+.+.++.+|.+|+.|+.-|.|-.+|+... .....+. -...|.++.|..+..++|.+ ....++||| ..|..+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEe
Confidence 445678899999999999999999999988532 2222222 23468889998887766655 667899999 4577777
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
.+..+.. +..+.|.|- ..+|++++..|.++.-|+..++.+..+.. ...+..+.-+|-...+-+|...|+|.+|...+
T Consensus 205 Clk~~~~-v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRHIR-VARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhcCc-hhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 7766543 334444443 36889999999999999999998877754 45677888888888888999999999999988
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.+....+..|.++|.++++.++|+|++|.|.|..++|||+|.+.... .+.. .-....+++|..| +||.|
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~----t~~t-----p~~a~~ls~Sqkg-lLA~~- 351 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH----TYRT-----PHPASNLSLSQKG-LLALS- 351 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc----eeec-----CCCcccccccccc-ceeee-
Confidence 88888999999999999999999999999999999999999754211 1111 1234455666655 34444
Q ss_pred CCCeEEEEe-CCC--ceeeEEecCC--ccCeeeEEEcCCCCEEEEecC
Q 019006 296 SDRMVYIWD-TTS--RRILYKLPGH--TGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 296 ~dg~i~vwd-~~~--~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~ 338 (347)
....|.+|. ... +.....+..| .+.|.++.|-|-+..|..+-.
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 334799993 322 1222233344 358999999998877765443
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.8e-14 Score=116.67 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=157.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee--eeccCcceeEeecCCCCCCEEEEEcCC------CceEEEeCC
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDMR 173 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~~ 173 (347)
...+++|+.|...++.|-.+| .+||+.+-.++... +...+-.+....+ ..+.+.+.|+.+ ..+.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345589999988888776666 79998875333111 1111111111111 112233444433 579999977
Q ss_pred CCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCceEEEecCC--CCceeEEEECCCCCEEEEEc-CCCc
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSMTLQGH--QDMITGMSLSPDGSYLLTNG-MDCK 249 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~v~~~~~~~~l~t~~-~d~~ 249 (347)
...++.++.-..+|.++.+.++ .+++. .++.|++|... +.+....+... ...+.+++-+.+..+|+.-| .-|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 7788888888889999999864 34433 45689999876 33444443322 22233333222334444433 4589
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEecCC--ccCeeeEEE
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLPGH--TGSVNESVF 326 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~~h--~~~v~~~~~ 326 (347)
|.|-|+...... ....+..|. ..|.+++.+.+|.+|||+|..|+ |||||..+|.++++++.- ...|.+++|
T Consensus 161 vQi~dL~~~~~~--~p~~I~AH~----s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 161 VQIVDLASTKPN--APSIINAHD----SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred EEEEEhhhcCcC--CceEEEccc----CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 999998753321 235566664 57889999999999999999998 899999999999988633 457999999
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+..+||.+|..|+++||.+
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEe
Confidence 999999999999999999864
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.1e-14 Score=131.78 Aligned_cols=235 Identities=18% Similarity=0.197 Sum_probs=156.4
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (347)
..|.+||..+. ....+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++.. .+...........+++++.
T Consensus 184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC
Confidence 35888887543 233455677789999999999999987643 46999999877643 2222233334567778877
Q ss_pred CEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CCc--EEEEeCCCCceEEEecCCCCcee
Q 019006 156 PLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DND--VKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 156 ~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
.++++.+.++ .|.+||+.++.......+........|+|+++.++..+. +|. |+++|+.+++... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 6766666666 588899987765443333334567899999998886664 444 7777877665432 222223445
Q ss_pred EEEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEe
Q 019006 231 GMSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWD 304 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd 304 (347)
.++|+|+|++++..+.++ .|.+||+..... ..+.... ......|+|||++|+..+.+ +.|++++
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTPGS-----LDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe-----EECCCCC-----CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 689999999988765432 689999864321 1222111 12345799999998877653 4688888
Q ss_pred CCCceeeEEecCCccCeeeEEEcC
Q 019006 305 TTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 305 ~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
+.. ....++..+.+.+...+|+|
T Consensus 410 ~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCC-CceEEcccCCCCCCCCccCC
Confidence 854 45667777777888888987
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.2e-14 Score=127.00 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=151.2
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.++|..+. ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +...........+++++..
T Consensus 177 ~L~~~D~dG~--~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQ--NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCC--CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4666666432 233455677788999999999999877643 469999998876532 3223334445677888777
Q ss_pred EEEEEcCCCceEEEe--CCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CCcEEEE--eCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDGTAKLWD--MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DNDVKVW--DLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++...+|. +..+.......+........|+|+++.++..+. +|...+| ++..++... +..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~ 332 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTS 332 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCc
Confidence 777778888877765 444433222223334566789999998876554 4555555 544444322 2112233456
Q ss_pred EEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC---eEEEEeC
Q 019006 232 MSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR---MVYIWDT 305 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~ 305 (347)
..|+|+|++++..+.++ .|.+||+.... . +.+.... ......|+|||++|+..+.++ .+++.+.
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----~-~~lt~~~-----~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQ----V-TALTDTT-----RDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCC----e-EEccCCC-----CccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 78999999998766554 69999986432 1 1222111 123567999999998877543 4666676
Q ss_pred CCceeeEEecCCccCeeeEEEcCC
Q 019006 306 TSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
++....++..+.+.+...+|+|-
T Consensus 403 -~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCceEEeecCCCCCCCCccCCC
Confidence 46666777778888899999885
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.1e-14 Score=121.07 Aligned_cols=263 Identities=17% Similarity=0.260 Sum_probs=180.1
Q ss_pred ccccEEEEEECCCC--CeEEEeeCCCcEEEEeccCCC-ee----eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 56 HQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDC-KN----FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 56 h~~~V~~v~~~~~~--~~l~s~~~d~~v~~w~~~~~~-~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
-...|..+.|.-++ ..|...+.|..+..+...... .. .......+.+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 34567777777554 456555566666655543211 00 11233445566666554 34788899999999999
Q ss_pred CCCCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCceeecCC----------CCceEEEEE
Q 019006 129 VETGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAIQTFPD----------KYQITAVSF 192 (347)
Q Consensus 129 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~~~~~----------~~~v~~~~~ 192 (347)
...+. .+..+..+ ..+..+...+..+.++++|+.. ..+++||+.+.+.+..-.. ...++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87443 22233333 2233344455666788889998 8899999987755543321 123677888
Q ss_pred cCC--CCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 193 SDA--SDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 193 ~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
-+. ...|++++.-+.+++||.+.++ ++.++.--..+|+++...|.+++++++..-+.+..||++... ....
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k----l~g~-- 284 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK----LLGC-- 284 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce----eecc--
Confidence 877 7899999999999999998764 555666567789999999999999999999999999998532 1111
Q ss_pred ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
......+.+.++..+|.+++||+++-|++|||+|..+.+++.+.- -...++.+.+.++
T Consensus 285 -~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 285 -GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred -ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 122345678889999999999999999999999999977765321 1223455555443
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=2e-14 Score=134.82 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=160.4
Q ss_pred eeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCCC-------ceeeeeeccCcceeEeecCCCCCCEEEEEcC
Q 019006 92 NFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVETG-------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD 163 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 163 (347)
....+..|+..|..++.+++. .+++|||.||+|++|+...- +...++......+..+.....+ ..++.++.
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~ 1118 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTK 1118 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEcC
Confidence 344567788888888887655 89999999999999997532 1112222223334333333333 45777899
Q ss_pred CCceEEEeCCCCCc-----ee-ec---CCCCceEE-EEEcCC-C-CeEEEEecCCcEEEEeCCCCceEEEec--CCCCce
Q 019006 164 DGTAKLWDMRQRGA-----IQ-TF---PDKYQITA-VSFSDA-S-DKIYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMI 229 (347)
Q Consensus 164 d~~i~iwd~~~~~~-----~~-~~---~~~~~v~~-~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i 229 (347)
||.|++.++..-.. .+ .. .....+.. -++... . ..++.+...+.|..||.++.....+++ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999998865211 11 11 11222322 233322 2 367778888999999999876554443 234789
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE---CCCCCEEEEee--CCCeEEEEe
Q 019006 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW---SPDGSKVTAGS--SDRMVYIWD 304 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~g~~l~sgs--~dg~i~vwd 304 (347)
++++.+|.++++++|...|.+.+||+|-..+ +... .+.....+..+.. .|.....++++ ..+.|.+|+
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~----i~sw---~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP----ILSW---EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCce----eecc---cCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 9999999999999999999999999984322 2111 1122234444444 44445665554 478899999
Q ss_pred CCCceeeEEecCC-------------------ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 305 TTSRRILYKLPGH-------------------TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 305 ~~~~~~~~~~~~h-------------------~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+|.+-+.+-.. .-+.....+...+..+.+++.|..|+.||.
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 9988665544322 122334455556779999999999999984
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.9e-13 Score=123.90 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=155.9
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP---DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.++|..+. ....+..|...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+......+....+++++..
T Consensus 183 ~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 5777776543 33456677888999999999999887753 468999999887643 33334445556677888777
Q ss_pred EEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++. |.+||+.++.......+........|+|+++.++..+. +| .|+++|+..++.. .+..+...+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~ 338 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST 338 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence 7777776665 66678877655443333444567899999998886663 33 5888898766543 33323445667
Q ss_pred EEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC------CeEEE
Q 019006 232 MSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD------RMVYI 302 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d------g~i~v 302 (347)
..|+|+|++|+..+.+ ..|.+||+.... ...+... ..+....|+|||++|+..+.+ ..+++
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-----~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-----ERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCc-----eEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 8999999999876543 357778864211 1222111 124456799999998775542 36888
Q ss_pred EeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 303 WDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 303 wd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
+|+..+.. ..+. ..+.+...+|+|-
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCCC
Confidence 89876554 4554 3556777888874
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=1.9e-14 Score=117.73 Aligned_cols=282 Identities=19% Similarity=0.360 Sum_probs=180.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe----eeEEEeCcc------------cceeEEEEcCCC--CEEEEe
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK----NFMVLKGHK------------NAILDLHWTTDG--SQIISA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~ 118 (347)
..-+.+|.|...|.+||+|..+|.|.++.-..... ....++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35688999999999999999999999986542221 122333443 457889998865 467778
Q ss_pred cCCCeEEEEECCCCceee--------------------ee----------------eccCcceeEeecCCCCCCEEEEEc
Q 019006 119 SPDKTLRAWDVETGKQIK--------------------KM----------------AEHNSFVNSCCPSRRGPPLVVSGS 162 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~--------------------~~----------------~~~~~~v~~~~~~~~~~~~~~s~~ 162 (347)
..|++|++|-+....... .+ ..|.-.++++....+.. .+++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEee-c
Confidence 899999999875321100 00 01334455555555543 4444 5
Q ss_pred CCCceEEEeCCCC-Cc--eeec-CCC-----CceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCce------EEEec---
Q 019006 163 DDGTAKLWDMRQR-GA--IQTF-PDK-----YQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEV------SMTLQ--- 223 (347)
Q Consensus 163 ~d~~i~iwd~~~~-~~--~~~~-~~~-----~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~~~--- 223 (347)
.|-+|.+|++.-- +. +..+ |+. .-|++..|+|... .++-.+..|+|++.|+|.... .....
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7789999998632 21 1112 222 2478889998754 556678899999999985321 11111
Q ss_pred -------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-------c----cceEEEEEC
Q 019006 224 -------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-------E----KNLLKCGWS 285 (347)
Q Consensus 224 -------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~s 285 (347)
+--..|..+.|+++|+|+++-.. -+|++||+.. ..+.+..++.|.... + -.-..|+|+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm---e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM---EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc---cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 11235788999999999998664 3899999853 223344444443211 0 123578899
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceee-------------------EEec--CC-------------ccCeeeEEEcCCCC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRIL-------------------YKLP--GH-------------TGSVNESVFHATEP 331 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~-------------------~~~~--~h-------------~~~v~~~~~~~~~~ 331 (347)
-++.++++||..+..++|+...|... .... |. ...+...+|||.+.
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en 418 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN 418 (433)
T ss_pred CCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccc
Confidence 99999999999999999995433210 0000 11 12467788999999
Q ss_pred EEEEecCCCcEEee
Q 019006 332 VIGSCSSDKQIYLG 345 (347)
Q Consensus 332 ~l~s~s~D~~i~i~ 345 (347)
.+|.+..+. ++|+
T Consensus 419 ~ia~aatnn-lyif 431 (433)
T KOG1354|consen 419 SIAVAATNN-LYIF 431 (433)
T ss_pred eeeeeecCc-eEEe
Confidence 998887763 4443
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=2.6e-14 Score=116.39 Aligned_cols=279 Identities=16% Similarity=0.234 Sum_probs=185.2
Q ss_pred EEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeecc
Q 019006 63 MKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVETGKQIKKMAEH 141 (347)
Q Consensus 63 v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 141 (347)
.+|+|+|+++|+.+.- .+.+=|... ..+..+-.--+.|.-+.|..|..+++++ ..|+.|.+|++...+--.++...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 4799999999999886 444444321 0000001113567888999988887765 57789999999887777778778
Q ss_pred CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC----------------
Q 019006 142 NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID---------------- 205 (347)
Q Consensus 142 ~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------- 205 (347)
...+...+++|++..++.+..-+-+|.+|.+.+.+....--.+..+..++|++++++.+..+..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 8888889999999999999999999999999876654333334456778888888876655432
Q ss_pred --------------------CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc----
Q 019006 206 --------------------NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ---- 261 (347)
Q Consensus 206 --------------------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---- 261 (347)
+.+.+||.--.-.+..+. -.-.+..++|+|-+++|+.|+.|+.+++-+--+.++.
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc
Confidence 123334321111111111 1134778999999999999999998887532110000
Q ss_pred ------------------------Cce----------------------------eEEEec--cccccccceEEEEECCC
Q 019006 262 ------------------------NRC----------------------------VKILEG--HQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 262 ------------------------~~~----------------------------~~~~~~--~~~~~~~~~~~~~~s~~ 287 (347)
..+ +..++. ...+....+-.++|++|
T Consensus 250 hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 250 HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 000 000000 00011123456789999
Q ss_pred CCEEEEeeCC--CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 288 GSKVTAGSSD--RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..++++-.+. +.+.+||++..++-..+ -...+|....|+|..+.|+-+.....+|+|.
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 9999986653 67999999887654333 2345799999999999888888777888884
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4.1e-13 Score=108.95 Aligned_cols=233 Identities=12% Similarity=0.176 Sum_probs=151.5
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc--ceeEEEEcCCCCEEEEec-CC------CeEEEEECC
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN--AILDLHWTTDGSQIISAS-PD------KTLRAWDVE 130 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~-~d------g~i~iwd~~ 130 (347)
...++|+.|..-+++|..+| .++|+++. .++......+.. .+.-|-|- .++|+..+ .+ ..+.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P-~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDP-FKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCc-hhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 34489999999888887766 68888742 111111111111 12222222 34554333 22 369999955
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC-CCCceeec---CCCCceEEEEEcCCCCeEEE-EecC
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTF---PDKYQITAVSFSDASDKIYT-GGID 205 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~~-~~~d 205 (347)
..+++.++. -...|..+...++ .++.. .+++|.+|... .-+.+..+ .......+++-+.....|+. |-.-
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 556655554 2345666665543 34433 45789999876 33333333 33334555544444445554 4466
Q ss_pred CcEEEEeCCCCce--EEEecCCCCceeEEEECCCCCEEEEEcCCCc-EEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEV--SMTLQGHQDMITGMSLSPDGSYLLTNGMDCK-LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|.|.|-|+...+. ...+.+|.+.|.+++++.+|..+||++..|+ |+|||..+. ..+..++.- .....+.++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g----~~l~E~RRG--~d~A~iy~i 232 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG----TLLQELRRG--VDRADIYCI 232 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC----cEeeeeecC--CchheEEEE
Confidence 9999999987655 4778899999999999999999999999996 789998753 334444322 124579999
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
+|||+..+||++|+.|+|++|.++.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999997754
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=3.7e-14 Score=117.86 Aligned_cols=238 Identities=20% Similarity=0.290 Sum_probs=170.9
Q ss_pred ccceeEEEEcCCC--CEEEEecCCCeEEEEECCCCceeeee------eccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 100 KNAILDLHWTTDG--SQIISASPDKTLRAWDVETGKQIKKM------AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 100 ~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
...|.+++|..++ +.++.++.|..+..+.+......... ......+..... ....+++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEEe
Confidence 3467777776544 34555556777777666554433322 112222322222 123678899999999998
Q ss_pred CCCCC----ceeecCCCCceEEEEEcCCCCeE-EEEecC--CcEEEEeCCCCceEEEecCCC---------CceeEEEEC
Q 019006 172 MRQRG----AIQTFPDKYQITAVSFSDASDKI-YTGGID--NDVKVWDLRKGEVSMTLQGHQ---------DMITGMSLS 235 (347)
Q Consensus 172 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~ 235 (347)
.+.+. ....+.....+..+.-++..+.+ ++|+.. +.+++||+...+.+.+-+.-. -.++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 87432 22223334456666666665554 558988 889999998876555433211 235778888
Q ss_pred CC--CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 236 PD--GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 236 ~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
+. ...++++..-+.+++||.+.+ .+++..+.-. +..+.++...|+|++|++|..-|.+..||.+.+.++..
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQ---RRPVAQFDFL----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred CCCCCceEEEEecceeEEEecCccc---CcceeEeccc----cCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 87 789999999999999999853 4455554432 35688899999999999999999999999999998876
Q ss_pred -ecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 314 -LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 314 -~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+-.++|.++..||..+++|+||.|.-|+|+|+
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 8899999999999999999999999999999985
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-13 Score=120.05 Aligned_cols=272 Identities=19% Similarity=0.317 Sum_probs=187.4
Q ss_pred CccccEEEEEECCCCCe-EEEeeCCCcEEEEeccCCCeeeEEEeCccc-ceeEE-EEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTV-IASGSHDRDIFLWHVHGDCKNFMVLKGHKN-AILDL-HWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~-~v~~~-~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
+|....+.|..+|||++ ||||-.--.|++|++..- -..+..|.+ .+..+ -.+.|-..++--..|.+|.+..-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 57788899999999986 577778889999998532 123344433 33333 344444455555667777654321
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
|..-. + --+.+..+++.+...-.+++.|+ ...|.-+++.++..+..+... ..++++..++....+++|+.+|.|..
T Consensus 125 G~hy~-~-RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 125 GRHYR-T-RIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred Ceeee-e-ecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 21100 0 01122233444444444555444 346777899999888887665 67999999999999999999999999
Q ss_pred EeCCCCceEEEec------CCCC-----ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 211 WDLRKGEVSMTLQ------GHQD-----MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 211 wd~~~~~~~~~~~------~~~~-----~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
||.|....+..+. .|.. .|+++.|+.+|-.+++|..+|.+.|||+|...+. ....| ...-++
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~~kdh--~~e~pi 274 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----LVKDH--GYELPI 274 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----eeccc--CCccce
Confidence 9998765544432 2222 4899999999999999999999999999964432 22233 345678
Q ss_pred EEEEECCC--CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 280 LKCGWSPD--GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 280 ~~~~~s~~--g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
..+.|.+. +..|++. ....++|||-.+|+....+.. ...++++++-|+..++.++-.++.+
T Consensus 275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred eeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcc
Confidence 88889765 3445444 445799999999998877654 3459999999999999998887654
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=8.7e-15 Score=115.60 Aligned_cols=241 Identities=17% Similarity=0.320 Sum_probs=150.7
Q ss_pred Eec-CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC-----CC----EEEEecCC
Q 019006 52 LLT-GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD-----GS----QIISASPD 121 (347)
Q Consensus 52 ~~~-~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~----~l~s~~~d 121 (347)
.++ .|...|+.+.--|+ ..|.+-+.|..+.+|++.... ...-|.-.+.++-|.+. ++ .++.-+..
T Consensus 50 ~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~----~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg 124 (323)
T KOG0322|consen 50 LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA----FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG 124 (323)
T ss_pred hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc----eEEEeeeeccccccccceeccCCCcchhheecCCcc
Confidence 455 46677888888786 667789999999999986421 12223333344444321 11 11111100
Q ss_pred C-eEEEEECCCCceeeeee----ccCcceeEee--cCCCCCCEEEEEcCCCceEEEeCCCCCceeec-----------CC
Q 019006 122 K-TLRAWDVETGKQIKKMA----EHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-----------PD 183 (347)
Q Consensus 122 g-~i~iwd~~~~~~~~~~~----~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-----------~~ 183 (347)
. .+.+=|......+.... ...+.+.+.. .......++++|..+|.+.+||+.++..+-.+ .+
T Consensus 125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 0 01111111111111000 0111222211 11122347888999999999999886433222 34
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC--ceE--EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG--EVS--MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~--~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
+.++.++.+.+....=++|+.+..+..|++.-. .+. .++.-.+-.|..+.+.||++.+||+|.|+.|++|..++..
T Consensus 205 ~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 567999999887777788899989999987533 211 1111112347889999999999999999999999998643
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
+ +..++.|. ..+.+++|+|+...+|++|.|+.|.+|++
T Consensus 285 p----LAVLkyHs----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 P----LAVLKYHS----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c----hhhhhhhh----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3 44555553 67999999999999999999999999985
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.6e-13 Score=111.39 Aligned_cols=226 Identities=14% Similarity=0.181 Sum_probs=167.1
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
..+|++.+|++|...++.+-.+..|.||.....+ ...++..|...+..+.+.+.. +.+++++.|..-.+|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCC
Confidence 4689999999999999999999999999876654 567788899999988888775 468999999999999985433
Q ss_pred c----eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce----EEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 177 A----IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV----SMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 177 ~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
. +..+......+++.|+|.++.|++|+.-..|.||=++.... .+.-+.+.+.|++++|+|++-.|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 2 22334556789999999999999999999999986653321 112234567799999999999999999999
Q ss_pred cEEEEeCCC----CCCc----------CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-eeEE
Q 019006 249 KLCIWDMRP----YAPQ----------NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR-ILYK 313 (347)
Q Consensus 249 ~i~~wd~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~-~~~~ 313 (347)
..+++...- .++. +.....+. ...+.+..+.|+|+|..|+-.+.|..+.+-|..... .+..
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~----~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS----SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc----cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999996420 0000 00111110 113468899999999999999999999999987664 3333
Q ss_pred ecCCccCeeeEEEcCCC
Q 019006 314 LPGHTGSVNESVFHATE 330 (347)
Q Consensus 314 ~~~h~~~v~~~~~~~~~ 330 (347)
...-.-+..++.|..+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 33333556677775554
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=2.4e-11 Score=106.71 Aligned_cols=276 Identities=13% Similarity=0.238 Sum_probs=171.0
Q ss_pred EEEeeCC----CcEEEEeccCCCeeeEEEe--CcccceeEEEEcCCCCEEEEecC----CCeEEEEECCCC--c--eeee
Q 019006 72 IASGSHD----RDIFLWHVHGDCKNFMVLK--GHKNAILDLHWTTDGSQIISASP----DKTLRAWDVETG--K--QIKK 137 (347)
Q Consensus 72 l~s~~~d----~~v~~w~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~~ 137 (347)
+++|+.. +.|+.|+++.....+.... .-......++++|++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455555 6788888743333322211 12234567889999999998866 578999987654 2 2233
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----c-----------CCCCceEEEEEcCCCCeEEEE
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----F-----------PDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~-----------~~~~~v~~~~~~~~~~~l~~~ 202 (347)
..........++..+++..++++-..+|.+.++++.....+.. + +......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323333345666777766777767899999999986432221 1 112357789999999988876
Q ss_pred ec-CCcEEEEeCCCCc--eE--EEecC-CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 203 GI-DNDVKVWDLRKGE--VS--MTLQG-HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 203 ~~-dg~i~iwd~~~~~--~~--~~~~~-~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
.. ...|++|++.... .. ..+.. .....+.+.|+|+++++++.. .++.|.++++....................
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 53 3479999987654 21 12221 223467899999999886654 567899999873222222233332221111
Q ss_pred c--cceEEEEECCCCCEEEEee-CCCeEEEEeCC--Cce--eeEEecCCccCeeeEEEcCCCCEEEEec-CCCcEEeecC
Q 019006 276 E--KNLLKCGWSPDGSKVTAGS-SDRMVYIWDTT--SRR--ILYKLPGHTGSVNESVFHATEPVIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 276 ~--~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~~ 347 (347)
. .....+.++|||++|.++. ..+.|.+|++. ++. .+..++........++++|++++|+.+. .++.|.++++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 1 2567888999999988765 56789999983 233 3444544445589999999999888766 5678888763
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=124.71 Aligned_cols=164 Identities=21% Similarity=0.359 Sum_probs=123.9
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-eccCcceeEeecCCC-CCCEEEEEcCCCceEEEe
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM-AEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd 171 (347)
..+.||++-|.+++|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|.|. +..++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 357899999999999999999999999999999999877776665 467888888877664 445789999999999999
Q ss_pred CCCCCc----------eeecC-CCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceE-EE---------ecCCCCce
Q 019006 172 MRQRGA----------IQTFP-DKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVS-MT---------LQGHQDMI 229 (347)
Q Consensus 172 ~~~~~~----------~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~---------~~~~~~~i 229 (347)
+...+. ...+. +...|..++..|.+ ..+.++++||+|+.||+|..... .. +...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 874211 11111 23457778888887 67889999999999999863211 11 11111235
Q ss_pred eEEEECCCC-CEEEEEcCCCcEEEEeCCC
Q 019006 230 TGMSLSPDG-SYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 230 ~~v~~~~~~-~~l~t~~~d~~i~~wd~~~ 257 (347)
.++.++|.. .+|++|+.|-..++||.|.
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 678899964 5788999999999999653
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=2.1e-13 Score=109.02 Aligned_cols=147 Identities=12% Similarity=0.279 Sum_probs=101.9
Q ss_pred EEEEEcCCCCeEEEEec----------CCcEEEEeCCCC-ceEEEecC-CCCceeEEEECCCCCEEEEE--cCCCcEEEE
Q 019006 188 TAVSFSDASDKIYTGGI----------DNDVKVWDLRKG-EVSMTLQG-HQDMITGMSLSPDGSYLLTN--GMDCKLCIW 253 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~-~~~~~~~~-~~~~i~~v~~~~~~~~l~t~--~~d~~i~~w 253 (347)
..+.|++.|.+|+.-.. -+...+|.++.. .....+.- ..++|.+++|+|+|+.+++. ..++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 34677888877664322 123445544321 22223322 23469999999999987654 456799999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC---CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS---DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
|++ ...+..+. ...+..+.|+|+|++|++|+. .|.|.+||..+.+.+.+.. |. .+..++|+|++
T Consensus 89 d~~-----~~~i~~~~------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVK-----GKKIFSFG------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG 155 (194)
T ss_pred cCc-----ccEeEeec------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence 985 22233332 134567899999999999874 4679999999988887764 33 47899999999
Q ss_pred CEEEEecC------CCcEEeecC
Q 019006 331 PVIGSCSS------DKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~------D~~i~i~~~ 347 (347)
+++++++. |..++||++
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CEEEEEEeccceeccccEEEEEe
Confidence 99998874 788888874
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=3.1e-11 Score=106.06 Aligned_cols=284 Identities=16% Similarity=0.150 Sum_probs=167.3
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~ 129 (347)
..+......-..+.|+|||+++.+++.||.|.++|+... +....++.- ....++++++||++++++. .++.+.++|.
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 344433333345779999999999999999999999643 344444432 3457899999999998775 6899999999
Q ss_pred CCCceeeeeeccC-------cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eecCCCCceEEEEEcCCCCeEE
Q 019006 130 ETGKQIKKMAEHN-------SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 130 ~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
++.+.++.+.... ..+..+..++..+.++++--..+.|.+.|....+.. ..+..........|+|++++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 9988887765432 233444445555445555555688888887654433 3333444567789999999877
Q ss_pred EE-ecCCcEEEEeCCCCceEEEec----CCCCceeEEEECCCC-CEEEEEc---------CCCcEEEEeCCCCCCcCcee
Q 019006 201 TG-GIDNDVKVWDLRKGEVSMTLQ----GHQDMITGMSLSPDG-SYLLTNG---------MDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 201 ~~-~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~v~~~~~~-~~l~t~~---------~d~~i~~wd~~~~~~~~~~~ 265 (347)
++ ..++.|-++|.++++....+. .|..++..+- +|.. ...++.+ ....+.+||.. ..+.+
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~----~wkvv 262 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY----AWKVV 262 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTT----BTSEE
T ss_pred ecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeeccccceecccccCCccccchhh----cCeEE
Confidence 64 567789999999887766543 2333333332 2322 1122221 12234455544 23455
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEe----eCCCeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEec--C
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAG----SSDRMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSCS--S 338 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sg----s~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s--~ 338 (347)
+.+.... .-.-+.-||++++|.+. ...+.|.++|..+.+.+.++.... ..+..+.|+++++.+-.+. .
T Consensus 263 ~~I~~~G-----~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 263 KTIPTQG-----GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEE-SS-----SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred EEEECCC-----CcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 5555432 12445569999999988 455899999999998887775332 3589999999999554443 4
Q ss_pred CCcEEeec
Q 019006 339 DKQIYLGE 346 (347)
Q Consensus 339 D~~i~i~~ 346 (347)
++.|.++|
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 44688876
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.8e-14 Score=118.73 Aligned_cols=253 Identities=20% Similarity=0.275 Sum_probs=181.7
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee-ccCcceeEeecCCC-CCCEEEEEcCCCceEEEe
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd 171 (347)
..|..|.+.|..+.|+..|+.|++++.|..|.+||...+.....+. +|...+....|.|. +..-+++.+.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 4578999999999999999999999999999999998877655543 45554544444443 234578889999999876
Q ss_pred CCCCC----ceeecCCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEE---ecCCCC---ceeEEEECCCCC-
Q 019006 172 MRQRG----AIQTFPDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMT---LQGHQD---MITGMSLSPDGS- 239 (347)
Q Consensus 172 ~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~---~i~~v~~~~~~~- 239 (347)
+...+ .....++...+..++..|+.. .|++++.|+.+.-+|++.+..... -..+.. ...+++..|.+.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 54322 223346778899999888765 578999999999999987653322 223333 467889999765
Q ss_pred EEEEEcCCCcEEEEeCCCCCCc--CceeEEEecccc--ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC--c-----
Q 019006 240 YLLTNGMDCKLCIWDMRPYAPQ--NRCVKILEGHQH--NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS--R----- 308 (347)
Q Consensus 240 ~l~t~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~--~----- 308 (347)
++++++.|..+++||.+..... ...+..+..+.. .....|.+++|+.++.-|.++-.|-.||+|.... +
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 8899999999999998864322 111222222211 2234688999998888888888888999996433 2
Q ss_pred -----eeeEE-ecCCccC--eeeEE-EcCCCCEEEEecCCCcEEeec
Q 019006 309 -----RILYK-LPGHTGS--VNESV-FHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 309 -----~~~~~-~~~h~~~--v~~~~-~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+.+ ++||.+. |..+- |.|...+++|||.=|.|.|||
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22333 7899653 55555 577788999999999999997
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=3.5e-12 Score=104.14 Aligned_cols=272 Identities=14% Similarity=0.290 Sum_probs=176.1
Q ss_pred ccEEEEEECCCCCe-EEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTV-IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~ 135 (347)
..|.-+.|..+..+ |.....|+.|.+|++.. ..-...+..-.+++.++.|||||+.| .+...|-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 46777889888765 55567889999999963 23334456667789999999999655 56778999999998875432
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEE-----------------------------------cCCCceEEEeCCCCCceee
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSG-----------------------------------SDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------------------------~~d~~i~iwd~~~~~~~~~ 180 (347)
. +......+...++++++....+.. -++..+.+||---.-.+..
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 1 111112223344444443211111 1123345565433333333
Q ss_pred cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE-----------------------------------------
Q 019006 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS----------------------------------------- 219 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------------- 219 (347)
+.....+..++|+|.++++++|+.|+.+|+-+--+-+..
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 344456888999999999999999999887542211000
Q ss_pred -------------------EEec------CCCCceeEEEECCCCCEEEEEcC--CCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 220 -------------------MTLQ------GHQDMITGMSLSPDGSYLLTNGM--DCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 220 -------------------~~~~------~~~~~i~~v~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
..++ ...-.+.-++|++|..+++|-.. -+.+-+||++..+.. ..+.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~----avLi--- 359 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH----AVLI--- 359 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh----hhhh---
Confidence 0000 00112456899999999998654 367899999853321 1111
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
....|....|+|....|+.......+|+|.......+ ..++..=.|..+.|+-++..|+-++.|.-
T Consensus 360 --Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 360 --QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred --hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 1246888899999998888877778999987664444 33444457999999999999999999853
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=4.1e-12 Score=115.02 Aligned_cols=232 Identities=20% Similarity=0.243 Sum_probs=149.4
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.+++..+. ....+..+...+....|+|||++|+.+..+ ..|++||+.+++... +...........+++++..
T Consensus 171 ~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4777776432 233455566678899999999999877644 479999998875432 2233344445677787766
Q ss_pred EEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-N--DVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++ .|.+||+.++.......+........|+|+++.++..+.. + .|+++|+.+++.. .+..+......
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~ 326 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNAS 326 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccC
Confidence 666666555 5888898876544333333334567899999988765543 3 5888888776543 33334455678
Q ss_pred EEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC---eEEEEeC
Q 019006 232 MSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR---MVYIWDT 305 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~ 305 (347)
+.|+|++++++.++.++ .|.+||+.... ...+.... ......|+|||++|+..+.++ .+++.+.
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-----ERVLTDTG-----LDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCC-----eEEccCCC-----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 89999999999887765 78888876421 12222111 123457999999998877653 4666664
Q ss_pred CCceeeEEecCCccCeeeEEE
Q 019006 306 TSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~ 326 (347)
. +.....+..+.+.+...+|
T Consensus 397 ~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 D-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CceeeECCCCCCCcCCCCC
Confidence 4 4445556555555655555
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.2e-12 Score=116.36 Aligned_cols=220 Identities=14% Similarity=0.169 Sum_probs=137.9
Q ss_pred ecCccccEEEEEECCCCCeEEEee---CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCC--eEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGS---HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDK--TLRA 126 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg--~i~i 126 (347)
+..+...+...+|+|+|+.||..+ .+..+++|++.+.. ...+......+....|+|||+.|+.. +.+| .|.+
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 444566889999999999888654 24568899886432 12222233344568999999988754 4454 5888
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE--eCCCCCceeecCCCCceEEEEEcCCCCeEEEEec
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW--DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
||+.+++.. .+..+...+....+++++..++++...++...+| |+.++................|+|+++.++..+.
T Consensus 272 ~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 272 MDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 999877643 3333344455677788776555555555555555 6655543322222334567889999999876554
Q ss_pred C---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCc---EEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 205 D---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK---LCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 205 d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~---i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+ ..|++||+.+++... +... .......|+|||+.|+..+.++. +.++++.. .....+..+ ...
T Consensus 351 ~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-----~~~~~l~~~----~~~ 419 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-----RFKARLPAT----DGQ 419 (429)
T ss_pred cCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-----CCeEECccC----CCC
Confidence 3 358889998776432 3221 22356789999999999887764 56666642 222333333 234
Q ss_pred eEEEEECC
Q 019006 279 LLKCGWSP 286 (347)
Q Consensus 279 ~~~~~~s~ 286 (347)
+...+|+|
T Consensus 420 ~~~p~Wsp 427 (429)
T PRK03629 420 VKFPAWSP 427 (429)
T ss_pred cCCcccCC
Confidence 55566776
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=3.3e-14 Score=120.59 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=173.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.-..+.++.+|++|+.++..|.+..+|..+++....+.. ...|.++.+..... +++......+.+||-. +..+.-+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ--FFAVAQKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH--HHHhhhhceEEEecCC-CcEEeeh
Confidence 346788999999999999999999999999887665532 23455555544432 3344566778889853 4455556
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.....+..+.|-|---.|++++..|.++--|+.+|+.+..+..-.+.+..|+-+|-+..+-+|...|+|.+|.....++.
T Consensus 207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 66678899999998888899999999999999999998888777788888999999999999999999999986643332
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
. + +..| ...|.++++.++|.|+||.+.|..++|||++.-..+..+.. .-....++||..+-+. +|....
T Consensus 287 v---K-iLcH----~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA--~~~G~~ 355 (545)
T KOG1272|consen 287 V---K-ILCH----RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLA--LSYGDH 355 (545)
T ss_pred H---H-HHhc----CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccccee--eecCCe
Confidence 2 1 2222 46789999999999999999999999999998765554443 3456777888776433 333334
Q ss_pred EEee
Q 019006 342 IYLG 345 (347)
Q Consensus 342 i~i~ 345 (347)
|.||
T Consensus 356 v~iw 359 (545)
T KOG1272|consen 356 VQIW 359 (545)
T ss_pred eeee
Confidence 5555
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.2e-12 Score=116.84 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=131.0
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCC--eEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDK--TLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~ 125 (347)
.+..|...+.+.+|+|+|+.|+..+.+ ..|++|++.+... ..+..+........|+|||+.|+ +.+.+| .|+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 455667789999999999999887643 4699999864322 23333444455789999999875 445555 599
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+||+.+++. ..+..+........+++++..++++...++. |.++|+.+++..............+|+|+++.++..+
T Consensus 276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 999988764 3444444444456777777656555555555 5556766554332222223344689999999988765
Q ss_pred cCC---cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCC
Q 019006 204 IDN---DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMR 256 (347)
Q Consensus 204 ~dg---~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~ 256 (347)
.++ .|.+||+.+++.. .+. +........|+|+|++++..+.+ +.|.++|+.
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 433 5999999877654 332 22234567999999988766543 357777764
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.8e-12 Score=112.71 Aligned_cols=234 Identities=17% Similarity=0.238 Sum_probs=147.0
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CC--eEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.+.++|..+.. ...+..+...+.+..|+|||++|+..+. ++ .|.+||+.+++... +...........+++++..
T Consensus 199 ~l~i~d~dG~~--~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN--EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC--ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 45666665432 2344455667888999999999887653 33 58888988776422 2222222334567788776
Q ss_pred EEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEE-ecCCCCcee
Q 019006 157 LVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMT-LQGHQDMIT 230 (347)
Q Consensus 157 ~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~-~~~~~~~i~ 230 (347)
++++.+.++. |.++|+.++.......+........|+|+++.++..+. ++ .|+++|+.+++.... ..+ ....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~ 353 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNL 353 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCc
Confidence 7777777775 67778876654433333345567899999998876553 33 577778877764332 222 2234
Q ss_pred EEEECCCCCEEEEEcC-CCc--EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-C--eEEEEe
Q 019006 231 GMSLSPDGSYLLTNGM-DCK--LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-R--MVYIWD 304 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-g--~i~vwd 304 (347)
..+|+|+|++++..+. ++. |.++|+.... ...+.... .. ....|+|||++|+..+.+ | .+++++
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-----~~~lt~~~--~d---~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA-----MQVLTSTR--LD---ESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCC-----eEEccCCC--CC---CCceECCCCCEEEEEEecCCceEEEEEE
Confidence 5789999999877654 343 4455655321 12222111 11 134699999998775543 3 478888
Q ss_pred CCCceeeEEecCCccCeeeEEEcCC
Q 019006 305 TTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 305 ~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
. ++....+++.+.+.+...+|+|-
T Consensus 424 ~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 424 I-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred C-CCCceEECcCCCCCcCCCccCCC
Confidence 6 56667778777778888889874
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.4e-12 Score=104.27 Aligned_cols=149 Identities=23% Similarity=0.414 Sum_probs=106.1
Q ss_pred eEEEEcCCCCEEEEecC----------CCeEEEEECCC-Cceeeeeec-cCcceeEeecCCCCCCEEE-EEcCCCceEEE
Q 019006 104 LDLHWTTDGSQIISASP----------DKTLRAWDVET-GKQIKKMAE-HNSFVNSCCPSRRGPPLVV-SGSDDGTAKLW 170 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-s~~~d~~i~iw 170 (347)
..+.|+++|++|+.-.. -+...+|.++. +.....+.. ....|.+++++|.+..+++ .|..+..+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45779999887664322 13355555522 222333322 2345899999998876644 45677899999
Q ss_pred eCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-
Q 019006 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM- 246 (347)
Q Consensus 171 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~- 246 (347)
|++ ...+..+. ...++.+.|+|+|+++++++.+ |.|.+||.++.+.+.+.. |. .++.++|+|+|++++++..
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEec
Confidence 997 55555554 3567889999999999988744 669999999877776654 33 4789999999999999864
Q ss_pred -----CCcEEEEeCC
Q 019006 247 -----DCKLCIWDMR 256 (347)
Q Consensus 247 -----d~~i~~wd~~ 256 (347)
|+.++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 7888999874
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=5e-13 Score=123.75 Aligned_cols=182 Identities=13% Similarity=0.239 Sum_probs=147.3
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCCCce-----EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCcee
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI-----TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
..++.++.++.+.+||...........+.... .-+.++++.-++++|+.-+.|.+|+.........+.+|.+.|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF 179 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF 179 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceE
Confidence 46777888899999999887777666655432 2233556666889999999999999875555557899999999
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
++.++.+|+++++.+.|+++++|++.+.+... .+.-.+...++.+.|.|. ++++++.|.+.++|+.. +..
T Consensus 180 ~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~ 249 (967)
T KOG0974|consen 180 SIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ 249 (967)
T ss_pred EEEEccCCcEEEEEecCcceeeeecccccccC-------cccccccceeEEEEeccc--eeEEeccceEEEEEecc-cce
Confidence 99999999999999999999999998654322 122234578999999998 99999999999999654 444
Q ss_pred eEEecCCc-cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 311 LYKLPGHT-GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 311 ~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+..+.+|. +.|+.++.++...+..|++.|+.+++|++
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 55888886 56999999999999999999999999984
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.6e-12 Score=105.28 Aligned_cols=194 Identities=14% Similarity=0.238 Sum_probs=132.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCC-EEEEecCCCeEEEEECCC---
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGS-QIISASPDKTLRAWDVET--- 131 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~--- 131 (347)
+..+..++|++.-..+|++..|-.|++|+-..++.. .++ .....|++++|-|.+. .|+.|+. +-|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt--~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT--KLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCc--eecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 356788999997788999999999999987553322 222 2345799999999654 4555555 4588997542
Q ss_pred -Cceee----------eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeE
Q 019006 132 -GKQIK----------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKI 199 (347)
Q Consensus 132 -~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l 199 (347)
++.++ .-.+| ..|.++.+.+++..++-+.-.|..|.+||..++..+... .....++-+.|+|++.++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11111 11122 467788888887655555556788999999988766554 234578899999999999
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++++.|+..++|............--.+.|...+|+|.|++|+-.... .-++|.+
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl 308 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSL 308 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence 999999999999654332222222223489999999999977654432 3344543
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=2.9e-10 Score=99.89 Aligned_cols=251 Identities=14% Similarity=0.233 Sum_probs=161.3
Q ss_pred ccEEEEEECCCCCeEEEeeC----CCcEEEEeccCCCeee---EEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEEC
Q 019006 58 SAVYTMKFNPAGTVIASGSH----DRDIFLWHVHGDCKNF---MVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDV 129 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~----d~~v~~w~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~ 129 (347)
....-|+++|++++|.+... ++.|..|.+..+...+ ............++.+|++++|+++. .+|.+.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34556788999999988876 5689999886542222 22222234556799999999998886 4899999999
Q ss_pred CC-Cceeee--ee-----------ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--cee----ecCCCCceEE
Q 019006 130 ET-GKQIKK--MA-----------EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQ----TFPDKYQITA 189 (347)
Q Consensus 130 ~~-~~~~~~--~~-----------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~----~~~~~~~v~~ 189 (347)
.. +..... .. ........+.+.+++..++++.-....|.+|++.... ... ..+.......
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 86 333221 11 1123345677778777677766667789999987654 211 2355567889
Q ss_pred EEEcCCCCeEEEEe-cCCcEEEEeCC--CCce--EEEecC----C--CCceeEEEECCCCCEEEEEc-CCCcEEEEeCCC
Q 019006 190 VSFSDASDKIYTGG-IDNDVKVWDLR--KGEV--SMTLQG----H--QDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 190 ~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~----~--~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~ 257 (347)
+.|+|+++++++.. .++.|.+|++. .+.. ...+.. . ......|.++|+|++|+++. .++.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999999887665 56789999887 4422 111111 1 12467899999999988765 457899999954
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEee-CCCeEEEEeC--CCceeeE
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDT--TSRRILY 312 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~--~~~~~~~ 312 (347)
.......+..+... -.....++++|+|++|+++. .++.|.+|+. .+|.+..
T Consensus 277 ~~g~l~~~~~~~~~----G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 277 ATGTLTLVQTVPTG----GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTTTEEEEEEEEES----SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCceEEEEEEeCC----CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 22222222222211 12367889999999998876 5678999965 5666544
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6.8e-12 Score=113.82 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=134.2
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeC---CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCe--E
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSH---DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKT--L 124 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~--i 124 (347)
..+..|...+...+|+|+|+.|+..+. +..|++|++.+.. ...+..+...+....|+|||+.|+ +.+.++. |
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 345678889999999999998887654 4679999986432 234455666778889999999875 5555655 7
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.+||+.+++. ..+..+........+++++..++++...++ .|.++|+..+...........+....|+|+++.++..
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 7778877654 445445444555677777765555544444 5777787665443333334456678899999998876
Q ss_pred ecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC------CcEEEEeCC
Q 019006 203 GID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD------CKLCIWDMR 256 (347)
Q Consensus 203 ~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d------~~i~~wd~~ 256 (347)
+.+ ..|.+||+..+.. ..+. ....+..+.|+|+|+.|+..+.+ ..+.++|+.
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 543 3588888765543 2232 12346788999999988765432 256677764
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.6e-11 Score=110.13 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=148.7
Q ss_pred EEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCE
Q 019006 81 IFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL 157 (347)
Q Consensus 81 v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (347)
|.++|..+. ....+..+...+....|+|||++|+..+.+ ..|.+||+.+++... +...........+++++..+
T Consensus 181 l~~~d~~g~--~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 181 LQRSDYDGA--RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEECCCCC--CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 666666543 233455667788999999999999876543 368899998875432 22222333346677877766
Q ss_pred EEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeEE
Q 019006 158 VVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITGM 232 (347)
Q Consensus 158 ~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~v 232 (347)
+++.+.++ .|.++|+.++................|+|+++.++..+. +| .|+++|+.+++...... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~ 336 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARP 336 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccce
Confidence 66666665 577789887664433333344566789999998776553 33 58888887776432221 11233457
Q ss_pred EECCCCCEEEEEcCC-C--cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCC
Q 019006 233 SLSPDGSYLLTNGMD-C--KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTT 306 (347)
Q Consensus 233 ~~~~~~~~l~t~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~ 306 (347)
.|+|+|++++..+.+ + .|.+||+.... ...+.... .. ....|+|||++|+..+.+ ..|++++..
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-----~~~lt~~~--~~---~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGS-----VRILTDTS--LD---ESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCC-----EEEccCCC--CC---CCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 899999998876643 3 57788876432 12222111 11 134799999999876643 357777875
Q ss_pred CceeeEEecCCccCeeeEEEcCC
Q 019006 307 SRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
+.....+..+.+.+...+|+|-
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CCceEECcCCCCCcCCCccCCC
Confidence 4444566666677888888874
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=6.3e-13 Score=114.88 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=110.1
Q ss_pred CCCeEEEeeCCCcEEEEeccCCC-eeeEEE--eCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCc
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDC-KNFMVL--KGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNS 143 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~--~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 143 (347)
.+--|..|=.-|.|.+.+..... ..+... .-.+..|+++.|-|.++ .++.+-.+|.+.++|..--. ....
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t~ 257 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GATA 257 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCCC
Confidence 34445566666777766653210 000001 11236899999998654 55566789999999862100 0000
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEE-eCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLW-DMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iw-d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (347)
. .....+.. ..+. |..| ...++.++... ..+..++..+|+||+.+||+.+.||.+||||..+.+....
T Consensus 258 p--~~~~~k~~-~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 258 P--SYQALKDG-DQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred C--cccccCCC-CeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 0 01111111 1121 1111 11122222221 2234789999999999999999999999999998877666
Q ss_pred ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 222 LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
++..-+...|++|+|||+|+++||+|.-|.||.+..
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 666667799999999999999999999999999863
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.9e-12 Score=113.72 Aligned_cols=208 Identities=14% Similarity=0.082 Sum_probs=131.6
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeE
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 199 (347)
..|.++|.. +.....+..+...+....+++++..++++...+ ..|.+||+.++................|+|+++.+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 356677764 343444545566677778888876554444333 35999999877654333333456688999999988
Q ss_pred E-EEecCCcEEEE--eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 200 Y-TGGIDNDVKVW--DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 200 ~-~~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+ +.+.+|...+| |+..+. ...+..+........|+|||++|+..+. ++...+|.+..... .. ..+....
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~-~~lt~~g--- 327 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AA-QRVTFTG--- 327 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ce-EEEecCC---
Confidence 6 45677765555 555443 3444445445667899999998876553 46677776542111 11 1111111
Q ss_pred ccceEEEEECCCCCEEEEeeCCC---eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDR---MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
......+|+|||++|+..+.++ .|++||+.+++.. .+..+ .......|+|+++.|+.++.++
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 1223567999999998777554 6999999887654 34322 3346789999999888877554
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.3e-11 Score=100.57 Aligned_cols=240 Identities=17% Similarity=0.265 Sum_probs=151.5
Q ss_pred CccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCC-------------eeeEEEeCcccceeEEEEcCCCCEEEEecC
Q 019006 55 GHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDC-------------KNFMVLKGHKNAILDLHWTTDGSQIISASP 120 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 120 (347)
.-+..|.+|+|-|.+ .-|+.|...| |.+|...... ..+..-++| ..|++|+|.+||..+++++.
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 456789999999965 5677777754 7789764221 011223455 68999999999999999985
Q ss_pred -CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cCCCCceEEEEEcCCCCe
Q 019006 121 -DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASDK 198 (347)
Q Consensus 121 -dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 198 (347)
|..|.|||.+++..+.-.....+.+..+.++|++. .+++++-|+..++|+..+...... .-....|...+|+|+|.+
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 46799999999876554433445566677888775 567789999999996554332222 223348999999999987
Q ss_pred EEE-EecCCcEEEEeCC----CCc-----------eEEEec-----CC----CCceeEEEECCCCCEEEEEcCC------
Q 019006 199 IYT-GGIDNDVKVWDLR----KGE-----------VSMTLQ-----GH----QDMITGMSLSPDGSYLLTNGMD------ 247 (347)
Q Consensus 199 l~~-~~~dg~i~iwd~~----~~~-----------~~~~~~-----~~----~~~i~~v~~~~~~~~l~t~~~d------ 247 (347)
++. .+..-. +|.+. ... .+..++ .. .+.+.+++|.|.|++|++.-..
T Consensus 295 LLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 295 LLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL 372 (445)
T ss_pred EEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence 654 333333 33321 110 111111 11 2467899999999999986433
Q ss_pred --CcEEEEeCCCCCCcCceeEEE-eccccccccceEEEEECC---CCCEEEEeeCCCeEEEEeC
Q 019006 248 --CKLCIWDMRPYAPQNRCVKIL-EGHQHNFEKNLLKCGWSP---DGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 248 --~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~---~g~~l~sgs~dg~i~vwd~ 305 (347)
..|.+||.+..- .+... -+.... ....-+.|+| +|.+|..+-+.|.+.-|++
T Consensus 373 ~k~~i~~fdtr~sp----~vels~cg~i~g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 373 CKLHISRFDTRKSP----PVELSYCGMIGG--EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhcccccC----ceEEEecccccC--CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 346778876321 11111 111110 1122334544 6788888888888888765
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=6e-11 Score=104.23 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=163.7
Q ss_pred EEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecC
Q 019006 72 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPS 151 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 151 (347)
+++-..++.|.+.|... .+....+......-..+.|+|||++++.++.||.|.++|+.+.+.+.++..... ...++.+
T Consensus 9 ~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE-
T ss_pred EEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEc
Confidence 34566789999999753 344455554434445578999999999999999999999999998888865443 4557777
Q ss_pred CCCCCEEEEEcCCCceEEEeCCCCCceeecCC--------CCceEEEEEcCCCCeEEEEec-CCcEEEEeCCCCceE-EE
Q 019006 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--------KYQITAVSFSDASDKIYTGGI-DNDVKVWDLRKGEVS-MT 221 (347)
Q Consensus 152 ~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~-~~ 221 (347)
+++..++++...++.+.++|.++.+.++.++. ..++..+..++....++..-. .+.|.+.|....+.. ..
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 88776777777899999999999888877643 235777777888776665544 578888887665422 22
Q ss_pred ecCCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE-------EE--CCCCCEE
Q 019006 222 LQGHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-------GW--SPDGSKV 291 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--s~~g~~l 291 (347)
............|+|+++|++.+ ..++.|.++|.... ..+..+..-..........+ .| ...+...
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 22234567889999999987765 45678999998742 22222221111111111111 11 1223333
Q ss_pred EEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe----cCCCcEEeecC
Q 019006 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC----SSDKQIYLGEI 347 (347)
Q Consensus 292 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~D~~i~i~~~ 347 (347)
++.-....+.+||....+.+.+++...+. .-++-||+++++... ..+.+|.+.|.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 23223346668899999999999887666 778889999999877 34477887763
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=3.4e-12 Score=104.77 Aligned_cols=246 Identities=14% Similarity=0.257 Sum_probs=166.2
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
...++||.+.|++...-|...-+++.+.|.++++|--....+-.. +...-..+++++.+.++...|+.+-.+|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 356789999999999999899999999999999996532211111 1112245789999999999999999999998886
Q ss_pred CCC----CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec
Q 019006 129 VET----GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 129 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.. -...+....|...+....+... ...+++.+.|..+.---.+.+..+..+......+++.++-. +.+.|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEeccc
Confidence 543 2234445567777777666554 35677777776654333333333322211111122222211 5566777
Q ss_pred CCcEEEEeCC--CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 205 DNDVKVWDLR--KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 205 dg~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
.|.|.+-.+. .-..+.++.+|.+.+.+++|.+....|+++..|..+.+||+.-... ....+.+|. ..+..+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~----~kV~~l 246 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHN----DKVQAL 246 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccch----hhhhhh
Confidence 7776665443 3456778899999999999999999999999999999999864221 122334443 345555
Q ss_pred EECCCCCEEEEeeCCCeEEEEeC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
.+-+--+.|.+++.||.|.+|+.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEec
Confidence 55666778999999999999984
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=7e-12 Score=109.38 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=153.9
Q ss_pred CcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 98 GHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
.|...-+.|..+|||+|++ +|-..-.|++||+.+-.. .|.-|. +.+..+....++-..++.--.|.+|.+-...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc--
Confidence 4666778899999999865 566778999999876432 233232 2222222211111112222344444442211
Q ss_pred CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
.......-...-..++++...--|++++....|+-+++..|..+..+......++++..++-..+|++|+.+|.|-+||.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 11111111112234555555555677777778999999999988888777788999999999899999999999999998
Q ss_pred CCCCCcCcee--EEEeccc-cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC--ccCeeeEEEcCCC
Q 019006 256 RPYAPQNRCV--KILEGHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH--TGSVNESVFHATE 330 (347)
Q Consensus 256 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~ 330 (347)
|..+.....- .....+. .+....+.++.|+.+|-.+++|+.+|.+++||++..+++. ...| +-+|..+.|.+.+
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccC
Confidence 8532211110 0011111 1112358999999999999999999999999999988764 3445 4568899998874
Q ss_pred --CEEEEecCCCcEEeec
Q 019006 331 --PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 331 --~~l~s~s~D~~i~i~~ 346 (347)
+.++|... ..++|||
T Consensus 284 ~q~~v~S~Dk-~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSMDK-RILKIWD 300 (703)
T ss_pred CCceEEecch-HHhhhcc
Confidence 34443322 3467775
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.9e-12 Score=111.35 Aligned_cols=208 Identities=17% Similarity=0.227 Sum_probs=146.0
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEE
Q 019006 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA 189 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~ 189 (347)
|...++|....||.+++|+...++.-..+... +..+..++...|.+.-+.............
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------------~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~- 64 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------------ASLSGTCTYTKWGLSADYSPMKWLSLEKAK- 64 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc-----------------hhccCcceeEEEEEEeccchHHHHhHHHHh-
Confidence 45678999999999999999887764444211 112233445556532111100000000011
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
.-+.+...++-|...|.|.+|+...++....+. .|.+.|+++.++.+-..+.+++.|+.+..|+... .+....
T Consensus 65 -~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~----~~~~~~ 139 (541)
T KOG4547|consen 65 -KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE----KVIIRI 139 (541)
T ss_pred -hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc----ceeeee
Confidence 112244567789999999999999998777665 6888999999999999999999999999999863 223333
Q ss_pred EeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC------CCEEEEecCCCc
Q 019006 268 LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT------EPVIGSCSSDKQ 341 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~s~D~~ 341 (347)
.... ...+.+++.+|||..|++++ +.|++||..+++.+..++||.++|..+.|... ...|.+...+.-
T Consensus 140 ~~~~----~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 140 WKEQ----KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eccC----CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 3322 24577888999999999988 48999999999999999999999999999887 445555555655
Q ss_pred EEeec
Q 019006 342 IYLGE 346 (347)
Q Consensus 342 i~i~~ 346 (347)
+.+|.
T Consensus 214 i~~w~ 218 (541)
T KOG4547|consen 214 ITVWV 218 (541)
T ss_pred eeEEE
Confidence 66653
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=4.3e-11 Score=98.41 Aligned_cols=245 Identities=16% Similarity=0.290 Sum_probs=160.2
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce-----eeeeeccCc------------ceeEeecCCC-CCCEEEEE
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ-----IKKMAEHNS------------FVNSCCPSRR-GPPLVVSG 161 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~------------~v~~~~~~~~-~~~~~~s~ 161 (347)
.+-|.++.|...|++|++|..+|.|-++.-+.... ...++.|.. .+..+.+.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45678999999999999999999999986432211 112222321 2233333332 33456677
Q ss_pred cCCCceEEEeCCCCCcee-----------------------------------ec--CCCCceEEEEEcCCCCeEEEEec
Q 019006 162 SDDGTAKLWDMRQRGAIQ-----------------------------------TF--PDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 162 ~~d~~i~iwd~~~~~~~~-----------------------------------~~--~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.|.+|++|-+..+.... .+ .|...++++.++.|.+.++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999875432110 01 1334588999999888877654
Q ss_pred CCcEEEEeCCCCceEE---EecCC-----CCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc---
Q 019006 205 DNDVKVWDLRKGEVSM---TLQGH-----QDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ--- 272 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~---~~~~~-----~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--- 272 (347)
|-.|.+|++.-....+ .++.+ ..-|++..|+|. .+.++=.+..|+|++-|+|....-....+.++...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 5679999987543322 33333 245888999996 56666677889999999984321111111111110
Q ss_pred -----cccccceEEEEECCCCCEEEEeeCCCeEEEEeC-CCceeeEEecCCc------------cCe---eeEEEcCCCC
Q 019006 273 -----HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT-TSRRILYKLPGHT------------GSV---NESVFHATEP 331 (347)
Q Consensus 273 -----~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~------------~~v---~~~~~~~~~~ 331 (347)
..+-..|..+.|+++|+|+++-+.- +|++||+ ...+.+..++-|. ..| ..++|+-++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1122457788999999999987653 8999998 4455555555553 233 5788999999
Q ss_pred EEEEecCCCcEEeec
Q 019006 332 VIGSCSSDKQIYLGE 346 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~ 346 (347)
.++|||....+++++
T Consensus 343 ~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFN 357 (433)
T ss_pred eEecccccceEEEec
Confidence 999999999988876
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.1e-10 Score=99.04 Aligned_cols=269 Identities=14% Similarity=0.189 Sum_probs=155.1
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-----cCC-----CeEEEEE
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-----SPD-----KTLRAWD 128 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~~d-----g~i~iwd 128 (347)
.++...++++|+++|.+. +..+.|++..... ...... ...+.++.|+|-|.+|.+= -.+ -.+++|+
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~-~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK-VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCc-EEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 367778889998887654 4577888765332 222222 2278899999999888762 122 3477999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEE-----------------
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVS----------------- 191 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~----------------- 191 (347)
++++.....+......-+...++.+. .+++--..+.+.+|++...+.+..--+...++.+.
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 98855443333221111112222221 12222223445555544322111111112233333
Q ss_pred -----------------------------------EcCCCCeEE---EEecC---------CcEEEEeCCCCceEEEecC
Q 019006 192 -----------------------------------FSDASDKIY---TGGID---------NDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 192 -----------------------------------~~~~~~~l~---~~~~d---------g~i~iwd~~~~~~~~~~~~ 224 (347)
|++-+.-|+ +..-| .++++.++....+...+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 333332111 11111 134444444222333332
Q ss_pred CCCceeEEEECCCCCEEEEE--cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---Ce
Q 019006 225 HQDMITGMSLSPDGSYLLTN--GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RM 299 (347)
Q Consensus 225 ~~~~i~~v~~~~~~~~l~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~ 299 (347)
-.++|.++.|+|+++.++++ -.-..+.|+|++- ..+..+. .+.-.++-|+|.|++|+.++-+ |.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~------egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFP------EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCC------CCCccceEECCCCCEEEEeecCCCCCc
Confidence 25789999999999877664 3456899999862 2332222 2344567799999999887754 78
Q ss_pred EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec------CCCcEEeecC
Q 019006 300 VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS------SDKQIYLGEI 347 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~i~~~ 347 (347)
+-|||+.+.+++.++.+-. -+-+.|+|+|.++.|+. -|..++||.+
T Consensus 338 mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred eEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9999999999888876543 34567999999988877 4677888864
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.3e-11 Score=114.51 Aligned_cols=195 Identities=17% Similarity=0.264 Sum_probs=149.2
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE---eecCCCCCCEEEEEcCCCceEEEeCCCC-Cce
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS---CCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAI 178 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~ 178 (347)
|....+..+...++.+..+..+-+||...+..+.++......... ..-.....-++++|+.-+.|.+|+.... .++
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333445556778888888999999999877666555432221111 1112223346889999999999998733 334
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
....|+..+..+.++.++.++++.+.|..+|+|++.+.+... ..-+|...+..++|.|+ +++|++.|.+.++|+...
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 455678899999999999999999999999999999887665 66789999999999987 999999999999997642
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.....+.+|. -+-+++++..++...+++++.|+.+++|++..
T Consensus 248 -----~~l~~y~~h~---g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 -----TQLEVYDEHS---GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----ceehhhhhhh---hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 2233555554 35689999999999999999999999998744
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.41 E-value=4e-11 Score=96.55 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=157.0
Q ss_pred cccEEEEEECC---CCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCc---c---cceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 57 QSAVYTMKFNP---AGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGH---K---NAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 57 ~~~V~~v~~~~---~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h---~---~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
.+.++.|.|.. +|. .|+-+..+|.|.++...... ....+++- + ....++.|++.+..++++..+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 35577777763 455 56778888999998775332 22222221 1 12457889999999999999999986
Q ss_pred EECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceee--cCCCCceEEEEEcCC-CCeEE
Q 019006 127 WDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQT--FPDKYQITAVSFSDA-SDKIY 200 (347)
Q Consensus 127 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~--~~~~~~v~~~~~~~~-~~~l~ 200 (347)
-+...... ++..+.|.-..+.+.++...++++.+|+.|+.+..||+|- +..+.. ..|...|.++.-+|. +.+++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 65544433 3367788888888899888889999999999999999983 222222 234567888777754 56899
Q ss_pred EEecCCcEEEEeCCC-CceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCc-eeEEEecccccccc
Q 019006 201 TGGIDNDVKVWDLRK-GEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNR-CVKILEGHQHNFEK 277 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~ 277 (347)
+|+.|-.|++||.|+ ++++..-. -.+.|+.+.++|.-. .++.+..-+..++-+......... .....+.| ..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h----dS 302 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH----DS 302 (339)
T ss_pred EeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc----cc
Confidence 999999999999994 55544332 236689999988532 233333334466666654222111 11122222 23
Q ss_pred ceEEEEECCCCCEEEEee-CCCeEE-EEeCC
Q 019006 278 NLLKCGWSPDGSKVTAGS-SDRMVY-IWDTT 306 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs-~dg~i~-vwd~~ 306 (347)
-+....|.....+||+++ .|+.++ +|-..
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred eeeccccccccceeeeeeccccceeeeeeec
Confidence 455556655567788865 455544 66433
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.3e-09 Score=88.33 Aligned_cols=269 Identities=11% Similarity=0.208 Sum_probs=172.7
Q ss_pred CCcEEEEeccCCCeee--EEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCC--Cce--eeeeeccCcceeEe
Q 019006 78 DRDIFLWHVHGDCKNF--MVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVET--GKQ--IKKMAEHNSFVNSC 148 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~--~~~~~~~~~~v~~~ 148 (347)
+.-|++|++.+....+ ..+..+....+-|+|+|+.++|.++-.+ |.|..|.++. |+. +............+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987433222 2334566778899999999999988654 6677776654 443 22222222233456
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCCCCCce----eecCCCC----------ceEEEEEcCCCCeEEEEec-CCcEEEEeC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAI----QTFPDKY----------QITAVSFSDASDKIYTGGI-DNDVKVWDL 213 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----~~~~~~~----------~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 213 (347)
+..+++..++.+-...|.|.++-++....+ +...+.. .+-...++|+++++++..- ..+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 667776666666667789999988653322 2222222 2777889999999987653 346999999
Q ss_pred CCCceEEEecC---CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccccccc--cceEEEEECCC
Q 019006 214 RKGEVSMTLQG---HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNFE--KNLLKCGWSPD 287 (347)
Q Consensus 214 ~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~ 287 (347)
..++....-+. ...--+-|.|+|++++..+.. -+++|.+|...+....-..++.+......+. .....+..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 87654322111 122357799999999887765 4789999998764222223333322222222 24556678999
Q ss_pred CCEEEEeeC-CCeEEEEeCCC--cee--eEEecCCccCeeeEEEcCCCCEEEEecCCC-cEEeec
Q 019006 288 GSKVTAGSS-DRMVYIWDTTS--RRI--LYKLPGHTGSVNESVFHATEPVIGSCSSDK-QIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~-dg~i~vwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~-~i~i~~ 346 (347)
|++|.++-. ...|-+|.+.. +++ +...+.+.....++.|++.+.+|+.+..|+ +|.++.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 999988753 33788886543 332 344556666789999999999999888753 466654
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.4e-10 Score=104.03 Aligned_cols=279 Identities=15% Similarity=0.220 Sum_probs=189.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe--------------eeEEEeCcccceeEEEEcCCCCEEEEecCCC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK--------------NFMVLKGHKNAILDLHWTTDGSQIISASPDK 122 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 122 (347)
.....+++|+.+..++|+||.||.+++-.+..... .-..+.||+..|.-+.|+.+...|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 35678999999999999999999999998753211 0135789999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeec--cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 123 TLRAWDVETGKQIKKMAE--HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
.|.+|-+-.+.....+.. ..+.|.+.++..++. .++....||.|.+=.+........--.......+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999877765444433 234566777777665 45566777777665554322211111112345688999999888
Q ss_pred EEecCCcEEEEeCCCCc-------eEEE----ecCCCCceeEEEEC--------CCCCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 201 TGGIDNDVKVWDLRKGE-------VSMT----LQGHQDMITGMSLS--------PDGSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~-------~~~~----~~~~~~~i~~v~~~--------~~~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.+-.+|.+.+||....- +... +......|..+.|. |+...|+.+-..|.+.+..-.. .
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN---D 249 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN---D 249 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC---C
Confidence 88899999999975321 1111 11111235555553 5777888888888887753221 1
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCC---------CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---------RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
..++-.-.+ -.+....|+++|..||.++.+ +.|.+|. .-|+.+..++-....|+.+.|-..+-.
T Consensus 250 ~~Pvv~dtg------m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PEPVVVDTG------MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred CCCeEEecc------cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 111111111 246678899999999988753 3566665 346777788888889999999888876
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
||-+ .|+.|++..|
T Consensus 323 iA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 323 IAIA-VDSFIYFANI 336 (1189)
T ss_pred EEEE-ecceEEEEee
Confidence 6544 5677776543
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=7e-12 Score=122.05 Aligned_cols=192 Identities=17% Similarity=0.313 Sum_probs=144.7
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.-|-..|.+|.=+|.....+||+.||.|++|.......... ...|. ..|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 3445567788888889999999999999999998853322221 22233 789999999999999999999999999876
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEE---cCCCceEEEeCCCC--CceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSG---SDDGTAKLWDMRQR--GAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+.....+.|+....++.|.. .+++++ +.++.+.+||.-.. ...-..-|...++++++-|....+++|+.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 444555566766666655543 234443 35788999996422 211223456789999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
|.|++||++..+..+.++. ++ ...++++++..|.++||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999998777666654 44 5678999999999999998754
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=8.4e-12 Score=111.95 Aligned_cols=283 Identities=17% Similarity=0.244 Sum_probs=191.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-cccceeEEEEcCCC--CEEEEecCCCeEEEEECCCC-
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-HKNAILDLHWTTDG--SQIISASPDKTLRAWDVETG- 132 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~- 132 (347)
.+.+.++..+|.|+-+|.++.-|.. +-++.....+..-+.. ..-.|-.+.|+|.. .+-+..-....-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 3567888999999999999887754 4566544343333321 12246778888753 34444444555678987542
Q ss_pred --ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec-CCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 133 --KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 133 --~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.....+.+|...+.+.-+.+..+..+++++.|-.+..||++... ++... .-......+.|+-....+.+.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 22334567888899999999999999999999999999998643 33332 223456778888777777777778889
Q ss_pred EEEeCCCC-ceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 209 KVWDLRKG-EVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 209 ~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
++||++.+ .+...+++|...|+.++|..- ...+.+.+.|+++++||........ .+...-+..++...|-|
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~-------~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES-------KRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc-------ceeccccCcceeccccc
Confidence 99999876 466788889888999888642 3467889999999999976421111 11111134566667777
Q ss_pred CCC--EEEEeeCCCeEEEEeC---------CC-ceeeEEecCCccCeeeEEEcCCC----------CEEEEecCCCcEEe
Q 019006 287 DGS--KVTAGSSDRMVYIWDT---------TS-RRILYKLPGHTGSVNESVFHATE----------PVIGSCSSDKQIYL 344 (347)
Q Consensus 287 ~g~--~l~sgs~dg~i~vwd~---------~~-~~~~~~~~~h~~~v~~~~~~~~~----------~~l~s~s~D~~i~i 344 (347)
-|. ++.---.+..+.+++. .+ .+.++++.||+..|.+.-|-..+ -.|+|-|.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 443 3332222234444432 22 35678999999999887775433 28999999999999
Q ss_pred ecC
Q 019006 345 GEI 347 (347)
Q Consensus 345 ~~~ 347 (347)
|-|
T Consensus 336 WpI 338 (1081)
T KOG0309|consen 336 WPI 338 (1081)
T ss_pred eec
Confidence 964
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=1.7e-08 Score=87.13 Aligned_cols=262 Identities=10% Similarity=0.102 Sum_probs=153.8
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC----------CCeEEEEECCCCceeeeeeccCc-----
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP----------DKTLRAWDVETGKQIKKMAEHNS----- 143 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~----- 143 (347)
++|.+.|.... +....+..-..+ ..+ ++||++.|+.+.. +..|.+||..+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78888887542 333333322222 124 8999998887755 78999999999998887764222
Q ss_pred --ceeEeecCCCCCCEEEEE-cCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC-CceE
Q 019006 144 --FVNSCCPSRRGPPLVVSG-SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK-GEVS 219 (347)
Q Consensus 144 --~v~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~ 219 (347)
.......++++..++++- +.+..+-+.|+.+++.+..++-......+..++.... +-+.||......+.. ++..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 223456677766555544 3388999999999988877654332222222222211 223444443333221 2111
Q ss_pred -EE---ecCCCCceeE-EEECC-CCCEEEEEcCCCcEEEEeCCCCCCcC-ceeEEEecccc--c-cccceEEEEECCCCC
Q 019006 220 -MT---LQGHQDMITG-MSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQH--N-FEKNLLKCGWSPDGS 289 (347)
Q Consensus 220 -~~---~~~~~~~i~~-v~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~~~~s~~g~ 289 (347)
.. +.....++.. -.|.+ +|+++..... |.|.+.|+....... .....+..... . .....--++++|+++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 1110111100 03344 7888877666 999999975322111 11111111000 0 011222388999999
Q ss_pred EEEEee----------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEec-CCCcEEeecC
Q 019006 290 KVTAGS----------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 290 ~l~sgs----------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~D~~i~i~~~ 347 (347)
.|+... ..+.|.++|..+++.+.++.- ...+..++++|+++ +|..+. .++.|.+.|.
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 988743 225899999999999998874 45799999999998 777555 5787888763
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=2.5e-10 Score=103.40 Aligned_cols=192 Identities=16% Similarity=0.175 Sum_probs=126.1
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCC--eEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDK--TLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~ 125 (347)
.+..+...+...+|+|+|+.||.+..+ ..|++|++.+.. ...+..+...+.+++|+|||+.|+ +.+.++ .|.
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 444566678899999999999877654 479999986432 223344555667789999998776 444444 588
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+||+.++.. ..+..+........+++++..++++...++ .|.++|+.+++...............|+|+++.++.++
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEE
Confidence 889887653 333333333333455666655555554444 47777877655433333344566788999999998887
Q ss_pred cCC---cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 204 IDN---DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 204 ~dg---~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
.++ .|.+||+.++.... +... .......|+|++++|+....++
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 765 78999988765432 2222 2345578999999888776654
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.6e-10 Score=100.94 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=125.6
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCC--eEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDK--TLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~ 125 (347)
.+..+...+...+|+|+|+.|+..+.+ ..|++|++.+... ..+......+....|+|||++|+ +.+.+| .|.
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 344566788999999999988776543 3588888864322 22333334455688999999887 455555 588
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+||+.+++. ..+..+........+++++..++++...++ .|.++|+.+++...............|+|+++.++..+
T Consensus 271 ~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 271 VMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 889887654 334444444444567777766666655544 46666776665332222222234568999999988665
Q ss_pred cC-C--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-C--cEEEEeCC
Q 019006 204 ID-N--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-C--KLCIWDMR 256 (347)
Q Consensus 204 ~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-~--~i~~wd~~ 256 (347)
.+ + .|.++|+.+++....... .......|+|+|+.++-.+.+ + .+.++++.
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 43 3 488899987764332222 223356899999988766543 3 45566653
No 257
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=1e-09 Score=87.55 Aligned_cols=220 Identities=13% Similarity=0.044 Sum_probs=142.4
Q ss_pred CCEEEEecCCCeEEEEECCCCceeee-eeccCccee---EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCc
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKK-MAEHNSFVN---SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQ 186 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~---~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~ 186 (347)
..+|+.||.-|...+|...+.+.... ...+...|. ..|... .-+..++.|.++++.++..+...... .....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~---~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK---FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc---cceeeccCCcceeEEEEecCcccceeeccccc
Confidence 45889999999999999886543222 222222111 112111 22455789999999987654322211 11134
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCc--eEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--VSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
..++.+++++.++++.+....|..|.+.... ... ......+.=.+.+|+.....+|++..||.+.|||+|.......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 7889999999999999999999999886432 122 2223334456788999999999999999999999996543333
Q ss_pred eeEEEeccccccccceEEEEECCCCC--EEEEeeCCCeEEEEeCCCceeeEEec-------CCc-cCeeeEEEcCCCCEE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGS--KVTAGSSDRMVYIWDTTSRRILYKLP-------GHT-GSVNESVFHATEPVI 333 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~sgs~dg~i~vwd~~~~~~~~~~~-------~h~-~~v~~~~~~~~~~~l 333 (347)
....-+.+ .++.+..|.|++.|. +|.-.-.-+.+.|-|+++++..+.+. .|. .-|....|+.++.-+
T Consensus 241 ~~sstrp~---hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 241 EISSTRPH---HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred hhcccCCC---CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence 33333333 467899999998764 45555556789999999876554432 222 236666777666544
Q ss_pred EEec
Q 019006 334 GSCS 337 (347)
Q Consensus 334 ~s~s 337 (347)
-..+
T Consensus 318 ~v~~ 321 (344)
T KOG4532|consen 318 DVKN 321 (344)
T ss_pred cccc
Confidence 4433
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=4.3e-12 Score=110.46 Aligned_cols=280 Identities=17% Similarity=0.274 Sum_probs=185.4
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe------eeEEEeCcccceeEEEEcCCCCEEEEecCCCeE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK------NFMVLKGHKNAILDLHWTTDGSQIISASPDKTL 124 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 124 (347)
..+.||+..|++++--.+.+-+++++.|.+|++|.+..+.. .......|+.+|.++-|..+-+++++ .||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 35779999999988777788899999999999999853211 22456789999999999988887776 47899
Q ss_pred EEEECCCCceeeeeec---cCcc-eeEeecCCCCCCEEEEE-cCCCceEEEeCCCCCceeec-----CC-CCceEEEEEc
Q 019006 125 RAWDVETGKQIKKMAE---HNSF-VNSCCPSRRGPPLVVSG-SDDGTAKLWDMRQRGAIQTF-----PD-KYQITAVSFS 193 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~-----~~-~~~v~~~~~~ 193 (347)
.+||.--++.+..+.. +... +..|..+- +..++++| +...+++++|.+.......+ +. ...+.+++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999766665543322 2211 22222222 33445444 88899999999876654433 22 2457889999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEE-EeCCCCCCcCceeEEEeccc
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI-WDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~ 272 (347)
+.|+.++++-.+|.|.+.|.|+|+.+..+..-.-....++ .|..+.|+....|.++.+ |-.-+. ... +....
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg----imh--~q~kp 958 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG----IMH--LQDKP 958 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC----eee--eccCC
Confidence 9999999999999999999999988776654333333344 466777888888888888 754321 100 10000
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeC-CC---ceeeEEec--CCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT-TS---RRILYKLP--GHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~-~~---~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
..-..-. .-.-|.-|++....+.+.+|-- .. ...+.+++ ...+..+.++.-|-+.-+..+.+.|.|.+
T Consensus 959 ppepahf----lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAHF----LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchhh----hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0000000 0123667777777777888831 11 11222332 23567788888898888888888888875
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.3e-10 Score=98.07 Aligned_cols=266 Identities=15% Similarity=0.218 Sum_probs=151.8
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-----------CCeEEEEEC
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-----------DKTLRAWDV 129 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----------dg~i~iwd~ 129 (347)
+-+.|||.|.+|+|--..| |.+|--.. ...... -.| ..|.-+.|||+.+||+|-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~R-F~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQR-FYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc-HHHHHh-ccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4678999999999987766 55783211 111111 124 35788899999999999763 257999999
Q ss_pred CCCceeeeeec--cCcceeE-eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCe-------
Q 019006 130 ETGKQIKKMAE--HNSFVNS-CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDK------- 198 (347)
Q Consensus 130 ~~~~~~~~~~~--~~~~v~~-~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~------- 198 (347)
.+|...+.+.. ....+.. +.++.++ ++++--.. ..|.+|+...-.++..-+- -..|....|+|.++.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99988777754 2222222 2333333 44443333 5677776543221111000 112333334443333
Q ss_pred ----------------------------------------EEEEec-------CC---cEEEEeCCCCceEEEecCCCCc
Q 019006 199 ----------------------------------------IYTGGI-------DN---DVKVWDLRKGEVSMTLQGHQDM 228 (347)
Q Consensus 199 ----------------------------------------l~~~~~-------dg---~i~iwd~~~~~~~~~~~~~~~~ 228 (347)
|+.--. .| .+.|+.++........-.-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 321100 00 1222322222211111122356
Q ss_pred eeEEEECCCCCEEEEEcC---CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe---eCCCeEEE
Q 019006 229 ITGMSLSPDGSYLLTNGM---DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG---SSDRMVYI 302 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg---s~dg~i~v 302 (347)
|...+|-|.|+.+++.+. ..++.+|-+.........++.+.. ..+..+.|+|.|++++.+ |..|.+.+
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEE
Confidence 778899999998876553 357888887642222233333322 246678899999998875 45788999
Q ss_pred EeCCCceeeE-EecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 303 WDTTSRRILY-KLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 303 wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+|.....+.. -.+.|. ..+.+.|.|.|+++.|++.-
T Consensus 522 ~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EecchhhhhhccCcccc-ccccceECCCCCEEEEeeeh
Confidence 9987533221 223333 45788999999999998853
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1e-09 Score=99.63 Aligned_cols=196 Identities=14% Similarity=0.188 Sum_probs=119.5
Q ss_pred CccccEEEEEECCCCCeEEEeeC-CC--cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEE-ecCCCe--EEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSH-DR--DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIIS-ASPDKT--LRAWD 128 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~-d~--~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~--i~iwd 128 (347)
.+...+....|+|+|+.|+..+. ++ .|++|++.+... ..+...........|+|||+.|+. .+.+|. |.++|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 44556778999999998887654 33 478888754322 122222233456789999998864 456664 77778
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-C
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-D 205 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 205 (347)
+.+++. ..+..+........+++++..++++...++. |.++|+.+++...............|+|+++.++..+. +
T Consensus 293 l~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 293 IATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC
Confidence 877654 3344444444556677777666666655554 55567766554332112222345689999998876554 3
Q ss_pred C--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-C--cEEEEeC
Q 019006 206 N--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-C--KLCIWDM 255 (347)
Q Consensus 206 g--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-~--~i~~wd~ 255 (347)
+ .|.++|+.+++... +... .......|+|+|+.++....+ + .+.+++.
T Consensus 372 g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 372 GKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 4 46667887776433 2221 122345899999987765543 3 3566665
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.5e-09 Score=95.43 Aligned_cols=238 Identities=13% Similarity=0.139 Sum_probs=138.8
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE---EEecCCC--eEEEEECCCCceeeeeeccCcceeEeecCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI---ISASPDK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG 154 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (347)
.|.+.|.++. ....+........+=.|+|||+.+ ++...+| .|.+.++.+++.. .+...........+++++
T Consensus 166 ~l~~~d~dG~--~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQ--NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCC--CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCC
Confidence 4555555432 223343344455667899999752 2444444 5777788776542 222222333345677887
Q ss_pred CCEEEEEcCCC----ceEEEeCCCC---CceeecCCC-CceEEEEEcCCCCeEEEEe-cCCc--EEEEeCCC-CceEEEe
Q 019006 155 PPLVVSGSDDG----TAKLWDMRQR---GAIQTFPDK-YQITAVSFSDASDKIYTGG-IDND--VKVWDLRK-GEVSMTL 222 (347)
Q Consensus 155 ~~~~~s~~~d~----~i~iwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~-~~~~~~~ 222 (347)
..++++...+| .+..|++..+ ...+..... .......|+|+++.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 77766654433 3344676542 222222222 2345679999999877655 4564 44455542 2223344
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC---
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS--- 296 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~--- 296 (347)
..+...+....|+|+|++|+..+.+ ..|.+||+...+. ..+... ...+....|+|||++|+..+.
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~----~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-----YQLTTS----PENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-----EEccCC----CCCccceEECCCCCEEEEEECCCC
Confidence 4444566788999999988866543 3688999864321 122211 123456789999998875433
Q ss_pred CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 297 DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
...|+++|+..++.. ++....+.+...+|+|-.
T Consensus 394 ~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 ESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence 357999999877643 444455667788888754
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1e-09 Score=95.96 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=158.9
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC--EEEE-----ecCCCeEEEEECCCCc
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS--QIIS-----ASPDKTLRAWDVETGK 133 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s-----~~~dg~i~iwd~~~~~ 133 (347)
++..|+.|..+.| --..+.+++|++.+... ...+-|...|..+.++|... .+++ .|.-+.++||......
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~--~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKT--IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccc--eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 5777877665432 22336789998854222 23345677899999998633 3443 3455679999765221
Q ss_pred e-----eeeeeccCcceeEeecCCCCCCEEEEEcC-----------CCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 134 Q-----IKKMAEHNSFVNSCCPSRRGPPLVVSGSD-----------DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 134 ~-----~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
. .+.|... +.| ...+...+..+|+..+. +.++.+.++........+...+.|.++.|++++.
T Consensus 206 ~~~~~a~ksFFka-dkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 206 QHQPVANKSFFKA-DKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred ccchhhhcccccc-cee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence 1 1112111 111 23444444444443332 2467777777555566677788999999999998
Q ss_pred eEEE--EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccc
Q 019006 198 KIYT--GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 198 ~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
.+++ |-.=-++.|||++ +..++.+. .++=+++-|+|.|++++.+|-+ |.|-+||+.+.+ ++..+.
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~--- 353 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFK--- 353 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccc---
Confidence 8775 4455689999986 56666664 3556789999999999988754 789999987532 222222
Q ss_pred cccccceEEEEECCCCCEEEEeeC------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSS------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
.....-+.|+|||++++|++. |+.++||+.. |.++++-.--+ +.+.+.|-|-
T Consensus 354 ---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 354 ---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeeec
Confidence 123556789999999998874 7889999975 44443221111 5777777654
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=4.1e-09 Score=94.11 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=156.4
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeE-EEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCccee
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD-LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN 146 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 146 (347)
++..++.++.++.++.+|.... +....... ...+.+ ... .+..++.++.+|.+..||.++++.+.++........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDG-KELWRAKL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCC-cEeeeecc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 3566778888888888887432 22211111 111211 111 245777788899999999999988776544322110
Q ss_pred ---EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-----c---eEEEEEcC--CCCeEEEEecCCcEEEEeC
Q 019006 147 ---SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-----Q---ITAVSFSD--ASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 147 ---~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 213 (347)
...+.-.+ ..++.+..++.+..+|.++++.+....... . ...+.-+| .+..+++++.+|.++.||.
T Consensus 180 ~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 180 LRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred ecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 00000112 356778888999999998887654322110 0 00000011 2567888889999999999
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA 293 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 293 (347)
.+++....... .. ..... ..+..++.++.||.+..+|..+.+.. ........ ....+.. ..+..|++
T Consensus 259 ~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~----W~~~~~~~---~~~ssp~--i~g~~l~~ 325 (377)
T TIGR03300 259 RSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSEL----WKNDELKY---RQLTAPA--VVGGYLVV 325 (377)
T ss_pred CCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEE----EccccccC---CccccCE--EECCEEEE
Confidence 99987665542 11 12222 24678888889999999998754321 11111000 0111111 14679999
Q ss_pred eeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 294 GSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 294 gs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
++.+|.|+++|..+++++.+++.+...+...-...++ .|..++.||.|+.+
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999999999999999999988766544322222333 47788999999876
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.2e-07 Score=79.28 Aligned_cols=269 Identities=13% Similarity=0.157 Sum_probs=166.9
Q ss_pred CccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEe---CcccceeEEEEcCCCCEEEEecCC-CeEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTDGSQIISASPD-KTLRAW 127 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iw 127 (347)
.+.+.++-|+|+|+++.|.++-.+ |.|--|.++.+...+..+. ....+-+.++.++++++++++... |.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 566778889999999998887654 6677777764322221111 112233789999999999998754 789999
Q ss_pred ECCC-Ccee--eeeeccCcc----------eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee----ecCCCCceEEE
Q 019006 128 DVET-GKQI--KKMAEHNSF----------VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAV 190 (347)
Q Consensus 128 d~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~ 190 (347)
-++. |... ..+..|... +....+.|.+..+++.--.--+|.+|++..++... .++.......+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 3221 112223222 44455556655444444444578899988655432 22344567889
Q ss_pred EEcCCCCeEEEEe-cCCcEEEEeCCCC-ceEEEecCC---------CCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCC
Q 019006 191 SFSDASDKIYTGG-IDNDVKVWDLRKG-EVSMTLQGH---------QDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPY 258 (347)
Q Consensus 191 ~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~---------~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~ 258 (347)
.|+|++++.++.. -+++|.+|..... .....++.+ ......|.++++|++|.++.. ...|.+|.+.+.
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999988766 5788999988763 222222221 234567889999999998754 347888888754
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-eEEEEe--CCCceeeEEec-CCccCeeeEEEc
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-MVYIWD--TTSRRILYKLP-GHTGSVNESVFH 327 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-~i~vwd--~~~~~~~~~~~-~h~~~v~~~~~~ 327 (347)
......+.....+. .......|+++|++|+++..++ .|.+|. ..+|++-.... .......+|.|.
T Consensus 277 ~g~L~~~~~~~teg----~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEG----QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCC----cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 33222222222211 1245667899999999988654 588884 45565432222 233445566654
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=1.1e-08 Score=99.61 Aligned_cols=272 Identities=13% Similarity=0.178 Sum_probs=163.9
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEE----eccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLW----HVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
..+.|.++.|-++...|+.+..+|.|.+. +... ........-...|.+++||||...|+.+..++++.+.+ .+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-cc
Confidence 34689999999999999999999999998 4322 12222233456899999999999999999999988875 33
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--------------eeecCCCCceEEEEEcCCCC
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--------------IQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~v~~~~~~~~~~ 197 (347)
.+.+.+...+.... +....++.+...+=.-|.-..++. ...+..+..-..++|-.||.
T Consensus 151 fd~i~E~~l~~~~~--------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 151 FDPISEVPLDSDDF--------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred ceEEEEeecCcccc--------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 44444332221110 001122222211111111000110 01111233567799999999
Q ss_pred eEEEEec---C---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC---CCcEEEEeCCCCCCcCceeEEE
Q 019006 198 KIYTGGI---D---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM---DCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 198 ~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
++++.+. . ..+|||+- .|....+-..-.+.-.+++|.|.|+++|+.-. ...|.+|.....+ ...+
T Consensus 223 yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-----hgeF 296 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-----HGEF 296 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-----eeeE
Confidence 9998764 2 46999985 46544443333333456899999999998764 3467777643211 1111
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce--eeEEecCC-ccCeeeEEEcCCCCE-EEEecCCCcEEe
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR--ILYKLPGH-TGSVNESVFHATEPV-IGSCSSDKQIYL 344 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h-~~~v~~~~~~~~~~~-l~s~s~D~~i~i 344 (347)
.-........+..+.|++|+..||.--.|. |.+|...+.. +.+.+... ...+..+.|||..++ |.....+|.+..
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 111111234688999999999999977665 9999877654 22333322 234556999998763 445555466544
Q ss_pred e
Q 019006 345 G 345 (347)
Q Consensus 345 ~ 345 (347)
.
T Consensus 376 ~ 376 (928)
T PF04762_consen 376 Y 376 (928)
T ss_pred E
Confidence 3
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=4.4e-10 Score=90.70 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=132.8
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC-Cceee-
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET-GKQIK- 136 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~- 136 (347)
.++.|++.+..++++..+|.+.+-+.. ...+....+++|.-..+-..|+. +-+.+++||.|+.+..||++. ++.+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 466788889899999999999844332 22223346789999999988875 446889999999999999983 33332
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeecCCCCceEEEEEcCCCC--eEEEEecCCcEEEEeC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASD--KIYTGGIDNDVKVWDL 213 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~ 213 (347)
..+.|...|.++..++..+.++++|+.|..|++||.|. ++++..-+..+.|..+..+|.-. .++++-.+| .+|-+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEe
Confidence 24567778888888888888999999999999999984 56666666667899999988643 233444444 556555
Q ss_pred CCC--c---eEEEecCCCCceeEEEECCCCCEEEEEc-CCCcEE-EE
Q 019006 214 RKG--E---VSMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLC-IW 253 (347)
Q Consensus 214 ~~~--~---~~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~-~w 253 (347)
..+ + .....+.|.+....-.|......++|++ .|+.++ +|
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 433 2 2233445666566666644445678765 455533 55
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=2.5e-08 Score=99.05 Aligned_cols=242 Identities=14% Similarity=0.176 Sum_probs=156.1
Q ss_pred EEEEECCC-CCeEEEeeCCCcEEEEeccCCCeeeEEEeC--c------------ccceeEEEEcCCCCEEEEec-CCCeE
Q 019006 61 YTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVLKG--H------------KNAILDLHWTTDGSQIISAS-PDKTL 124 (347)
Q Consensus 61 ~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~--h------------~~~v~~~~~~~~~~~l~s~~-~dg~i 124 (347)
..+++++. +.++++-...+.|.+|+..+... ..+.+ . -.....++++++++.|+.+. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i--~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI--VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE--EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35678764 56777777788899999865421 11111 1 12347889999888666554 56789
Q ss_pred EEEECCCCceeeeeecc-----------------CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-----
Q 019006 125 RAWDVETGKQIKKMAEH-----------------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----- 182 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----- 182 (347)
+++|..++. +..+... -.....+++.+.+..++++.+.+++|++||...+.......
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987654 3333110 01123466666566788888889999999987654321100
Q ss_pred ----------CCCceEEEEEcCCCCeEE-EEecCCcEEEEeCCCCceEEEecC-------------C--------CCcee
Q 019006 183 ----------DKYQITAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQG-------------H--------QDMIT 230 (347)
Q Consensus 183 ----------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~-------------~--------~~~i~ 230 (347)
.-.....++++|+++.++ +-+.++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 012356789999988555 455678999999987653211100 0 01235
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc----------ccccceEEEEECCCCCEEEEeeCCCeE
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH----------NFEKNLLKCGWSPDGSKVTAGSSDRMV 300 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~g~~l~sgs~dg~i 300 (347)
+++++++|+.+++-..++.|++||.... . +..+.+... ..-.....++++++|+++++-+.++.|
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg----~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATK----R-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCC----e-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 7899999998888889999999998632 1 112211100 001245678899999999999999999
Q ss_pred EEEeCCCcee
Q 019006 301 YIWDTTSRRI 310 (347)
Q Consensus 301 ~vwd~~~~~~ 310 (347)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988765
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.2e-09 Score=93.40 Aligned_cols=188 Identities=19% Similarity=0.333 Sum_probs=139.4
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCe--eeEEEeCcccceeEEEEc--------------------CCCCEEEEecCCCeE
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCK--NFMVLKGHKNAILDLHWT--------------------TDGSQIISASPDKTL 124 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~--~~~~~~~h~~~v~~~~~~--------------------~~~~~l~s~~~dg~i 124 (347)
|...++|....||.+++|+...+.. .+.....-++..++..|. .+...++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999854321 111111111222333331 233567788889999
Q ss_pred EEEECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEE
Q 019006 125 RAWDVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYT 201 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~ 201 (347)
.+|++..++....+. .|.+.|........ -..+.+++.|+.+..|+.+....+..... ...+.+++++||+..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999998877665 46667776654433 34688999999999999998887777654 456889999999999988
Q ss_pred EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC-----CCEEEEE-cCCCcEEEEeCCC
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD-----GSYLLTN-GMDCKLCIWDMRP 257 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-----~~~l~t~-~~d~~i~~wd~~~ 257 (347)
++ +.|++||+.+.+.+..+.+|.++|+++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 77 57999999999999999999999999999776 6666654 5566788887653
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=7e-09 Score=93.51 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=118.5
Q ss_pred ccccEEEEEECCCCCeE---EEeeCCC--cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CC----eEE
Q 019006 56 HQSAVYTMKFNPAGTVI---ASGSHDR--DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DK----TLR 125 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l---~s~~~d~--~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg----~i~ 125 (347)
....+.+-+|+|||+.+ ++...+| .|++.++.+... ..+...........|+|||++|+..+. +| .+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 34456677999999742 2444444 466667754322 222333344556789999998886542 23 344
Q ss_pred EEECCCC--ceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEe--CCC-CCceeecC-CCCceEEEEEcCCCCe
Q 019006 126 AWDVETG--KQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWD--MRQ-RGAIQTFP-DKYQITAVSFSDASDK 198 (347)
Q Consensus 126 iwd~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd--~~~-~~~~~~~~-~~~~v~~~~~~~~~~~ 198 (347)
.|++..+ .....+... ........+++++..++++...+|...+|. +.. +.....+. ....+....|+|+++.
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 4776642 122223222 223344577788776666666677656654 432 22222232 2235677899999998
Q ss_pred EEEEecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC---CCcEEEEeCCC
Q 019006 199 IYTGGID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM---DCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~ 257 (347)
++..+.+ ..|.+||+.+++...... ....+....|+|+|+.|+..+. ...|.++|+..
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 8765543 369999998886543322 2335678999999998875432 34678888764
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=1.2e-10 Score=113.71 Aligned_cols=183 Identities=19% Similarity=0.345 Sum_probs=143.3
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (347)
.+..+..++.. .+.++|+.||.+++|.-..++.+..+. ...+++.+.|+.+|+.+..+..||.+.+|... .+....
T Consensus 2210 ~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred ceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 34444444444 467899999999999987777665543 23678999999999999999999999999875 667778
Q ss_pred ecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 222 LQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.+.|.....++.|-. ..+++++ .++.+.+||.-.. +...++. ..| .....++++-|..++|++|+.+|
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-~~~s~v~--~~H----~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-PMNSLVH--TCH----DGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccC-cccceee--eec----CCCceEEEEcCcceEEEecCCcC
Confidence 888988888888865 5667765 4679999996521 1222222 333 45688999999999999999999
Q ss_pred eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 299 MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|++||++..+++..++. ++ ...++.+++..|.|+||++
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 999999999888877664 55 7789999999999999975
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=6e-10 Score=90.71 Aligned_cols=243 Identities=20% Similarity=0.389 Sum_probs=155.1
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--Ce--eeEEEeCcc------------cceeEEEEcCCC--CEEEEe
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CK--NFMVLKGHK------------NAILDLHWTTDG--SQIISA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~--~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~ 118 (347)
..-|+++.|...|.+|++|...|.|.+|.-... |. -+..+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 457899999999999999999999999965321 11 122345553 357788887654 357777
Q ss_pred cCCCeEEEEECCCCc--e-------------------------eeeee----------------ccCcceeEeecCCCCC
Q 019006 119 SPDKTLRAWDVETGK--Q-------------------------IKKMA----------------EHNSFVNSCCPSRRGP 155 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~--~-------------------------~~~~~----------------~~~~~v~~~~~~~~~~ 155 (347)
..|++|++|-+.... . +..+. .|.-.++++.+..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999764320 0 00111 1222334444444432
Q ss_pred CEEEEEcCCCceEEEeCCCCC-c--ee-ecCCC-----CceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCce------E
Q 019006 156 PLVVSGSDDGTAKLWDMRQRG-A--IQ-TFPDK-----YQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEV------S 219 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~-~--~~-~~~~~-----~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------~ 219 (347)
.++ ...|-+|.+|++.--. . +. .-|+. .-|++..|+|... .+.-.+..|.|++-|+|.... .
T Consensus 186 -t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 -TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred -eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 333 4567889999876322 1 11 12332 2478889998754 455677889999999984321 1
Q ss_pred EE--e--------cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-------c-c---c
Q 019006 220 MT--L--------QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-------E-K---N 278 (347)
Q Consensus 220 ~~--~--------~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-------~-~---~ 278 (347)
.. + .+-...|..+.|+++|+++++-+.- ++++||++.. ..++++++.|.... + + .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~---k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMA---KNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccc---cCCceeechHHHHHHHHHhhhhccceee
Confidence 11 1 1112457889999999999887654 8999999753 34556665443211 1 1 2
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
-..+.||-|.+.+++||..+..-+|..
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecCCcccccccccccceeeecc
Confidence 246788999999999998887777753
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=2.1e-08 Score=89.50 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=155.5
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
.+..+++++.++.++.+|.... +......-......... .++..++.++.++.+..+|..+|+.+.+..........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 3678888889999999987432 22222221111111111 24678888889999999999999887665433221111
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE------EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT------AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (347)
... ....++.++.++.+..+|.++++.+..+....... +.... +..++.+..++.+..+|.++++...+
T Consensus 141 p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 141 PLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 011 12356677889999999999888766554332211 11111 34678888899999999999986654
Q ss_pred ecCCCC-------ceeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 222 LQGHQD-------MITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 222 ~~~~~~-------~i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
...... .+..+.-+| .+..++.++.+|.+..+|..+.+. ...... .. ... ...++..|+
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~----~W~~~~--~~----~~~--p~~~~~~vy 283 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV----LWKRDA--SS----YQG--PAVDDNRLY 283 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE----EEeecc--CC----ccC--ceEeCCEEE
Confidence 321100 000011111 356788888899999999875321 111110 00 111 123577888
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCcc-CeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTG-SVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.++.||.++.+|..+++.+.+...-.. ....... .+..+..++.||.|+++|
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 889999999999999998876532221 1122122 355778888999998876
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=4.4e-08 Score=97.26 Aligned_cols=238 Identities=13% Similarity=0.151 Sum_probs=149.9
Q ss_pred EEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeeccC--------------cceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 105 DLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAEHN--------------SFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 105 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
.+++++. ++.+++-..++.|+++|... ..+..+.... .....+++.+.+..++++-...+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5778764 55666767888999999764 3333332200 112334555544445666666788999
Q ss_pred EeCCCCCceeecCC------------------CCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecC------
Q 019006 170 WDMRQRGAIQTFPD------------------KYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQG------ 224 (347)
Q Consensus 170 wd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 224 (347)
+|..++. +.++.. -.....++++|++. .+++.+.++.|++||..++.... +.+
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcccc
Confidence 9986543 222210 01245789999544 45566678899999987764321 111
Q ss_pred ---C------CCceeEEEECCCCCEE-EEEcCCCcEEEEeCCCCCCcCceeE-----------EEecccc----ccccce
Q 019006 225 ---H------QDMITGMSLSPDGSYL-LTNGMDCKLCIWDMRPYAPQNRCVK-----------ILEGHQH----NFEKNL 279 (347)
Q Consensus 225 ---~------~~~i~~v~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~~~~----~~~~~~ 279 (347)
+ -.....|+++|++++| ++.+.++.|++||+..... ..+. .+..... ..-...
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 1234679999998855 4556678999999874321 0000 0000000 001124
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec-------------CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP-------------GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..++++++|..+++-+.++.|++||..++.+..... ++-.....++++++++++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 578899999998999999999999998876553221 1123577899999999999999999999998
Q ss_pred C
Q 019006 347 I 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 887 ~ 887 (1057)
T PLN02919 887 L 887 (1057)
T ss_pred C
Confidence 5
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.8e-09 Score=88.99 Aligned_cols=245 Identities=17% Similarity=0.301 Sum_probs=164.1
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC-CCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV-ETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
+..++||.+.|++...-|-..-+++.+.|.++|||-- +.++....+... +..+....... ....|+.|-..|++.-+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEE
Confidence 3456788888888777777778999999999999943 344433333221 22333333333 33467778888888877
Q ss_pred eCCCC----Cceee-cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc
Q 019006 171 DMRQR----GAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 171 d~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
.+... ...+. ..+...+..+.|+.....+++.+.|..+.---.+++.....+.- ...-+++.+.-. +...|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 65422 22222 23556789999998889999999887665444444432211100 000111111111 555666
Q ss_pred CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-eeEEecCCccCeeeE
Q 019006 246 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR-ILYKLPGHTGSVNES 324 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~ 324 (347)
..|.+..-.+.+. ....+..+.+| .+.+.+++|.|....|.+|..|..+.+||+.-+. ..+.+.+|...|..+
T Consensus 173 ~~gqvt~lr~~~~--~~~~i~~~~~h----~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 173 HSGQITMLKLEQN--GCQLITTFNGH----TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred cccceEEEEEeec--CCceEEEEcCc----ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 6676666555432 22344555555 3678999999999999999999999999987654 446788999999999
Q ss_pred EEcCCCCEEEEecCCCcEEeecC
Q 019006 325 VFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..-+.-+.+.+++.||.|.+|++
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEec
Confidence 99999999999999999999985
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=3.4e-08 Score=85.72 Aligned_cols=275 Identities=11% Similarity=0.149 Sum_probs=171.0
Q ss_pred ccccEEEEEECCCCCeEEEeeCCC---------------cEEEEeccCCCeeeEEEeCcccc--ee-EEEEcCCCCEEEE
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDR---------------DIFLWHVHGDCKNFMVLKGHKNA--IL-DLHWTTDGSQIIS 117 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~---------------~v~~w~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s 117 (347)
....|..+.|+|++.+|.+-+... .+.+||+.+. .....+.+...+ .+ -+.|+-++.+++-
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhh
Confidence 346789999999999999876544 4889998653 333444444444 44 5778888877664
Q ss_pred ecCCCeEEEEECCCCce-eeeeec-cCcceeEeecCCC-CCCEEE-----EEcCCCceEEEeCCCCCceeecCC-CCceE
Q 019006 118 ASPDKTLRAWDVETGKQ-IKKMAE-HNSFVNSCCPSRR-GPPLVV-----SGSDDGTAKLWDMRQRGAIQTFPD-KYQIT 188 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~-~~~~~~-----s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~ 188 (347)
. ....++|+++ ++.. ...+.. ....+....+++. +...++ ..+.++++++|.+.....+....- +..-.
T Consensus 149 v-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred h-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 4 3356889986 3221 111111 1123344444443 122222 245677889998875554433221 11234
Q ss_pred EEEEcCCCCeEEEEe-----------cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeC
Q 019006 189 AVSFSDASDKIYTGG-----------IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDM 255 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~ 255 (347)
.+.|.+.++++++-- ....+++++++...+.... .-.++|..++|.|.++.+++.+ .+-.+.++|+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccc
Confidence 567788887765321 1245788888744444433 4578999999999988776655 6778999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCCCceeeE-EecCCccCeeeEEEcCCCC
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTTSRRILY-KLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~ 331 (347)
+. .....+.. ..-..+.|+|.+++++.++-| |.+-+||....-... .+.+-. ..-+.|+|+++
T Consensus 306 r~-----Nl~~~~Pe------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~q 372 (561)
T COG5354 306 RG-----NLRFYFPE------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQ 372 (561)
T ss_pred cc-----ceEEecCC------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCce
Confidence 73 22222221 123355689999999987765 679999987765443 565433 34456999999
Q ss_pred EEEEec------CCCcEEeecC
Q 019006 332 VIGSCS------SDKQIYLGEI 347 (347)
Q Consensus 332 ~l~s~s------~D~~i~i~~~ 347 (347)
++-+.- .|..|.|||+
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EEEecCCCcccccCcceEEEEe
Confidence 766443 4788999985
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.17 E-value=2.3e-07 Score=80.14 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=140.9
Q ss_pred ECCCCCeEEEeeC----------CCcEEEEeccCCCeeeEEEeCc-------ccceeEEEEcCCCCEEEEecC--CCeEE
Q 019006 65 FNPAGTVIASGSH----------DRDIFLWHVHGDCKNFMVLKGH-------KNAILDLHWTTDGSQIISASP--DKTLR 125 (347)
Q Consensus 65 ~~~~~~~l~s~~~----------d~~v~~w~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~ 125 (347)
++|+|+.|.++.. +..|.+||.... +....+.-- ...-..++++|||++|+.... +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 8999988776655 788999998643 333333211 112347889999999987763 68899
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-----cCC-CCce-EEEEEcC-CCC
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-----FPD-KYQI-TAVSFSD-ASD 197 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-----~~~-~~~v-~~~~~~~-~~~ 197 (347)
+.|+.+++.+.++....... +........+ .-+.||......+........ +.. +..+ ..-.|.+ ++.
T Consensus 132 VvD~~~~kvv~ei~vp~~~~--vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDCYH--IFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EEECCCCcEEEEEeCCCCcE--EEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99999999888776432211 1111111111 223445444433322111110 000 0000 0003344 677
Q ss_pred eEEEEecCCcEEEEeCCCCce-----EEEec-------CCCCceeEEEECCCCCEEEEEc----------CCCcEEEEeC
Q 019006 198 KIYTGGIDNDVKVWDLRKGEV-----SMTLQ-------GHQDMITGMSLSPDGSYLLTNG----------MDCKLCIWDM 255 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~-----~~~~~-------~~~~~i~~v~~~~~~~~l~t~~----------~d~~i~~wd~ 255 (347)
.++.... |.|++.|+..... ...+. .....+.-+++++++++++... ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 7776666 9999999644321 11111 1122334499999999888742 1257999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEee-CCCeEEEEeCCCceeeEEe
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGS-SDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs-~dg~i~vwd~~~~~~~~~~ 314 (347)
... +.+..+.. ...+..++++|||+ +|++.. .++.|.++|..+++.+.++
T Consensus 287 ~t~----kvi~~i~v-----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG----KRLRKIEL-----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC----eEEEEEeC-----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 743 33333321 23678899999999 887666 5788999999999988877
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=3.8e-10 Score=101.61 Aligned_cols=206 Identities=23% Similarity=0.398 Sum_probs=147.8
Q ss_pred eEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+-||..+|+.+.|+|.. ..||+++.|-.+..|++.....++.....-..+...++|+--...+...+....|++||.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 5678999999999999965 689999999999999997766666666555566788999864445555667778999999
Q ss_pred CCC-ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeecCCCCceEEEEEcCCCCeEEEEecC-
Q 019006 130 ETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASDKIYTGGID- 205 (347)
Q Consensus 130 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 205 (347)
..| ..+..++.|...++.+.+.......+++.+.|+++++||..... .....+.++.+..-.+.|-+.-.+.--..
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 765 45667777877888777766555678899999999999976432 23344555666666666655433321111
Q ss_pred -CcEEE---------EeCCC-CceEEEecCCCCceeEEEECCCCC----------EEEEEcCCCcEEEEeCC
Q 019006 206 -NDVKV---------WDLRK-GEVSMTLQGHQDMITGMSLSPDGS----------YLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 206 -g~i~i---------wd~~~-~~~~~~~~~~~~~i~~v~~~~~~~----------~l~t~~~d~~i~~wd~~ 256 (347)
+.+-+ |+..+ .+.++++.||.+.|..+-|...+. .|+|-+.|.++++|-+.
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 13333 33322 356789999999887776654322 69999999999999764
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.13 E-value=3.1e-08 Score=79.26 Aligned_cols=246 Identities=15% Similarity=0.120 Sum_probs=151.1
Q ss_pred EEEEECCC-----CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce
Q 019006 61 YTMKFNPA-----GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 61 ~~v~~~~~-----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
..|.|-|- -..||.||.-|...+|.+..+.........|...|+-+.=.. ....+..++.|.++++.+++-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34566663 358999999999999998755444444555554443221111 123467788999999998765433
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--ee--ecCCCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--IQ--TFPDKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
-.......-.+..+..+++ +.+.++.+....|..|.+..... .. ..+....-.+..|+.....+|++..||++.|
T Consensus 151 ~~~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred cceeeccccceeeeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 2222111112455555554 45777888888999998864432 22 2233344567788888899999999999999
Q ss_pred EeCCCCceEE-----EecCCCCceeEEEECCCCC--EEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-ccceEEE
Q 019006 211 WDLRKGEVSM-----TLQGHQDMITGMSLSPDGS--YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-EKNLLKC 282 (347)
Q Consensus 211 wd~~~~~~~~-----~~~~~~~~i~~v~~~~~~~--~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 282 (347)
||+|.....+ +-..|++.+..+.|++.|. +|+-.-.-+.+.+-|+|++..-.. +.......... ...+...
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCccccccccccccccc
Confidence 9998754333 2345889999999998654 344444456899999997543221 11111110011 1235666
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
.|+.++..+.+.+.+ .+.=|+..++.
T Consensus 309 ~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 309 NFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccCCCcccccccch-hhheeeccccc
Confidence 677777777666655 45556555443
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=7.4e-09 Score=93.24 Aligned_cols=236 Identities=14% Similarity=0.207 Sum_probs=162.3
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---------------eeeeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGK---------------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
....++.|+.+..+|++||.||.+++..+.+.. ..+++.+|+..|.-+.++...+ .+.+...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCc
Confidence 456889999999999999999999998765421 1234567888888787776654 567888999
Q ss_pred ceEEEeCCCCCceeec---CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE-EEecCCCCceeEEEECCCCCEE
Q 019006 166 TAKLWDMRQRGAIQTF---PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS-MTLQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l 241 (347)
.|.+|-+-.+.-...+ ..+..|.+++|+.+|..+.....||.|.+=.++..+.- ..+++. ....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHH
Confidence 9999998877765554 23567899999999999999999998877655433211 122221 23467899999988
Q ss_pred EEEcCCCcEEEEeCCCCC---CcCceeEEEeccccccccceEEEEE--------CCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 242 LTNGMDCKLCIWDMRPYA---PQNRCVKILEGHQHNFEKNLLKCGW--------SPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
+-+-.+|.+.++|....- ....|.-...+...++...+..+.| -||...|+.+-..|.+.+-.-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 888888999999964210 1111211122222222223444444 36889999999999988875544322
Q ss_pred eEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 311 LYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 311 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
-..+. -...|....|+++|..||.+|.|.
T Consensus 252 Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CeEEe-cccEeecceecCCCcEEEEccCcc
Confidence 11221 225688999999999999998653
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=2.1e-07 Score=90.92 Aligned_cols=279 Identities=15% Similarity=0.276 Sum_probs=165.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEecc--------------CCCeee--------EEEeC----------------
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVH--------------GDCKNF--------MVLKG---------------- 98 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~--------------~~~~~~--------~~~~~---------------- 98 (347)
..+|.+++||||+.+||....++++.+-+.+ +..+.. ..+.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 5689999999999999999999998875421 000000 00100
Q ss_pred --------cccceeEEEEcCCCCEEEEecC---C---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC-
Q 019006 99 --------HKNAILDLHWTTDGSQIISASP---D---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD- 163 (347)
Q Consensus 99 --------h~~~v~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~- 163 (347)
+.+.-..++|-.||.++|+.+. . ..+|||+-+ |........-.+.-..++|-|.+ .++++...
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~ 277 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRL 277 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEc
Confidence 2234567889999999998764 2 579999854 55433333223333345666665 46655432
Q ss_pred --CCceEEEeCCCCCceee----c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc--eEEEecCC-CCceeEEE
Q 019006 164 --DGTAKLWDMRQRGAIQT----F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--VSMTLQGH-QDMITGMS 233 (347)
Q Consensus 164 --d~~i~iwd~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~-~~~i~~v~ 233 (347)
...|.+|.-. |-.... + +....+..+.|++++..|+....|. |.+|-..+.. ...++.-. ...+..+.
T Consensus 278 ~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 3455566532 222112 2 2345789999999999999877655 9999887764 22333221 23345589
Q ss_pred ECCCCC-EEEEEcCCCcEEEEeCC----CCC--C--cCceeEEEec-------------------cccccccceEEEEEC
Q 019006 234 LSPDGS-YLLTNGMDCKLCIWDMR----PYA--P--QNRCVKILEG-------------------HQHNFEKNLLKCGWS 285 (347)
Q Consensus 234 ~~~~~~-~l~t~~~d~~i~~wd~~----~~~--~--~~~~~~~~~~-------------------~~~~~~~~~~~~~~s 285 (347)
|+|... .|.....+|.+..+++. ... + ....+..+.+ ....+...+..++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 999643 45555555666554431 100 0 0001111111 111234678899999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCcee--------eEEecC----------CccCeeeEEEcCCCCEEEEecCC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRI--------LYKLPG----------HTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~--------~~~~~~----------h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+++..+++-..||.|.+|....+.. ...+.. -...+..++|..+..+++..+.+
T Consensus 436 ~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 436 PSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred CCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 9999999999999999998543221 112211 13456888888888776666654
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=6.7e-07 Score=80.33 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=123.8
Q ss_pred ceeEEEEcCCCCE-EEEecC---CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCC
Q 019006 102 AILDLHWTTDGSQ-IISASP---DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQR 175 (347)
Q Consensus 102 ~v~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~ 175 (347)
....-.|+|||+. ++..+. +..|.++|+.+++... +...........+++++..++++.+.++ .|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678899999985 554443 3568889998876533 2223333334557788777777665554 5667787766
Q ss_pred CceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-----
Q 019006 176 GAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD----- 247 (347)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d----- 247 (347)
................|+|+++.++..+. .+ .|+++|+.+++....... ... ...|+|+|++++-.+..
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCccc
Confidence 54332223322345679999997776553 33 588889987765332221 111 24899999988766543
Q ss_pred ----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCCCceeeEEecCCccC
Q 019006 248 ----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTTSRRILYKLPGHTGS 320 (347)
Q Consensus 248 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~~~~~~~~~~~h~~~ 320 (347)
..|.+.|+.... .+.+.... ......|+|||+.|+..+.+ ..+.+.++.. ...++++...+.
T Consensus 345 ~~~~~~I~v~d~~~g~-----~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~ 413 (419)
T PRK04043 345 GKNTFNLYLISTNSDY-----IRRLTANG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGK 413 (419)
T ss_pred CCCCcEEEEEECCCCC-----eEECCCCC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCc
Confidence 256777765322 12222211 11246799999988765543 2466777754 333455544455
Q ss_pred eeeE
Q 019006 321 VNES 324 (347)
Q Consensus 321 v~~~ 324 (347)
+..-
T Consensus 414 ~~~p 417 (419)
T PRK04043 414 IQSI 417 (419)
T ss_pred cCCC
Confidence 5443
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=8.8e-08 Score=87.26 Aligned_cols=206 Identities=18% Similarity=0.177 Sum_probs=135.1
Q ss_pred eeEecCccccEEEEEECCCC------------CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC---CC-C
Q 019006 50 IMLLTGHQSAVYTMKFNPAG------------TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT---DG-S 113 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~------------~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~ 113 (347)
+..++-|+..|+.+.|.|.. .+||++.-.|.|.+||... +.....+..|.+++.+++|-+ +. .
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-hhhhhhhcCCCcchhheeeeeccCcchh
Confidence 34567799999999998742 2688899999999999853 233345678889999999976 33 4
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC----CCceeec---CC---
Q 019006 114 QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ----RGAIQTF---PD--- 183 (347)
Q Consensus 114 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----~~~~~~~---~~--- 183 (347)
.|+.-....++.+|+..+|+.+.+..-......++.+.|-+...+..-+..|.+.+-+.-. ..+.+.+ ..
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 5666667789999999999988766544444444555554444444444555555554311 0111110 00
Q ss_pred -----------------CC------ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCC--
Q 019006 184 -----------------KY------QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDG-- 238 (347)
Q Consensus 184 -----------------~~------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~-- 238 (347)
.. -...++|+|.-+.++-...-..+.++|++-..+.....-..+.+.-+.+-|++
T Consensus 207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc
Confidence 00 02235678887777777777889999998766666554444444555666654
Q ss_pred CEEEEEcCCCcEEEEeCC
Q 019006 239 SYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 239 ~~l~t~~~d~~i~~wd~~ 256 (347)
..|++...||.+.+|-.+
T Consensus 287 d~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceEEEEecCCeEEEEEee
Confidence 578889999999999544
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.07 E-value=1e-06 Score=73.77 Aligned_cols=223 Identities=14% Similarity=0.135 Sum_probs=137.6
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-
Q 019006 105 DLHWTT-DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP- 182 (347)
Q Consensus 105 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~- 182 (347)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+.....+..++ .+.. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEeec
Confidence 467887 66666676678999999988775432 22222 33444442334444 4444 445666988765432221
Q ss_pred -----CCCceEEEEEcCCCCeEEEEecC--------CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE-EEcCCC
Q 019006 183 -----DKYQITAVSFSDASDKIYTGGID--------NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL-TNGMDC 248 (347)
Q Consensus 183 -----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-t~~~d~ 248 (347)
.....+.++++++++..++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 23468899999999866655433 457777776 54433332 234578999999998775 566778
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc-
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH- 327 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~- 327 (347)
.|..+++............+.... ......-.+++..+|++.++....+.|.++|.. ++++..+.-....++.++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred eeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 899998863222111111121111 111236678899999998888889999999988 88887776555689999994
Q ss_pred CCCC-EEEEe
Q 019006 328 ATEP-VIGSC 336 (347)
Q Consensus 328 ~~~~-~l~s~ 336 (347)
++.. +++|.
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 5544 44444
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.07 E-value=1e-07 Score=82.73 Aligned_cols=254 Identities=17% Similarity=0.283 Sum_probs=153.1
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCee--eEEEeCcccceeEEEEcCCCC--EEEE-----ecCCCeEEEEECCCC
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKN--FMVLKGHKNAILDLHWTTDGS--QIIS-----ASPDKTLRAWDVETG 132 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s-----~~~dg~i~iwd~~~~ 132 (347)
-+.|+-+..++|=- -...++++++.++... +..++ ...|....|+|.++ .|+. .+.++++++|.+-.+
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence 44555555444322 2235777775332211 11111 25678888998643 3443 467789999998755
Q ss_pred ceeee--eeccCcceeEeecCCCCCCEEEEE----------cCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 133 KQIKK--MAEHNSFVNSCCPSRRGPPLVVSG----------SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 133 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
+.+.. +....+ ..+.+...+..+++-. -....+.+++++....-........|..++|.|.++.++
T Consensus 213 s~l~tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~ 290 (561)
T COG5354 213 SVLVTKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFA 290 (561)
T ss_pred CeeeeeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCcee
Confidence 44322 221111 1223333333332211 122457788887554333334467899999999988776
Q ss_pred EE--ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 201 TG--GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 201 ~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+. -..-.+.++|++.. ....+.. ..=+.+.|+|.+++++.+|-| |.+-+||... ...++..+.+
T Consensus 291 vi~g~~pa~~s~~~lr~N-l~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~~~----- 359 (561)
T COG5354 291 VISGYMPASVSVFDLRGN-LRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAFNG----- 359 (561)
T ss_pred EEecccccceeecccccc-eEEecCC--cccccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEeec-----
Confidence 54 47788999999866 4444432 334668899999999998866 5789998652 1222222322
Q ss_pred ccceEEEEECCCCCEEEEee------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 276 EKNLLKCGWSPDGSKVTAGS------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
.....|.|+||++++.+.. .|..|.|||+.....- +.+.+.|-|.++...+.|.+.
T Consensus 360 -~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 360 -LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 2355678999999988764 3788999997643321 567778888887776666654
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.7e-10 Score=91.25 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=120.6
Q ss_pred EEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-----ceEEEecCCCCceeEEE
Q 019006 159 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-----EVSMTLQGHQDMITGMS 233 (347)
Q Consensus 159 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~v~ 233 (347)
++.+.+..+.+-|+.++- -+.+..+..|.++.|...++.++.|..+|.|..+|+|.. .+...+ -|.+.|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccc-ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhh
Confidence 445566777888887653 345556678888889888999999999999999999864 334444 3778888887
Q ss_pred ECC-CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 234 LSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 234 ~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
.-. ++++|++.+.+|+|++||+|-.+. ...+..+++|..... -.-+-..+....++++++|.+.++|.++++.++.
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~-~~~V~qYeGHvN~~a--~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKC-KKSVMQYEGHVNLSA--YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhc-ccceeeeeccccccc--ccccccccccceEEEccCeeEEEEEecccCceee
Confidence 655 788999999999999999985322 223667777754322 2223346778889999999999999999999998
Q ss_pred EecCC----ccCeeeEEEc
Q 019006 313 KLPGH----TGSVNESVFH 327 (347)
Q Consensus 313 ~~~~h----~~~v~~~~~~ 327 (347)
+++-. +..+..++|.
T Consensus 383 tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 383 TIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCCCCccccccccceehh
Confidence 77643 2234556654
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=2.4e-08 Score=81.51 Aligned_cols=240 Identities=17% Similarity=0.327 Sum_probs=151.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-----eeeeeeccCc------------ceeEeec-CCCCCCEEEEE
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGK-----QIKKMAEHNS------------FVNSCCP-SRRGPPLVVSG 161 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~-~~~~~~~~~s~ 161 (347)
.+.|+++.|...|.+|++|...|.|.+|.-+..+ -...++.|.. .+..+.+ .+.+...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999998654322 1112333321 1222322 23334456667
Q ss_pred cCCCceEEEeCCCCC-------------------ceee-----------------------c--CCCCceEEEEEcCCCC
Q 019006 162 SDDGTAKLWDMRQRG-------------------AIQT-----------------------F--PDKYQITAVSFSDASD 197 (347)
Q Consensus 162 ~~d~~i~iwd~~~~~-------------------~~~~-----------------------~--~~~~~v~~~~~~~~~~ 197 (347)
+.|.+|++|-+..+. ++.. + .|...++++.+..+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999875431 0000 0 1223477888888877
Q ss_pred eEEEEecCCcEEEEeCCCCce---EEEecCCC-----CceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 198 KIYTGGIDNDVKVWDLRKGEV---SMTLQGHQ-----DMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
.++++ .|-.|.+|++..... +..++.|. ..|++..|+|. .+.+.=.+..|.|++-|+|+...-....+.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77654 456799999865432 23344443 35888999996 4455556678999999998432111111111
Q ss_pred e----cccc----ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-ceeeEEecCCc------------cCe---eeE
Q 019006 269 E----GHQH----NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-RRILYKLPGHT------------GSV---NES 324 (347)
Q Consensus 269 ~----~~~~----~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~------------~~v---~~~ 324 (347)
. +... .....+..+.|++.|+++++-+.- +|++||... +.++.+++-|. ..| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1 1111 122456778899999999987764 899999875 45677775553 233 467
Q ss_pred EEcCCCCEEEEecCCCc
Q 019006 325 VFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~ 341 (347)
.|+.+.+.+.+||....
T Consensus 344 sfSgd~~~v~sgsy~NN 360 (460)
T COG5170 344 SFSGDDKHVLSGSYSNN 360 (460)
T ss_pred EecCCcccccccccccc
Confidence 78888888888876544
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=5.2e-07 Score=73.28 Aligned_cols=233 Identities=15% Similarity=0.201 Sum_probs=123.6
Q ss_pred EEECCCCCeEEEeeCCCcEEEEeccCCCeee-EEE---eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 63 MKFNPAGTVIASGSHDRDIFLWHVHGDCKNF-MVL---KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 63 v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
++.+.+|++||.- .|..|.+=....+.... ... +.....=..++||||+..||.+...|+|+++|+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 4567788888754 45555554433221111 111 1122234679999999999999999999999987533 3333
Q ss_pred eccC-------cceeEeecCCCC-----CCEEEEEcCCCceEEEeCCCC--C---ceeecC----CCCceEEEEEcCCCC
Q 019006 139 AEHN-------SFVNSCCPSRRG-----PPLVVSGSDDGTAKLWDMRQR--G---AIQTFP----DKYQITAVSFSDASD 197 (347)
Q Consensus 139 ~~~~-------~~v~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~~--~---~~~~~~----~~~~v~~~~~~~~~~ 197 (347)
.... ..+..+.+.... ...|+.-..+|.++-|-+..+ + ....+. ....|+++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 2211 122222222211 223455567777777664221 1 111221 245799999999989
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEE--EEEcCCCc------EEEEeCCCCCCcCceeEEEe
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYL--LTNGMDCK------LCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l--~t~~~d~~------i~~wd~~~~~~~~~~~~~~~ 269 (347)
.|++|+.... ..+. -.+...-+++-..-.+..+. ++...|+. ..+|.+-. .+.+.
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-------~~~fs 223 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-------FKFFS 223 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc-------eeeee
Confidence 8888775432 0000 00001111111111111111 11121211 12222211 01111
Q ss_pred ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
. .....+.+..+..||||.+||+...+|.|.+|++.+-++..+..
T Consensus 224 ~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 224 R-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred c-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 1 11124578999999999999999999999999998877766544
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=6.9e-07 Score=77.24 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-ceEEEeCCCCCceeecCCCCceEE
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-TAKLWDMRQRGAIQTFPDKYQITA 189 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~ 189 (347)
+|++++..|. |+..|.+...+..++ + .+...|.-....... +-++.|..|| .+-++|.+++......+.-..|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEeeCCccceEE
Confidence 6888888875 667777665554332 1 233334433333332 2467788888 899999988776666666778999
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC----cEEEEeCCCCCCcCcee
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC----KLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~~~~~ 265 (347)
+..+++|++++++.....|-++|+.++.....-+...+.|+.+.|||+++++|=+--+| .|+++|+... +..
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----Kiy 482 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----KIY 482 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----eEE
Confidence 99999999999999999999999999987766666678899999999999998765544 7899998632 111
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEee
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
...... ..-.+-+|.|||++|.--|
T Consensus 483 ~vTT~t-----a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTTPT-----AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCc-----ccccCcccCCCCcEEEEEe
Confidence 111111 1223556888888876543
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=2.2e-06 Score=71.31 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=118.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCC----C
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDK----Y 185 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~----~ 185 (347)
++.++++++.++.+..||..+|+.+..+......... +... ...++.++.++.+..+|.++++.+... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVVD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEEE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eeec-ccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 5677888889999999999999988776653221111 1111 234566668889999999998877663 211 1
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCc----------e-eEEEECCCCCEEEEEcCCCc-EEEE
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM----------I-TGMSLSPDGSYLLTNGMDCK-LCIW 253 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~v~~~~~~~~l~t~~~d~~-i~~w 253 (347)
..........+..++++..++.|..+|+++|+.+......... + ..+.+. ++ .++.++.++. +.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~- 188 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV- 188 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-
Confidence 1122222223778888888999999999999988777653322 1 222332 34 7777777775 555
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
|+...+ ..-... .. .... ....++..|+.++.++.|+.||+.+++.+.+
T Consensus 189 d~~tg~----~~w~~~--~~----~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 189 DLATGE----KLWSKP--IS----GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTTE----EEEEEC--SS-----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ECCCCC----EEEEec--CC----CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 887532 111111 11 1111 1346788888888999999999999998764
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.7e-08 Score=84.21 Aligned_cols=255 Identities=16% Similarity=0.159 Sum_probs=168.2
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-CCee-eEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-DCKN-FMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 131 (347)
-|.+.|+.+.- ...+++.+++.||.++.|.... .... ...+..|-..|.+++.+-++..+.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 47777777653 3567899999999999997643 1111 2345678888899999999999999777 99999999987
Q ss_pred Cceeeeeec--cCcceeEeecCCCC---CCEEEEEcCCCceEEEeCCCCCc-eeec--CCCCceEEEEEcCCCCeEEEEe
Q 019006 132 GKQIKKMAE--HNSFVNSCCPSRRG---PPLVVSGSDDGTAKLWDMRQRGA-IQTF--PDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 132 ~~~~~~~~~--~~~~v~~~~~~~~~---~~~~~s~~~d~~i~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
.....-+.. -+..+. +....+ ..+.++.-.++.+.++|-....+ ...+ -+-.+|.++.+.+.+..+.+..
T Consensus 86 ~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 655432222 122221 111121 12344555789999999775442 2222 2446899999999999999999
Q ss_pred cCCcEEEEeCCC------CceEEEec---------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc-----
Q 019006 204 IDNDVKVWDLRK------GEVSMTLQ---------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR----- 263 (347)
Q Consensus 204 ~dg~i~iwd~~~------~~~~~~~~---------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~----- 263 (347)
..|.|.-|.... .+....++ -.+....++.|+|++..+.+-+.|..|++++++.......
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999998762 11111221 1234578899999999999999999999998864321100
Q ss_pred -----eeEEEeccc---------------cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 264 -----CVKILEGHQ---------------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 264 -----~~~~~~~~~---------------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
..+...+.. ..-......+.|...|++|+-|+-=| |+|.++.++.+...
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 000000000 00011234567899999999998775 88898888776543
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=9.7e-10 Score=100.99 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=154.4
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-ceEEE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-TAKLW 170 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-~i~iw 170 (347)
....+..|....++++|+.+.++|+.|+..|.|+++++.+|........|++.+.-+.++.++..++.+.+... -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 34556778889999999999999999999999999999999998888999999998888888776666665554 57789
Q ss_pred eCCC-CCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC----CCCceeEEEECCCCCEEEEEc
Q 019006 171 DMRQ-RGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG----HQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 171 d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~v~~~~~~~~l~t~~ 245 (347)
++.. ++..+++. .-.++.|+.....-+.|+......+||+.++....++.. .+-.-+...|+|....++-
T Consensus 1173 ~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred ccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 9864 33333333 345678887766667777777899999999876555321 1112266789998877664
Q ss_pred CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEE
Q 019006 246 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 325 (347)
|| .+||+|..+ .+..+.. +. .-..-.|+|.|..++.-+. |||+++.+++...+.- .-..|.
T Consensus 1248 -dG--vLWDvR~~~----aIh~FD~----ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L--dqc~Vt 1308 (1516)
T KOG1832|consen 1248 -DG--VLWDVRIPE----AIHRFDQ----FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL--DQCAVT 1308 (1516)
T ss_pred -Cc--eeeeeccHH----HHhhhhh----he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCccc--cceEEE
Confidence 44 389998431 1111111 11 1223458999998887764 8999998877655432 235667
Q ss_pred EcCCCCEEE
Q 019006 326 FHATEPVIG 334 (347)
Q Consensus 326 ~~~~~~~l~ 334 (347)
|+..|..|.
T Consensus 1309 FNstG~VmY 1317 (1516)
T KOG1832|consen 1309 FNSTGDVMY 1317 (1516)
T ss_pred eccCccchh
Confidence 888776553
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=5.2e-07 Score=75.09 Aligned_cols=217 Identities=19% Similarity=0.177 Sum_probs=129.8
Q ss_pred CCeEEEEECCCCceeeeeeccCcceeEe-ecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeE
Q 019006 121 DKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 199 (347)
+|+|..||..+++.+.........-... ..... ...+++++.++.+..||..+++.+..+.....+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6889999999999887775421111111 11112 2456677899999999999888776554332211111 2235677
Q ss_pred EEEecCCcEEEEeCCCCceEEEe-cCCC---CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTL-QGHQ---DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
++++.++.++.+|..+|+...+. .... ..........++..++.+..++.|..+|.++. +.+..........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG----~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG----KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT----EEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC----cEEEEeecCCCCC
Confidence 77888889999999999988773 3221 11122223334788888888999999998753 3333333221111
Q ss_pred cc------ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 276 EK------NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 276 ~~------~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.. ....-....++ .+..++.++.+.-+|..+++.+.+.+ ...+..+ ....+..|..++.|+.|+.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 11 11122222344 77777777754444999999776544 2223332 4466667777779999999874
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=3.4e-08 Score=83.21 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=96.3
Q ss_pred CCCEEEEEcCCCceEEEeCCCCCc----eeecCCCCceEEEEEcCCCCeEEEEecCCc---EEEEeCCCCceEEEecCCC
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQRGA----IQTFPDKYQITAVSFSDASDKIYTGGIDND---VKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~ 226 (347)
...+++.+..+....+++.+.... ..........+++.+..+......+..-|. +.+|....+ ....+-+|-
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhv 151 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGHV 151 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-Ccchhhhhh
Confidence 345677777777766776654332 222222233344555445555555444444 444444433 334556899
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.++.++|+||+++++++..|..|++-.... ...+..+ ...+..-|..++.-+ +..|++||.|++|++||+.
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa----~f~Iesf---clGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA----TFVIESF---CLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc----ccchhhh---ccccHhheeeeeecc-CceeeecCCCCcEEEEecc
Confidence 9999999999999999999999999876431 1111111 112234566666655 4569999999999999999
Q ss_pred CceeeEEe
Q 019006 307 SRRILYKL 314 (347)
Q Consensus 307 ~~~~~~~~ 314 (347)
+++.+..+
T Consensus 224 sgk~L~t~ 231 (390)
T KOG3914|consen 224 SGKLLDTC 231 (390)
T ss_pred cCCccccc
Confidence 99887544
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=3.9e-09 Score=60.67 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.8
Q ss_pred ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 308 RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++++..+.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=4.6e-08 Score=77.95 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=110.7
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEecc-----------CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVH-----------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
++.+.|.. ...|+++..++.+...... .....+..+..|..+-..-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55666543 4456677666665554432 11122333333433322222333467899999999999998
Q ss_pred CCCCceee-eeec-cCcceeEeecCCCCCCEEEEEcCCC------ceEEEeCCCCCceee-cCCCCceEEEEEcCCCC-e
Q 019006 129 VETGKQIK-KMAE-HNSFVNSCCPSRRGPPLVVSGSDDG------TAKLWDMRQRGAIQT-FPDKYQITAVSFSDASD-K 198 (347)
Q Consensus 129 ~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~------~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~ 198 (347)
.+....+. ++.. +.+.. +.+.... .+++.+ ..-| ..+.|+++..+.... ......|.+++-+|..+ .
T Consensus 118 ~~~~~~~~~~i~~~~~~~a-s~~~~~~-~~~i~s-~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSA-SRKICRH-GNSILS-GGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHL 194 (319)
T ss_pred chHHHhhhhhccccccccc-ccceeec-ccEEec-CCcceEeeccceeeecccccccccccccccccchhhhCCcccccE
Confidence 76521111 1100 11100 0111111 122322 2223 334455443322111 11223488899998766 4
Q ss_pred EEEEecCCcEEEEeCCCCceE-EEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCC
Q 019006 199 IYTGGIDNDVKVWDLRKGEVS-MTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~ 256 (347)
+++|+.||.+-+||.|..... ..+..|+..|+.+-|+|. +..|+++++||.+..||-.
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 567889999999999977433 346789999999999994 6789999999999999964
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=83.87 Aligned_cols=148 Identities=22% Similarity=0.382 Sum_probs=107.8
Q ss_pred EEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-----Cce
Q 019006 106 LHWTTD--GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-----GAI 178 (347)
Q Consensus 106 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-----~~~ 178 (347)
++|+-+ +-. ++.+.+-.+-+-|++++-. ..|. ..+.|.+..+... .++++.|..+|.|..+|++.+ .+.
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcce
Confidence 456542 223 5667777788888887643 2222 3334444444433 368899999999999999865 345
Q ss_pred eecCCCCceEEEEEcC-CCCeEEEEecCCcEEEEeCCCCce---EEEecCCCCcee--EEEECCCCCEEEEEcCCCcEEE
Q 019006 179 QTFPDKYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQDMIT--GMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~--~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
+.+-|...++++..-. ++++|++.+.+|+|++||+|.-++ ++++.+|-..-. -+-+.+.+..++++|.|.-.+|
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 6677888888887765 678999999999999999998777 888899854322 2345677789999999999999
Q ss_pred EeCCC
Q 019006 253 WDMRP 257 (347)
Q Consensus 253 wd~~~ 257 (347)
|.++.
T Consensus 373 Wsl~~ 377 (425)
T KOG2695|consen 373 WSLDS 377 (425)
T ss_pred Eeccc
Confidence 99884
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=3.9e-06 Score=75.37 Aligned_cols=258 Identities=13% Similarity=0.123 Sum_probs=149.5
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeE-EEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCccee-
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD-LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN- 146 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 146 (347)
+..++.++.++.++.+|.... +.....+.. ..+.+ -.. .+..++.+..++.+..+|.++|+.+.+.........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG-EVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC-CCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 345667778888888887432 222211111 11111 011 245677788899999999999998876653211100
Q ss_pred --EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-----c---eEEEEEcC--CCCeEEEEecCCcEEEEeCC
Q 019006 147 --SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-----Q---ITAVSFSD--ASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 147 --~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 214 (347)
...+.-.+ ..++.++.++.+..+|..+++.....+... . ...+..+| .+..++.++.+|.++.+|..
T Consensus 196 ~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 196 RGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred cCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 00010011 246667888999999988877654432110 0 01111122 25677888889999999999
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 294 (347)
+++...+... .....+.. .+..++.++.++.+..+|..+.+...+ ...... ....+... .+.+|+.+
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~----~~~~~~---~~~~sp~v--~~g~l~v~ 341 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS----QSDLLH---RLLTAPVL--YNGYLVVG 341 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc----ccccCC---CcccCCEE--ECCEEEEE
Confidence 9987655432 11112222 456777888899999999865432111 100000 00111111 25678899
Q ss_pred eCCCeEEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEEEecCCCcEEeec
Q 019006 295 SSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 295 s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.||.|+++|..+++.+.+.+-....+. ...+ .+..|..++.||.++.++
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 9999999999999999887754333332 2222 244677789999998875
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.8e-07 Score=81.30 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=169.2
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC-----------CCCEEEEEcCCCceEEEe
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR-----------GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~s~~~d~~i~iwd 171 (347)
-.++.|+|.| .|+-|+ ...|.+-|..+.+.++.+..|...|..+.+.+. ...+++++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4677899877 455554 457888899888889999999988888776542 224678888899999999
Q ss_pred CCCCCceeecCCC-CceEEEEEcC---CC-CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC-CCCEEEEEc
Q 019006 172 MRQRGAIQTFPDK-YQITAVSFSD---AS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP-DGSYLLTNG 245 (347)
Q Consensus 172 ~~~~~~~~~~~~~-~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~ 245 (347)
...+..+..+.+. ..+..++|-+ +. ..+++-....++.+|+..+|+.......-.....++.+.| +.+.+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 9888776666543 4566666643 34 4666777778999999999998877665556677789888 556666667
Q ss_pred CCCcEEEEeCCCCCCcC---ceeEEEecccc-----------c----------cccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 246 MDCKLCIWDMRPYAPQN---RCVKILEGHQH-----------N----------FEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~---~~~~~~~~~~~-----------~----------~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
..|.+.+-+.-..++.. +.++.-..|.. + +.-.+...+|+|.-+-++-...-..++
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 77777777654322221 22222222211 0 001123457899887777777788999
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcCCC--CEEEEecCCCcEEee
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHATE--PVIGSCSSDKQIYLG 345 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~i~ 345 (347)
++|++-..++...+-..+.+.-+.+-|+. ..|.+.=.||.+.+|
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 99999999988877666666666666664 588888899998887
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.7e-08 Score=88.53 Aligned_cols=210 Identities=18% Similarity=0.274 Sum_probs=141.7
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC-------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG-------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~ 166 (347)
..+.||...|..++--.+.+-+++++.|++|++|.+... .+..++..|...+.++.+..+.. .+ ++.|+-
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~ScD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASCDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eeccCc
Confidence 356789999988877667788999999999999998642 13345567888888776654432 23 467899
Q ss_pred eEEEeCCCCCceeec---CCCCceEEEEEcC--CCCeEEEE-ecCCcEEEEeCCCCceEEEec-----CCCCceeEEEEC
Q 019006 167 AKLWDMRQRGAIQTF---PDKYQITAVSFSD--ASDKIYTG-GIDNDVKVWDLRKGEVSMTLQ-----GHQDMITGMSLS 235 (347)
Q Consensus 167 i~iwd~~~~~~~~~~---~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~ 235 (347)
|.+||.--+..+... +.+..+..+..-+ +...+.+| +...+|+++|.|.++-..+++ +.+..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999997555444322 2223333332222 23344444 788899999999876544432 344568899999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEE-EeCCCceeeEEe
Q 019006 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI-WDTTSRRILYKL 314 (347)
Q Consensus 236 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~v-wd~~~~~~~~~~ 314 (347)
+.|++++.+-.+|.|.+.|.|+. ..+...+.. +.....++ .|..+.|+....|..+.+ |...++...++.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G----~vINswrpm----ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNG----KVINSWRPM----ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCC----ceeccCCcc----cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999999999999998854 223322222 11222222 467788888888889988 988777666555
Q ss_pred c
Q 019006 315 P 315 (347)
Q Consensus 315 ~ 315 (347)
+
T Consensus 957 k 957 (1034)
T KOG4190|consen 957 K 957 (1034)
T ss_pred C
Confidence 4
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=5.7e-08 Score=81.95 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=101.3
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeeeccCcceeEeecCCCCCC--EEEEEcCCCceEEEeCCCCCc
Q 019006 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQ----IKKMAEHNSFVNSCCPSRRGPP--LVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~--~~~s~~~d~~i~iwd~~~~~~ 177 (347)
..+..++++++|+.+..++...++++..... +..... ...-..+.+...... ++-..+....+.+|....+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3344677788888887777776776654332 111110 011111111111111 222334455566666555555
Q ss_pred eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 178 IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
...+.|-..++.++++||+++++++..|..|++-.......+..+ .||+..|..++.-+ +..|+++|.|+++++||++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecc
Confidence 555666678999999999999999999999999877655444443 57999999999875 4568999999999999998
Q ss_pred CCCC
Q 019006 257 PYAP 260 (347)
Q Consensus 257 ~~~~ 260 (347)
..+.
T Consensus 224 sgk~ 227 (390)
T KOG3914|consen 224 SGKL 227 (390)
T ss_pred cCCc
Confidence 6543
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=1.1e-07 Score=75.79 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=90.9
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCCEEEEec-----CCCeEEEEECCCCceeeeeeccC
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGSQIISAS-----PDKTLRAWDVETGKQIKKMAEHN 142 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~ 142 (347)
++.++++..||.+.+++............ .|.+ -.+.+.-..++.|.+++ .-+..++|+++..+.+..-....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 56789999999999988643111100111 1111 11122222344444432 12345566654433222112222
Q ss_pred cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec--CCCCceEEEEEcCC-CCeEEEEecCCcEEEEeCCC
Q 019006 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDA-SDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 143 ~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 215 (347)
..+...+.+|....+++.|+.||.+-+||.++......+ .++..+..+-|+|. +..|+++++||.+--||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 347777888888889999999999999999877433222 35678999999986 56899999999999999654
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=6.3e-09 Score=59.78 Aligned_cols=37 Identities=32% Similarity=0.686 Sum_probs=35.0
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEe
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~ 85 (347)
++..+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678999999999999999999999999999999997
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=1.4e-05 Score=66.79 Aligned_cols=216 Identities=15% Similarity=0.202 Sum_probs=131.5
Q ss_pred EEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEc-CCCCEEEEecCCCeEEEEECCCCceeeeee
Q 019006 62 TMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 62 ~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
++.|.+ ++.++++--..+.|+.|+..+..... +... ....+++. +++ .|+.+..++ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~--~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLP--GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESS--SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecC--CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 567887 67777887788999999986543322 2222 26677777 564 555555555 4555988875433222
Q ss_pred c-----cCcceeEeecCCCCCCEEEEEcCC--------CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE-EEecC
Q 019006 140 E-----HNSFVNSCCPSRRGPPLVVSGSDD--------GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY-TGGID 205 (347)
Q Consensus 140 ~-----~~~~v~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d 205 (347)
. .....++++..+++. +.++.... |.+..++.. ++.......-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 2 234456677777654 55554433 446666665 33322233334578999999999776 55677
Q ss_pred CcEEEEeCCCCce-------EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 206 NDVKVWDLRKGEV-------SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 206 g~i~iwd~~~~~~-------~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+.|..|++..... ...+.......-.+++..+|+..++....+.|.++|.. +..+..+... ...
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-----G~~~~~i~~p----~~~ 226 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-----GKLLREIELP----VPR 226 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-----SCEEEEEE-S----SSS
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-----ccEEEEEcCC----CCC
Confidence 8899998853221 12223222347789999999988887778899999864 3344444322 135
Q ss_pred eEEEEE-CCCCCEEEEe
Q 019006 279 LLKCGW-SPDGSKVTAG 294 (347)
Q Consensus 279 ~~~~~~-s~~g~~l~sg 294 (347)
+.+++| .++...|+..
T Consensus 227 ~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEESTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 788888 4676665543
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=3e-06 Score=76.17 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=114.4
Q ss_pred cEEEEEECCCCCe-EEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEE-ecCC--CeEEEEECCC
Q 019006 59 AVYTMKFNPAGTV-IASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIIS-ASPD--KTLRAWDVET 131 (347)
Q Consensus 59 ~V~~v~~~~~~~~-l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d--g~i~iwd~~~ 131 (347)
......|+|+|+. ++..+.+ ..|+++|+.+... ..+....+......|+|||+.|+. .+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5678899999984 6654443 4588888754322 223234445566789999987764 4334 4677778877
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC----
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID---- 205 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 205 (347)
++. ..+..+........+++++..++++....+ .|.+.|+.++...+...... ....|+|+++.++.....
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcc
Confidence 653 334333332233457787776766665555 46666777655433222111 124899999988765433
Q ss_pred -----CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-C--cEEEEeC
Q 019006 206 -----NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-C--KLCIWDM 255 (347)
Q Consensus 206 -----g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-~--~i~~wd~ 255 (347)
..|.+.|+.++... .+... .......|+|||+.++-...+ + .+.+.++
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 36888898877643 33222 223458899999977655433 2 2444454
No 305
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=5.9e-06 Score=71.67 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=107.2
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCC-cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDR-DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~-~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
.+|.+.|.-..+..++.-++.|..|| .+-+++..+ .+...+.+.-+.|.++..+++|++++.+.....+-+.|++++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 47888899999998888999999999 789999854 333455566678999999999999999988889999999998
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEc----CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS----DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.....-+...+.+..+.++++.. .++-+- ....|+++|+..++....-.....-.+-+|+|++++|+--
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 75433334456677777777654 444333 3457899999887765443332333456788888877643
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=5.1e-09 Score=96.40 Aligned_cols=259 Identities=19% Similarity=0.273 Sum_probs=168.9
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC--eEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK--TLRA 126 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~i 126 (347)
+...+..|....+|++|+...++|+.|+-.|.|+++++... .......+|..+|+.+.-+.+|..+++.+.-. ...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44567889999999999999999999999999999999643 33446789999999999999999887765433 4778
Q ss_pred EECCC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-----CCceEEEEEcCCCCeEE
Q 019006 127 WDVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-----KYQITAVSFSDASDKIY 200 (347)
Q Consensus 127 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~ 200 (347)
|++.+ +.....+.... .+.|+.... .-+.|..-....+||+.+..++.++-. ...-++..|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~ed~----~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDK----AVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hccccccCccccccccc----eeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 98754 33333333221 123332222 223455556789999999887776421 23457888999988777
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
+|| .+||.|..+.++.+...+..+. =.|+|+|+.++..+. |||+|++.... ..+ .-.-.
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh----~VP------~Ldqc 1305 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLH----SVP------SLDQC 1305 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHh----cCc------cccce
Confidence 455 4799998776666544333322 358999999988765 89998653211 111 01123
Q ss_pred EEEECCCCCEEEEee-----C------------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 281 KCGWSPDGSKVTAGS-----S------------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs-----~------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
.+.|+..|..+...- . -...+-||......+.++++ ...|.+++-.|...+|+-
T Consensus 1306 ~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred EEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence 445666666544332 0 01244555555566666654 346777777777776653
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=1.9e-05 Score=66.26 Aligned_cols=231 Identities=15% Similarity=0.177 Sum_probs=142.0
Q ss_pred eeEEEEcC-CCCEEEEecCCCe-EEEEECCCCceeeeeeccCcce--eEeecCCCCCCEEEE----EcCCCceEEEeCC-
Q 019006 103 ILDLHWTT-DGSQIISASPDKT-LRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLVVS----GSDDGTAKLWDMR- 173 (347)
Q Consensus 103 v~~~~~~~-~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~s----~~~d~~i~iwd~~- 173 (347)
...++.+| ....++.+-.-|+ ..+||..+++....+....... --.++++++..++++ .+..|.|-+||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34567788 4445556666554 7789999888766554332221 123566666544443 2345889999998
Q ss_pred CCCceeecCCC-CceEEEEEcCCCCeEEEEe------------------cCCcEEEEeCCCCceEEE--e--cCCCCcee
Q 019006 174 QRGAIQTFPDK-YQITAVSFSDASDKIYTGG------------------IDNDVKVWDLRKGEVSMT--L--QGHQDMIT 230 (347)
Q Consensus 174 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~i~ 230 (347)
+-..+..++.. ...-.+.+.|+++.|+++. .+..+...|.++|+.+.+ + ..|+..|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 44445555432 2345567888987777652 122344566777776554 4 33677899
Q ss_pred EEEECCCCCEEEEEcCCCc-------EEEEeCCCCCCcCceeEEEec---cccccccceEEEEECCCCCEEEEee-CCCe
Q 019006 231 GMSLSPDGSYLLTNGMDCK-------LCIWDMRPYAPQNRCVKILEG---HQHNFEKNLLKCGWSPDGSKVTAGS-SDRM 299 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~-------i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~ 299 (347)
-+++.++|..++..-..|. +-+++... ....+.. ....+...+-+++++++|.++++.| ..|.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 9999999876666543332 33333221 1111111 1123456788999999999886655 6778
Q ss_pred EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 300 VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
+.+||..+++++....- ..+..++-.+++ +++|.+.-..+
T Consensus 241 ~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~~ 280 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQLI 280 (305)
T ss_pred EEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccEE
Confidence 99999999998865432 346777777777 67766654433
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.81 E-value=5.1e-06 Score=79.73 Aligned_cols=274 Identities=14% Similarity=0.187 Sum_probs=151.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
.+.|.++.|..++.-++.+..+|.|.+-|.... .......-...|.+++|+||.+.++.....+++.+.+- +...+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence 468999999999999999999999999876432 22223334568999999999999998888888776542 111111
Q ss_pred eeecc-----CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEe----cC-
Q 019006 137 KMAEH-----NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGG----ID- 205 (347)
Q Consensus 137 ~~~~~-----~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d- 205 (347)
.-..+ .+....+-+..... -+-|+ .|+....+.... +..........-+.+.|--+|+++++.. .+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeT--qfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKET--QFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceecccccce--eeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 11000 00011111111110 11111 111111111000 0000001123346789999999998732 23
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
..|++||.. +.....-......-.+++|-|.|..+++.. .|+.|.+|...... .+...-..+ .-...+..+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p----~de~~ve~L 295 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFP----LDEKEVEEL 295 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCc----ccccchhee
Confidence 789999966 433222222223346789999999998864 45678888753211 111110011 112238899
Q ss_pred EECCCCCEEEE---eeCCCeEEEEeCCCce--eeEEecCCccCeeeEEEcCCCC--EEEEecCCCcEEee
Q 019006 283 GWSPDGSKVTA---GSSDRMVYIWDTTSRR--ILYKLPGHTGSVNESVFHATEP--VIGSCSSDKQIYLG 345 (347)
Q Consensus 283 ~~s~~g~~l~s---gs~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~i~ 345 (347)
+|+.++..||. ......|++|-..+.. +.+.+.-..... +.|+|... +++.+ .+|.+.+.
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~-~sG~~~v~ 362 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLR-ESGQRLVR 362 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEe-cCCcEEEE
Confidence 99999999988 4455569999887643 122222222222 78888754 23232 45554443
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=1e-05 Score=65.89 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=106.1
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-------cccceeEEEEcCC------CCEEEEecCCCeE
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-------HKNAILDLHWTTD------GSQIISASPDKTL 124 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-------h~~~v~~~~~~~~------~~~l~s~~~dg~i 124 (347)
..=+-++|+||+.+||.+...|+|+++|+.+. .. ..+.. -..+|..|.|.+. ...|+.-..+|.+
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccc-ee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34568899999999999999999999999753 22 22221 1246777777542 2246666788888
Q ss_pred EEEECCCC-----ceeeeee--c-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCC
Q 019006 125 RAWDVETG-----KQIKKMA--E-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS 196 (347)
Q Consensus 125 ~iwd~~~~-----~~~~~~~--~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (347)
+-|-+..+ +....+. . ....+.++.+.+...-++++|.....-..+. .....+++-.+-.+.
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDS 191 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCC
Confidence 77765322 2222322 2 2445777777776654444444433211110 001122222222121
Q ss_pred CeE--EEEecCCc------EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 197 DKI--YTGGIDND------VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 197 ~~l--~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
.+. +....|+. -.+|.+-+.+.........+.|..|..+|||..|++...+|.|.+|++-...
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 111 12222221 1222222111111112235679999999999999999999999999986543
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=4.6e-07 Score=84.11 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=127.9
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSL 234 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 234 (347)
..++-|+-...+..+|+++.+..+...-. ..+.-+.. .++.+++|...|+|.+-|.++.+.++++..|++.|.++..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 44566666777888999887766655433 24555544 4689999999999999999999999999999999876554
Q ss_pred CCCCCEEEEEcC---------CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEe
Q 019006 235 SPDGSYLLTNGM---------DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 235 ~~~~~~l~t~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd 304 (347)
.|+.|+++|. |..|++||+|..+. +..+.-+ ....-+.|+|. ...+++.|..|+..+-|
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~-----~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFP-----YGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccc-----cCchhhhhcccccceEEEEecccceeecc
Confidence 6899999984 66789999985432 1111111 11122346775 35788889999999998
Q ss_pred C---CCc-eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 305 T---TSR-RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 305 ~---~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
. ... .-++.+......+..+.+++.+..||.+..+|.|.+|-
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3 222 12223333344589999999999999999999999983
No 311
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=1.3e-08 Score=90.72 Aligned_cols=268 Identities=16% Similarity=0.249 Sum_probs=153.5
Q ss_pred ccEEEEEECCC--CCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCC-CCEEEEec----CCCeEEEEEC
Q 019006 58 SAVYTMKFNPA--GTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTD-GSQIISAS----PDKTLRAWDV 129 (347)
Q Consensus 58 ~~V~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~----~dg~i~iwd~ 129 (347)
..+.|++++.+ ..+++.|..+|.|.+-....+- .......+|....++++|++- .+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 45677776553 4689999999999987763221 113345678889999999984 45555552 3567999999
Q ss_pred CCCc----eeeeeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeecCCCCceEEEEEcC-CCCeEEEE
Q 019006 130 ETGK----QIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTFPDKYQITAVSFSD-ASDKIYTG 202 (347)
Q Consensus 130 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~ 202 (347)
.++- ....+.. ......++|+. .+.+++.+|.....+.++|++.... ...+. ...+..+.++| ..++++ .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~c-s 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFC-S 213 (783)
T ss_pred ccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCcee-c
Confidence 8751 1112222 22233356665 4557888999999999999984322 12221 12345566777 445554 4
Q ss_pred ecCCcEEEEe-CCCCceEE-EecCCC----CceeEEEECCCCC-EEEEEcCC-CcEEEEeCCCCCCcC----ceeEEEec
Q 019006 203 GIDNDVKVWD-LRKGEVSM-TLQGHQ----DMITGMSLSPDGS-YLLTNGMD-CKLCIWDMRPYAPQN----RCVKILEG 270 (347)
Q Consensus 203 ~~dg~i~iwd-~~~~~~~~-~~~~~~----~~i~~v~~~~~~~-~l~t~~~d-~~i~~wd~~~~~~~~----~~~~~~~~ 270 (347)
..||.|.+|| .++-+... .+...+ +.+..++|+|..+ .+++...| ++|+++|+....... ........
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 5599999999 44433222 222112 2488999999643 45555555 689999986422111 11111111
Q ss_pred ---ccc-ccccceEEEEECCCC--CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 271 ---HQH-NFEKNLLKCGWSPDG--SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 271 ---~~~-~~~~~~~~~~~s~~g--~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
.++ ..-..|....||+.. ....++-..-.+.-|++.. ..++.|..+.+++.|+-..++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~~r~l 357 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSFKRKL 357 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhhcccc
Confidence 011 111345566666644 2344444444444444432 134566667777777655443
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.4e-07 Score=78.52 Aligned_cols=213 Identities=18% Similarity=0.191 Sum_probs=136.6
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCC--C-ceeeeeeccCcceeEeecCCCCCCEEEEEcC-CCceEEEeCCC
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVET--G-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQ 174 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~ 174 (347)
|.+.|+.+.-. -.+++++++.||.++.|--.. + +-+..+..|...+..++.+-+ ..++.+... |..++++|+..
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEeec
Confidence 66677766544 356899999999999996432 1 223334445555555554443 357778666 99999999876
Q ss_pred CCceeecCCCCceEEEEEc-CCCC---eEEEE-ecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 175 RGAIQTFPDKYQITAVSFS-DASD---KIYTG-GIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~-~~~~---~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
-..+.-+....-...+.|. ..+. .++++ -.++.+.++|-+... ....-.-|..+|..+.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 5444322221111112222 1121 34433 367899999976543 233345688999999999999999999999
Q ss_pred CcEEEEeCCC-CC-CcCceeEEEecccc------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 248 CKLCIWDMRP-YA-PQNRCVKILEGHQH------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 248 ~~i~~wd~~~-~~-~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
|.|..|.... ++ +..+....++ |.. .......++.|+|+|..+.+-+.|..|++++..++++++.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K-~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELK-HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ceeEeecCCCcccCcccccccccc-ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999998762 11 1111111111 111 11335678889999999999999999999999988876544
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.65 E-value=3.6e-05 Score=69.16 Aligned_cols=258 Identities=12% Similarity=0.079 Sum_probs=145.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-c---------cee-EEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-N---------AIL-DLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~---------~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..+++++.++.++-+|..... ......-.. . .+. .+.. ++..++.++.+|.+..+|.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGK-EIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 5567777777887777764322 221111100 0 000 0111 356778888999999999999988776
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEE--EEcC--CCCeEEEEecCCcEEEEeC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV--SFSD--ASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~--~~~~l~~~~~dg~i~iwd~ 213 (347)
....... .+ .+.-. ...++.++.++.+..+|.++++.+..++.......+ .-+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~~~~-~s-sP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAGEA-LS-RPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCCce-ec-CCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 6543221 11 00011 235667888899999999999877665432111000 0011 1346777888999999999
Q ss_pred CCCceEEEecCCCC-------ceeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 214 RKGEVSMTLQGHQD-------MITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 214 ~~~~~~~~~~~~~~-------~i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
.+++...+...... ....+.-+| .+..++.++.++.+..+|..+.+.. -... . .. ...+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~----W~~~-~-~~----~~~~-- 290 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV----WKRE-Y-GS----VNDF-- 290 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE----Eeec-C-CC----ccCc--
Confidence 98876554321100 011111122 3556777778899999998754321 1111 0 00 0011
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-CeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-SVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..++..|+.++.+|.++.+|..+++.+.+...-.. .....+. .+..+..++.||.++..|
T Consensus 291 ~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 291 AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 12467888888999999999999988765432111 1111112 134555667777776544
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.3e-06 Score=70.95 Aligned_cols=235 Identities=14% Similarity=0.180 Sum_probs=134.0
Q ss_pred EEeCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 95 VLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
.+.+|...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++|++..+....+.+|...|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5667888999999999776 6888999999999999998777777666 7789999998888999999999999999998
Q ss_pred CCC-ceeecCC---CCceEEEE------EcCCCCeEEEEecCCcEEEEeCCCCc----eEEEecCCCCceeEEEECCCCC
Q 019006 174 QRG-AIQTFPD---KYQITAVS------FSDASDKIYTGGIDNDVKVWDLRKGE----VSMTLQGHQDMITGMSLSPDGS 239 (347)
Q Consensus 174 ~~~-~~~~~~~---~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~~~~ 239 (347)
... .+..+.. ..+|..++ ..+.+..++....+ +..|++.... ++.++. ..+...++..++..+
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSN 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeecCccc
Confidence 543 2222221 11222222 22233333333332 4455543211 111111 123344455555434
Q ss_pred EEEEEcCC-----------------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEE
Q 019006 240 YLLTNGMD-----------------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVY 301 (347)
Q Consensus 240 ~l~t~~~d-----------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~ 301 (347)
.++..-.. ...-+|..+.........+. +. ...+.. .++..+|+ .|.+.+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl---~t---~~ai~~---~~~nn~iv~~gd~tn~li 414 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL---ST---TQAIRA---VEDNNYIVVVGDSTNELI 414 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc---cc---ccceec---cccccEEEEecCCcceeE
Confidence 33332211 01112222110000000000 00 001111 34555555 466778999
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcCCC--CEEEEecCCCcEEe
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHATE--PVIGSCSSDKQIYL 344 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~i 344 (347)
+||+.+.+++++++-. .+|.++.....+ .+|+.-..| .++|
T Consensus 415 l~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~-~v~I 457 (463)
T KOG1645|consen 415 LQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDD-RVHI 457 (463)
T ss_pred EeccchhheeeecccC-cceeecceeecCCcchhhheecc-eEEE
Confidence 9999999999988654 678888766553 355444433 4444
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.4e-05 Score=74.18 Aligned_cols=206 Identities=14% Similarity=0.265 Sum_probs=128.0
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-----ceEEEeCCCCC-----
Q 019006 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-----TAKLWDMRQRG----- 176 (347)
Q Consensus 107 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~----- 176 (347)
+|++++..++.|+.+|.|.+.+- ..+.+..+..+...+........+..++++-+.|+ .+++||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 37888899999999999888762 23333555555544333333444445666665554 48999986431
Q ss_pred -ce---eecC-----CCCceEEEEEcCCCCeEEEEecCCcEEEEe--CC-C-C-ceEEEecCCCCceeEEEECCCCCEEE
Q 019006 177 -AI---QTFP-----DKYQITAVSFSDASDKIYTGGIDNDVKVWD--LR-K-G-EVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 177 -~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd--~~-~-~-~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
++ ..++ ....+.+++.+.+-..+++|-.+|.|..+. +. . + +...... -..+|+++++..++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR-GKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-CCCCceeeEEecCCceeE
Confidence 22 1222 235688899999989999999999999884 21 1 1 1111222 256899999998887622
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec-CCccCe
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP-GHTGSV 321 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~v 321 (347)
-...-..|.+|.+.... ...+.+..+. ..+.+..+++....+++++.. .+++|+.....+-..+. ||....
T Consensus 188 Fv~Tt~~V~~y~l~gr~---p~~~~ld~~G----~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT---PSLKVLDNNG----ISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEecceeEEEEecCCC---cceeeeccCC----ccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence 22233478999887322 1122233332 345666677765545555544 69999988766666666 776544
Q ss_pred e
Q 019006 322 N 322 (347)
Q Consensus 322 ~ 322 (347)
.
T Consensus 260 ~ 260 (933)
T KOG2114|consen 260 L 260 (933)
T ss_pred E
Confidence 3
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=5.2e-06 Score=76.39 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=116.2
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEEC
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS 235 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 235 (347)
..++.|+.+|.+.+.+..... ...+.+... +-.|.++++++.||+|.|..+-+.+...++.- ..++.+++++
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~ 121 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALH 121 (846)
T ss_pred ceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEec
Confidence 578899999999999875432 222222111 55799999999999999998888776665543 3579999999
Q ss_pred CC-----CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 236 PD-----GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 236 ~~-----~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
|+ .+.+++||.-| +.++.-+=....... . .+...+.|.++.|. |.++|-++.+| |+|||...++.
T Consensus 122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~--l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----V--LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred cchhhhhhhheeecCcce-EEEehhhhhcCccce----e--eecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 97 46889999888 878764322111111 1 12335789999886 78999999887 99999999988
Q ss_pred eEEecCCcc------CeeeEEEcCCCCEEEEecC
Q 019006 311 LYKLPGHTG------SVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 311 ~~~~~~h~~------~v~~~~~~~~~~~l~s~s~ 338 (347)
+..++-... .-..+.|.++..+++--+.
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d 225 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD 225 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCCeEEEecCC
Confidence 876653322 3467788888776654443
No 317
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=8.6e-06 Score=71.93 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=137.6
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC-----------CCceEEEeC
Q 019006 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-----------DGTAKLWDM 172 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----------d~~i~iwd~ 172 (347)
+-+.|||-|.||+|--.-| |.+|--.+...+..+. |. .|.-+.++|.. .+|++-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEc
Confidence 5678999999999987666 7899776666666654 32 34445666655 35555432 257899999
Q ss_pred CCCCceeecCC---C-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC--
Q 019006 173 RQRGAIQTFPD---K-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-- 246 (347)
Q Consensus 173 ~~~~~~~~~~~---~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-- 246 (347)
+++.....++. . ..-.-+.|+.+++++|.-.. ..|.||+..+-.+.-.-.-.-+.|....|+|.++.||=-..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99988777654 1 12345789999999886665 46888886542111100011234667778877766553110
Q ss_pred --------------CCcE---EEEeCCCCC------CcCceeEEEec-------------------c-----ccccccce
Q 019006 247 --------------DCKL---CIWDMRPYA------PQNRCVKILEG-------------------H-----QHNFEKNL 279 (347)
Q Consensus 247 --------------d~~i---~~wd~~~~~------~~~~~~~~~~~-------------------~-----~~~~~~~~ 279 (347)
...| .++++.+-+ ...-|++..+. . .......+
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 0111 111111000 00011111110 0 01123467
Q ss_pred EEEEECCCCCEEEEeeC---CCeEEEEeCCC----ceeeEEecCCccCeeeEEEcCCCCEEEEecC---CCcEEee
Q 019006 280 LKCGWSPDGSKVTAGSS---DRMVYIWDTTS----RRILYKLPGHTGSVNESVFHATEPVIGSCSS---DKQIYLG 345 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~---dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~i~ 345 (347)
...+|-|.|..+++-+. ..++.+|...+ .+++.+++. ...+.+-|+|.|++++-+.. .|.+...
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 78899999998876543 35788887763 234445543 45688999999998876653 4545443
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=7.3e-06 Score=76.45 Aligned_cols=182 Identities=11% Similarity=0.177 Sum_probs=124.6
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
+..++-|+-...+..+|+.+.+ ......-....|+-|.. +++.+.+|...|+|.+-|.++.+.+.++..|.+.+.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred Ccceeecchhhheeeeecccce-eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456666666666666765332 22222222233555544 47889999999999999999999999999999988765
Q ss_pred ecCCCCCCEEEEEcCC---------CceEEEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEEecCCcEEEEe---CCC
Q 019006 149 CPSRRGPPLVVSGSDD---------GTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTGGIDNDVKVWD---LRK 215 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd---~~~ 215 (347)
.. .++++++++.. .-+++||+|....+..++-.....-+.|+|.- ..+++.+..|...+-| +.+
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 43 24577777654 45789999876655554433333446677763 4677888999999888 333
Q ss_pred Cce-EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 216 GEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 216 ~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
... ...+......+..++++++++.++.+..+|.|.+|--+
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 211 22222334458999999999999999999999999743
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=6.4e-06 Score=76.29 Aligned_cols=267 Identities=14% Similarity=0.184 Sum_probs=145.0
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee--e
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK--K 137 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~ 137 (347)
+.++.|+|..-.||+|-.-|.+.+|+... .+.......|+.+|..+.||++|..++|+..-|.+.+|.......+. .
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 45689999999999999999999998743 23334456799999999999999999999999999999875322211 1
Q ss_pred eecc--CcceeEeec--CCCCC------CEEEEEcCCCceE-EEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 138 MAEH--NSFVNSCCP--SRRGP------PLVVSGSDDGTAK-LWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 138 ~~~~--~~~v~~~~~--~~~~~------~~~~s~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+..| +..+.-+|+ .++.. +..++| ++..+- .++-+....-....+ .-.|++..++.++.+|
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg-De~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~G 212 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG-DESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSG 212 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccC-chhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCc
Confidence 2122 122222332 11110 112222 222221 222221110011100 1235677888899999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC----------------C---------CCc
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP----------------Y---------APQ 261 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~----------------~---------~~~ 261 (347)
+|+-.|- .+++....+... ...|-|.+....++..-.+-+++++-+.. . +..
T Consensus 213 tVyyvdq-~g~~~~V~k~dS--~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss 289 (1416)
T KOG3617|consen 213 TVYYVDQ-NGRQRTVHKLDS--EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS 289 (1416)
T ss_pred eEEEEcC-CCcEEEEEEccc--hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc
Confidence 9988874 333322221110 01122322222222222222222221100 0 000
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------eeeEEecC---CccCeeeEEEcCCCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR-------RILYKLPG---HTGSVNESVFHATEP 331 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~---h~~~v~~~~~~~~~~ 331 (347)
+ .+..-+.........+.+++++..+..|..|...|.+.+|--... .-...+.+ -.+.|..+.|.|-.+
T Consensus 290 G-vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~ 368 (1416)
T KOG3617|consen 290 G-VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS 368 (1416)
T ss_pred c-cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc
Confidence 0 011111111122346889999999999999999999999943221 22334443 346799999999777
Q ss_pred EEEEecCC
Q 019006 332 VIGSCSSD 339 (347)
Q Consensus 332 ~l~s~s~D 339 (347)
.++--+..
T Consensus 369 ~~avn~~~ 376 (1416)
T KOG3617|consen 369 TAAVNTEE 376 (1416)
T ss_pred hhhhhhhh
Confidence 66544443
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.3e-05 Score=73.78 Aligned_cols=185 Identities=16% Similarity=0.155 Sum_probs=121.8
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
+.+.+++++ ++.++-|..+|.+++.+..... .....|... ...+.++++|+.||++.+..+-+......
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 455666665 6789999999999999865432 223333322 33457899999999999998877777776
Q ss_pred cCCCCceEEEEEcCC-----CCeEEEEecCCcEEEEeCC--CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 181 FPDKYQITAVSFSDA-----SDKIYTGGIDNDVKVWDLR--KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
+.-+..+.+++++|+ .+.+++|+..| +.++.-+ ..+....+..-.++|.+++|. |+++|-++.+| |++|
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 666778999999998 56899999988 7777532 122222455557899999995 77887777665 9999
Q ss_pred eCCCCCCcCceeEEEeccccc--cccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHN--FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
|+...+ .+..++..... .+.....+.|.++ ..|+-|-.| +|++...+
T Consensus 185 d~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred eccccc----eeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence 986422 11111111111 1112334567665 455566655 68888766
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=9e-05 Score=69.05 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=120.5
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccc-eeEEEEcCCCCEEEEecCCC-----eEEEEECCCCc----
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNA-ILDLHWTTDGSQIISASPDK-----TLRAWDVETGK---- 133 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~---- 133 (347)
.|++.+..+|.|+.+|.|.+.+- .......++.+... |..+.......+|++.+.|+ .++||+++..+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 35688999999999999988764 23333556667666 44443333446888888775 49999986432
Q ss_pred --ee--eeeecc-----CcceeEeecCCCCCCEEEEEcCCCceEEEe--C-CCCCcee--ecCCCCceEEEEEcCCCCe-
Q 019006 134 --QI--KKMAEH-----NSFVNSCCPSRRGPPLVVSGSDDGTAKLWD--M-RQRGAIQ--TFPDKYQITAVSFSDASDK- 198 (347)
Q Consensus 134 --~~--~~~~~~-----~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd--~-~~~~~~~--~~~~~~~v~~~~~~~~~~~- 198 (347)
.. ..+..+ ..++..++.+.+ -..++.|-.+|.|.++. + |.+.... ..+.+.+|+.+.+..++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 11 112121 122333333333 46788899999999884 2 2222222 2345678999999988876
Q ss_pred EEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 199 IYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
+++++ ...|.+|.+....+ ...+..|...++|-++++....+++++.. .+.+||...
T Consensus 187 lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 187 LFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred EEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 33333 34689998874332 33466677788999998866657766644 699998763
No 322
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.41 E-value=0.0001 Score=70.13 Aligned_cols=222 Identities=19% Similarity=0.315 Sum_probs=133.6
Q ss_pred CCEEEEe-cCCCeEEEEECCCCceeeeeeccCcc-eeEeecCCC----CCCEEEEEcCCCceEEEeCCCCC--cee----
Q 019006 112 GSQIISA-SPDKTLRAWDVETGKQIKKMAEHNSF-VNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRG--AIQ---- 179 (347)
Q Consensus 112 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~--~~~---- 179 (347)
.++|+.- .....++-.|++.|+.+..+..+... +..+++... .+.-.+.|-.+..+..||.|-.. .+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 34577999999999999988877654 555554321 12234568888999999998543 232
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC--
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR-- 256 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~-- 256 (347)
.+.......|++-+. .+++|+|+.+|.||+||- .+. ....+.+-..+|..|..+.||+++++.+.. -|.|++..
T Consensus 573 ~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t~~~ 649 (794)
T PF08553_consen 573 QYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDTLIK 649 (794)
T ss_pred ccccCCCceEEEecC-CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEEeee
Confidence 123344677777765 458999999999999994 443 333456667899999999999999887754 56666642
Q ss_pred C----------------CCCcCceeEEEecccccc------ccceEEEEECC----CCCEEEEeeCCCeEEEEeCCC---
Q 019006 257 P----------------YAPQNRCVKILEGHQHNF------EKNLLKCGWSP----DGSKVTAGSSDRMVYIWDTTS--- 307 (347)
Q Consensus 257 ~----------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~----~g~~l~sgs~dg~i~vwd~~~--- 307 (347)
. ..+..+.++.-+.|...+ ........|+. ....|++ +....+.+|+++.
T Consensus 650 ~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivt-stG~f~v~Wnf~kV~~ 728 (794)
T PF08553_consen 650 DGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVT-STGPFVVTWNFKKVKR 728 (794)
T ss_pred cCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEE-eccCEEEEEEHHHHhC
Confidence 1 011222222222222111 12334455642 2344544 4456899999753
Q ss_pred c-eeeEEecCCccCee--eEEEcCCCCEEEEec
Q 019006 308 R-RILYKLPGHTGSVN--ESVFHATEPVIGSCS 337 (347)
Q Consensus 308 ~-~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s 337 (347)
+ ..-|+++.-...|. ...|..++..|++--
T Consensus 729 g~~~~Y~ikry~~~V~~dnF~fg~d~~vival~ 761 (794)
T PF08553_consen 729 GKKDPYQIKRYDENVVADNFKFGSDKNVIVALP 761 (794)
T ss_pred CCCCceEEEEcCCceEEccceeCCCCcEEEEcc
Confidence 2 23345544444553 555666666665443
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.0015 Score=55.02 Aligned_cols=189 Identities=14% Similarity=0.211 Sum_probs=115.0
Q ss_pred EEEECC-CCCeEEEeeCCCc-EEEEeccCCCeee-------EEEeCcccceeEEEEcCCCCEEEEecC-----CCeEEEE
Q 019006 62 TMKFNP-AGTVIASGSHDRD-IFLWHVHGDCKNF-------MVLKGHKNAILDLHWTTDGSQIISASP-----DKTLRAW 127 (347)
Q Consensus 62 ~v~~~~-~~~~l~s~~~d~~-v~~w~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iw 127 (347)
.++.+| .+..+|.+-.-|+ ..+||..+..... ..+.|| -.|++||++|++.-. .|.|-||
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 456667 4456666666665 4567764332111 123444 359999999998743 4889999
Q ss_pred ECC-CCceeeeeeccCcceeEeecCCCCCCEEEEE-----------------cCCCceEEEeCCCCCceee--cC---CC
Q 019006 128 DVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSG-----------------SDDGTAKLWDMRQRGAIQT--FP---DK 184 (347)
Q Consensus 128 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------~~d~~i~iwd~~~~~~~~~--~~---~~ 184 (347)
|.. +.+.+.++..+.---..+...+++..++++- +.+-.+-..|..++..+.. ++ +.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 998 5566777766654444555666654444331 1223344455666666554 32 23
Q ss_pred CceEEEEEcCCCCeEEEEecCCc-------EEEEeCCCCceEEEec-------CCCCceeEEEECCCCCEEEEEc-CCCc
Q 019006 185 YQITAVSFSDASDKIYTGGIDND-------VKVWDLRKGEVSMTLQ-------GHQDMITGMSLSPDGSYLLTNG-MDCK 249 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~i~~v~~~~~~~~l~t~~-~d~~ 249 (347)
..+..+++.+++..++..-..|. |-+++. ++....+. .-..++-+|++++++.++++.+ ..+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 46888999988876666554442 344432 22222221 2246799999999998776555 6679
Q ss_pred EEEEeCCCC
Q 019006 250 LCIWDMRPY 258 (347)
Q Consensus 250 i~~wd~~~~ 258 (347)
+.+||..+.
T Consensus 241 ~~~~d~~tg 249 (305)
T PF07433_consen 241 VAVWDAATG 249 (305)
T ss_pred EEEEECCCC
Confidence 999998753
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.30 E-value=0.0011 Score=61.24 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=143.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc------cee--EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN------AIL--DLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+..+..++.++.++-.|.... +.......... .+. .+... ++..++.++.++.|.-+|.++++.+.++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 455667777888888887432 22111111110 110 01111 226788888999999999999998877654
Q ss_pred cCcc-----eeEeecCCCCCCEEEEEc---------CCCceEEEeCCCCCceeecCCCC---------------------
Q 019006 141 HNSF-----VNSCCPSRRGPPLVVSGS---------DDGTAKLWDMRQRGAIQTFPDKY--------------------- 185 (347)
Q Consensus 141 ~~~~-----v~~~~~~~~~~~~~~s~~---------~d~~i~iwd~~~~~~~~~~~~~~--------------------- 185 (347)
.... +.. .+.-.+ .+++.++ .++.+..+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~s-sP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 139 NDQVPPGYTMTG-APTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCCcCcceEecC-CCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 3321 110 000011 2444443 35788889998887765543210
Q ss_pred ce-EEEEEcCCCCeEEEEecCC------------------cEEEEeCCCCceEEEecCCCCcee------EEEEC----C
Q 019006 186 QI-TAVSFSDASDKIYTGGIDN------------------DVKVWDLRKGEVSMTLQGHQDMIT------GMSLS----P 236 (347)
Q Consensus 186 ~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~------~v~~~----~ 236 (347)
.+ ....+++.+..++.++.++ .|.-+|..+++....++.-..... ...+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 00 1234555567788887665 688999999998877642111111 00111 1
Q ss_pred CCC---EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe------------------e
Q 019006 237 DGS---YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG------------------S 295 (347)
Q Consensus 237 ~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg------------------s 295 (347)
++. .++.++.+|.+...|.++.+...+. ... ...++.+| ..+..+ .
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~--~~~---------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISAR--PEV---------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEe--Eee---------ccccccCC--ceEEEccccccccCcccccCCCCCC
Confidence 233 5778888999999998765432211 110 00112233 223222 2
Q ss_pred CCCeEEEEeCCCceeeEEecCCc--------cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 296 SDRMVYIWDTTSRRILYKLPGHT--------GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+|.|.-.|+.+++.+.+.+... .....-.....+..+..++.||.++-.|
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 46789999999999887765331 1111111112345677777888887665
No 325
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0018 Score=55.13 Aligned_cols=229 Identities=14% Similarity=0.194 Sum_probs=129.9
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee---------
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--------- 137 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------- 137 (347)
..++.|+.|..+| +++++........... +...|..+...++-+.++.-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999998 8888883222222222 223499999998877766654 59999999875433221
Q ss_pred -----eeccCcceeEee--cCCCCCCEEEEEcCCCceEEEeCCCC-----CceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 138 -----MAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQR-----GAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 138 -----~~~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.......+..++ ....+...++ .....+|.+|..... ...+.+.-...+..+.|. ++.++.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 011122233333 1222333333 334458888776542 345556666778888887 5677777654
Q ss_pred CcEEEEeCCCCceEEEecCC------------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc
Q 019006 206 NDVKVWDLRKGEVSMTLQGH------------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~------------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 273 (347)
...+.|+.++.....+... ..++..+.. +++.+|++- |..-.+-|.. ..+.. ...+
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r--~~~i----- 225 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSR--KSTI----- 225 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCc--ccEE-----
Confidence 4788898866543222111 122333333 345666653 3333344432 11111 1111
Q ss_pred ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 274 NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.+......+++ ...+|+.-+.+ .|.||++.++++++.+...
T Consensus 226 ~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 226 QWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EcCCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 12233445555 34688776665 5999999999999988754
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=7.7e-06 Score=73.10 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=60.5
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
....+.+++++|+...|+.|..||.|.+||...+... ...+.-.++.++|||++.+++.|+..|.+.+||+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 3467899999999999999999999999998776433 2233445789999999999999999999999996
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.22 E-value=0.00026 Score=68.55 Aligned_cols=231 Identities=15% Similarity=0.170 Sum_probs=131.9
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
+.|.++.|..+...++.+..+|.|.+-|.++.... ....-...|...+++++. .+++..+..+++.+-+- .-.++..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec-cccchhc
Confidence 68999999999999999999999999887765432 222234456667777765 46666666666655321 1111111
Q ss_pred c------CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEc----CC-C
Q 019006 181 F------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNG----MD-C 248 (347)
Q Consensus 181 ~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~----~d-~ 248 (347)
. ........+.|-.....| -|+ .|...-.+....+. ......+.. =++|+|.-||.++++.. .+ +
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCce
Confidence 1 111222333332211111 111 11111111100000 000111222 35689999999999842 23 7
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe---eCCCeEEEEeCCC---ceeeEEecCCccCee
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG---SSDRMVYIWDTTS---RRILYKLPGHTGSVN 322 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg---s~dg~i~vwd~~~---~~~~~~~~~h~~~v~ 322 (347)
.|++||.. ...+. ........-.+++|-|.|.++++- ++|+.|.+|.... ++..-.++....++.
T Consensus 223 kirV~drE-g~Lns--------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNS--------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred eEEEeccc-chhhc--------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchh
Confidence 99999965 11110 011112334577899999999874 3566899997432 332334455566799
Q ss_pred eEEEcCCCCEEEE---ecCCCcEEeec
Q 019006 323 ESVFHATEPVIGS---CSSDKQIYLGE 346 (347)
Q Consensus 323 ~~~~~~~~~~l~s---~s~D~~i~i~~ 346 (347)
.++|+.+..+||. +.....|++|.
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEE
Confidence 9999999999997 55666699985
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=2.1e-05 Score=70.43 Aligned_cols=87 Identities=18% Similarity=0.340 Sum_probs=68.5
Q ss_pred EEEeCCCCC----ceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 019006 168 KLWDMRQRG----AIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 168 ~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t 243 (347)
.+|+....+ .+..++....+.+.+++|+...++.|..||.|.+||...+..... + ..-..+.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecccceEEEEcCCCcEEEE
Confidence 345654433 234557778899999999999999999999999999876643322 2 2344678999999999999
Q ss_pred EcCCCcEEEEeCC
Q 019006 244 NGMDCKLCIWDMR 256 (347)
Q Consensus 244 ~~~d~~i~~wd~~ 256 (347)
|+..|.+.+||+.
T Consensus 317 ~s~qGelQ~FD~A 329 (545)
T PF11768_consen 317 GSEQGELQCFDMA 329 (545)
T ss_pred EcCCceEEEEEee
Confidence 9999999999985
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.17 E-value=0.0011 Score=61.06 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=72.5
Q ss_pred cCCCCeEEEEecCCcEEEEeCCC----C-ceEEEecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCc-----
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRK----G-EVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQ----- 261 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~----- 261 (347)
.+++++... .++.|.+.|.++ + +....+.- ......+.++|||+++++++. +.++.+.|+......
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 345666555 357899999987 3 34444433 345688999999999887764 789999999754310
Q ss_pred ---CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 262 ---NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 262 ---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
...+...+ .-......+|.++|....+-..|..|-.||+..
T Consensus 362 ~~~~~vvaeve-----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPE-----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeec-----cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 01111111 111234678999999888888999999999876
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.13 E-value=0.0019 Score=57.50 Aligned_cols=234 Identities=13% Similarity=0.131 Sum_probs=121.5
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC------------------------------------------eeeEEE
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC------------------------------------------KNFMVL 96 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~------------------------------------------~~~~~~ 96 (347)
.|..|+|+++..-||+|-..|.|.+|....+. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999998653110 011123
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee--c------cCcceeEeec----CCCCC---CEEEEE
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA--E------HNSFVNSCCP----SRRGP---PLVVSG 161 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~----~~~~~---~~~~s~ 161 (347)
....++|++++.| |-.+++.|..+|.+.|.|++....+..-. . ....+..+.| ...+. .+++.|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3446789999987 45589999999999999997665544321 1 1122333322 22222 367889
Q ss_pred cCCCceEEEeCC--CCCc-----eeec-CCCCceEEEE-EcCCC--------------------CeEEEEecCCcEEEEe
Q 019006 162 SDDGTAKLWDMR--QRGA-----IQTF-PDKYQITAVS-FSDAS--------------------DKIYTGGIDNDVKVWD 212 (347)
Q Consensus 162 ~~d~~i~iwd~~--~~~~-----~~~~-~~~~~v~~~~-~~~~~--------------------~~l~~~~~dg~i~iwd 212 (347)
++.|.+.+|.+. .+.. .... .+...+..+. ++.+. +.++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999764 1111 1111 2233333332 22211 2244445566799999
Q ss_pred CCCCceEEEecCCCCceeEEEEC-----CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 213 LRKGEVSMTLQGHQDMITGMSLS-----PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~v~~~-----~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
..+.+.........-....+.+- ..+..|++-..+|.++++.+-..+. +....-........+....++++
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke----i~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE----IKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E----EEEEE-SS---HHHHTT-EE-TT
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH----hhcccCCCccccccccccEECCC
Confidence 88777655544221222334442 3466788888999999999864332 22222111101122334557888
Q ss_pred CCEEEEeeCC
Q 019006 288 GSKVTAGSSD 297 (347)
Q Consensus 288 g~~l~sgs~d 297 (347)
|..++-.+..
T Consensus 318 Gdi~~~~gps 327 (395)
T PF08596_consen 318 GDIFYWTGPS 327 (395)
T ss_dssp S-EEEE-SSS
T ss_pred CCEEEEeCcc
Confidence 8877665543
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.004 Score=57.60 Aligned_cols=238 Identities=16% Similarity=0.119 Sum_probs=122.7
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccc--eeEEEEcC--CCCEEEEec---------CCCeEEEEECCCCceee
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNA--ILDLHWTT--DGSQIISAS---------PDKTLRAWDVETGKQIK 136 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~ 136 (347)
..++.++.++.|+.+|.... +..-........ -..+.-+| .+..++.++ .+|.+..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG-~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG-KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCC-CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 56667778888888887532 222222111110 00011111 123444443 46889999999998877
Q ss_pred eeeccCcc--------------------eeE-eecCCCCCCEEEEEcCCC------------------ceEEEeCCCCCc
Q 019006 137 KMAEHNSF--------------------VNS-CCPSRRGPPLVVSGSDDG------------------TAKLWDMRQRGA 177 (347)
Q Consensus 137 ~~~~~~~~--------------------v~~-~~~~~~~~~~~~s~~~d~------------------~i~iwd~~~~~~ 177 (347)
.+...... +.. ..... ...+++.++.++ .+.-+|+.+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 66432110 000 00011 124566676554 688889988887
Q ss_pred eeecCCC-Cc-----e-EEEEEc----CCCC---eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 019006 178 IQTFPDK-YQ-----I-TAVSFS----DASD---KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 178 ~~~~~~~-~~-----v-~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t 243 (347)
.-.+... .. . ....+. -++. .++.++.+|.++.+|.++|+.+...... ...++.+| ..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 7655321 10 0 000111 1222 5778889999999999999987765321 11123333 22222
Q ss_pred E------------------cCCCcEEEEeCCCCCCcCceeEEEecccccc--ccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 244 N------------------GMDCKLCIWDMRPYAPQNRCVKILEGHQHNF--EKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 244 ~------------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
+ ..+|.+.-.|+.+.+...+ .....+.... ............+..|+.|+.||.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~--~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWE--KREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeE--eeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 1 1245566666554321111 1111000000 0001000011256789999999999999
Q ss_pred eCCCceeeEEecC
Q 019006 304 DTTSRRILYKLPG 316 (347)
Q Consensus 304 d~~~~~~~~~~~~ 316 (347)
|..+|+++.+.+-
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999987654
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.10 E-value=0.0016 Score=58.83 Aligned_cols=221 Identities=11% Similarity=0.106 Sum_probs=110.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE-eCCCCCce
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-DMRQRGAI 178 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw-d~~~~~~~ 178 (347)
......+.++|+|+.++. +.||.-.|+.....+. ... +.....+|... ..++.-..+.+|.++ ++.. ...
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-k~~----G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~-~~~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-KAF----GSGLSFVWSSR--NRYAVLESSSTIKIYKNFKN-EVV 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-EEE----EE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE--TT
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-ccc----CceeEEEEecC--ccEEEEECCCeEEEEEcCcc-ccc
Confidence 334688999999998887 5677777877433332 122 11223444443 346666668889996 4432 222
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..+.....+..+-. |..|...+.+ .|.+||..+++.+.++... .|..+.|++++++++..+.+ .+.+++....
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 23333333333332 6666666554 7999999999998888753 48899999999999998866 6777764311
Q ss_pred -------CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 259 -------APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 259 -------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
......+..+. .....|.+..|..| -++.+... .|+.+--.....+..+ ...+.-+.+.+...
T Consensus 176 ~~~~~~~~g~e~~f~~~~----E~~~~IkSg~W~~d-~fiYtT~~--~lkYl~~Ge~~~i~~l---d~~~yllgy~~~~~ 245 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIH----EISERIKSGCWVED-CFIYTTSN--HLKYLVNGETGIIAHL---DKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHBTTTB-GGGEEEEE----EE-S--SEEEEETT-EEEEE-TT--EEEEEETTEEEEEEE----SS--EEEEEETTTT
T ss_pred hcccccccCchhceEEEE----EecceeEEEEEEcC-EEEEEcCC--eEEEEEcCCcceEEEc---CCceEEEEEEccCC
Confidence 00000122221 11245667777665 33444333 5555322222223333 34666777778777
Q ss_pred EEEEecCCCcEEeec
Q 019006 332 VIGSCSSDKQIYLGE 346 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~ 346 (347)
.+.....|+.|....
T Consensus 246 ~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 246 RLYLIDRDGNVISYE 260 (443)
T ss_dssp EEEEE-TT--EEEEE
T ss_pred EEEEEECCCCEEEEE
Confidence 888888888876654
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=1.9e-06 Score=77.31 Aligned_cols=199 Identities=15% Similarity=0.267 Sum_probs=124.9
Q ss_pred ceeEEEEcCCC--CEEEEecCCCeEEEEECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEc----CCCceEEEeCC
Q 019006 102 AILDLHWTTDG--SQIISASPDKTLRAWDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGS----DDGTAKLWDMR 173 (347)
Q Consensus 102 ~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~d~~i~iwd~~ 173 (347)
.+.++++.-+. ..++.|..+|.|-+-.+....- -.....+....++.++.+.+...+++|- .|-.+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45566665433 4677888999999877654221 1223344556666777776666676664 45678999998
Q ss_pred CC--Cceee--cC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECC-CCCEEEEEc
Q 019006 174 QR--GAIQT--FP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSP-DGSYLLTNG 245 (347)
Q Consensus 174 ~~--~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~-~~~~l~t~~ 245 (347)
++ .+... +. ......+++|..+.+.+.+|.....+.++|+|... ....+ .+..+..+.+.| ..+|+++..
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc
Confidence 76 22221 11 22345688888888899999999999999998432 22222 233566778888 677877766
Q ss_pred CCCcEEEEe-CCCCCCcCceeEEEeccccccccceEEEEECCCC-CEEEEee-CCCeEEEEeCC
Q 019006 246 MDCKLCIWD-MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG-SKVTAGS-SDRMVYIWDTT 306 (347)
Q Consensus 246 ~d~~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs-~dg~i~vwd~~ 306 (347)
||.|.+|| .+..+ ..+..+..........+..++|.|.. .+|++.+ ..++|+++|..
T Consensus 216 -dg~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 44322 11222211111223468889999853 3455544 45789999864
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.07 E-value=0.002 Score=58.14 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=114.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
+....-....|+++|+|+.+++ ..||.-.++.... .+... .+.-....|.+.+ .+|+-...++|.|+.--+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 3334456889999999999988 5667777777432 22211 2344677899854 5666666888999632222
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEe
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWD 212 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 212 (347)
+....+... ..+..+.. + .++...+. +.|.+||..+++.+..+.... |..+.|++++.+++..+.+ .+++++
T Consensus 100 ~~~k~i~~~-~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT-----S-S-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcCC-cccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 222233221 11222222 3 34444433 479999999999998887653 8899999999999888765 677776
Q ss_pred CCCC----------c-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 213 LRKG----------E-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 213 ~~~~----------~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
.... + ....+..-...|.+.+|..+ -++.|... .++.+--. . ...+.. .+.++.-
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl~~G------e-~~~i~~----ld~~~yl 237 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYLVNG------E-TGIIAH----LDKPLYL 237 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEEETT------E-EEEEEE-----SS--EE
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEEEcC------C-cceEEE----cCCceEE
Confidence 4322 0 11222221457888899765 44445443 66664211 1 111111 1234555
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+.+.|+.+.|.....|+.+..+.+....
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 6667777788888888888877665433
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=8.8e-05 Score=69.09 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE
Q 019006 163 DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 163 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
..|.+.||- .++.+-........+++++|+|..-.|+.|=.-|.+.+|...+.+.......|..+|..+.|+++|+.++
T Consensus 39 r~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLM 117 (1416)
T ss_pred CCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEE
Confidence 457777773 3444444444556688899999887888888889999998876666666667899999999999999999
Q ss_pred EEcCCCcEEEEeCC
Q 019006 243 TNGMDCKLCIWDMR 256 (347)
Q Consensus 243 t~~~d~~i~~wd~~ 256 (347)
|+..-|.+.+|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999765
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.0011 Score=59.67 Aligned_cols=185 Identities=20% Similarity=0.123 Sum_probs=100.8
Q ss_pred ceeEeecCCCCCCEEEEEcCC---CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE-EecCC--cEEEEeCCCCc
Q 019006 144 FVNSCCPSRRGPPLVVSGSDD---GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT-GGIDN--DVKVWDLRKGE 217 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~ 217 (347)
.+..-.+++....+....-.. ..+.++|+.++...........-..-.|+|+++.++. ...|| .|+++|+....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 333344555554433332222 3588889887766555544444555689999998764 44555 47788887766
Q ss_pred eEEEecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC
Q 019006 218 VSMTLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 218 ~~~~~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
... +..-...-..-.|+|+|++++= .+..|.-.||-....... ...+...... -..-.|+|||++|+..+.
T Consensus 274 ~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~---~~riT~~~~~----~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 274 LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ---VTRLTFSGGG----NSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---eeEeeccCCC----CcCccCCCCCCEEEEEec
Confidence 333 3222222235679999998764 455565555543321111 1112111111 114458999999987664
Q ss_pred -CCe--EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec
Q 019006 297 -DRM--VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 297 -dg~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 337 (347)
+|. |.+.|..++.-+ +...+......-.|.+++..+...+
T Consensus 346 ~~g~~~i~~~~~~~~~~~-~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 346 SGGQWDIDKNDLASGGKI-RILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cCCceeeEEeccCCCCcE-EEccccccCCCCCcCCCCceEEEec
Confidence 354 667777665533 2223333344455666666555443
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00024 Score=67.68 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=91.3
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCc-eeEEEECCC-------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPD-------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~-------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
...+.|+-.|+..|+.+.++..|... |.. +.|+ ....+.|-.++.+..||.|-.. .+++. ...+.-.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~-~~~k~Y~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVD-SQSKQYS 575 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC--Cceee-ccccccc
Confidence 45678999999999999999887653 444 4443 2345666678899999998432 22221 1111111
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
-...+.+++-+.+ .+||+||.+|.||+||....+-...+++-..+|..|..+.+|++|..++..-.
T Consensus 576 ~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyL 641 (794)
T PF08553_consen 576 SKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYL 641 (794)
T ss_pred cCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceE
Confidence 1234555555555 48999999999999996544444567888899999999999998876665433
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=7.2e-05 Score=63.75 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=75.6
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTG 202 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 202 (347)
+++.+..+.+...-+..+...+.++++++....++..++.+.+|++.|+++...+..+.....+.+++|+-+. .++++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 5555544444444555677788889998887778999999999999999999888888777889999998665 467888
Q ss_pred ecCCcEEEEeCCCCc
Q 019006 203 GIDNDVKVWDLRKGE 217 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~ 217 (347)
-.+|.|++||++..+
T Consensus 255 l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEEccCCC
Confidence 899999999998754
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0096 Score=53.21 Aligned_cols=192 Identities=17% Similarity=0.230 Sum_probs=128.4
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec---CCcEEEEeCCCCceEEEecC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~ 224 (347)
....+.+.+.++....++.+.+.|...........-......++++++++.++.+.. ++++.+.|..+++...+...
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 445556666777777789999999877776666655456778999999988887665 68899999888877766543
Q ss_pred CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeE
Q 019006 225 HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMV 300 (347)
Q Consensus 225 ~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i 300 (347)
-..+ ..++++|+|+.++... .++.|.+.|...... .................+.++|+|.++...-.. +.+
T Consensus 159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v----~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV----VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce----eccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 3334 8899999999666554 778999999653211 100000001111234567789999977665433 699
Q ss_pred EEEeCCCceeeEE-ecCCccCeeeEEEcCCCCEEEEecCC-CcEEe
Q 019006 301 YIWDTTSRRILYK-LPGHTGSVNESVFHATEPVIGSCSSD-KQIYL 344 (347)
Q Consensus 301 ~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~D-~~i~i 344 (347)
...|..++..... +..-......++++|++..+-..... +.+.+
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 9999998877654 22222246678899999877655332 44443
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.012 Score=53.11 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=85.2
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec--cCcceeEe-----ecCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE--HNSFVNSC-----CPSR 152 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~-----~~~~ 152 (347)
.|.+|+..|.......++. +.+.++.|+.+ ..|+....||.++++|+.... ...+.. ....+..+ .+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~--~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS--GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECC--CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 4888888765332333444 78999999975 566777899999999986322 111100 11111111 1111
Q ss_pred CCCCEEEEEcCCCceEEEe-CCCCCcee---ecCCCC-------ceEE-EEEcCCCCeEEEEecCCcEEEEeCCCCceEE
Q 019006 153 RGPPLVVSGSDDGTAKLWD-MRQRGAIQ---TFPDKY-------QITA-VSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iwd-~~~~~~~~---~~~~~~-------~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (347)
. + +++ -..++.+.+.+ ........ ..+... .... ..++.+....+....++.+.+.+-...+.
T Consensus 138 ~-G-ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 N-G-IVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred C-C-EEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 2 2 222 23344444432 22111111 111100 0000 22333344444444445555443222111
Q ss_pred EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+. ..+++..|++||+++++|.-..+|.+.+....
T Consensus 213 -i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 213 -ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred -cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 22 23579999999999999999999999888643
No 341
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0093 Score=51.21 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=122.5
Q ss_pred EcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----
Q 019006 108 WTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---- 182 (347)
Q Consensus 108 ~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---- 182 (347)
|.++...| .+--..+.|.-|+..+++. ..+. ....+.......... +++++. .-+.+++...+..+..+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEeccccC
Confidence 66665543 3444567788888776543 1222 222222222222222 344433 335666665444422221
Q ss_pred --CCCceEEEEEcCCCCeEEEEec-----------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CC
Q 019006 183 --DKYQITAVSFSDASDKIYTGGI-----------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DC 248 (347)
Q Consensus 183 --~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~ 248 (347)
.....+.....|++.+-+.... -|.|+.+|. .+.....+..+-..-++|+||||++.|+.+.. .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1235677888888776654333 133555554 45555555554455688999999987777654 47
Q ss_pred cEEEEeCCC--CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-eEEEEeCCCceeeEEecCCccCeeeEE
Q 019006 249 KLCIWDMRP--YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-MVYIWDTTSRRILYKLPGHTGSVNESV 325 (347)
Q Consensus 249 ~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~~ 325 (347)
.|.-|++.. .....+........ .....-.++...+|.+-+++-.+| .|.+|+.+ ++++.++.-....+.+++
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~---~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDE---EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccC---CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 888887753 11111110111111 122333455667888876555554 89999998 888888776667788888
Q ss_pred EcCC--CCEEEEecCC
Q 019006 326 FHAT--EPVIGSCSSD 339 (347)
Q Consensus 326 ~~~~--~~~l~s~s~D 339 (347)
|--. +.+++|+...
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 8664 3455554443
No 342
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00024 Score=62.96 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=96.6
Q ss_pred CCCeE-EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-------EEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 195 ASDKI-YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-------YLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 195 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-------~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
+.+.+ .++.....++-.|+..|+.+.++.-+.+ |+-+.+.|+.. .-+.|-.|+.|.-||.|-... ..+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--NKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--ceee
Confidence 33444 4566677899999999999999887766 77777887653 234455688999999984321 1222
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
..+.|+-.-.....+.+-.. ..++++||.+|.|++||-...+-..-+++-..+|..+..+.+|++|...+..
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 23333222222333443333 4589999999999999974444445688999999999999999987766543
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.007 Score=49.20 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE-EE
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT-AV 190 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~-~~ 190 (347)
..+++.|+..+.+.--|..+|+...+.......-.+... - +++++.|...|.+.+.+.+++..+..+.....|. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--E-CCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 356777777788887788877765443222111111111 1 2468889999999999999998777665444332 24
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 191 SFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
..++++..++.|+.|+..+..|.++..++...+--...-.+-+..|
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 4678899999999999999999999888887654333233334455
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.93 E-value=0.011 Score=51.55 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=116.7
Q ss_pred EECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeecc
Q 019006 64 KFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEH 141 (347)
Q Consensus 64 ~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 141 (347)
.|.++|+ +|+++..||.-.+|-++=.......|.... .......++++++.++-...+..++-.|+++.+...-+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 4667885 455566676654444432223344444332 22334567888888876666678888899887654333333
Q ss_pred CcceeEeec--CCCCCCEEEEEc----------------------CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 142 NSFVNSCCP--SRRGPPLVVSGS----------------------DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 142 ~~~v~~~~~--~~~~~~~~~s~~----------------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
...+....+ ..+. .+++..- ....|...|+++++....+.....+.-+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 333321111 2222 2222110 11234445666666555555566678888999877
Q ss_pred eEEEEecCC-----cEEEEeCCC-CceEEEecCCCC--ceeEEEECCCCCEEEEE-----cCCCcEEEEeCCCCCCcCce
Q 019006 198 KIYTGGIDN-----DVKVWDLRK-GEVSMTLQGHQD--MITGMSLSPDGSYLLTN-----GMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 198 ~l~~~~~dg-----~i~iwd~~~-~~~~~~~~~~~~--~i~~v~~~~~~~~l~t~-----~~d~~i~~wd~~~~~~~~~~ 264 (347)
.++.=+..| .-|||-+++ +.....+..+.. .+.-=-|.|+|..+.=- +.+..|.-+|+..... +.
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~--~~ 278 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER--RR 278 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E--EE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc--eE
Confidence 666533322 236675543 222233322221 22333478888765432 2234455556553211 11
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCC----------------CeEEEEeCCCceeeEEecCCc---------c
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD----------------RMVYIWDTTSRRILYKLPGHT---------G 319 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d----------------g~i~vwd~~~~~~~~~~~~h~---------~ 319 (347)
+... ....-.--++||++++-=+.| -.|+++++..++.. .+..|. .
T Consensus 279 ~~~~--------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 279 LMEM--------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDR 349 (386)
T ss_dssp EEEE---------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBS
T ss_pred EEeC--------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCC
Confidence 1111 122333457899988753333 25778888776543 122221 1
Q ss_pred C--eeeEEEcCCCCEEEEec-CCCcEE
Q 019006 320 S--VNESVFHATEPVIGSCS-SDKQIY 343 (347)
Q Consensus 320 ~--v~~~~~~~~~~~l~s~s-~D~~i~ 343 (347)
- =....|+||+++++-.| ..|...
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~ 376 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPA 376 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-E
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCcc
Confidence 1 15678999999777555 455533
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0044 Score=55.79 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=104.6
Q ss_pred cceeEEEEcCCCCEEEEec---CC-CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE--eCCC
Q 019006 101 NAILDLHWTTDGSQIISAS---PD-KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW--DMRQ 174 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~ 174 (347)
..+..=+|+|++..++-.. .. ..+.++++++++...... -......-.+++++..++++...||...+| |+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3455567999988766442 22 468899998876543332 112222245678888888888888876655 7766
Q ss_pred CCceeecCCC-CceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCC-C
Q 019006 175 RGAIQTFPDK-YQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMD-C 248 (347)
Q Consensus 175 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d-~ 248 (347)
+...+ +.+. ..-..-.|+|+|..++-.+. .| .|.++|...+.... +...-.. ..-.|+|+|++++..+.. |
T Consensus 272 ~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 272 KNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred Cccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCEEEEEeccCC
Confidence 65333 3322 22335678999998875553 44 47777776654322 2222222 256789999998877643 4
Q ss_pred c--EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC
Q 019006 249 K--LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 249 ~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
. |.+.|+..... .+.+.... ....-.|.++|..++..+.
T Consensus 349 ~~~i~~~~~~~~~~----~~~lt~~~-----~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGK----IRILTSTY-----LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCc----EEEccccc-----cCCCCCcCCCCceEEEecc
Confidence 3 44444432211 22222111 1123346788887765443
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=4.7e-05 Score=42.44 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=34.2
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.+..+.+|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.87 E-value=0.0033 Score=54.84 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=96.8
Q ss_pred CceEEEeCCCC----Cc---eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecC-CCCceeEEEEC
Q 019006 165 GTAKLWDMRQR----GA---IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQG-HQDMITGMSLS 235 (347)
Q Consensus 165 ~~i~iwd~~~~----~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~i~~v~~~ 235 (347)
|.|.++++... .. +.....+..|++++-- +..++++ ..+.|++|++...+ ....-.. ....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 88999999874 12 2223345678887765 3444433 34789999988776 3322211 2234555554
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-------c
Q 019006 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-------R 308 (347)
Q Consensus 236 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-------~ 308 (347)
.+++++.|.....+.++..+. ....+..+... .....+.++.|-+++..++.+..+|.+.++.... +
T Consensus 138 -~~~~I~vgD~~~sv~~~~~~~---~~~~l~~va~d--~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~ 211 (321)
T PF03178_consen 138 -FKNYILVGDAMKSVSLLRYDE---ENNKLILVARD--YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDG 211 (321)
T ss_dssp -ETTEEEEEESSSSEEEEEEET---TTE-EEEEEEE--SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTT
T ss_pred -cccEEEEEEcccCEEEEEEEc---cCCEEEEEEec--CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccc
Confidence 367999998888888875543 11212222211 1134577888876777999999999999997653 1
Q ss_pred --eeeEEecCC-ccCeeeE---EEcCC--C------CEEEEecCCCcEE
Q 019006 309 --RILYKLPGH-TGSVNES---VFHAT--E------PVIGSCSSDKQIY 343 (347)
Q Consensus 309 --~~~~~~~~h-~~~v~~~---~~~~~--~------~~l~s~s~D~~i~ 343 (347)
++.....-| ...|+.+ .+.|. + +.+..++.+|.|.
T Consensus 212 ~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 212 DPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp TTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred cccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 222222223 3456666 55552 2 2477888898886
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.81 E-value=5.2e-05 Score=42.23 Aligned_cols=37 Identities=38% Similarity=0.664 Sum_probs=33.2
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEe
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~ 85 (347)
++..+.+|...|.++.|++.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456778999999999999999999999999999995
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=0.0036 Score=57.87 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCeEEEEECCC----CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc------------eeecCCC
Q 019006 121 DKTLRAWDVET----GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA------------IQTFPDK 184 (347)
Q Consensus 121 dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------------~~~~~~~ 184 (347)
++.|.+.|..+ +..+.....-......+..++++..+++++..+.++-+.|+.+.+. +...+-.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 35677777776 3233333333444556778888888888888999999999986442 2222223
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
......+|+++++...+-.-|..|..||+..
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3445678899888777788899999999875
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.023 Score=50.81 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=131.9
Q ss_pred cEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC---CCeEEEEECCCCce
Q 019006 59 AVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP---DKTLRAWDVETGKQ 134 (347)
Q Consensus 59 ~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~ 134 (347)
.-..++.++.+. ..++...++.|.+.|............+. .-..++++++++.+..+.. ++++.+.|..+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 344667788777 55556667889998854332222222232 5578899999988776655 68899999888887
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----ecCCCCceEEEEEcCCCCeEEEEecC---C
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-----TFPDKYQITAVSFSDASDKIYTGGID---N 206 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d---g 206 (347)
.......... ....+.+.+....++-..++++.+.|.......+ ..........+.+++++..+++.... +
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 7764433323 5667778877677777789999999976655443 12222345678899999977765443 5
Q ss_pred cEEEEeCCCCceEEE-ecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCC
Q 019006 207 DVKVWDLRKGEVSMT-LQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~ 257 (347)
.+...|..++..... ...-......+.++|+|.++.+.. ..+.+.+.|...
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 899999888765544 221111346688999999888874 447888888764
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.016 Score=52.22 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=70.0
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCC-CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH-QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
...+..++++|++++++.-..+|.+.+.+..-.+...++... ......|.|+-+...++.- +..+.+.....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----- 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG----- 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC-----
Confidence 457999999999999999999999999877655555554433 2345667776543322222 22344432110
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
. .+.|.-++..++..-.|| +||+....-+.+++++.....|
T Consensus 289 --------------~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~~i 329 (410)
T PF04841_consen 289 --------------D---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTENI 329 (410)
T ss_pred --------------C---ceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHHHHH
Confidence 0 122334455556666676 8999887778888876544443
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.72 E-value=0.02 Score=47.53 Aligned_cols=198 Identities=14% Similarity=0.264 Sum_probs=104.5
Q ss_pred EecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.+-...+..|+|+|+.. ++|+....+.|.-.+..++......+.+. .-.-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3556667799999999755 66677778888877775543222334443 346788888888777777678999999884
Q ss_pred CCce------eeeee-----ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC---CCceee-----cC----CCCce
Q 019006 131 TGKQ------IKKMA-----EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ---RGAIQT-----FP----DKYQI 187 (347)
Q Consensus 131 ~~~~------~~~~~-----~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---~~~~~~-----~~----~~~~v 187 (347)
.... ...+. .++.....+++.+.+..++++ -...-..++.+.. ...+.. +. ....+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3211 11121 123335567777766555554 4444555665543 111110 11 22357
Q ss_pred EEEEEcCCCCeEE-EEecCCcEEEEeCCCCceEEEecCCC---------CceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 188 TAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQGHQ---------DMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 188 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
.++.++|..+.++ .......|..+| ..|+.+..+.-.. .....|+|.++|+..++ +.-+.+.+|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8899999876555 455677788888 5666554432211 24678999998865555 455544443
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00053 Score=62.77 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
+.--+++..+.+++.|+.-|.+++|+-..++... ...+-...+...+.+++..++|.|+..|.|.++-+....+ ....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDLD 114 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Ccce
Confidence 4444556678899999999999999976654332 2223345566778898888889999999999998775222 2222
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce----eeEEecCCccCeeeEEEc
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR----ILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~ 327 (347)
.....+ ......|.++.|++++..|++|...|+|.+-.+.+.. ..+.+..-..+|..+.+.
T Consensus 115 ~~t~~d-~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 115 YVTPCD-KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eecccc-ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 222222 2245789999999999999999999999998877621 112233334566665553
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.63 E-value=0.041 Score=48.73 Aligned_cols=249 Identities=17% Similarity=0.257 Sum_probs=122.0
Q ss_pred CCCCCeEEEee---------CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 66 NPAGTVIASGS---------HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 66 ~~~~~~l~s~~---------~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
|||++.++... ..+.+.+|++... ....+......+....|+|+|+.++-.. ++.|.+++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 46676655532 2356788888542 2223333356788899999999988774 5789999887764332
Q ss_pred eeeccC------------------cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC---CceEEEEEcCC
Q 019006 137 KMAEHN------------------SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK---YQITAVSFSDA 195 (347)
Q Consensus 137 ~~~~~~------------------~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~ 195 (347)
+...+ ..-..+.+++++..+++.--++..+..+.+..- .... -.+..+.+-..
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~-----~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY-----SPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE-----SSSTESS-EEEEEE--BT
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc-----CCccccCCcccccccCCC
Confidence 21111 011234456666555555545555554432110 0111 12333333222
Q ss_pred CCeEEEEecCC--cEEEEeCCCCceE-EEec----CCCCceeEEEECCCCCEEEEE--cCCC---cEEEEeCCCCCCcCc
Q 019006 196 SDKIYTGGIDN--DVKVWDLRKGEVS-MTLQ----GHQDMITGMSLSPDGSYLLTN--GMDC---KLCIWDMRPYAPQNR 263 (347)
Q Consensus 196 ~~~l~~~~~dg--~i~iwd~~~~~~~-~~~~----~~~~~i~~v~~~~~~~~l~t~--~~d~---~i~~wd~~~~~~~~~ 263 (347)
| ..+- .+.++|+.+++.. .... .-...+..+.|.++++.++.. ..+. .+.+.|.....
T Consensus 152 G------~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~---- 221 (353)
T PF00930_consen 152 G------DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE---- 221 (353)
T ss_dssp T------S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT----
T ss_pred C------CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc----
Confidence 2 2222 3667888877642 2222 234568899999998844433 3332 45556665321
Q ss_pred eeEEEeccccccccceEEEEEC-CCCC-EEEEeeCCCe--EEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWS-PDGS-KVTAGSSDRM--VYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIG 334 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s-~~g~-~l~sgs~dg~--i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~ 334 (347)
+...........-.......|. +++. +|.....||. |++++...+.. ..+....-.|. -+.|++++..|.
T Consensus 222 ~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 222 TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEE
T ss_pred eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEE
Confidence 1111222121222222233343 5554 4445556775 56667666653 35655555664 467788876544
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.60 E-value=0.0056 Score=43.22 Aligned_cols=102 Identities=15% Similarity=0.236 Sum_probs=63.1
Q ss_pred EEEEEECC---CC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 60 VYTMKFNP---AG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 60 V~~v~~~~---~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
|++|++.. +| +-|++|+.|..|++|+-+ .....+. -.+.|+++.-... .+++.+-.+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence 56666543 33 579999999999999753 2223333 3457788776655 578889999999998743 233
Q ss_pred eeeeccCcceeEee--cCCCCCCEEEEEcCCCceE
Q 019006 136 KKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 136 ~~~~~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~ 168 (347)
...+.....+.... ...++.+-+++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 34433333222222 2233344577787777763
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.00016 Score=57.31 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=89.4
Q ss_pred EEEEecCCcEEEEeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+..-+.+|.|+-++++..+....- ..|... +..-..+..+++|+.+|.|.+|+..........+.. ..+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc------cccc
Confidence 445677888888877654322111 111111 222234578999999999999987532111110000 0011
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEe--cCCCcEEeecC
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSC--SSDKQIYLGEI 347 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--s~D~~i~i~~~ 347 (347)
...-+.-..++.+..++..||.||.|+....+.+.....|. .++.....+..+++++++ |.|..++.|++
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 11111223456688899999999999999999888887887 677888888888888888 88888888875
No 357
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.55 E-value=0.029 Score=45.08 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=85.4
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC--------CceeEEEECCCCCEE-EEEcCCCcEEEEe
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--------DMITGMSLSPDGSYL-LTNGMDCKLCIWD 254 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~v~~~~~~~~l-~t~~~d~~i~~wd 254 (347)
+.+.+.-..+|+|+++.-...|-. -.+....+.....+.+|+ .--+.++|+.+.+.+ ++-+.+.+|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345667778899988442222211 112222222222233332 223567888765544 4556677887788
Q ss_pred CC--CCCCcC-ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC-
Q 019006 255 MR--PYAPQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE- 330 (347)
Q Consensus 255 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~- 330 (347)
.. .....+ +.+..++..+..-.-..-.++..-+|.+.++.-..++|..+|..+|+++.++.-....|++++|.-.+
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 43 211111 12222222110000011122335578888888888999999999999998887778889999998763
Q ss_pred -CEEEEecC
Q 019006 331 -PVIGSCSS 338 (347)
Q Consensus 331 -~~l~s~s~ 338 (347)
-+..|+..
T Consensus 267 d~~yvT~aa 275 (310)
T KOG4499|consen 267 DILYVTTAA 275 (310)
T ss_pred cEEEEEehh
Confidence 34455543
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.55 E-value=0.02 Score=51.13 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=117.2
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---C-
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---G- 176 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~- 176 (347)
.|+.+.|.++...|+.+-..|.|-+|.....+.-. .+. .......+. . + ...++.-.+-|+..+ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~----~-~--~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFR----R-F--SLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------------S-----GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCcccc----c-c--cccCCCcceEEehhhCCccc
Confidence 57899999998899999999999998765432211 000 000000000 0 0 111122233343321 1
Q ss_pred -----ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe--cC------CCCceeEEEECC-----C
Q 019006 177 -----AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL--QG------HQDMITGMSLSP-----D 237 (347)
Q Consensus 177 -----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~------~~~~i~~v~~~~-----~ 237 (347)
+...+. ....|++++.+ +-.+++.|..+|.+.|.|+|....++.- .. ....++++.|.. |
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred ccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 111111 25689999987 5679999999999999999987766542 11 234577887752 2
Q ss_pred C---CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE-ECCC---------------------CCEEE
Q 019006 238 G---SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG-WSPD---------------------GSKVT 292 (347)
Q Consensus 238 ~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~---------------------g~~l~ 292 (347)
+ -.|++|...|.+.+|.+.+.. .+.....+..........+..+. ++.+ ..+++
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~-~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSS-NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-G-GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCC-CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 2 478888889999999886421 12211111111111122333222 2111 11333
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeeeEEE-----cCCCCEEEEecCCCcEEeec
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF-----HATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-----~~~~~~l~s~s~D~~i~i~~ 346 (347)
. ..+..++++...+.+...+.....-....+.+ ...+..|++--.||.|++.-
T Consensus 231 v-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 231 V-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp E-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred E-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 3 34568999999887776655433223334445 23567888888999998763
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.54 E-value=0.05 Score=47.47 Aligned_cols=173 Identities=15% Similarity=0.228 Sum_probs=96.0
Q ss_pred CeEEEEECCCC----ceeeee--eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec--CCCCceEEEEE
Q 019006 122 KTLRAWDVETG----KQIKKM--AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF--PDKYQITAVSF 192 (347)
Q Consensus 122 g~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~--~~~~~v~~~~~ 192 (347)
|.+.++++... ..+..+ ....+.|.+++.. ++.++++. .+.+.+|++...+ ..... .....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999874 222222 2345667777665 23344433 4789999998777 43332 23334555554
Q ss_pred cCCCCeEEEEecCCcEEEEeCCC-CceEEEe--cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC---cC--ce
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRK-GEVSMTL--QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP---QN--RC 264 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~--~~ 264 (347)
. ++++++|.....+.++..+. ......+ ......++++.|-++++.++.+..+|.+.++...+... .. +.
T Consensus 138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 138 F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 4 56899999888888774433 2212222 12234578888876667999999999999998763211 11 22
Q ss_pred eEEEeccccccccceEEE---EECC--CCC------EEEEeeCCCeEEEE
Q 019006 265 VKILEGHQHNFEKNLLKC---GWSP--DGS------KVTAGSSDRMVYIW 303 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~~s~--~g~------~l~sgs~dg~i~vw 303 (347)
.....-|. ...+.++ .+.| .+. .++.++.+|.|.+.
T Consensus 216 ~~~~~f~l---g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 216 ERISSFHL---GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeEEEEEC---CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22222222 2334444 4455 222 48888899998844
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0059 Score=54.50 Aligned_cols=141 Identities=21% Similarity=0.357 Sum_probs=91.7
Q ss_pred CCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCC------CCEEEEEcCCCceEEEeCCCCCc--e---
Q 019006 111 DGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG------PPLVVSGSDDGTAKLWDMRQRGA--I--- 178 (347)
Q Consensus 111 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~s~~~d~~i~iwd~~~~~~--~--- 178 (347)
+.++|+ ++..-..++-.|++.|+.+.....+.. |..+...+.. ..--+.|-.+..|.-||.|-... +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 444556688889999998888776665 2222221111 11223477888999999874332 1
Q ss_pred --eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 179 --QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 179 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+.+..+....|.+-.. ..++++|+.+|.||+||- .+. ....+++-..+|..|..+.+|.+++..+.. .+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 1123344566666654 468999999999999996 443 334566777889999999999998877644 5666655
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.47 E-value=0.095 Score=48.99 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=106.1
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCc-cccee----------EEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGH-KNAIL----------DLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h-~~~v~----------~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..++.++.++.|+-.|.... +..-..... ...+. .++. .+..++.++.|+.+.-.|..+|+.+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 456666777777777776432 222221110 00111 1122 235677888999999999999998776
Q ss_pred eeccCc---ceeEeecCCCCCCEEEEEc------CCCceEEEeCCCCCceeecCC---C---------------------
Q 019006 138 MAEHNS---FVNSCCPSRRGPPLVVSGS------DDGTAKLWDMRQRGAIQTFPD---K--------------------- 184 (347)
Q Consensus 138 ~~~~~~---~v~~~~~~~~~~~~~~s~~------~d~~i~iwd~~~~~~~~~~~~---~--------------------- 184 (347)
...... ......+.-.+. .++.+. .+|.|..+|.++++.+-.+.. .
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 543110 000000100122 344443 268899999988876544321 0
Q ss_pred ---------CceEEEEEcCCCCeEEEEecC-----C-----------cEEEEeCCCCceEEEecCCCCceeE--------
Q 019006 185 ---------YQITAVSFSDASDKIYTGGID-----N-----------DVKVWDLRKGEVSMTLQGHQDMITG-------- 231 (347)
Q Consensus 185 ---------~~v~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~~-------- 231 (347)
..-..+++++..+.++.+..+ + .|.-.|+++|+....+|.....+..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 001234677777777766522 2 4666788899888777653222222
Q ss_pred -EEECCCCC---EEEEEcCCCcEEEEeCCCCCC
Q 019006 232 -MSLSPDGS---YLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 232 -v~~~~~~~---~l~t~~~d~~i~~wd~~~~~~ 260 (347)
+.+..+|+ .++.+..+|.+.+.|.++.++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 22334665 677889999999999876543
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0008 Score=60.92 Aligned_cols=78 Identities=19% Similarity=0.400 Sum_probs=65.2
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccccee-EEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAIL-DLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
..+.-+.|+|.-.++|.+..+|.|.+..+. ...+..+.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 467889999999999999999999888774 344455665666666 99999999999999999999999999887665
Q ss_pred e
Q 019006 137 K 137 (347)
Q Consensus 137 ~ 137 (347)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.047 Score=44.59 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcc-eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCc-eEE
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSF-VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITA 189 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-v~~ 189 (347)
|++++.|+..|.+++.+.++|.+...+...... +... ...+..++..|+.|++....|.++...+...+.... ..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~--~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ--CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE--EcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 678999999999999999999877766543221 2211 122345889999999999999999888877654433 233
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeC
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
-++.+-...++.+...|.+.--..
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceecCCCceEEEEeccceEEEEcc
Confidence 445554445555555565544443
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.018 Score=40.76 Aligned_cols=100 Identities=21% Similarity=0.350 Sum_probs=63.7
Q ss_pred eeEEEEcC---CC-CEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce
Q 019006 103 ILDLHWTT---DG-SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178 (347)
Q Consensus 103 v~~~~~~~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~ 178 (347)
|++|++.. +| +.|+.|+.|..||+|+-+ ..+.++.... .+..++.... ..|+.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG--GRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC--CEEEEEecCCEEEEEeCcc--ee
Confidence 45555543 33 579999999999999743 4555554443 3444444433 4688899999999997533 33
Q ss_pred eecCCCCceEEEEEcCCC----CeEEEEecCCcEE
Q 019006 179 QTFPDKYQITAVSFSDAS----DKIYTGGIDNDVK 209 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~ 209 (347)
.....+..++++.+..-. ..|++|=.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444455567776654332 2677887788764
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.41 E-value=0.054 Score=44.93 Aligned_cols=200 Identities=10% Similarity=0.150 Sum_probs=109.5
Q ss_pred cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---
Q 019006 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--- 217 (347)
Q Consensus 143 ~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 217 (347)
..+..+.+.+....+++.....+.|.-.+.. ++.+..++ .....-.+++..++.++++--.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3466677888777788888888888888864 56666654 33457778887666565555568889999883321
Q ss_pred -e----EEEe--c-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce-eEEEeccc--cccccceEEEEECC
Q 019006 218 -V----SMTL--Q-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC-VKILEGHQ--HNFEKNLLKCGWSP 286 (347)
Q Consensus 218 -~----~~~~--~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~s~ 286 (347)
. ...+ . .++..+..++|+|.++.|+.+-...-..++.+......... ........ ......+..+.++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1 1111 1 23345899999998888887766666667766531111111 11111111 11224577888998
Q ss_pred C-CCEEEEeeCCCeEEEEeCCCceeeEEe--cC--Cc-----cCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 287 D-GSKVTAGSSDRMVYIWDTTSRRILYKL--PG--HT-----GSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 287 ~-g~~l~sgs~dg~i~vwd~~~~~~~~~~--~~--h~-----~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
. |.+++....+..|..+| ..|+.+..+ .. |. .-.-.++|.+++.+.++. +-...|.|
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 6 45666777888999999 566665543 32 11 135689999998766554 44455554
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.40 E-value=0.083 Score=46.77 Aligned_cols=260 Identities=16% Similarity=0.236 Sum_probs=131.2
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-------cc---------cceeEEEEcCCCCEEEEecC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-------HK---------NAILDLHWTTDGSQIISASP 120 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-------h~---------~~v~~~~~~~~~~~l~s~~~ 120 (347)
...+....|+|+|+.+|-.. ++.|++++..+.........| -. +.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45677889999999988775 478999987543111111111 11 12246789999999988764
Q ss_pred C-CeEEEEEC---CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c-----CCCCceEEE
Q 019006 121 D-KTLRAWDV---ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F-----PDKYQITAV 190 (347)
Q Consensus 121 d-g~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~-----~~~~~v~~~ 190 (347)
| ..|+.+.+ ..... ....+........+... ..-.+.++|+.+++.... . ....-+..+
T Consensus 121 d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v 189 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDS------QYPEVESIRYPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRV 189 (353)
T ss_dssp E-TTS-EEEEEEESSSTE------SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred CCcCCceEEeeccCCccc------cCCcccccccCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence 4 34444432 11110 00112222222222111 012366788877765321 1 234458889
Q ss_pred EEcCCCCeEEEEe--cCC---cEEEEeCCCCceEEEecCC-CC---ceeEEEEC-CCCC-EEEEEcCCCcEEEEeCCCCC
Q 019006 191 SFSDASDKIYTGG--IDN---DVKVWDLRKGEVSMTLQGH-QD---MITGMSLS-PDGS-YLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 191 ~~~~~~~~l~~~~--~dg---~i~iwd~~~~~~~~~~~~~-~~---~i~~v~~~-~~~~-~l~t~~~d~~i~~wd~~~~~ 259 (347)
.|.+++..++..- .+. .+.++|..++.....+... .. .-..+.|. +++. ++.....||--.|+-+...
T Consensus 190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~- 268 (353)
T PF00930_consen 190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD- 268 (353)
T ss_dssp EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT-
T ss_pred eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc-
Confidence 9999988444332 222 3677788776554333221 11 22345554 5554 4445556775444433221
Q ss_pred CcCceeEEEeccccccccce-EEEEECCCCCEEE-EeeC----CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE
Q 019006 260 PQNRCVKILEGHQHNFEKNL-LKCGWSPDGSKVT-AGSS----DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~g~~l~-sgs~----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 333 (347)
....+.+... . -.| ..+.|+++++.|. ++.. ...|+.-++..+..+.++....+.-..+.|+|+++++
T Consensus 269 --~~~~~~lT~G--~--~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 269 --GGKPRQLTSG--D--WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp --SSEEEESS-S--S--S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEE
T ss_pred --ccceeccccC--c--eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEE
Confidence 1112222211 1 123 2466888877664 4554 2356666777233445665444433699999999877
Q ss_pred EE
Q 019006 334 GS 335 (347)
Q Consensus 334 ~s 335 (347)
+-
T Consensus 343 v~ 344 (353)
T PF00930_consen 343 VD 344 (353)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.40 E-value=0.07 Score=45.87 Aligned_cols=259 Identities=11% Similarity=0.121 Sum_probs=135.9
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEECCCCceeeeeeccCc-ce---
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWDVETGKQIKKMAEHNS-FV--- 145 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v--- 145 (347)
.++++|.+.. +.+-.+.. +-.-.+..+|+++.++++. ..-.|.+||..+-....++.-... ..
T Consensus 18 rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5777776432 22222221 1223456789999888764 233599999998776665443322 11
Q ss_pred ---eEeecCCCCCCEEE-EEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCceEE
Q 019006 146 ---NSCCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSM 220 (347)
Q Consensus 146 ---~~~~~~~~~~~~~~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~ 220 (347)
.....+.++..+++ -.+..-.|.+.|+..++.+..++...-....-.. ...|.+-+.||.+....+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeE
Confidence 11122222221111 1223344556666666666555443222222222 2457788899999888887 455432
Q ss_pred Ee----cCCCCce-eEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-----c-ccceEEEEECCCCC
Q 019006 221 TL----QGHQDMI-TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-----F-EKNLLKCGWSPDGS 289 (347)
Q Consensus 221 ~~----~~~~~~i-~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~s~~g~ 289 (347)
+. ....+++ ..-.+...+..++=.+.+|.|+--|+.... ......+...... + .+-.--+++++..+
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc--ccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 21 1112222 222333344444446788888888876432 1222222211000 0 01112345666655
Q ss_pred EEEEeeC--------C--CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEE-ecCCCcEEeec
Q 019006 290 KVTAGSS--------D--RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGS-CSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~--------d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~s~D~~i~i~~ 346 (347)
.|.+--. | ..|.++|+.+++++.+++- +..+.++..+.+.+ +|.+ ...++.+.++|
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 5554311 1 2588889999999999873 34578899998875 6644 45689999987
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.36 E-value=0.12 Score=50.25 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=71.3
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcce--------eEeecCC---------------CCCCEEEEEcCCCceE
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--------NSCCPSR---------------RGPPLVVSGSDDGTAK 168 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--------~~~~~~~---------------~~~~~~~s~~~d~~i~ 168 (347)
+..|+.++.++.|.-.|..+|+.+.++....... ..+.... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5678888888999999999998877765432210 0000000 1223677888999999
Q ss_pred EEeCCCCCceeecCCCCceE-------------EEEEcC--CCCeEEEEec----------CCcEEEEeCCCCceEEEec
Q 019006 169 LWDMRQRGAIQTFPDKYQIT-------------AVSFSD--ASDKIYTGGI----------DNDVKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~ 223 (347)
-.|.++++.+..+.....+. ...-.| .+..+++|+. +|.|+-+|.++|+....+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998887664433221 001111 1345666643 6889999999999877653
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0042 Score=59.92 Aligned_cols=103 Identities=17% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
.+..++.|+..|.+-..|..++-.++..-..-..+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678888888999888876653332222233568999999999999999999999999999999888887777665544
Q ss_pred eecCC--CCCCEEEEEcCCCceEEEeC
Q 019006 148 CCPSR--RGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 148 ~~~~~--~~~~~~~s~~~d~~i~iwd~ 172 (347)
+.+.. .+...++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 33211 11225666666665 5543
No 370
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0021 Score=59.07 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=79.5
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce-
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI- 178 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~- 178 (347)
..|.--+++..+++++.|+.-|.+++|+-..+.....-. .....+..++.+ ...+++++|+..|.|-++.+..+.+-
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccCCCc
Confidence 344444566678899999999999999876665432211 122333333443 44578899999999999987654321
Q ss_pred ----eec--CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 179 ----QTF--PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 179 ----~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
... .++..|++++|++++..+++|...|+|..-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 2456899999999999999999999998876654
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.10 E-value=0.094 Score=49.53 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=87.6
Q ss_pred ceeEeecCCCCCCEEEEEc-----CCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-----------
Q 019006 144 FVNSCCPSRRGPPLVVSGS-----DDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID----------- 205 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~-----~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------- 205 (347)
.+.....++++...++... .|+ .+.+++... .. ..+......+.-.|+|++..+++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 3444555666655544442 233 444445422 22 222222247778899998877766432
Q ss_pred -CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 206 -NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 206 -g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|.+=-+.........+.............+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 233333444333222 2245699999999999888765 46666632221111100110000011112233577889
Q ss_pred CCCCCEEEEeeCCCeEEEE--eCCCceeeEEecCC--ccCeeeEEEcC
Q 019006 285 SPDGSKVTAGSSDRMVYIW--DTTSRRILYKLPGH--TGSVNESVFHA 328 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vw--d~~~~~~~~~~~~h--~~~v~~~~~~~ 328 (347)
..++.++ ++..++...+| ++.. .....+.+. ...+..++=++
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG-~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDG-SNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCC-ccccccCCCCccCceEEEecCC
Confidence 9999865 55544444444 4432 222222332 44555666555
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.002 Score=37.95 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=30.0
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
...+..++|+|...+||.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456889999999999999999999999998 55443
No 373
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.06 E-value=0.21 Score=44.73 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=52.2
Q ss_pred EEEECCCCCeEEEeeCCCcEEE---EeccCCC----eeeEE----EeCcc-cceeEEEEcC-----------CCCEEEEe
Q 019006 62 TMKFNPAGTVIASGSHDRDIFL---WHVHGDC----KNFMV----LKGHK-NAILDLHWTT-----------DGSQIISA 118 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~---w~~~~~~----~~~~~----~~~h~-~~v~~~~~~~-----------~~~~l~s~ 118 (347)
.++.+|+++.||.|..+..+.+ |+..... ..... +.... ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577899999999988887766 6432111 11111 11111 4677776643 45678899
Q ss_pred cCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 119 SPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
-.+|.|++|.. +|..+..-..|...|..+
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~i 114 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKI 114 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEE
Confidence 99999999985 455444433445544443
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0024 Score=57.96 Aligned_cols=70 Identities=14% Similarity=0.268 Sum_probs=63.2
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+..+.|+|.-.++|.+..+|.|-+..+. .+.+..++-|...+. +++|.|||++||-|=.||+|.+.|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 457788899999999999999999999887 778889998888887 9999999999999999999999884
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.93 E-value=0.23 Score=42.85 Aligned_cols=240 Identities=13% Similarity=0.156 Sum_probs=129.3
Q ss_pred EEECCCCCeEEEeeC----------CCcEEEEeccCCCeeeE--EEeC-cccc----eeEEEEcCCCCEEEEec--CCCe
Q 019006 63 MKFNPAGTVIASGSH----------DRDIFLWHVHGDCKNFM--VLKG-HKNA----ILDLHWTTDGSQIISAS--PDKT 123 (347)
Q Consensus 63 v~~~~~~~~l~s~~~----------d~~v~~w~~~~~~~~~~--~~~~-h~~~----v~~~~~~~~~~~l~s~~--~dg~ 123 (347)
+..+|+++.+.+++. .-.|.+||...- .... .+.. |... ...++++.|+++++... ---.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 457899998877542 234888987532 2221 2322 1211 23456788888776553 3456
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeec-----CCCC-ceEEEEEcCCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTF-----PDKY-QITAVSFSDAS 196 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~-~v~~~~~~~~~ 196 (347)
|.|-|+...+.+..+...... .+- |.++.-|.+-+.||++....+.. ++..+.. ..+. -+..-.+...+
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~--~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCW--LIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEE--EEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCCCEE--EEE--ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 888888888777666443321 122 22334577778899999888873 3333221 1111 12233344455
Q ss_pred CeEEEEecCCcEEEEeCCCCceEE--EecCC----------CCceeEEEECCCCCEEEEE--------cCCC--cEEEEe
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSM--TLQGH----------QDMITGMSLSPDGSYLLTN--------GMDC--KLCIWD 254 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~----------~~~i~~v~~~~~~~~l~t~--------~~d~--~i~~wd 254 (347)
..++--+.+|.|+--|+....... .+..- .+--.-+++++..+.|.+- ..|+ .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 566667889999998886554322 11110 0112336777655555442 1233 355556
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEe-eCCCeEEEEeCCCceeeEEecC
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAG-SSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg-s~dg~i~vwd~~~~~~~~~~~~ 316 (347)
+.. .+.+..+.. ...+.++..+.|.+ +|++. ..++.|.+||..+++++.++++
T Consensus 276 ~~t----~krv~Ri~l-----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 276 LKT----HKRVARIPL-----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTT----TEEEEEEEE-----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCC----CeEEEEEeC-----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 553 233333321 23456788888765 66554 4578999999999999988764
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.0047 Score=49.21 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=69.9
Q ss_pred CEEEEEcCCCceEEEeCCCCCceee-cCCCCc-e-EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-CceeE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQ-I-TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-DMITG 231 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~-v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~ 231 (347)
.-++.|+.+|.|.+|+......... +..... + ..+....++.+..++..+|.||.|++..++.+-....|+ ..+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 3578899999999998763332221 122212 2 222233445678899999999999998888777666676 55666
Q ss_pred EEECCCCCEEEEE--cCCCcEEEEeCCC
Q 019006 232 MSLSPDGSYLLTN--GMDCKLCIWDMRP 257 (347)
Q Consensus 232 v~~~~~~~~l~t~--~~d~~i~~wd~~~ 257 (347)
......++.++.+ |.|..++.|++.+
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666667777777 7888888888764
No 377
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.81 E-value=0.45 Score=44.55 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.+.+++.++.+|.++.+|.++|+.+.+.+-.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4567778888999999999999999877643
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.79 E-value=0.39 Score=43.55 Aligned_cols=239 Identities=15% Similarity=0.186 Sum_probs=115.2
Q ss_pred cEEEEEECCCCCeEEEe-eCCC----cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC-----------
Q 019006 59 AVYTMKFNPAGTVIASG-SHDR----DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK----------- 122 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~-~~d~----~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg----------- 122 (347)
.+....++|+|++||-+ +..| .++++|+.+.....-.+.. ..-..+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999988754 3333 4899999654221111221 1122389999988876554332
Q ss_pred eEEEEECCCCcee--eeeeccC-cc-eeEeecCCCCCCEEEEEcCCC---ceEEEeCCCC-----CceeecCCCCce-EE
Q 019006 123 TLRAWDVETGKQI--KKMAEHN-SF-VNSCCPSRRGPPLVVSGSDDG---TAKLWDMRQR-----GAIQTFPDKYQI-TA 189 (347)
Q Consensus 123 ~i~iwd~~~~~~~--~~~~~~~-~~-v~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~-----~~~~~~~~~~~v-~~ 189 (347)
.|+.|.+.+.... ..+.... .. ...+..+.++..+++...... .+.+.|+... ......+....+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888765432 2222222 22 334555666655555444433 3666777654 222222222222 33
Q ss_pred EEEcCCCCeEEEEe----cCCcEEEEeCCCCce---EEEecCCCC--ceeEEEECCCCCEEEEEc-CCC--cEEEEeCCC
Q 019006 190 VSFSDASDKIYTGG----IDNDVKVWDLRKGEV---SMTLQGHQD--MITGMSLSPDGSYLLTNG-MDC--KLCIWDMRP 257 (347)
Q Consensus 190 ~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~v~~~~~~~~l~t~~-~d~--~i~~wd~~~ 257 (347)
+... +..++.-+ .++.|...++..... ...+..+.. .+..+.. .+++|+... .++ .|+++|+..
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence 3333 34333322 335677777766542 224444544 3455444 455555543 333 678888761
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEE--EeeC--CCeEEEEeCCCcee
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSS--DRMVYIWDTTSRRI 310 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~--sgs~--dg~i~vwd~~~~~~ 310 (347)
......+.... ...+..+...+++..+. ..|. =+.++.||+.+++.
T Consensus 359 ----~~~~~~~~~p~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 359 ----GKESREIPLPE---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ----TEEEEEEESSS---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ----CcEEeeecCCc---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 11112222111 12334444445554432 2332 25678888887764
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.77 E-value=0.51 Score=44.70 Aligned_cols=159 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred ccEEEEEECCCCCeEEEee------CCCcEEEE--eccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCe-EEEEE
Q 019006 58 SAVYTMKFNPAGTVIASGS------HDRDIFLW--HVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKT-LRAWD 128 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~------~d~~v~~w--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd 128 (347)
..+...+++|+|+.+|... .|+.-.|| +..+... ....+. ..+.-.|+|+|+.|.+.+.... +++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--QVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce--eeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4677889999998876654 34444455 4322222 223332 3667789999888877653211 11111
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
....+.+.+.++..+.... .....|..+.|+|||..++... ++.|
T Consensus 426 --------------------------------~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 426 --------------------------------DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred --------------------------------cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 0112334444444333222 2234689999999999887655 4677
Q ss_pred EE---EeCCCCceEE----Eec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 209 KV---WDLRKGEVSM----TLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 209 ~i---wd~~~~~~~~----~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
++ -....|.... .+. +-...+.++.|..++..+ ++..++.-.+|.+.
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 76 3433443111 121 222335789999888754 55544444555543
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.74 E-value=0.29 Score=41.50 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe------------
Q 019006 155 PPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL------------ 222 (347)
Q Consensus 155 ~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------ 222 (347)
+..++.|+.+| +.++++..............|..+..-++-+.+++-+ |+.++++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 34677788888 8999884333333333344588898888877766654 499999998654322210
Q ss_pred --cCCCCceeEEE--ECCCCCEEEEEcCCCcEEEEeCCCCCCcC-ceeEEEeccccccccceEEEEECCCCCEEEEeeCC
Q 019006 223 --QGHQDMITGMS--LSPDGSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD 297 (347)
Q Consensus 223 --~~~~~~i~~v~--~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d 297 (347)
......+..++ -...+...+.......|.+|......... ...+.+ .....+..++|. ++.|+.|..+
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-----~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-----SLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-----EcCCCcEEEEEe--CCEEEEEeCC
Confidence 01112233333 11234444445556689998876532222 222322 234667888888 6678888765
Q ss_pred CeEEEEeCCCceee
Q 019006 298 RMVYIWDTTSRRIL 311 (347)
Q Consensus 298 g~i~vwd~~~~~~~ 311 (347)
...+.|+.++...
T Consensus 158 -~f~~idl~~~~~~ 170 (275)
T PF00780_consen 158 -GFYLIDLNTGSPS 170 (275)
T ss_pred -ceEEEecCCCCce
Confidence 4788888866543
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.67 E-value=0.0076 Score=35.51 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=29.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
...|..++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 4443
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.01 Score=57.34 Aligned_cols=97 Identities=25% Similarity=0.402 Sum_probs=71.4
Q ss_pred EEEEEcCCCceEEEeCCCCCc--eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeE---
Q 019006 157 LVVSGSDDGTAKLWDMRQRGA--IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG--- 231 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~--- 231 (347)
.++.|+..|.+...|.+..-. .+......+|++++|+.+|..++.|-.+|.|.+||...++....+..|..+.++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 467788888888887764311 233344578999999999999999999999999999998888777666555444
Q ss_pred EEECCCCCEEEEEcCCCcEEEEeC
Q 019006 232 MSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+.+..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 344556667888777775 5543
No 383
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.42 E-value=0.64 Score=41.44 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCeEEEEe-----------cCC-cEEEEeCCC--Cc--eEEEecCCCCceeEEEECCCCCEEEEEcCCCc
Q 019006 186 QITAVSFSDASDKIYTGG-----------IDN-DVKVWDLRK--GE--VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
....++|+++++.+++-. ..+ .|.+++-.. ++ ....+.......+.|++.+++ |+.+.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 345566776666554432 122 566665432 22 122332223346889998888 444444443
Q ss_pred EEEEeCCCCC-CcCceeEEEeccccc---cccceEEEEECCCCCEEEEeeC-------------------CCeEEEEeCC
Q 019006 250 LCIWDMRPYA-PQNRCVKILEGHQHN---FEKNLLKCGWSPDGSKVTAGSS-------------------DRMVYIWDTT 306 (347)
Q Consensus 250 i~~wd~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~sgs~-------------------dg~i~vwd~~ 306 (347)
+++.|..... ........+.+.... .......+.|.|||.+.++-+. .|.|..++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344543211 110111112211110 1223567889999987665431 1557777776
Q ss_pred CceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 307 SRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.++....-.+ -...+.++|++++.++++-..+
T Consensus 173 g~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 6554322223 3456899999999888764433
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.32 E-value=1.2 Score=43.56 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=138.5
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe---CcccceeEEEEcCC-CCEEEEecCCCeEEEEECCCCcee
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
|....|-.+..+|.++..||.+..|.++.....+...+ --..++.--.|+.. .+.+++++ |.=..+|.. +++.+
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv 663 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLV 663 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEE
Confidence 33344555678899999999999887753332221111 11223333345443 34455444 443334432 23322
Q ss_pred eeeeccCcceeE-eecCCC-CCCEEEEEcCCCceEEEeCCC--CCceeecCCCCceEEEEEcCCCCeEEEEecC------
Q 019006 136 KKMAEHNSFVNS-CCPSRR-GPPLVVSGSDDGTAKLWDMRQ--RGAIQTFPDKYQITAVSFSDASDKIYTGGID------ 205 (347)
Q Consensus 136 ~~~~~~~~~v~~-~~~~~~-~~~~~~s~~~d~~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 205 (347)
..-..- ..+.. |.+..+ .+..++++. .+.+++.-+.. .-.+++.+-......+++.+....+++.+..
T Consensus 664 ~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 664 YSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred Eeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchh
Confidence 111000 11111 222221 223344443 35566655432 2234445555556666666644444433221
Q ss_pred -----C---cEEEEeCCCCceEEEecC-CCC---ceeEEEECCC-CCEEEEEc----------CCCcEEEEeCCCCCCcC
Q 019006 206 -----N---DVKVWDLRKGEVSMTLQG-HQD---MITGMSLSPD-GSYLLTNG----------MDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 206 -----g---~i~iwd~~~~~~~~~~~~-~~~---~i~~v~~~~~-~~~l~t~~----------~d~~i~~wd~~~~~~~~ 262 (347)
. .++++|-.+-+.....+- ... .|.+..|..| +.++++|. ..|.|.++.+... ..
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~- 819 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NS- 819 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cc-
Confidence 1 256666554443322111 112 3455568877 66777664 2467777766541 11
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
++.. +.....+.+.++. --+|++||.-+ ..|++|++.+++.+..-..|...+..+...-.+..++.|..=+.|
T Consensus 820 --L~~v--~e~~v~Gav~aL~-~fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 820 --LELV--AETVVKGAVYALV-EFNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred --eeee--eeeeeccceeehh-hhCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence 1111 1122234444432 13567776543 479999999987777777888888888888888888877765554
Q ss_pred Ee
Q 019006 343 YL 344 (347)
Q Consensus 343 ~i 344 (347)
.+
T Consensus 893 tl 894 (1096)
T KOG1897|consen 893 TL 894 (1096)
T ss_pred EE
Confidence 43
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.22 E-value=0.34 Score=45.79 Aligned_cols=218 Identities=13% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCEEEEecCCC------eEEEEECCCCceeeeeec-cCcceeEeecCCCCCCEEEEEcCC------CceEEEeCCCCCce
Q 019006 112 GSQIISASPDK------TLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDMRQRGAI 178 (347)
Q Consensus 112 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~ 178 (347)
+..++.||.++ .+..+|..++........ .......++.. ++.+.++|+.| .++..||.+..+-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 44566666663 577788776633221111 11111122222 23577888888 34667888766633
Q ss_pred eecCCC---CceEEEEEcCCCCeEEEEecCCc-----EEEEeCCCCceEEEecCCCCceeEEEE-CCCCCEEEEEcCCC-
Q 019006 179 QTFPDK---YQITAVSFSDASDKIYTGGIDND-----VKVWDLRKGEVSMTLQGHQDMITGMSL-SPDGSYLLTNGMDC- 248 (347)
Q Consensus 179 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~v~~-~~~~~~l~t~~~d~- 248 (347)
..-+-. .......+ .+...++|+.||. +..||.++.+-...-. ......+.+. .-+|...++||.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCC
Confidence 322211 11111111 4566778888874 7778877654211110 1111111111 12577777887654
Q ss_pred -----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-----eEEEEeCCCceeeEE--ecC
Q 019006 249 -----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-----MVYIWDTTSRRILYK--LPG 316 (347)
Q Consensus 249 -----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-----~i~vwd~~~~~~~~~--~~~ 316 (347)
.+..||.... .......+.. ...-..++ .-++...+.|+.|+ .|..||..+.+-... +..
T Consensus 440 ~~~l~sve~YDP~t~--~W~~~~~M~~-----~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 440 SNCLNSVECYDPETN--TWTLIAPMNT-----RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred ccccceEEEEcCCCC--ceeecCCccc-----ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 3455665421 1111111110 01111111 23567777888776 377788877653321 221
Q ss_pred CccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 317 HTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 317 h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
....+-. -.-++.+.+.++.||.-++
T Consensus 512 ~rs~~g~--~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 512 PRSAVGV--VVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred ccccccE--EEECCEEEEEecccCcccc
Confidence 1222221 2234567778888776443
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.14 E-value=0.64 Score=38.70 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=97.8
Q ss_pred CEEEEEcCCC--ceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEE-EecCCcEEEEeCCCCceEEEecCCCCcee
Q 019006 156 PLVVSGSDDG--TAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYT-GGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 156 ~~~~s~~~d~--~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
.++-+.+.-| .|+.+|+.+++.....+ ...---.++.. +..++- .=.++...+||..+-+...++.-. ..=+
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGW 133 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGW 133 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecC-Ccce
Confidence 4556655555 68889999888765443 32222223333 334443 346788999999888777766532 3346
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
.++ .++..|+.......+.++|..+++..... ..... ...-..+..+.|- +|...|=--....|...|..+|++
T Consensus 134 GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i-~V~~~--g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 134 GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI-QVTDN--GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-E-EET--TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred EEE--cCCCEEEEECCccceEEECCcccceEEEE-EEEEC--CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 666 45666776666778999997765432221 11111 1111234555554 566666666677889999999988
Q ss_pred eEEecC------------C---ccCeeeEEEcCCCCEEEEec
Q 019006 311 LYKLPG------------H---TGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 311 ~~~~~~------------h---~~~v~~~~~~~~~~~l~s~s 337 (347)
+..+.- + ..-.+.+||+|....+.-.|
T Consensus 208 ~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 208 VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 775520 1 23469999998876544433
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.14 E-value=0.92 Score=40.50 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=84.2
Q ss_pred CCCeEEEee-CCCcEEEEeccCCCee---eEEEeC---cc----cceeEEEEcCCCCEEEEec--CC----CeEEEEECC
Q 019006 68 AGTVIASGS-HDRDIFLWHVHGDCKN---FMVLKG---HK----NAILDLHWTTDGSQIISAS--PD----KTLRAWDVE 130 (347)
Q Consensus 68 ~~~~l~s~~-~d~~v~~w~~~~~~~~---~~~~~~---h~----~~v~~~~~~~~~~~l~s~~--~d----g~i~iwd~~ 130 (347)
+.++|+..+ ..+.|++.|+..+.+. ...+.. +. ..-..+.-.|+|+.++|+- .+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 6788999998644322 222221 11 1122333457888888762 22 457777777
Q ss_pred CCceeeeeeccC---cceeEeecCCCCCCEEEEEc--------------------CCCceEEEeCCCCCceeecCCC--C
Q 019006 131 TGKQIKKMAEHN---SFVNSCCPSRRGPPLVVSGS--------------------DDGTAKLWDMRQRGAIQTFPDK--Y 185 (347)
Q Consensus 131 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~--~ 185 (347)
+.+......... .+-.++.+.+.. +.+++.. ...++.+||+++++.++++.-. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 655544433221 122233333322 2333332 3468999999999998887543 2
Q ss_pred -ceEEEEEc--CCCCeEEEEec-CCcEEEE-eCCCCc----eEEEecCC-----------------CCceeEEEECCCCC
Q 019006 186 -QITAVSFS--DASDKIYTGGI-DNDVKVW-DLRKGE----VSMTLQGH-----------------QDMITGMSLSPDGS 239 (347)
Q Consensus 186 -~v~~~~~~--~~~~~l~~~~~-dg~i~iw-d~~~~~----~~~~~~~~-----------------~~~i~~v~~~~~~~ 239 (347)
-...+.|. |...+-++++. ...|..| ..+.++ .+.++..- ...|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34456664 44555454443 3334333 323332 22222211 23578999999999
Q ss_pred EEEEEc-CCCcEEEEeCCCCC
Q 019006 240 YLLTNG-MDCKLCIWDMRPYA 259 (347)
Q Consensus 240 ~l~t~~-~d~~i~~wd~~~~~ 259 (347)
+|..+. .+|.|+.||+.+..
T Consensus 325 fLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTT
T ss_pred EEEEEcccCCcEEEEecCCCC
Confidence 987655 68999999998643
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.06 E-value=0.32 Score=45.86 Aligned_cols=114 Identities=18% Similarity=0.355 Sum_probs=70.8
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec-CCCCceeEEEEC--CCCCEEEEEcCCCcEEEEeCC-----CCCCc
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLS--PDGSYLLTNGMDCKLCIWDMR-----PYAPQ 261 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~--~~~~~l~t~~~d~~i~~wd~~-----~~~~~ 261 (347)
+.-+..++..++-+....+.|||.+.+....+.. ...+.|.++.|. |+++.+++.|..+.|.++--. ...+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334433333343444579999999887544322 345779999885 688999999999999998542 22233
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
...++.+.-.... ..+|.+..|.++|.+++..+ +.+.|+|-.
T Consensus 115 w~~i~~i~i~~~T-~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHT-PHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCC-CCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 3333333221111 13567788999998776554 478888753
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.88 E-value=0.85 Score=37.98 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeeccCc-ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 103 ILDLHWTTDGSQIISASPDK--TLRAWDVETGKQIKKMAEHNS-FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
...+.|..+|.++-+.+.-| .|+.+|+.+++.......... +-..++.. +..+..-.-.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 34677867787888888776 699999999987655443322 22223332 23455556788999999999888887
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCC-----CCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
.++...+=..++ .++..|+.......|+++|..+-+...+++-. -..++.+.+- +|...|=.=....|...|
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 776655555555 35666776666778999998776555444321 1235556664 344333333344555555
Q ss_pred CCCCCCcCceeEEEec-----------cccccccceEEEEECCCCCEEEEee
Q 019006 255 MRPYAPQNRCVKILEG-----------HQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
..+ +.+...+.- ......+....+||.|.+..|...+
T Consensus 202 p~t----G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PET----GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCC----CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 442 222222210 0001135678899988766554433
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.71 E-value=1.6 Score=39.67 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCEEEEe-cCCC----eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC----------Cce
Q 019006 103 ILDLHWTTDGSQIISA-SPDK----TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD----------GTA 167 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----------~~i 167 (347)
+..+.++|++++++-+ +..| .++++|+.+++.+......... ..+.+.+++..++.+...+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999988754 3333 5999999999776543222222 1266666655555555333 236
Q ss_pred EEEeCCCCCce--eec--CCCCc-eEEEEEcCCCCeEEEEec---C-CcEEEEeCCCC----ceEEEecCCCCce-eEEE
Q 019006 168 KLWDMRQRGAI--QTF--PDKYQ-ITAVSFSDASDKIYTGGI---D-NDVKVWDLRKG----EVSMTLQGHQDMI-TGMS 233 (347)
Q Consensus 168 ~iwd~~~~~~~--~~~--~~~~~-v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~i-~~v~ 233 (347)
+.|.+.+...- ..+ +.... ...+..++++++++.... + ..+++.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77777654321 222 22223 667888999998875432 2 45788888764 1222222222223 3333
Q ss_pred ECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCC--eEEEEeCCC
Q 019006 234 LSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDR--MVYIWDTTS 307 (347)
Q Consensus 234 ~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg--~i~vwd~~~ 307 (347)
.. .+.+++... ..+.|...++...... .....+..+.. ...+.. +...+.+|+ .-..++ .|+++++..
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~--~~~l~~--~~~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDE--DVSLED--VSLFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SS--SEEEEE--EEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCC--ceeEEE--EEEECCEEEEEEEECCccEEEEEECCC
Confidence 33 333444332 2356666676643321 11112222211 012222 333444544 444444 588999983
Q ss_pred ceeeEEecCC-ccCeeeEEEcCCCC
Q 019006 308 RRILYKLPGH-TGSVNESVFHATEP 331 (347)
Q Consensus 308 ~~~~~~~~~h-~~~v~~~~~~~~~~ 331 (347)
+.....++.- .+.|..+...++..
T Consensus 359 ~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 359 GKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred CcEEeeecCCcceEEeccCCCCCCC
Confidence 3333333322 33455555555544
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.69 E-value=0.9 Score=36.84 Aligned_cols=133 Identities=12% Similarity=0.090 Sum_probs=77.9
Q ss_pred ceeEEEEcCCCCEEEEecCC---------CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe-
Q 019006 102 AILDLHWTTDGSQIISASPD---------KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD- 171 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd- 171 (347)
+..+-..+|+|++.+-.-.| |.++.|-.. -.+..+...-...+.+.+..+...+.+.-+.+.+|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34455568888884432222 345555332 112222222222333455555555666667777787777
Q ss_pred -CCCCC-----ceeecCC----C-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 172 -MRQRG-----AIQTFPD----K-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 172 -~~~~~-----~~~~~~~----~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
..++. .+..+.. . ...-.++++.+|+..++.-..++|..+|..+|+...++.-....|++++|--
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 33332 2222211 1 1123345566777777777888999999999999999888888999999963
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=1.1 Score=37.64 Aligned_cols=159 Identities=11% Similarity=0.172 Sum_probs=97.1
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCc-ceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS-FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
.+-...+.++.|+|+.+.|++......-.|+=...|+.++++....- -...+.... ++.++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 34445599999999999999998888888887777888777643210 001112222 2234555555666666655433
Q ss_pred Cce----------eecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE---ecCC-------CCceeEEEE
Q 019006 176 GAI----------QTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT---LQGH-------QDMITGMSL 234 (347)
Q Consensus 176 ~~~----------~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-------~~~i~~v~~ 234 (347)
..+ ....+ ....-.++|+|....|+.+=+.+-+.||....+..... ...+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 11222 34577899999999999988888777776543221111 1111 124677888
Q ss_pred CCC-CCEEEEEcCCCcEEEEeCC
Q 019006 235 SPD-GSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 235 ~~~-~~~l~t~~~d~~i~~wd~~ 256 (347)
++. +..|+-+.+++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 874 5566666777777777765
No 393
>PHA02713 hypothetical protein; Provisional
Probab=95.56 E-value=0.45 Score=44.93 Aligned_cols=33 Identities=6% Similarity=0.010 Sum_probs=22.7
Q ss_pred CCCEEEEeeCCC--eEEEEeCCCceeeEEecCCcc
Q 019006 287 DGSKVTAGSSDR--MVYIWDTTSRRILYKLPGHTG 319 (347)
Q Consensus 287 ~g~~l~sgs~dg--~i~vwd~~~~~~~~~~~~h~~ 319 (347)
+|...++|+.+| .+..||..+.+-...-+.|+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 678888898888 677888877664433444543
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.50 E-value=0.61 Score=44.51 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=75.4
Q ss_pred eeEEEECC--CCCEEEEEcCCCcEEEEeCCCCC-------CcCce----eEEEeccccccccceEEEEEC--CCCCEEEE
Q 019006 229 ITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYA-------PQNRC----VKILEGHQHNFEKNLLKCGWS--PDGSKVTA 293 (347)
Q Consensus 229 i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~s--~~g~~l~s 293 (347)
|+-|.... +...|+.+..||.|.+|.+.... ..... ....+.........++.++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 45554433 34578889999999999653110 00000 000011111234578999998 88899999
Q ss_pred eeCCCeEEEEeCCCc-eeeEE--ecCCccCeeeEEEcCCC------CEEEEecCCCcEEeecC
Q 019006 294 GSSDRMVYIWDTTSR-RILYK--LPGHTGSVNESVFHATE------PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 294 gs~dg~i~vwd~~~~-~~~~~--~~~h~~~v~~~~~~~~~------~~l~s~s~D~~i~i~~~ 347 (347)
++....|.||-.... +.... -..|...|.+|.|-++. ..+++++-.|++.+|+|
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999998855432 11111 11356679999998875 28889999999999875
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.47 E-value=2.4 Score=40.26 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=88.1
Q ss_pred CCCeEEEeeCCC------cEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCC-C-----eEEEEECCCCce
Q 019006 68 AGTVIASGSHDR------DIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPD-K-----TLRAWDVETGKQ 134 (347)
Q Consensus 68 ~~~~l~s~~~d~------~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g-----~i~iwd~~~~~~ 134 (347)
.+.+++.||.++ .+..||...+ +.....+. +...-.+++.. ++...++||.| | ++..||..+.+-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 455667777764 4667776543 22222222 22223344444 35677788888 3 466777766553
Q ss_pred ee--eeeccCcceeEeecCCCCCCEEEEEcCCCc-----eEEEeCCCCCceeecCCCCceEEEE-EcCCCCeEEEEecCC
Q 019006 135 IK--KMAEHNSFVNSCCPSRRGPPLVVSGSDDGT-----AKLWDMRQRGAIQTFPDKYQITAVS-FSDASDKIYTGGIDN 206 (347)
Q Consensus 135 ~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg 206 (347)
.. .+...... ......++.+.+.|+.||. +-.||..+.+-...-+........+ ..-.+...++|+.++
T Consensus 362 ~~~a~M~~~R~~---~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSD---FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCcccc---ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 22 11111111 1111123457788888864 5567776554322222211111111 122455666777554
Q ss_pred ------cEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCCCc-----EEEEeCC
Q 019006 207 ------DVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDCK-----LCIWDMR 256 (347)
Q Consensus 207 ------~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-----i~~wd~~ 256 (347)
.+..||..+++-.. .+..-... ..++. -++...+.||.|+. +..||..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred CccccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCC
Confidence 46788887664222 11111111 12232 25667777777762 5567655
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.45 E-value=1.1 Score=41.40 Aligned_cols=154 Identities=14% Similarity=0.252 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCceEEEecCCCCceeEEEECCC----CCEEEEEcCCCcEEEEeCCCC
Q 019006 185 YQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD----GSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~----~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..+..++|......+++.- .+|.+++=|. ..+..| ..|.+++|.|- -..|++......|.+|.+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 3566777774333333322 3344433221 222333 34899999985 335666677889999998632
Q ss_pred CC-cCceeEE-EeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC--ceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 259 AP-QNRCVKI-LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS--RRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 259 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
.. ..+.+.. .-.....+..-.-.|.|+|....|+.-.....-.++++.. .+....+ .-++-|-+.+|.+||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 11 1111111 1111112222344678999999998876655545555543 3333344 3467899999999998554
Q ss_pred -EecCCCcEEeec
Q 019006 335 -SCSSDKQIYLGE 346 (347)
Q Consensus 335 -s~s~D~~i~i~~ 346 (347)
..|..=.-||||
T Consensus 172 VAvGSsLHSyiWd 184 (671)
T PF15390_consen 172 VAVGSSLHSYIWD 184 (671)
T ss_pred EEeCCeEEEEEec
Confidence 445545577886
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.3 Score=48.21 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=88.2
Q ss_pred ceeEEEEcCCCCEEE--EecCCCeEEEEECCCCceeee-----ee------ccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 102 AILDLHWTTDGSQII--SASPDKTLRAWDVETGKQIKK-----MA------EHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
.+..+...+|+...+ ..+.+-.|..||+.+...... +. ..........+.+.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455555666755433 334455788999875422110 11 11222333444444444566677888888
Q ss_pred EEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCC----CCceeEEEECCCCCEEEE
Q 019006 169 LWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH----QDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 169 iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~v~~~~~~~~l~t 243 (347)
+.-+... ..+..++-....++++|+|-|..++.|-..|++.-|... .+....+.+. ...|.+|+|-....+++.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8776533 234455666678999999999999999999999998643 3333333221 357899999877666665
Q ss_pred Ec
Q 019006 244 NG 245 (347)
Q Consensus 244 ~~ 245 (347)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 43
No 398
>PHA02713 hypothetical protein; Provisional
Probab=95.36 E-value=2.6 Score=39.95 Aligned_cols=52 Identities=2% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCEEEEeeCC------CeEEEEeCCC-ce--eeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 287 DGSKVTAGSSD------RMVYIWDTTS-RR--ILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 287 ~g~~l~sgs~d------g~i~vwd~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
+|+..+.|+.+ ..+..||..+ .+ .+..++........+++ ++++.+.||.|+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence 46666667654 2467899886 33 33344433333333333 678888998887
No 399
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.55 Score=42.43 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=87.7
Q ss_pred CCCCeEE-EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-------EEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 194 DASDKIY-TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-------YLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 194 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-------~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
.+...++ .|+....++-.|+..|+.+-++.-|.+. -+.|.|+.. .-+.|-.+..|.-.|.|-...... +
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~-v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK-V 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-e
Confidence 3444444 5667778999999999999888877664 466777542 223444455555555553221111 1
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
...+.... .... ++.......++|.||..|-|++||--..+-..-+++-..+|..+..+.+|+++.+.+..
T Consensus 554 ~esKdY~t--Kn~F-ss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VESKDYKT--KNKF-SSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eeehhccc--cccc-cccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 11111110 1111 12223345699999999999999976666556788889999999999999877665543
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.18 E-value=1.6 Score=36.56 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCeEEEEe---cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe-CCCCCCc
Q 019006 186 QITAVSFSDASDKIYTGG---IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD-MRPYAPQ 261 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd-~~~~~~~ 261 (347)
.+.+.++++++..++... ....++++..... ....+.+ ..+..-.|++++...+....+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 578899999998777655 2334555544322 2222233 2577889999977766666666666663 221111
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEee---CCCeEEEEeCC---Cc------eeeEEecCCccCeeeEEEcCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS---SDRMVYIWDTT---SR------RILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs---~dg~i~vwd~~---~~------~~~~~~~~h~~~v~~~~~~~~ 329 (347)
.... ... ......|..+.+||||..+|.-. .++.|++=-+. .+ ..+.........+.+++|.++
T Consensus 101 -~~~~-v~~--~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 101 -EPVE-VDW--PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred -eeEE-ecc--cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1111 111 11112688999999999887655 35777776432 22 111222233567899999999
Q ss_pred CCEEEEecCCC
Q 019006 330 EPVIGSCSSDK 340 (347)
Q Consensus 330 ~~~l~s~s~D~ 340 (347)
..+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 99887666543
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.33 Score=47.96 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=87.5
Q ss_pred CceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCce-----EEEecCC------CCceeEEEECCCCC-EEEEEcCCCcE
Q 019006 185 YQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEV-----SMTLQGH------QDMITGMSLSPDGS-YLLTNGMDCKL 250 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~-----~~~~~~~------~~~i~~v~~~~~~~-~l~t~~~d~~i 250 (347)
..+..+...+|....++.. .+-.|+.||++.-.. ...+..| .....++.|.|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3455566666655544333 333789999875321 1112112 23355677887532 34556678888
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC---c-cCeeeEEE
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH---T-GSVNESVF 326 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h---~-~~v~~~~~ 326 (347)
++..+...... +.. ..+.....+++|+|.|+.++.|-..|++.-|... .++..++++. + ..|.+|.|
T Consensus 181 ~V~~~~~~~~~---v~s-----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---VTS-----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhhhh---hcc-----cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 88776532211 111 1234568899999999999999999999998654 3333333322 2 57899999
Q ss_pred cCCCCEEEE
Q 019006 327 HATEPVIGS 335 (347)
Q Consensus 327 ~~~~~~l~s 335 (347)
-....+++.
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 998887764
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.11 E-value=2.4 Score=38.21 Aligned_cols=146 Identities=15% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCeEEEeeCCCcEEEEeccCCC---eeeEEEeCcccceeEEEEcC----CCCEEEEecCCCeEEEEECCC--Cc-----
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDC---KNFMVLKGHKNAILDLHWTT----DGSQIISASPDKTLRAWDVET--GK----- 133 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~---~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~--~~----- 133 (347)
+...+++||..|.+++|+..... ..+.....-+.+|..++.-. .....++.-.-..+.||.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999985432 11222233456788877532 222333334566788887621 11
Q ss_pred --eeeeeeccCc--ceeEeec---C-CCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 134 --QIKKMAEHNS--FVNSCCP---S-RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 134 --~~~~~~~~~~--~v~~~~~---~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+..+..|.- ....++. . ..+..+++.-+.||.+.+++-+.-.....++.-.-...+.+.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 1222222221 1111111 1 122468888999999999987654434444543344567777778888888888
Q ss_pred CcEEEEeC
Q 019006 206 NDVKVWDL 213 (347)
Q Consensus 206 g~i~iwd~ 213 (347)
..+.-|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 88887764
No 403
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1.4 Score=35.07 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=89.0
Q ss_pred CceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE
Q 019006 165 GTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTG-GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
..|+.||+++++.+...+-. ..+..-....-+..++.- =.+|.-..||.++-++...+.- .+.=+.++ .++..|+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGWgLt--~d~~~Li 144 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGWGLT--SDDKNLI 144 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcceeee--cCCcceE
Confidence 35889999988766543322 122211122234444433 3567788888877665544432 22234444 3555566
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe--------
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-------- 314 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-------- 314 (347)
.+....++..-|..++....+..-...+... ..+..+.| -||...|---.+..|...|..+|+.+..+
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv---~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~ 220 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPV---SKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKE 220 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeec---ccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchh
Confidence 6666667777776655544433333322111 11222222 24555555555556666677777665433
Q ss_pred ----cCCccCeeeEEEcCCC-CEEEEe
Q 019006 315 ----PGHTGSVNESVFHATE-PVIGSC 336 (347)
Q Consensus 315 ----~~h~~~v~~~~~~~~~-~~l~s~ 336 (347)
..|..-.+.+|+.|++ ++++|+
T Consensus 221 ~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 221 LNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCccccccccccceeecCcCCeEEEec
Confidence 2345567899999998 555555
No 404
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.98 E-value=0.59 Score=42.24 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=88.7
Q ss_pred cCCCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC----CCCEEEEEcCCCceEEEeCCCCC-ceee--
Q 019006 109 TTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRG-AIQT-- 180 (347)
Q Consensus 109 ~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~-~~~~-- 180 (347)
..+..+|+ .++....++-.|++.|+.+.....+...+....+... ....-+.|-.+..|.-.|.+-.. .+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 34455554 4455567788888989888888777665433221110 01112335556666666765332 2221
Q ss_pred ---cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 181 ---FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 181 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+..+....+..-. ...++++++..|.|++||--.-.....+.+-...|..+..+.+|.++++.+.. .+.+-|++
T Consensus 556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 2223334444333 45789999999999999953333334456666778899999999998887754 56677764
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.97 E-value=2.1 Score=36.79 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 225 ~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
-...+..+..+++|++++++.....+.-||--. . ....|.......+..+.|.|++.+.+.+ ..|.|++=+
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-----~---~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-----T---TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT------S---S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCC-----c---cceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 345688888899999999988777777887431 1 1111222234678999999998887755 788888887
Q ss_pred -CCCceeeEE--ec--CCccCeeeEEEcCCCCEEEEecCCC
Q 019006 305 -TTSRRILYK--LP--GHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 305 -~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
....+...+ .+ .-.-.+.+++|.+++...|.++...
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 333332222 11 2223479999999988888666543
No 406
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.99 Score=40.99 Aligned_cols=102 Identities=15% Similarity=0.250 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
+.|..+..++.|..++..+.+|.+.++=.+.-.....+...+..|+|=.+.-+ ..+++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~------------------ 164 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSST------------------ 164 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCC------------------
Confidence 45788888999999999998886554432211111122222223333333221 22222110
Q ss_pred eEEEeccccccccceEEEEECCCC---CEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDG---SKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g---~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.-.+..++|+|+. ..|..-+.|+.||+||......++..++
T Consensus 165 -----------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 165 -----------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred -----------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 1124556688764 6677778888999998877766665544
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.72 E-value=2.8 Score=37.40 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=73.6
Q ss_pred ceeEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--Cc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 102 AILDLHWTTDGSQIISAS-----------PDK-TLRAWDVET--GK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
....|+|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.........+++.+.+ ++++ ....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCCe
Confidence 346788888888776643 223 666665432 22 122332222233445554443 4443 3333
Q ss_pred ceEEEeCCCC-----C---ceeecCC-----CCceEEEEEcCCCCeEEEEec-------------------CCcEEEEeC
Q 019006 166 TAKLWDMRQR-----G---AIQTFPD-----KYQITAVSFSDASDKIYTGGI-------------------DNDVKVWDL 213 (347)
Q Consensus 166 ~i~iwd~~~~-----~---~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~ 213 (347)
..++.|.... + .+..+.. ......+.+.|++...++-+. .|.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 1 1122322 234678999999876554331 144666666
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
..++....-.++. ....++|+++|+.+++-..+
T Consensus 172 dg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcC-CCccceECCCCCEEEEccCC
Confidence 5554433333332 35789999999887765433
No 408
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.51 E-value=3.2 Score=36.73 Aligned_cols=224 Identities=16% Similarity=0.167 Sum_probs=97.3
Q ss_pred EEcCCCCEEEEe-cCCC--eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eec
Q 019006 107 HWTTDGSQIISA-SPDK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTF 181 (347)
Q Consensus 107 ~~~~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~ 181 (347)
+|.++|++|+-+ ..|| .+.+.|+.+++..+-.............++.+..++. ...+..++-.|+.+.+.. ..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY-VKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE-EETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE-EECCCeEEEEECCcCcEEEEEEC
Confidence 467788766554 4455 4666688887654432221111112223344433333 334467888888876543 333
Q ss_pred CCCCceE-EEEEcCCCCeEEEEe---c-------------------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCC
Q 019006 182 PDKYQIT-AVSFSDASDKIYTGG---I-------------------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDG 238 (347)
Q Consensus 182 ~~~~~v~-~~~~~~~~~~l~~~~---~-------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~ 238 (347)
+....-. ....+.++..++-.- . ...|...|+++|+....+. ....+.-+-|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 3332211 112233444432110 1 1234555777776544444 34567778899977
Q ss_pred CEEEEEcCCC-----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE-----eeCCCeEEEEeCCCc
Q 019006 239 SYLLTNGMDC-----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA-----GSSDRMVYIWDTTSR 308 (347)
Q Consensus 239 ~~l~t~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s-----gs~dg~i~vwd~~~~ 308 (347)
..+++=+.+| .-+||-++.-... .+.+..+.. ...+.-=-|.|||..|.- ++.+..|.-+|+.++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~--~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRME--GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS------EESS---T--TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCC--CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 7666644332 2366766532222 222222211 223344458999987754 233557888888887
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+...... -..-..+.-++++++++-=|.|
T Consensus 275 ~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 5432211 1234567778888888644444
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.45 E-value=1.5 Score=42.63 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcE
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.+.|..+.++++|..++..|..|..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~ 108 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV 108 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE
Confidence 4578999999999999988886643
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.39 E-value=2.6 Score=35.29 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=80.6
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEe-CCCCce-EEEe
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWD-LRKGEV-SMTL 222 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~-~~~~ 222 (347)
+...+.++++..+.+....++.-.+|-...+...........+..-.|++++...+....+...+++. ...+.. ....
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV 105 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence 33445555555444444233334444333333333322333677778999866555555556666663 233321 1222
Q ss_pred cC--CCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCc-Ccee-EEEeccccccccceEEEEECCCCCEEEEee
Q 019006 223 QG--HQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQ-NRCV-KILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 223 ~~--~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.. -...|..+.++|||..++... .++.|.+=-+...... ...+ .... ........+..++|.+++.+++.+.
T Consensus 106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-VAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-ecccccCcceeeeecCCCEEEEEeC
Confidence 21 112799999999999887655 3467776654321111 1111 1111 0111124678999999999887766
Q ss_pred CCC
Q 019006 296 SDR 298 (347)
Q Consensus 296 ~dg 298 (347)
..+
T Consensus 185 ~~~ 187 (253)
T PF10647_consen 185 SAG 187 (253)
T ss_pred CCC
Confidence 543
No 411
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=3.1 Score=39.68 Aligned_cols=162 Identities=8% Similarity=0.137 Sum_probs=81.3
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE--EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM--VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
+.+..|.|+.+.. |++-..||++++|++.+...... ........|..+.+..+|-.+++ .+|.+.+-+-.....+
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKL 160 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchh
Confidence 3788999986554 55778999999999986543321 11223344666666656644444 3444444322111122
Q ss_pred eeeeccC-----cceeEeecCCCCCCEEEEEc-CCCceEEEeCCC-CCceeec-CCCCceEEEEEcCCCCeEEEEecCCc
Q 019006 136 KKMAEHN-----SFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQ-RGAIQTF-PDKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 136 ~~~~~~~-----~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
+++..-+ ...+++...+.....++--. ..+ ..++.... ......+ .....+..+.++|..++++-=..+|.
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK 239 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence 2222211 11111111111111111100 000 01111111 0111112 22356788999999999999999999
Q ss_pred EEEEeCCCCceEEEec
Q 019006 208 VKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~ 223 (347)
|.+-+.+..+...++.
T Consensus 240 i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 240 IWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEecchhhhhhccC
Confidence 9998877666555543
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.39 E-value=5.4 Score=38.86 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.|..+..+++|++|+..|..|...+.=....-....+......+ .++.+.+... ...-
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i--------------------~Crt~~v~~~--~~~~ 143 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEI--------------------NCRTVPVDER--FFTS 143 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcce--------------------eEEEEEechh--hccC
Confidence 57888899999999998887654442211100001111111111 1122222110 1111
Q ss_pred CCCCceEEEEEcCC---CCeEEEEecCCcEEEEeCCCC
Q 019006 182 PDKYQITAVSFSDA---SDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 182 ~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~ 216 (347)
.....|..+.|+|. +..|++-+.|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 22346788999987 478999999999999999654
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.22 E-value=2.3 Score=40.28 Aligned_cols=97 Identities=18% Similarity=0.334 Sum_probs=65.8
Q ss_pred EEEEEcCCCceEEEeCCCCCcee--ecCCCCceEEEEEc--CCCCeEEEEecCCcEEEEeCCC-----C----ceE--EE
Q 019006 157 LVVSGSDDGTAKLWDMRQRGAIQ--TFPDKYQITAVSFS--DASDKIYTGGIDNDVKVWDLRK-----G----EVS--MT 221 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~-----~----~~~--~~ 221 (347)
..+.-+...++.|||.+.+.... .+.....|..+.|. |+++.+++.+..+.|.+|.-.. . ..+ ..
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 44444555679999998776443 23446678888875 7888999999999999985321 1 111 22
Q ss_pred ecCCC-CceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 222 LQGHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 222 ~~~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+..|+ .+|.+..|.++|..++.+| +.+.++|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 34444 5799999999987766555 36888874
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.19 E-value=2.4 Score=34.06 Aligned_cols=128 Identities=15% Similarity=0.258 Sum_probs=69.0
Q ss_pred CeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---C---eEEEE-ECCCCceeeeeecc
Q 019006 70 TVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---K---TLRAW-DVETGKQIKKMAEH 141 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g---~i~iw-d~~~~~~~~~~~~~ 141 (347)
+.|+.+.....|.+|++. ..+.....+.. -+.|..+.++..|++|+|--.+ . .+|+| |.+..+ ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~------~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK------EE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc------cc
Confidence 455555666779999997 33444444433 3789999999999999986432 2 56665 222110 01
Q ss_pred CcceeE-eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 019006 142 NSFVNS-CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 142 ~~~v~~-~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 216 (347)
...+.. ++-++ +.++..... ...-.+-.+|....+.+++.-|..+.|+.|+. +++.+|.+...
T Consensus 102 ~~~v~vRiaG~~------v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGHR------VTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEcccc------cccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 111110 00000 011111110 01112234455567788888888777777765 46888877543
No 415
>PHA03098 kelch-like protein; Provisional
Probab=94.09 E-value=5.3 Score=37.64 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCEEEEecCCC------eEEEEECCCCceeeeeeccC--cceeEeecCCCCCCEEEEEcCC-----CceEEEeCCCCCc
Q 019006 111 DGSQIISASPDK------TLRAWDVETGKQIKKMAEHN--SFVNSCCPSRRGPPLVVSGSDD-----GTAKLWDMRQRGA 177 (347)
Q Consensus 111 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~ 177 (347)
++..++.||.++ .+..||..+.+.. .+..-. ..-..++. .++.+++.|+.+ ..+..||..+..-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 445566666543 4667787665432 111110 00111111 134566677755 3466777765542
Q ss_pred eee--cCCCCceEEEEEcCCCCeEEEEecC------CcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 178 IQT--FPDKYQITAVSFSDASDKIYTGGID------NDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 178 ~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
... ++....-.+++. -++...+.|+.+ +.+..||..+.+-.. .+..... -.+++. .++..++.||.+
T Consensus 371 ~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEE-ECCEEEEECCcc
Confidence 221 121111111121 234555566632 357888887653211 1110000 112222 245556666543
Q ss_pred C--------cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCce
Q 019006 248 C--------KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRR 309 (347)
Q Consensus 248 ~--------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~ 309 (347)
+ .+..||.... ... .+...... ......+. .++..++.|+.+ +.+.+||..+.+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~----~W~-~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTN----KWT-ELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCC----cee-eCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2 3777776532 111 11111000 00111122 266777777654 468888887654
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.09 E-value=4.4 Score=36.62 Aligned_cols=146 Identities=15% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCeEEEEecCCcEEEEeCCCCc-----eEEEecCCCCceeEEEECC-----CCCEEEEEcCCCcEEEEeCCCCCCc---C
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGE-----VSMTLQGHQDMITGMSLSP-----DGSYLLTNGMDCKLCIWDMRPYAPQ---N 262 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~v~~~~-----~~~~l~t~~~d~~i~~wd~~~~~~~---~ 262 (347)
...+++|+..|.++||+..... ...+.+ -..+|..+.... +...||. =.-+.+.+|.+...... +
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4588999999999999985432 222222 245777776532 2234444 44567888887432211 1
Q ss_pred c--eeEEEeccccccccceEEEEECC----C-CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 263 R--CVKILEGHQHNFEKNLLKCGWSP----D-GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 263 ~--~~~~~~~~~~~~~~~~~~~~~s~----~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
. .+..+..| .+......+.+.| . -.+|..=|.||.+.+|+-+.-.....+++ ---.--+.|.+.-..+++
T Consensus 115 ~~~~L~~~yeh--~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYEH--SLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEEE--ecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 1 11222222 2233334444332 2 35788899999999999876554455554 222234568888888888
Q ss_pred ecCCCcEEeec
Q 019006 336 CSSDKQIYLGE 346 (347)
Q Consensus 336 ~s~D~~i~i~~ 346 (347)
++.+..+...+
T Consensus 192 ~sss~~l~~Yk 202 (418)
T PF14727_consen 192 ASSSWTLECYK 202 (418)
T ss_pred ecCceeEEEec
Confidence 88887776543
No 417
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.00 E-value=3.7 Score=35.49 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=86.9
Q ss_pred ceeEEEEcCCCCEEEEecC-----C----CeEEEEECC-CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 102 AILDLHWTTDGSQIISASP-----D----KTLRAWDVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
.-..+...|+|.+.++... . ..-.+|.+. .+..++.+..+-...+.+++++++..++++=+..+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3456777888887665443 1 112455444 45555545444556677899999877777777778888887
Q ss_pred CCC--CCc-----eeecC-CCCceEEEEEcCCCCeEEEEecCC-cEEEEeCCCCceEEEecCCCCceeEEEEC-CCCCEE
Q 019006 172 MRQ--RGA-----IQTFP-DKYQITAVSFSDASDKIYTGGIDN-DVKVWDLRKGEVSMTLQGHQDMITGMSLS-PDGSYL 241 (347)
Q Consensus 172 ~~~--~~~-----~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~v~~~-~~~~~l 241 (347)
+.. +.. ...+. .....-.++.+.++.+-+++...| .|..|+.. ++....+.-....+++++|- |+.+.|
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 652 111 11111 123344566676776655555554 89999987 88887777665667888885 344555
Q ss_pred EEEc
Q 019006 242 LTNG 245 (347)
Q Consensus 242 ~t~~ 245 (347)
+..+
T Consensus 271 ~iTs 274 (307)
T COG3386 271 YITS 274 (307)
T ss_pred EEEe
Confidence 4443
No 418
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=3.1 Score=38.00 Aligned_cols=96 Identities=7% Similarity=0.099 Sum_probs=54.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.|..+..++.|..++.+|.+|.+.++-....-.-..+... ..+..|...+-+..++ +.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDg-k~~v~CRt~~i~~~~f-ts-------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDG-KSTVNCRTTPVAERFF-TS-------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCC-CceEEEEeecccceee-cc--------------------
Confidence 4667778899999999999997665432211111112211 1122222222211111 11
Q ss_pred CCCCceEEEEEcCCC---CeEEEEecCCcEEEEeCCCCceE
Q 019006 182 PDKYQITAVSFSDAS---DKIYTGGIDNDVKVWDLRKGEVS 219 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 219 (347)
...-.+..++|+|+. ..+..-+.|+.||+||+......
T Consensus 163 s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 163 STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 122345667888875 57888889999999998765444
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.52 E-value=0.37 Score=39.36 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=49.0
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
+..++++|++...+|.+++||+...+.....+....-... .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999864322221111000000 1235678888998998877665 47899998765
Q ss_pred ce
Q 019006 308 RR 309 (347)
Q Consensus 308 ~~ 309 (347)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 420
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.51 E-value=4 Score=34.31 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=94.5
Q ss_pred EECCCCCeEEEeeCC-----CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE-----------
Q 019006 64 KFNPAGTVIASGSHD-----RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW----------- 127 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d-----~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw----------- 127 (347)
.|||+|.+|...-+| |.|-+||..........+..|.-.-..+.|.+||+.++.+. |-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 489999998776544 56889988644444455677777778899999999988764 333333
Q ss_pred ---------ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe---------------CCCCCceeecCC
Q 019006 128 ---------DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD---------------MRQRGAIQTFPD 183 (347)
Q Consensus 128 ---------d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd---------------~~~~~~~~~~~~ 183 (347)
|..+|..+.+...... . ....-.. +.-+.||+|..=- .+.++.++.+.-
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~-l-----~~lSiRH-ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~ 270 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPAS-L-----RQLSIRH-LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL 270 (366)
T ss_pred hcCccEEEEeccccchhhhccCchh-h-----hhcceee-eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence 2222222111100000 0 0000001 1223445543311 011222222221
Q ss_pred --------CCceEEEEEcCCCCeEEEEecC-CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 184 --------KYQITAVSFSDASDKIYTGGID-NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 184 --------~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
..-+-+++.+.....++..+-. +...+||..++..+..-.-. ....++ +...-++..+.+|.+.++.
T Consensus 271 pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 271 PEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 1126677777766777666654 46789999999866543211 122233 3344456666788888774
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.37 E-value=0.019 Score=50.97 Aligned_cols=145 Identities=14% Similarity=0.248 Sum_probs=97.0
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F 181 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~ 181 (347)
-....|-+++.-++.++.+-.+..||-. ++..... ..+....+.++...++.+++.+-..+.+.+||+.+...-+. +
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3455688877778888899999999843 3322222 12233334555566667777788889999999975432221 1
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcE
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKL 250 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i 250 (347)
.....-.-+.|++....++.+...|.+.+++..+.+.....-.|...++++++.+.+. .+.++.|..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 1222222367888888889998999999999887766665555888999999998654 4555544433
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.30 E-value=3.4 Score=37.21 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=59.5
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeE-EEE-cCC---------------
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD-LHW-TTD--------------- 111 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~-~~~-~~~--------------- 111 (347)
....|.+....+.++..+|.+++.|+.+.-|.|.++|+... ..+..++|..++=.. +.- ...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 34456777888999999999999999988999999998532 333444554432111 000 000
Q ss_pred -CC-EEEEecCCCeEEEEECCCCceeeeee
Q 019006 112 -GS-QIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 112 -~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
.. +++-+-.-|.|.||++..+.++..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 01 23345677899999999888876654
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.22 E-value=0.33 Score=27.79 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.3
Q ss_pred ccEEEEEECCCC---CeEEEeeCCCcEEEEecc
Q 019006 58 SAVYTMKFNPAG---TVIASGSHDRDIFLWHVH 87 (347)
Q Consensus 58 ~~V~~v~~~~~~---~~l~s~~~d~~v~~w~~~ 87 (347)
++|++|+|+|+. .+||-+-.-|.|.++|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 479999999854 588888888999999985
No 424
>PHA03098 kelch-like protein; Provisional
Probab=93.14 E-value=6.2 Score=37.19 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCCCEEEEeeCC--------CeEEEEeCCCceeeE--EecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 286 PDGSKVTAGSSD--------RMVYIWDTTSRRILY--KLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 286 ~~g~~l~sgs~d--------g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.++...+.|+.+ ..+.+||..+++-.. .++........+. .++++++.||.+
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 355666667643 238889987764321 1111111111122 266777777765
No 425
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.96 E-value=0.7 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCCCEEEEee-CCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 286 PDGSKVTAGS-SDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 286 ~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
|++++|+++. .++.|.++|..+++.+.++.- ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677666554 578999999999988877765 334445554
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.92 E-value=8 Score=36.05 Aligned_cols=148 Identities=12% Similarity=0.245 Sum_probs=81.6
Q ss_pred ccEEEEEECCCCCeEEEee--CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC----CCEEEEecCCCeEEEEECCC
Q 019006 58 SAVYTMKFNPAGTVIASGS--HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD----GSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~--~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+|+.++|.--.+.+.+.- ..|.+++ ++... -|.-..|..+.|.|- ...|++....+.|.||.+.-
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kf----Gds~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKF----GDSKV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCcccc----CCccE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788889963333444431 1222221 22111 233346899999985 33566777888999998752
Q ss_pred -----Cceeeeeecc-----CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeecCCCCceEEEEEcCCCCeE
Q 019006 132 -----GKQIKKMAEH-----NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 132 -----~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l 199 (347)
.+.+.....+ .-.-..|.|+|... +++.-.....-.+++++... ....+...+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2222111111 11123466676654 44333333344456665332 33445667789999999999977
Q ss_pred EEE-ecCCcEEEEeCC
Q 019006 200 YTG-GIDNDVKVWDLR 214 (347)
Q Consensus 200 ~~~-~~dg~i~iwd~~ 214 (347)
+++ +..=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 654 333457888743
No 427
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.51 E-value=7.4 Score=34.69 Aligned_cols=200 Identities=13% Similarity=0.071 Sum_probs=96.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeeccC--cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC--ceE
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEHN--SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY--QIT 188 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~ 188 (347)
..++.+..||.+.-.|.++++.+.+..... ..+..-.....+ .++.++.++.+..+|.+++..+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 356666788888888888887554332221 111111111122 36778889988889988777766655443 111
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC---ceeEEEECCCCCEEEEEcC--CCcEEEEeCCCCCCcCc
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD---MITGMSLSPDGSYLLTNGM--DCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~v~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~ 263 (347)
.-..- ....++.++.++.+.-.|..+++.......-.. .+..--.. ....++.+.. ++.+.-.|.........
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeee
Confidence 11111 233445555778888888887877655432210 11100001 1223333333 44344444432221111
Q ss_pred ee--EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 264 CV--KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 264 ~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.. .............+..-... .+.-+..++.++.+...|..+++.+.+.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 00 00000000000000000000 1223466777888999999999999887764
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.45 E-value=3.3 Score=36.34 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=58.0
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC---CCEEE-EeeCC-------
Q 019006 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD---GSKVT-AGSSD------- 297 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~l~-sgs~d------- 297 (347)
.++|+|.|+|+.+++ -..|.|.+++.. .. ....+..+.............++++|+ ..+|. +.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~-~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKD-GS-LKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETT-TE-ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCC-Cc-CcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 578999999877665 559999999822 11 111222222111222456789999994 23433 33321
Q ss_pred -CeEEEEeCCCc-------e-eeEEecC---CccCeeeEEEcCCCCEEEEecCCC
Q 019006 298 -RMVYIWDTTSR-------R-ILYKLPG---HTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 298 -g~i~vwd~~~~-------~-~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
..|.-|....+ + ++..++. ..-.-..++|.|++.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24544544332 1 2223333 222346699999999888887654
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.39 E-value=0.99 Score=36.86 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=47.3
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeEE-------ec-------CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYK-------LP-------GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~-------~~-------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+..++++|++-+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 446789999999999999999998876532 12 3456788889998888777665 46777775
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.32 E-value=0.86 Score=26.11 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.0
Q ss_pred ceEEEEECCCC---CEEEEeeCCCeEEEEeCCC
Q 019006 278 NLLKCGWSPDG---SKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 278 ~~~~~~~s~~g---~~l~sgs~dg~i~vwd~~~ 307 (347)
.+.++.|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47789999854 4888888889999999985
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=2 Score=38.43 Aligned_cols=118 Identities=14% Similarity=0.249 Sum_probs=69.0
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeee---EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF---MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
...++|.+++|++|.+.||+--.|.+|-+++..++.... ...+..+..|....|+.+ .-++.....| +-+|.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 456799999999999999999999999999875432221 122334456889999876 4455554444 55665443
Q ss_pred C-ceeeeeeccCcceeEeecCCCCCCEEEEEc-CCCceEEEeCCC
Q 019006 132 G-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQ 174 (347)
Q Consensus 132 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~ 174 (347)
. +.++..+.++..|+-..+.+...-.+++.+ ..+++.=+.+++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 2 223344445555554444443332233322 334443344443
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.83 E-value=0.03 Score=49.85 Aligned_cols=142 Identities=17% Similarity=0.284 Sum_probs=96.0
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeE
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
....|.+.+..++.++.+..+..||-. ++...... .......|+|..++..++. +-..+.+.+||+.....+. +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--L- 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--L- 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH--H-
Confidence 345567777779999999899999843 33333322 2344566888887776554 4556899999986421110 0
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
...+. ..... ..|++.+..++.|-..|.+.+++..+.+.+.+...|...+...++.+.+..+ .++.|.
T Consensus 113 E~gg~---~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 113 ESGGT---SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred hccCc---chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence 01111 11112 5689999999999999999999998888776765699999999999987543 455443
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.74 E-value=15 Score=36.35 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=86.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCccee-------------EeecCC-CCCCEEEEEcC----------CCce
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN-------------SCCPSR-RGPPLVVSGSD----------DGTA 167 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~s~~~----------d~~i 167 (347)
+.+|+.++.|+.+.-.|.++|+.+..+..... +. .....+ -....++.|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCc-eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788899999999999999998876643211 10 000000 01124555532 6889
Q ss_pred EEEeCCCCCceeecCC----------CCc---------eEEEEEcCCCCeEEEEe------------------cCCcEEE
Q 019006 168 KLWDMRQRGAIQTFPD----------KYQ---------ITAVSFSDASDKIYTGG------------------IDNDVKV 210 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~----------~~~---------v~~~~~~~~~~~l~~~~------------------~dg~i~i 210 (347)
+-+|.++++.+-.+.. ... -...++++..+.++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999999887654421 000 12345566555555422 1234666
Q ss_pred EeCCCCceEEEecCCCCceeE---------EEECC-CCC---EEEEEcCCCcEEEEeCCCCC
Q 019006 211 WDLRKGEVSMTLQGHQDMITG---------MSLSP-DGS---YLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 211 wd~~~~~~~~~~~~~~~~i~~---------v~~~~-~~~---~l~t~~~d~~i~~wd~~~~~ 259 (347)
.|.++|+....++.....+.+ +.+.. +|+ .++.++.+|.+.+.|.++.+
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 788888887777652221221 22222 453 78888999999999987543
No 434
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.47 E-value=7.8 Score=32.70 Aligned_cols=226 Identities=15% Similarity=0.217 Sum_probs=119.0
Q ss_pred EEEEECCCC-CeEEEeeCCCc-EEEEeccCCCeeeE-------EEeCcccceeEEEEcCCCCEEEEecCC-----CeEEE
Q 019006 61 YTMKFNPAG-TVIASGSHDRD-IFLWHVHGDCKNFM-------VLKGHKNAILDLHWTTDGSQIISASPD-----KTLRA 126 (347)
Q Consensus 61 ~~v~~~~~~-~~l~s~~~d~~-v~~w~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~i 126 (347)
+.|.|+|.. .-++-+-.-|+ ..++|..+...+.. .+-+|. .|||||.+|+..-.| |.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEE
Confidence 456777754 44556666665 45677754332221 122332 489999999876443 78999
Q ss_pred EECCCC-ceeeeeeccCcceeEeecCCCCCCEEEEEc-----------------CCCceEEEeCCCCCceeec--C---C
Q 019006 127 WDVETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS-----------------DDGTAKLWDMRQRGAIQTF--P---D 183 (347)
Q Consensus 127 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------------~d~~i~iwd~~~~~~~~~~--~---~ 183 (347)
||...+ ..+.++..|.-....+.+..++..++++.+ ..-.+.+.|..++..++.. + .
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 998753 345556555544455566666654444332 1122334454555555433 2 1
Q ss_pred CCceEEEEEcCCCCeEEEEecCCc-----EEEEeCCCCceEEEecC-------CCCceeEEEECCCCCEEEEEc-CCCcE
Q 019006 184 KYQITAVSFSDASDKIYTGGIDND-----VKVWDLRKGEVSMTLQG-------HQDMITGMSLSPDGSYLLTNG-MDCKL 250 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~v~~~~~~~~l~t~~-~d~~i 250 (347)
...+..++..+++...+.+-..|. -.+=-.+.++...-+.. -...|-+++.+.+..+++..+ ..+..
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 235777788877766655443332 01111122222222211 134577888877666665555 44577
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
.+||..+. ..+..-. ..-++-.-+...-++..|.+|.+.++.
T Consensus 305 vi~da~tG----~vv~~a~--------l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATG----AVVSEAA--------LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCC----cEEeccc--------ccccccceeccCceEEecCCceEEecc
Confidence 89998743 2221110 000111224445566667778888774
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.11 E-value=8.9 Score=32.73 Aligned_cols=90 Identities=9% Similarity=0.053 Sum_probs=56.7
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC------CCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS------PDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.+..-|.|-+||.. ++.++.+... ..-...+.++.. ..|.+|+---.||+|..||..+++.+-.+..
T Consensus 217 ~G~G~G~VdvFd~~-----G~l~~r~as~--g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 217 AGAGLGYVNVFTLN-----GQLLRRVASS--GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred cCCCcceEEEEcCC-----CcEEEEeccC--CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 34445688888875 3344433211 112334555543 3577888777899999999999987777765
Q ss_pred Ccc------CeeeEEEcCC------CCEEEEecCC
Q 019006 317 HTG------SVNESVFHAT------EPVIGSCSSD 339 (347)
Q Consensus 317 h~~------~v~~~~~~~~------~~~l~s~s~D 339 (347)
-.+ .++.++|... +.+..+++-|
T Consensus 290 ~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 290 PDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred CCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 433 4688899773 3466666644
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.87 E-value=1.8 Score=40.97 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=43.5
Q ss_pred CCCCeEEEeeCCCcEEEEeccC---CCeeeE--EEeC--------------------cccceeEEEEcC----CCCEEEE
Q 019006 67 PAGTVIASGSHDRDIFLWHVHG---DCKNFM--VLKG--------------------HKNAILDLHWTT----DGSQIIS 117 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~---~~~~~~--~~~~--------------------h~~~v~~~~~~~----~~~~l~s 117 (347)
++...++.+..||.+....... ...... .+.. -...+..++.+. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888888887776543 111111 0000 112345566665 6789999
Q ss_pred ecCCCeEEEEECCCCceeeee
Q 019006 118 ASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.+.|+++|+||+.+++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999886554
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.80 E-value=0.6 Score=45.12 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=87.6
Q ss_pred EecCccccEEEEEECC-CCCeEEEeeCCCcEEEEecc---CCCeee---EEEeCcccceeEEEEc---CCCCEEEEecCC
Q 019006 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVH---GDCKNF---MVLKGHKNAILDLHWT---TDGSQIISASPD 121 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~---~~~~~~---~~~~~h~~~v~~~~~~---~~~~~l~s~~~d 121 (347)
+++|-.+.|-.+.|.. +-..++ ..-|.+++|+++ |+..+- .........+.-+.|. ++..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3556777888888853 222222 233778999874 222111 1112222233334444 455666666777
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
+.+++...+.... .-+..|...+.+.++...+-..+. ..+|||..|+.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~-------------------------------~lSpDGtv~a~ 252 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLA-------------------------------SLSPDGTVFAW 252 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhe-------------------------------eeCCCCcEEEE
Confidence 8888776654322 223335555544443322211111 15777778888
Q ss_pred EecCCcEEEEeC-----CCCceEEEecCCC-CceeEEEECCCC---------CEEEEEc-CCCcEEEEeCCC
Q 019006 202 GGIDNDVKVWDL-----RKGEVSMTLQGHQ-DMITGMSLSPDG---------SYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 202 ~~~dg~i~iwd~-----~~~~~~~~~~~~~-~~i~~v~~~~~~---------~~l~t~~-~d~~i~~wd~~~ 257 (347)
+..||.++.|-+ +...+.+..+.|. .+-.|.-++.+. .++++++ .+..+++|....
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 888877666643 3334455556665 222222233222 1344443 456788997653
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.78 E-value=3 Score=40.10 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCceEEEeCCC-------C-----C--------ceeecCCCCceEEEEEc--CCCCeEEEEecCCcEEEE
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQ-------R-----G--------AIQTFPDKYQITAVSFS--DASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~-------~-----~--------~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 211 (347)
+...|+.+.+||.|.+|.++. . . +...+.....+..++++ ...+.+|+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 346788999999999996521 1 0 11111223467888988 778889999988888888
Q ss_pred eCCCC--ceEE-EecCCCCceeEEEECCCC---C---EEEEEcCCCcEEEEeC
Q 019006 212 DLRKG--EVSM-TLQGHQDMITGMSLSPDG---S---YLLTNGMDCKLCIWDM 255 (347)
Q Consensus 212 d~~~~--~~~~-~~~~~~~~i~~v~~~~~~---~---~l~t~~~d~~i~~wd~ 255 (347)
-.... +... .-..|...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54432 1111 111245678899997643 2 7888999999999887
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.62 E-value=10 Score=32.64 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
...+..+..++++.+++++..-....-||.-... ..+.. .-...|..|.|.|++...+.+ ..|.|++=+...
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~----- 216 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD----- 216 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-----
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe-CCcEEEEccCCC-----
Confidence 3467778888999888877665556677753221 22222 234679999999998776654 778888876211
Q ss_pred ceeEEEeccccc---cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec---CCccCeeeEEEcCCCCEEEEe
Q 019006 263 RCVKILEGHQHN---FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP---GHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 263 ~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~ 336 (347)
........... ..-.+..++|.+++...++|+.. .+ +...+.|+--.+.+ .-...+..+.|.++++-+ ..
T Consensus 217 -~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~l 292 (302)
T PF14870_consen 217 -DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VL 292 (302)
T ss_dssp -EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE
T ss_pred -CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EE
Confidence 01111111111 11237899999998888877765 33 33444555444433 224567888887765544 45
Q ss_pred cCCCcEE
Q 019006 337 SSDKQIY 343 (347)
Q Consensus 337 s~D~~i~ 343 (347)
+.||.+.
T Consensus 293 G~~G~ll 299 (302)
T PF14870_consen 293 GQDGVLL 299 (302)
T ss_dssp -STTEEE
T ss_pred CCCcEEE
Confidence 5666553
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=90.38 E-value=12 Score=32.91 Aligned_cols=151 Identities=10% Similarity=0.053 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEE-EeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKV-WDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
..+..+.+.+++.+++ .+..|.+.. +|- .++.-... ..-...++++.+.++++.++.+ ..|.+.+=.... .
T Consensus 173 g~~~~i~~~~~g~~v~-~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~----G 245 (334)
T PRK13684 173 GVVRNLRRSPDGKYVA-VSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD----L 245 (334)
T ss_pred ceEEEEEECCCCeEEE-EeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC----C
Confidence 4578888888765554 444555443 221 12211112 1223568899999988876654 456654321111 1
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC---CccCeeeEEEcCCCCEEEEecCC
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
................+..+.+.|++..+++| .+|.+.. ....++.-...+. -......+.|..+++.++ ++..
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~ 322 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQR 322 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCC
Confidence 11111100000011246678888988766655 4565553 4444444333322 223577888887776655 6666
Q ss_pred CcEEee
Q 019006 340 KQIYLG 345 (347)
Q Consensus 340 ~~i~i~ 345 (347)
|.|.-+
T Consensus 323 G~il~~ 328 (334)
T PRK13684 323 GVLLRY 328 (334)
T ss_pred ceEEEe
Confidence 666543
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.31 E-value=0.23 Score=47.80 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred CcEEEEeCCCCCCcCce---eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeE
Q 019006 248 CKLCIWDMRPYAPQNRC---VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNES 324 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 324 (347)
|.+.+||+........+ ++...... .....|.-|-|-+...++..+-.++.+++....+... .-+++|+..+.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~g-s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYG-SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCC-CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 56788887643221111 12221111 1123344444555678888898899988876554322 3455688777766
Q ss_pred EE-----------cCCCCEEEEecCCCcEEeecC
Q 019006 325 VF-----------HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 325 ~~-----------~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+| +|||..+|.+..||.+.-|.+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 64 888888888888888776653
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=90.18 E-value=16 Score=34.03 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=60.5
Q ss_pred CCCeEEEeeCCC-----cEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCC--CeEEEEECCCCceeeeee
Q 019006 68 AGTVIASGSHDR-----DIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPD--KTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 68 ~~~~l~s~~~d~-----~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~ 139 (347)
++.+++.||.++ ++..||...+ +.....+...... .+++ .-++...+.||.+ ..+..||..+++-.. +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CC
Confidence 456667787653 4566766432 1111111111111 1122 2356666677654 357778866543211 11
Q ss_pred ccCcceeEeecCCCCCCEEEEEcCCC---ceEEEeCCCCCceee--cCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 140 EHNSFVNSCCPSRRGPPLVVSGSDDG---TAKLWDMRQRGAIQT--FPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
.-.......+....++.+.+.|+.++ .+..||.++..-... .+.. .....+.+ ++...+.| |.+.+||.
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecC
Confidence 11101100011111234666666543 456788765433221 1111 11122222 33444444 35778888
Q ss_pred CCCc
Q 019006 214 RKGE 217 (347)
Q Consensus 214 ~~~~ 217 (347)
++++
T Consensus 423 ~~~~ 426 (480)
T PHA02790 423 SSNT 426 (480)
T ss_pred CCCc
Confidence 7653
No 443
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.17 E-value=11 Score=32.05 Aligned_cols=165 Identities=12% Similarity=0.135 Sum_probs=98.8
Q ss_pred CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE
Q 019006 142 NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS 219 (347)
Q Consensus 142 ~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (347)
...+.++.+++....++ +..+...-.++=..+++.+.+++-. ...-.+.+...+.++++--.++.++++.+......
T Consensus 85 ~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 33467778888776554 4455566666656677888877643 23445666666666666667788888876554222
Q ss_pred -------EEec--CC-CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc---ccccceEEEEECC
Q 019006 220 -------MTLQ--GH-QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH---NFEKNLLKCGWSP 286 (347)
Q Consensus 220 -------~~~~--~~-~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~ 286 (347)
..+. .+ +.-...++|.|....|+.+=+-+-+.||.+... +..-.......+.. -+-..+..+.|++
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~-~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS-PSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC-CcccccccccCcccccceEeeccccceecC
Confidence 1221 12 334678999999988888877777777766521 11111111111110 1123566777876
Q ss_pred -CCCEEEEeeCCCeEEEEeCCCc
Q 019006 287 -DGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 287 -~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
.+.+|+-+..++.+.-.|....
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCC
Confidence 4566777777888888876543
No 444
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.12 E-value=2 Score=40.69 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.2
Q ss_pred ceEEEEECC----CCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 278 NLLKCGWSP----DGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 278 ~~~~~~~s~----~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
.....+.++ +..+|++-+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 344555666 7789999999999999999999986654
No 445
>PRK10115 protease 2; Provisional
Probab=89.22 E-value=23 Score=34.62 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=61.6
Q ss_pred ceeEEEEcCCCCEEEEec-CCC----eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC-----CceEEEe
Q 019006 102 AILDLHWTTDGSQIISAS-PDK----TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD-----GTAKLWD 171 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd 171 (347)
.+..+.|+||+++|+.+. .+| .+++.|+.+++.+........ ..+++.+++..++++...+ ..+..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788999999887653 223 588889988764322221211 2356666665566654432 3566677
Q ss_pred CCCC--CceeecCCC-CceE-EEEEcCCCCeEEEEe---cCCcEEEEeC
Q 019006 172 MRQR--GAIQTFPDK-YQIT-AVSFSDASDKIYTGG---IDNDVKVWDL 213 (347)
Q Consensus 172 ~~~~--~~~~~~~~~-~~v~-~~~~~~~~~~l~~~~---~dg~i~iwd~ 213 (347)
+.+. .....+... .... ....+.++.+++..+ .++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 7766 222223221 1222 334455777665433 3457888884
No 446
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.12 E-value=13 Score=33.77 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.6
Q ss_pred cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 319 GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 319 ~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..|..++..+..+.+.+...+|.|.+|++
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 34999999999999999999999999985
No 447
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.00 E-value=1.2 Score=23.57 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.0
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
..++.++.+|.++.+|..+|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36788889999999999999887654
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.71 E-value=16 Score=32.06 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=34.0
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEE----eCcccceeEEEEcCC
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVL----KGHKNAILDLHWTTD 111 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~----~~h~~~v~~~~~~~~ 111 (347)
..++|+|.|+|++|++ ...|.|++++..+.. ..+..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 4678999999988765 559999999844332 122222 123456789999994
No 449
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.47 E-value=2.6 Score=37.74 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=91.1
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEE-eC-cc---ccee-EEEEcCCCCEEEEecCCCeEEEE
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL-KG-HK---NAIL-DLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~-~~-h~---~~v~-~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
..-...|..+-..|+|+.|..-+. .++.+++++...-....+ .. .. ..|+ ++.....|.-++.++.||.|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 334456677788999998876655 678888876432211111 11 01 1122 22223345668888999999888
Q ss_pred -ECCCCc-----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE
Q 019006 128 -DVETGK-----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 128 -d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
|+..+. .++.+.-....+..... ....+-+++-+..|++.++.....+.+-..+.-....-++++|.+.++++
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 544322 12223222333333322 33345577778888888776544433322222224566789998888775
Q ss_pred EecCCcEEEEeCCCCce
Q 019006 202 GGIDNDVKVWDLRKGEV 218 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~ 218 (347)
- ..|+++++.+++...
T Consensus 375 e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 375 E-DQGKIRLAQLENRNP 390 (733)
T ss_pred e-cCCceEEEEecCCCC
Confidence 3 346788888766543
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.19 E-value=17 Score=31.79 Aligned_cols=148 Identities=14% Similarity=0.230 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCCeEEEEecCCc------EEEEeCCC--C--ceE-----EEecCCCC--------ceeEEEECCCCCEEE
Q 019006 186 QITAVSFSDASDKIYTGGIDND------VKVWDLRK--G--EVS-----MTLQGHQD--------MITGMSLSPDGSYLL 242 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~v~~~~~~~~l~ 242 (347)
.++.+.+.+++..+++.+.+|. ++.+++.. + ..+ ..+..-.+ ...+|++.+++.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 4677788766667777777777 66665543 1 000 11111111 345788877888888
Q ss_pred EEcCC------CcEEEEeCCCCCCcCce--eEEEec-----cccccccceEEEEECCCCCEEEEeeC-----CC--e---
Q 019006 243 TNGMD------CKLCIWDMRPYAPQNRC--VKILEG-----HQHNFEKNLLKCGWSPDGSKVTAGSS-----DR--M--- 299 (347)
Q Consensus 243 t~~~d------~~i~~wd~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~s~~g~~l~sgs~-----dg--~--- 299 (347)
+.-.+ ..|..++.. ....... ...+.. .....+..+=.++++|||+.|+++.. |+ .
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 77666 778888754 2211111 000100 11112345678899999996666543 22 1
Q ss_pred ----EEE--EeCCC-----ceeeEEecC-----CccCeeeEEEcCCCCEEE
Q 019006 300 ----VYI--WDTTS-----RRILYKLPG-----HTGSVNESVFHATEPVIG 334 (347)
Q Consensus 300 ----i~v--wd~~~-----~~~~~~~~~-----h~~~v~~~~~~~~~~~l~ 334 (347)
+++ ||..+ ++..+.+.. ....|.++.+.+++++|+
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 444 45443 223445543 456789999999998765
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.16 E-value=21 Score=32.77 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce--EEEec-----CCCCceeEEEECCCC
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV--SMTLQ-----GHQDMITGMSLSPDG 238 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~i~~v~~~~~~ 238 (347)
....++|.|++..|++--..|.|++++...+.. ...+. ....-...|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 467889999987665544469999997654432 11111 124557899999874
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.63 E-value=13 Score=29.95 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=35.1
Q ss_pred CeEEEEecCCcEEEEeCCCC--ceEEEecCCCCceeEEEECCCCCEEEEEc
Q 019006 197 DKIYTGGIDNDVKVWDLRKG--EVSMTLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
..|+.+.....|.+|++... +...++.. -+.|..+.++..|+|++|-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 45555566778999998833 34445543 36799999999999999964
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=13 Score=38.17 Aligned_cols=136 Identities=10% Similarity=0.214 Sum_probs=76.4
Q ss_pred CCCeEEEEECCCCceeeeeeccCcceeEeecCC--------CCCCEEEEEcCCCceEEEeCC----CCCce-----eec-
Q 019006 120 PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSR--------RGPPLVVSGSDDGTAKLWDMR----QRGAI-----QTF- 181 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~s~~~d~~i~iwd~~----~~~~~-----~~~- 181 (347)
-|..+.+|+.+++.....+..-...|..+.... .-..+++.++. -.|.++-+. +...- ..+
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence 578899999998665555544333333322211 11233443332 234444322 11110 111
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEE--EeCCCC---c-e----------------EEEec-CCCCceeEEEECCCC
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKV--WDLRKG---E-V----------------SMTLQ-GHQDMITGMSLSPDG 238 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~---~-~----------------~~~~~-~~~~~i~~v~~~~~~ 238 (347)
.....|+++....+|+.|++| .||.|+= |....+ + + ...+. .+.++|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 124568888877777666655 4554432 111111 1 1 11233 567789999999888
Q ss_pred CEEEEEcCCCcEEEEeCCC
Q 019006 239 SYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 239 ~~l~t~~~d~~i~~wd~~~ 257 (347)
+.+.+-+..++|..||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999975
No 454
>PRK10115 protease 2; Provisional
Probab=86.38 E-value=35 Score=33.45 Aligned_cols=192 Identities=11% Similarity=0.077 Sum_probs=89.9
Q ss_pred ccEEEEEECCCCCeEEEeeC-CC----cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC------CeEEE
Q 019006 58 SAVYTMKFNPAGTVIASGSH-DR----DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD------KTLRA 126 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~-d~----~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~i 126 (347)
-.+..+.++|+|++||-+-. +| .+++-++.+.......+.+ .-..++|++|++.|+-...+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999998775433 23 3667776432111111111 11458999998876655432 35777
Q ss_pred EECCCC--ceeeeeeccCccee-EeecCCCCCCEEEEEc--CCCceEEEeCC--CCCceeecCCCCc-eEEEEEcCCCCe
Q 019006 127 WDVETG--KQIKKMAEHNSFVN-SCCPSRRGPPLVVSGS--DDGTAKLWDMR--QRGAIQTFPDKYQ-ITAVSFSDASDK 198 (347)
Q Consensus 127 wd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~~~s~~--~d~~i~iwd~~--~~~~~~~~~~~~~-v~~~~~~~~~~~ 198 (347)
+++.++ +...-+........ ......++..+++... .++.+.+++.. .+......+.... ...+. +. +..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCE
Confidence 888877 22222222211111 2222223333443332 33568888843 2332222222222 12222 22 244
Q ss_pred EEEEecC----CcEEEEeCCCCceEEEecCC-C-CceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 199 IYTGGID----NDVKVWDLRKGEVSMTLQGH-Q-DMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 199 l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++.-+.. ..|...++........+..+ . ..|..+.+. .+..+++...++.-+++-+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 4433322 23444455421111233333 2 367778876 3344555555665555543
No 455
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.23 E-value=18 Score=30.04 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=75.3
Q ss_pred EEEeCCCCCceee-cCCCCceEEEEEcCCCCeEEEEec-C--CcEEEEeCCC--CceE-EE----ecCCCCceeEEEECC
Q 019006 168 KLWDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTGGI-D--NDVKVWDLRK--GEVS-MT----LQGHQDMITGMSLSP 236 (347)
Q Consensus 168 ~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~--~~~~-~~----~~~~~~~i~~v~~~~ 236 (347)
.+||+.+.+.... .....-+.+-.+-++|..+.+|+. + ..+++|+... ..+. .+ +.. ...=-++..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceECC
Confidence 4688876543211 122223444557789999988874 3 3588887543 0111 11 111 11112233457
Q ss_pred CCCEEEEEcCCC-cEEEEeCCCCCCcCceeEEEeccc-cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 237 DGSYLLTNGMDC-KLCIWDMRPYAPQNRCVKILEGHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 237 ~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
||+.|+.||.+. +.-+|.-............+.... ......--.+-..|+|++++.+..+ -.+||..+.+.+.++
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999998874 334444321111111111111100 0001112234457999999988875 456688888776666
Q ss_pred cCCc
Q 019006 315 PGHT 318 (347)
Q Consensus 315 ~~h~ 318 (347)
+.-.
T Consensus 206 P~lP 209 (243)
T PF07250_consen 206 PDLP 209 (243)
T ss_pred CCCC
Confidence 5433
No 456
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.16 E-value=39 Score=33.81 Aligned_cols=136 Identities=12% Similarity=0.081 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC--CCCceeEEEECCCC----
Q 019006 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--HQDMITGMSLSPDG---- 238 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~~~~---- 238 (347)
..|++++-. ...........++....+.+...++.++.++.+...++..+. .+.... -...|.|+.++|-+
T Consensus 470 ~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 470 NSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred ccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 346666644 222222222334444444444566777776767666665544 111111 13468899999742
Q ss_pred --CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 239 --SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 239 --~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.++.|.++..+.+--.-+ ....+....-.....+..+.-..+--|..+|.++..||.+..|-+.
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~p---d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLP---DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred cceEEEEEeecceEEEEEECC---CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 2677887776555443221 1111111111112334566666777789999999999998877543
No 457
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.73 E-value=26 Score=31.30 Aligned_cols=187 Identities=18% Similarity=0.363 Sum_probs=104.2
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-Ccccce---eEEEEcCCCCE--EEEec-CC---CeEEEEECCCC-cee
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAI---LDLHWTTDGSQ--IISAS-PD---KTLRAWDVETG-KQI 135 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v---~~~~~~~~~~~--l~s~~-~d---g~i~iwd~~~~-~~~ 135 (347)
|...+++...+++-+.+|++.++. +..+. +.-..| ..+.+ +|+. |+.++ .+ .+|++|.+... ..+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~--lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE--LQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E--EEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE--EEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 445788888899999999997653 22332 211111 22222 3433 33343 22 46999977531 123
Q ss_pred eeeecc-------CcceeEeecC--C-CCCCEEEEEcCCCceEEEeCC---CC----CceeecCCCCceEEEEEcCCCCe
Q 019006 136 KKMAEH-------NSFVNSCCPS--R-RGPPLVVSGSDDGTAKLWDMR---QR----GAIQTFPDKYQITAVSFSDASDK 198 (347)
Q Consensus 136 ~~~~~~-------~~~v~~~~~~--~-~~~~~~~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~ 198 (347)
..+... ...+..+|.. + .+..+++....+|.+..|.+. .+ ..++.|....++-.+..+.....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 332211 1123444442 2 233466677788988888764 22 23566666678889999998999
Q ss_pred EEEEecCCcEEEEeCCCC-----ceEEEecC--CCCceeEEEEC--CCC-CEEEE-EcCCCcEEEEeCCC
Q 019006 199 IYTGGIDNDVKVWDLRKG-----EVSMTLQG--HQDMITGMSLS--PDG-SYLLT-NGMDCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~-----~~~~~~~~--~~~~i~~v~~~--~~~-~~l~t-~~~d~~i~~wd~~~ 257 (347)
|+.+-++--|.-|+.+.. +.+....+ ....|..|++- .++ .||+. .-.+++..+||...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999988888887632 22222222 23567788774 333 35554 44577999999763
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=17 Score=29.21 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=56.1
Q ss_pred CCCEEEEecCC--CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE
Q 019006 111 DGSQIISASPD--KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188 (347)
Q Consensus 111 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 188 (347)
+|.++.+.+.- ..|++||+.+++.+.+..-....+..--....+..+..-.-.+|.-..+|.++-+.+..++...+-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 34555665543 4699999999887655433211111100011122233344567888888888777777666555545
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
.++. ++..++.+....+++.-|.+
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHH
Confidence 5543 34445555444456665654
No 459
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.04 E-value=2.7 Score=23.22 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=22.8
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.+..++.+|.|+-.|.++|+.+.++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999987753
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.61 E-value=14 Score=37.81 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=82.7
Q ss_pred EecCCcEEEEeCCCCceEEEecCCCCceeEEEE--------CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc-c
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSL--------SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH-Q 272 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~--------~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~ 272 (347)
.+.|+.+.+|+..++.....+.+-...|..|.. -|.=++++..+.--.|.++-+......... ..+..+ .
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-ccccccee
Confidence 456889999999986666666555555555442 233345555554555666644321111110 011110 0
Q ss_pred ccc-ccceEEEEECCCCCEEEEeeCCCeEEEE--eCCCc---e-e----------------eEEec-CCccCeeeEEEcC
Q 019006 273 HNF-EKNLLKCGWSPDGSKVTAGSSDRMVYIW--DTTSR---R-I----------------LYKLP-GHTGSVNESVFHA 328 (347)
Q Consensus 273 ~~~-~~~~~~~~~s~~g~~l~sgs~dg~i~vw--d~~~~---~-~----------------~~~~~-~h~~~v~~~~~~~ 328 (347)
... ...+.++....+|+.+++|-.| .|+=+ ....+ + + +.+++ .+..+|..++...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 001 1346677777788877766554 44422 11111 0 0 12344 5667899999999
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
...+|-+-++.|+|.+|++
T Consensus 253 SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred ccceeeeeccCceEEEEEc
Confidence 9999999999999999986
No 461
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.40 E-value=6.8 Score=33.78 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=51.5
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-----eeEEEcCCCCEEEEecCCCcEEeec
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-----NESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.++...++|.+|++.-.-..|++.|..+++++.++.|..+.= ...+|-.+-+++-....+++|.++|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 4556677899999999988999999999999999997662211 2255656666666667788888876
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.06 E-value=17 Score=26.98 Aligned_cols=115 Identities=11% Similarity=0.108 Sum_probs=65.0
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCc--------eEEEecCCCCceeEEEECC-----CCCEEEEEcCCCcEEEEeC
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGE--------VSMTLQGHQDMITGMSLSP-----DGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~v~~~~-----~~~~l~t~~~d~~i~~wd~ 255 (347)
.-.|+...+.|++++.-|+|.|++..... .+..+. -...|++++-.+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566667788889999999999865332 122222 234577775333 233555555 558999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEE---CC-CCCEEEEeeCCCeEEEEeCCCceeeEEec
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGW---SP-DGSKVTAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~-~g~~l~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
..... .. .+ .+.+-+.++.+ .. +.+++++|+ +..|.-||..-.+..+...
T Consensus 81 ~~N~d--~F---yk----e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSD--LF---YK----EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCch--hh---hh----hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEec
Confidence 74321 11 11 11233444433 33 344555554 5578888887777666543
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.91 E-value=9.6 Score=29.78 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.3
Q ss_pred CeeeEEEcCCC------CEEEEecCCCcEEeec
Q 019006 320 SVNESVFHATE------PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 320 ~v~~~~~~~~~------~~l~s~s~D~~i~i~~ 346 (347)
.+..++|||.| .+||....++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 68899999965 4899999999999874
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.36 E-value=10 Score=29.57 Aligned_cols=29 Identities=10% Similarity=0.366 Sum_probs=23.6
Q ss_pred ceeEEEEcCCC------CEEEEecCCCeEEEEECC
Q 019006 102 AILDLHWTTDG------SQIISASPDKTLRAWDVE 130 (347)
Q Consensus 102 ~v~~~~~~~~~------~~l~s~~~dg~i~iwd~~ 130 (347)
.|.+++|||.| -.|+....++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999953 367888899999999754
No 465
>PLN02193 nitrile-specifier protein
Probab=81.73 E-value=44 Score=30.98 Aligned_cols=52 Identities=6% Similarity=-0.064 Sum_probs=28.0
Q ss_pred CCCEEEEeeCC----CeEEEEeCCCceeeEEecCC----ccCeeeEEEcCCCCEEEEecCC
Q 019006 287 DGSKVTAGSSD----RMVYIWDTTSRRILYKLPGH----TGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 287 ~g~~l~sgs~d----g~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+++..+.|+.+ ..+.+||+.+.+-. ++... .......+..-++++++.++.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~-~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWT-QVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEE-EeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 56676766654 45899998876532 22211 1111112223356788888853
No 466
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=80.41 E-value=67 Score=32.17 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=112.4
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCce---------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC---CCC-
Q 019006 109 TTDGSQIISASPDKTLRAWDVETGKQ---------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM---RQR- 175 (347)
Q Consensus 109 ~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~---~~~- 175 (347)
-++...+++.+.+|.++--+..+... ...+... ..+........... ++..++.|.+..... ...
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~-D~l~~~~~~~t~d~-LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDD-DFIEQLLVASTHDY-LLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCC-CeeEEEEEecCCCe-EEEEeCCCcEEEEEhhhCcCCC
Confidence 34456778888999988776543211 1111221 22222222222333 444556677665543 221
Q ss_pred -----Cce---eecCCCCc-eEEEEEc--CCCCeEEEEecCCcEEEEeCCC-------CceEEEecCCCCceeEEEECCC
Q 019006 176 -----GAI---QTFPDKYQ-ITAVSFS--DASDKIYTGGIDNDVKVWDLRK-------GEVSMTLQGHQDMITGMSLSPD 237 (347)
Q Consensus 176 -----~~~---~~~~~~~~-v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~~~ 237 (347)
..+ ..+..... +.++.+. .+...++..+.+|.++-.++.. +.....+.. .+.+..+....+
T Consensus 571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~ 649 (800)
T TIGR01063 571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSG 649 (800)
T ss_pred cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCC
Confidence 111 11222223 3444432 3456788999999998876543 222223333 344544444445
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCcC---ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-------
Q 019006 238 GSYLLTNGMDCKLCIWDMRPYAPQN---RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS------- 307 (347)
Q Consensus 238 ~~~l~t~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~------- 307 (347)
...++..+..|.+..+......+.. .-+..+.- .-.+.+..+..-.++..++..+..|.++...+..
T Consensus 650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L---~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~ 726 (800)
T TIGR01063 650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL---KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG 726 (800)
T ss_pred CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC---CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence 5567777777777666554322111 11111111 1123344444334556788899999888876431
Q ss_pred --ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 308 --RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 308 --~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
+....++......+..+....+...++-.+.+|.+..
T Consensus 727 ~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lr 765 (800)
T TIGR01063 727 GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIR 765 (800)
T ss_pred CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1122233333344544444444444555566665543
No 467
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.26 E-value=41 Score=33.44 Aligned_cols=116 Identities=10% Similarity=0.136 Sum_probs=0.0
Q ss_pred EEEECC-CCCEEEEEcCCCcEEEEeC-CCCCCcCceeEEEecccccc------ccceEEEEECCCCCEEEEeeCCCeEEE
Q 019006 231 GMSLSP-DGSYLLTNGMDCKLCIWDM-RPYAPQNRCVKILEGHQHNF------EKNLLKCGWSPDGSKVTAGSSDRMVYI 302 (347)
Q Consensus 231 ~v~~~~-~~~~l~t~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~g~~l~sgs~dg~i~v 302 (347)
.++|+| +.+.||.....|...+||+ ...................+ ......+.|.++-..|+..+.. .+.+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~ 228 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLML 228 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEE
Q ss_pred EeCCCcee--eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 303 WDTTSRRI--LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 303 wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+.+... .-........|.++.-+|..+-.+..=....|...++
T Consensus 229 ~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~ 275 (765)
T PF10214_consen 229 IDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDV 275 (765)
T ss_pred EECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEc
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.05 E-value=39 Score=30.75 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=24.8
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
.|.+++..+..+.+++...++.|.+||+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899988889999999999999999975
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=79.56 E-value=84 Score=32.85 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=12.1
Q ss_pred EEEEECCCCCEEEEeeC
Q 019006 280 LKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~ 296 (347)
.+++++++|.+.++-++
T Consensus 596 r~Iavg~~G~lyvaEsD 612 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESD 612 (1899)
T ss_pred hceeecCCceEEEEecc
Confidence 56778888877666554
No 470
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.51 E-value=7.1 Score=21.72 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCceEEEeCCCCCceeecCC
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQRGAIQTFPD 183 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~ 183 (347)
+..++++...+++|.++|..+...+..+..
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 344566666788999999877766555443
No 471
>PHA02790 Kelch-like protein; Provisional
Probab=79.50 E-value=54 Score=30.55 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=46.7
Q ss_pred CCEEEEecCCC-----eEEEEECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCcee--e
Q 019006 112 GSQIISASPDK-----TLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAIQ--T 180 (347)
Q Consensus 112 ~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~--~ 180 (347)
+..++.||.++ .+..||..+.+... .+.........+. .++.+.+.|+.+ ..+..||..+..-.. .
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~---~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP---ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE---ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 44556666543 46667776654221 1111111111111 234566666653 356778876543222 2
Q ss_pred cCCC-CceEEEEEcCCCCeEEEEecCC---cEEEEeCCCCc
Q 019006 181 FPDK-YQITAVSFSDASDKIYTGGIDN---DVKVWDLRKGE 217 (347)
Q Consensus 181 ~~~~-~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~ 217 (347)
++.. .....+.+ ++...+.|+.++ .+..||.++.+
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCE
Confidence 2211 11222222 455556676543 46778876653
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.47 E-value=80 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=25.2
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEecc
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVH 87 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~ 87 (347)
....++|+|.-.++|.|...|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45678999999999999999999998653
No 473
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=78.71 E-value=52 Score=29.93 Aligned_cols=186 Identities=11% Similarity=0.149 Sum_probs=82.3
Q ss_pred CEEEEEcCCCceEEEeCCCCC----ceeecCC-----C---CceEEEEEcCCCCeEEEE--ecC----CcEEEEeCCCCc
Q 019006 156 PLVVSGSDDGTAKLWDMRQRG----AIQTFPD-----K---YQITAVSFSDASDKIYTG--GID----NDVKVWDLRKGE 217 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~----~~~~~~~-----~---~~v~~~~~~~~~~~l~~~--~~d----g~i~iwd~~~~~ 217 (347)
.+++-|-.+++|.++|+.+.. ..+.+.. + .....+-.-|+++.++++ ..+ |.+.++|-++-+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 455566688999999987432 2222221 0 112223344677777764 333 357788877666
Q ss_pred eEEEecCC---CCceeEEEECCCCCEEEEEc--------------------CCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 218 VSMTLQGH---QDMITGMSLSPDGSYLLTNG--------------------MDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 218 ~~~~~~~~---~~~i~~v~~~~~~~~l~t~~--------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
........ ...-..+-|.|..+.++|.. ...++.+||+... +.++.+.--..
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----~~~Q~idLg~~- 243 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR----KLLQTIDLGEE- 243 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT----EEEEEEES-TT-
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC----cEeeEEecCCC-
Confidence 66555432 23345677888888888854 3468999999843 34444432111
Q ss_pred cccceEEEEE--CCCCCEEEEee-CCCeEEEEeC-CCce----eeEEecCC-----------------ccCeeeEEEcCC
Q 019006 275 FEKNLLKCGW--SPDGSKVTAGS-SDRMVYIWDT-TSRR----ILYKLPGH-----------------TGSVNESVFHAT 329 (347)
Q Consensus 275 ~~~~~~~~~~--s~~g~~l~sgs-~dg~i~vwd~-~~~~----~~~~~~~h-----------------~~~v~~~~~~~~ 329 (347)
......+.| .|+..+=++|. -...|..|-. +.++ .+..++.- ..-|+++..|.|
T Consensus 244 -g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 -GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp -EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred -CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 012444445 45555543333 3344555432 3322 12222221 245799999999
Q ss_pred CCEEE-EecCCCcEEeecC
Q 019006 330 EPVIG-SCSSDKQIYLGEI 347 (347)
Q Consensus 330 ~~~l~-s~s~D~~i~i~~~ 347 (347)
.++|- ++=.+|.|+.+||
T Consensus 323 DrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-
T ss_pred CCEEEEEcccCCcEEEEec
Confidence 98765 4557999998886
No 474
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.30 E-value=72 Score=31.36 Aligned_cols=134 Identities=13% Similarity=0.263 Sum_probs=62.9
Q ss_pred EEEcCCCCeEEEEec----CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC-----cEEEEeCCCCCC
Q 019006 190 VSFSDASDKIYTGGI----DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC-----KLCIWDMRPYAP 260 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~-----~i~~wd~~~~~~ 260 (347)
+.|-.|..+.+.+.. ...+++|.- .|..-..-....+.-..++|-|+|..++|-+.|| .+.++.....+
T Consensus 207 i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr- 284 (1243)
T COG5290 207 IFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR- 284 (1243)
T ss_pred EEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc-
Confidence 445555555555542 234666652 2322111111122334578999999999987654 35555432110
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
.+.. . ++ ...+......+|+-....++.+ ..+.|++|-..+-.---+..-.-..+.-+.|||...
T Consensus 285 HGef-~-lr---~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 285 HGEF-D-LR---VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred cCCc-c-cc---CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence 0000 0 00 0012234445565544444433 345799997665432111111223455677888754
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.06 E-value=47 Score=29.07 Aligned_cols=31 Identities=6% Similarity=0.235 Sum_probs=21.1
Q ss_pred cccEEEEEECCCCCeEEEeeCCCc------EEEEecc
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRD------IFLWHVH 87 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~------v~~w~~~ 87 (347)
-+....|.+.+++..+++-+.+|. ++..++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~ 55 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRID 55 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEee
Confidence 356778888876666667777777 5555543
No 476
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.55 E-value=21 Score=30.54 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=51.0
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCC-------CceeeEEecC-----CccCeeeEEEcCCCCE------------E
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTT-------SRRILYKLPG-----HTGSVNESVFHATEPV------------I 333 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~-------~~~~~~~~~~-----h~~~v~~~~~~~~~~~------------l 333 (347)
.-+.++++|.+.+.++....+...+||.. ...++-.++. -+...+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46788999999999998888999999986 2234445553 2346788888865443 5
Q ss_pred EEecCCCcEEeec
Q 019006 334 GSCSSDKQIYLGE 346 (347)
Q Consensus 334 ~s~s~D~~i~i~~ 346 (347)
+.+++||+|-=|.
T Consensus 104 if~tEdGTisaW~ 116 (336)
T TIGR03118 104 LFVTEDGTLSGWA 116 (336)
T ss_pred EEEeCCceEEeec
Confidence 6788999998774
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.48 E-value=32 Score=31.19 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=84.9
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce-eeeeecc-Cc----ceeEeecCCCCCCEEEEEcCCCceEEE-e
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ-IKKMAEH-NS----FVNSCCPSRRGPPLVVSGSDDGTAKLW-D 171 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~----~v~~~~~~~~~~~~~~s~~~d~~i~iw-d 171 (347)
-...|..+-..|||+.++.-+. .++.++++.+... .+++... .+ .|......-.+..-+..++.||-+.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3455677888999998776544 6788888765432 1122111 11 111001112233456778899988877 6
Q ss_pred CCCCCc-----eeecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc
Q 019006 172 MRQRGA-----IQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 172 ~~~~~~-----~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
++.+.. ++.+.-. .++..+.-....+-+++-+..|++.++.....+....-.. -..+.-++++|++.++++-.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccchheeec
Confidence 654332 1111111 1222222222334566677777777775433332221111 12456688999999988854
Q ss_pred CCCcEEEEeCCCC
Q 019006 246 MDCKLCIWDMRPY 258 (347)
Q Consensus 246 ~d~~i~~wd~~~~ 258 (347)
.|.++++.+.+.
T Consensus 377 -~gki~~~~l~Nr 388 (733)
T COG4590 377 -QGKIRLAQLENR 388 (733)
T ss_pred -CCceEEEEecCC
Confidence 467999887653
No 478
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.27 E-value=7.9 Score=21.33 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=22.5
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecC
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~ 224 (347)
.++.++.+|.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466779999999999999998877653
No 479
>PRK05560 DNA gyrase subunit A; Validated
Probab=73.66 E-value=1e+02 Score=30.90 Aligned_cols=260 Identities=12% Similarity=0.057 Sum_probs=123.5
Q ss_pred CCCCCeEEEeeCCCcEEEEeccCC--------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC---C---
Q 019006 66 NPAGTVIASGSHDRDIFLWHVHGD--------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE---T--- 131 (347)
Q Consensus 66 ~~~~~~l~s~~~d~~v~~w~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---~--- 131 (347)
-++...++.-+.+|-|+.-....- ......++. .+.+..+......+.|+..+..|.+...... .
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 355677777778887776543210 000011111 1233333333445566666677776655432 1
Q ss_pred ---Cceee---eeeccCcceeEeecCC-CCCCEEEEEcCCCceEEEeCCC-------CCceeecCCCCceEEEEEcCCCC
Q 019006 132 ---GKQIK---KMAEHNSFVNSCCPSR-RGPPLVVSGSDDGTAKLWDMRQ-------RGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 132 ---~~~~~---~~~~~~~~v~~~~~~~-~~~~~~~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
|..+. .+......+..+.... .....++..+.+|.++--++.. +.....+.....+..+.......
T Consensus 574 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d 653 (805)
T PRK05560 574 TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDD 653 (805)
T ss_pred CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCC
Confidence 22221 1211222222222221 1335677888999988765431 11122233334444444444456
Q ss_pred eEEEEecCCcEEEEeCCC---------CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc---ee
Q 019006 198 KIYTGGIDNDVKVWDLRK---------GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR---CV 265 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~---~~ 265 (347)
.++..+..|.+..+.... |.....+.....-+..+.+.+++.+++..+..|.++...+..+....+ -.
T Consensus 654 ~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~ 733 (805)
T PRK05560 654 DILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV 733 (805)
T ss_pred EEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE
Confidence 677778888877665421 112223322222233344544444788888889888887654433221 12
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
..+..... .+.+..+........++..+.+|.+..++...-.. .......|..+.+..+..
T Consensus 734 ~~lkl~~~--~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~---~gR~a~GVk~I~L~~~D~ 794 (805)
T PRK05560 734 ITIKITEK--NGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI---TGRNTQGVRLIRLDEGDK 794 (805)
T ss_pred EeeeccCC--CCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc---cccCCCCeeeEecCCCCE
Confidence 22211100 12233322223334566677788888887643211 112234456666654443
No 480
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.87 E-value=29 Score=23.71 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=28.6
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEE
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTN 244 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~ 244 (347)
.+..+|.+.-||..+++....+.+ -..-+.|++++++.+++.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 345678899999998875544443 2356899999999977765
No 481
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.55 E-value=87 Score=28.67 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-ccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 226 QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-EKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 226 ~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
.++|.++.|++|++.+|.--.|++|.+++..+..+.... .+.... ...+....|+.. .-+|--+..| +-+|.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~-----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY-----TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH-----HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEE
Confidence 468999999999999999999999999997543222111 111111 234777778766 4455444443 45554
Q ss_pred CCC-ceeeEEecCCccCeeeEEEcCCCCE
Q 019006 305 TTS-RRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 305 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
... ++-+.-.+.|.-.|+=-+|.++...
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccce
Confidence 432 2223344566777777777777653
No 482
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.52 E-value=1.1e+02 Score=29.87 Aligned_cols=170 Identities=12% Similarity=0.170 Sum_probs=80.6
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-e--eccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK-M--AEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~ 156 (347)
.|.||+..|. .+..+.-....+..|.|+.+. .|++...||++++|++........ . ......|..|.+...+
T Consensus 65 ~I~If~~sG~--lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 65 YIRIFNISGQ--LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eEEEEecccc--chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 4777777653 221122222378899999764 577788999999999754322111 1 1112234445444433
Q ss_pred EEEEEcCCCceEEEeCCCCCceeecCC-C---CceEEEEEcCCCC---eEEEEe-cCC-cEEEEeCCCCceEEEecCCCC
Q 019006 157 LVVSGSDDGTAKLWDMRQRGAIQTFPD-K---YQITAVSFSDASD---KIYTGG-IDN-DVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~~~~~~~-~---~~v~~~~~~~~~~---~l~~~~-~dg-~i~iwd~~~~~~~~~~~~~~~ 227 (347)
++.-..+|++.+-+--.......++. . ...+|-...+++. .++-.. ..+ .+..-+....+ ...+.....
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNS 217 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCc
Confidence 23333445555543222222222221 0 0112222222211 111100 001 01000111111 111222234
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+..+..||+.++|+--..+|.|.+-+..
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 57778999999999999999988887765
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=69.92 E-value=95 Score=28.91 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=57.6
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC---ceeEEEECCCCCEEEEEc--------------CC-----
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD---MITGMSLSPDGSYLLTNG--------------MD----- 247 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~v~~~~~~~~l~t~~--------------~d----- 247 (347)
+...++|.+++... +.++.+|+. |+....+..... .=..+..-|+|++|+.+. .|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 45556666665444 678888874 554443322111 123456678888887766 12
Q ss_pred ---C-cEEEEeCCCCCCcCce----eEE---Eecc-ccccccceEEEEECC-CCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 248 ---C-KLCIWDMRPYAPQNRC----VKI---LEGH-QHNFEKNLLKCGWSP-DGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 248 ---~-~i~~wd~~~~~~~~~~----~~~---~~~~-~~~~~~~~~~~~~s~-~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
| .+..||+.+.-...+. ... .... ...----+.++.+.+ ++.+|+++=.-..|...|..++++.+.+
T Consensus 230 d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 230 DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 2 2345555432111100 000 0000 000001367888888 5555555555558999999999999888
Q ss_pred cCCc
Q 019006 315 PGHT 318 (347)
Q Consensus 315 ~~h~ 318 (347)
-.|.
T Consensus 310 g~~~ 313 (477)
T PF05935_consen 310 GPPG 313 (477)
T ss_dssp S-ST
T ss_pred CCCC
Confidence 7664
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.86 E-value=16 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=17.6
Q ss_pred EecCCccCeeeEEEcCCCCEEEEecC
Q 019006 313 KLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 313 ~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
++....+.-...+|+|+++.|+-++.
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEec
Confidence 34445556778899999998886664
No 485
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=69.61 E-value=9.4 Score=21.20 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=16.5
Q ss_pred CCCEEEEeeCCCeEEEEeCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.+..|+.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 467899999999999999764
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=69.60 E-value=75 Score=27.60 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=30.8
Q ss_pred CEEEEEcC-----CCceEEEeCCCCCcee--ecCCCCceEEEEEcCCCCeEEEEecCC----cEEEEeCCCCc
Q 019006 156 PLVVSGSD-----DGTAKLWDMRQRGAIQ--TFPDKYQITAVSFSDASDKIYTGGIDN----DVKVWDLRKGE 217 (347)
Q Consensus 156 ~~~~s~~~-----d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~ 217 (347)
.+.+.|+. ...+..||+.+..-.. .++........+....+...+.|+.++ .+..||..+.+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 45566653 2357778887654322 222211111122222455666676653 35678887654
No 487
>PLN02153 epithiospecifier protein
Probab=69.36 E-value=79 Score=27.75 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=27.4
Q ss_pred CCCEEEEeeCC--------------CeEEEEeCCCceeeEEecC------Ccc--CeeeEEEcCCCCEEEEecCCC
Q 019006 287 DGSKVTAGSSD--------------RMVYIWDTTSRRILYKLPG------HTG--SVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 287 ~g~~l~sgs~d--------------g~i~vwd~~~~~~~~~~~~------h~~--~v~~~~~~~~~~~l~s~s~D~ 340 (347)
++++++.|+.. +.++.||+.+..-. ++.. ... ....+....++.+++.+|.++
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~-~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE-KLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEEE-eccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence 46677777742 26788888765422 1211 000 012333444556777777643
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=69.20 E-value=73 Score=27.30 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=83.2
Q ss_pred ceEEEeCCCCCceeecC-------CCCceEEEEEcCCC-----CeEEEEe-cCCcEEEEeCCCCceEEEecCCC------
Q 019006 166 TAKLWDMRQRGAIQTFP-------DKYQITAVSFSDAS-----DKIYTGG-IDNDVKVWDLRKGEVSMTLQGHQ------ 226 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~------ 226 (347)
+|.+||+++.+.++.+. ....+..+.++... .+++.+. ..+.|.++|+.+++....+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 35567888877766542 23456777776532 2444433 44579999999886544332211
Q ss_pred -------------CceeEEEECC---CCCEEEEEcCCCcEEEEeC-----CCCCCcCc-----eeEEEeccccccccceE
Q 019006 227 -------------DMITGMSLSP---DGSYLLTNGMDCKLCIWDM-----RPYAPQNR-----CVKILEGHQHNFEKNLL 280 (347)
Q Consensus 227 -------------~~i~~v~~~~---~~~~l~t~~~d~~i~~wd~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~ 280 (347)
+.+.+++.+| ++++|.=....+ -++|-+ ++...... .++.+... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k----~~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDK----GSQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceecccc----CCCCc
Confidence 1244455544 334443322211 112211 11110000 01111100 01234
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCC------ceeeEEecCCccCeeeEEEcC--CCCEEEEec
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTS------RRILYKLPGHTGSVNESVFHA--TEPVIGSCS 337 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s 337 (347)
.++++++|.+.++--..+.|..|+... .+.+.+-+..-..+..+++.+ ++.+.+.+.
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 566788998888888999999999876 122332221124678899988 776555443
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=68.22 E-value=1.3e+02 Score=29.81 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec---CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ---GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+....+. +-++.++.+|.|.++...+......+. .|...|+.|....++-+++-.+.| .+++++..
T Consensus 628 Pvrsla~~---ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 628 PVRSLAFQ---EDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred cccchhhh---hceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 45555544 346778899999999876654444433 344578888887666666655544 55555543
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.99 E-value=77 Score=27.09 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=52.1
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc------CCCcEEEEeCCCCCCcCceeEEEec-cccccccce
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG------MDCKLCIWDMRPYAPQNRCVKILEG-HQHNFEKNL 279 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~------~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~ 279 (347)
.|.+||..+.+-...-.+-.+.|++|.|..+.+.++.|. ....+..||..... ...+.. ........+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-----w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-----WSSLGGGSSNSIPGPV 91 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-----eeecCCcccccCCCcE
Confidence 488898765543222223356799999986655555553 35578889886421 122222 112234555
Q ss_pred EEEEEC-CCCC-EEEEee-C--CCeEEEEeCCCce
Q 019006 280 LKCGWS-PDGS-KVTAGS-S--DRMVYIWDTTSRR 309 (347)
Q Consensus 280 ~~~~~s-~~g~-~l~sgs-~--dg~i~vwd~~~~~ 309 (347)
..+.+. .|+. +.+.|. . +..|..||-....
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 555542 2443 444443 2 3357777654433
No 491
>PRK13684 Ycf48-like protein; Provisional
Probab=67.35 E-value=88 Score=27.50 Aligned_cols=108 Identities=13% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCceeEEEECCCCCEEEEEcCCCcEE-EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 226 QDMITGMSLSPDGSYLLTNGMDCKLC-IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 226 ~~~i~~v~~~~~~~~l~t~~~d~~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
...+.++.+.|++.+++++. .|.+. .+|-. ........ ......+..+.+.++++.+++|. .|.+++=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-----g~tW~~~~---~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-----QTAWTPHQ---RNSSRRLQSMGFQPDGNLWMLAR-GGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-----CCeEEEee---CCCcccceeeeEcCCCCEEEEec-CCEEEEcc
Confidence 34688899999887766655 44443 22211 11111111 12235678888999999877764 56665323
Q ss_pred CCCceeeEEecC----CccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 305 TTSRRILYKLPG----HTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 305 ~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.+.++.-..... -...+..++|.+++..++ ++.+|.|+.
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV 284 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE
Confidence 444432222111 123578889999877554 556666543
No 492
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=67.26 E-value=85 Score=27.29 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCeEEEEec-----CCcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCCCc----EEEEeCC
Q 019006 196 SDKIYTGGI-----DNDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDCK----LCIWDMR 256 (347)
Q Consensus 196 ~~~l~~~~~-----dg~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d~~----i~~wd~~ 256 (347)
+...+.|+. ...+..||+.+.+=.. .+... ......+...+++..+.||.++. +..||..
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 445555653 2358888887654211 11111 11111222235666677776542 4567765
No 493
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=67.13 E-value=88 Score=27.46 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=20.0
Q ss_pred eEEEEeCCCceee--EEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 299 MVYIWDTTSRRIL--YKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 299 ~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
.+.+||..+.+-. ..++. ..-...+..-++++++.+|.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccCC
Confidence 4567877654321 12211 1112334455677888887653
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.04 E-value=50 Score=24.55 Aligned_cols=106 Identities=12% Similarity=0.188 Sum_probs=55.3
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCc--------eeeeeeccCcceeEeecCC----CCCCEEEEEcCCCceEEEeCCC
Q 019006 107 HWTTDGSQIISASPDKTLRAWDVETGK--------QIKKMAEHNSFVNSCCPSR----RGPPLVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 107 ~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~----~~~~~~~s~~~d~~i~iwd~~~ 174 (347)
.|......|+.+..-|+|.|++..... .+. +..-+..+.+++..+ .....|+.|+. ..+..||+.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 344444567777777888888754322 111 122233344443322 33456666665 5789999987
Q ss_pred CCceeecCCCCceEEEEEc---C-CCCeEEEEecCCcEEEEeCCC
Q 019006 175 RGAIQTFPDKYQITAVSFS---D-ASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~~dg~i~iwd~~~ 215 (347)
...+..-.-...++++.+- . +.+.+++|+ +-.|.-||..-
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 6654333333456665552 2 233444433 34566666543
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=66.82 E-value=1.4e+02 Score=29.72 Aligned_cols=187 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred ECCCC--CeEEEeeCCCcEEEEeccCCCeeeEEE---------eCcccceeEEEEcCCCCEEEEecCC---CeEEEEECC
Q 019006 65 FNPAG--TVIASGSHDRDIFLWHVHGDCKNFMVL---------KGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVE 130 (347)
Q Consensus 65 ~~~~~--~~l~s~~~d~~v~~w~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~ 130 (347)
++|.. .-+++-...|.+.+|-...+.+....- ...--.-.++++..+|..++.+..+ +.|++|.+.
T Consensus 56 ~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~ 135 (753)
T PF11635_consen 56 FHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQ 135 (753)
T ss_pred cCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEE
Q ss_pred CCce--eeeeec-------------------------------------cCcceeEeecCCCCCCEEEEEcCCC----ce
Q 019006 131 TGKQ--IKKMAE-------------------------------------HNSFVNSCCPSRRGPPLVVSGSDDG----TA 167 (347)
Q Consensus 131 ~~~~--~~~~~~-------------------------------------~~~~v~~~~~~~~~~~~~~s~~~d~----~i 167 (347)
-.-. -..+.. |-..+....-....+.++++.+... .|
T Consensus 136 I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI 215 (753)
T PF11635_consen 136 IDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSII 215 (753)
T ss_pred EeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEE
Q ss_pred EEEeCCCCC---------------------------ceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE
Q 019006 168 KLWDMRQRG---------------------------AIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 168 ~iwd~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (347)
.-|.++... ....+.....|.++....-+..++....||.|.++|-.+-+...
T Consensus 216 ~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 216 ERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred EEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc
Q ss_pred Ee---cCCCCceeE----------------EEECCCCCEEEEEcCCCcEE
Q 019006 221 TL---QGHQDMITG----------------MSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 221 ~~---~~~~~~i~~----------------v~~~~~~~~l~t~~~d~~i~ 251 (347)
.. ......|.+ ++|||++--++.-..+|.+.
T Consensus 296 ~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 296 ETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=66.72 E-value=97 Score=27.78 Aligned_cols=193 Identities=16% Similarity=0.270 Sum_probs=100.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccC-cce---eEeecCCCCCCEEEEEcCC---CceEEEeCCCC-CceeecC
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHN-SFV---NSCCPSRRGPPLVVSGSDD---GTAKLWDMRQR-GAIQTFP 182 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v---~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~-~~~~~~~ 182 (347)
...+|+....++-+.+||++ |+.+..+.... ..| ..+......-.++++...+ .+|++|.+... ..+..+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 44577777788889999986 45555443211 111 1111111111133444332 46899976521 2233221
Q ss_pred --------CCCceEEEEEc--CC-CC-eEEEEecCCcEEEEeCC---CC----ceEEEecCCCCceeEEEECCCCCEEEE
Q 019006 183 --------DKYQITAVSFS--DA-SD-KIYTGGIDNDVKVWDLR---KG----EVSMTLQGHQDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 183 --------~~~~v~~~~~~--~~-~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~i~~v~~~~~~~~l~t 243 (347)
....++.+|+. +. +. +++....+|.+..|.+. .+ +.+.++.. ...+..+.......+|+.
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence 11246677763 33 44 55677888988888764 33 23455543 346888888888889999
Q ss_pred EcCCCcEEEEeCCCCCCc-CceeEEEeccccccccceEEEE--ECCCC-CEEEEee-CCCeEEEEeCCC
Q 019006 244 NGMDCKLCIWDMRPYAPQ-NRCVKILEGHQHNFEKNLLKCG--WSPDG-SKVTAGS-SDRMVYIWDTTS 307 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~s~~g-~~l~sgs-~dg~i~vwd~~~ 307 (347)
+-++.-|.-|+..+.... ...+....+. .+...+-.++ ...+| .||++++ .++...||+...
T Consensus 225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~--~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 225 GEEDVGIWRYDAEPEGGNDRTLVASADGD--GLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EETTTEEEEEESSCCC-S--EEEEEBSSS--SB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ecCccEEEEEecCCCCCCcceeeeccccc--ccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999988888887754322 2222222221 1223333333 33444 3555544 577899999765
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=64.85 E-value=98 Score=27.17 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=8.0
Q ss_pred CeEEEEECCCCc
Q 019006 122 KTLRAWDVETGK 133 (347)
Q Consensus 122 g~i~iwd~~~~~ 133 (347)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 357788877654
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=64.29 E-value=1.6e+02 Score=29.31 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=70.0
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEE---EeCcccceeEEEEcCCCCEEEEecCCCeEEE--------EECCCCceeeee
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMV---LKGHKNAILDLHWTTDGSQIISASPDKTLRA--------WDVETGKQIKKM 138 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i--------wd~~~~~~~~~~ 138 (347)
..+..|+.++.+.++....+...... .......+.++.+++. .+..|.-||++-. ||.. ....+
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e---p~~~~ 622 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE---PNISI 622 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC---Ccccc
Confidence 35778889999999876412111111 1112234556555543 3444555555544 4332 11112
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
......+...++..+ ++-++.+|.+.++...+...... ..+...|+++.....+-+++..+.| .++.++..
T Consensus 623 ~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred ccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 222334444443322 55678899999998765443332 2345678888887655444433332 35555443
No 499
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=62.33 E-value=43 Score=28.08 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=38.8
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEE---EcCCCCEEEEecCCCcEEe
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV---FHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~---~~~~~~~l~s~s~D~~i~i 344 (347)
..|+.|.++|.|++.|...-..+.++.-.+-++.-.+ |...+-.|+-+..||.|++
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 5789999999999999988877766543333332122 2223457778889999886
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=59.20 E-value=1e+02 Score=25.63 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=66.7
Q ss_pred EEEEeCCCCceEEEecCC-CCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 208 VKVWDLRKGEVSMTLQGH-QDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
-.+||+.+++..- +.-. ...-.+=.+-++|+.+.+||.. ..+++++............. .........--+..
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES--PNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC--cccccCCCccccce
Confidence 3577887765422 2211 1112223466899999998752 35777775431111111110 00011122223344
Q ss_pred ECCCCCEEEEeeCCCe-EEEEeCCC-ceeeEE--ecC----C-ccCe-eeEEEcCCCCEEEEecCCCcEE
Q 019006 284 WSPDGSKVTAGSSDRM-VYIWDTTS-RRILYK--LPG----H-TGSV-NESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~-i~vwd~~~-~~~~~~--~~~----h-~~~v-~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
--|||+.|+.|+.+.. .-+|.... ...... +.. . .... .-+..-|++++++.+..+..|+
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 4689999999887753 44554421 111111 111 0 1111 3566788999998888776654
Done!